------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file FMN_HYDROXY_ACID_DH PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FMN_HYDROXY_ACID_DH.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CYB2_HANAN 573 CYB2_YEAST 591 CYBL_RHOGR 32 GOX_SPIOL 369 LA2M_MYCSM 393 LLDD_ECOLI 396 LLDD_HAEIN 381 MDLB_PSEPU 393 Pratt run started at Thu Feb 6 19:29:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 14.6802 11( 8) A-x(2,4)-V-x(2,4)-G-R 2: 12.0102 10( 8) Q-L-x(4,5)-R 3: 11.5102 11( 8) V-x(5)-R-x(0,2)-D 4: 11.5102 14( 8) E-V-x(0,2)-A 5: 11.5102 18( 8) E-x(0,1)-V-x(0,1)-A 6: 11.5102 9( 8) A-x(1,2)-V-x(0,1)-K 7: 11.5102 22( 8) A-x(0,1)-A-x(2,3)-A 8: 11.5102 9( 8) A-x(1,2)-E-x(2,3)-K 9: 11.5102 14( 8) A-x(3)-A-x(0,2)-K 10: 11.5102 10( 8) S-A-x(0,2)-A 11: 11.5102 11( 8) S-x(0,1)-A-x(1,2)-A 12: 11.5102 9( 8) I-x(2,3)-A-x(1,2)-A 13: 11.5102 12( 8) I-x(1,3)-E-x-A 14: 11.5102 10( 8) S-x(3,4)-E-x(0,1)-V 15: 11.5102 13( 8) A-x(0,1)-R-x(4,5)-A 16: 11.5102 12( 8) A-x(1,3)-S-x(2)-E 17: 11.5102 19( 8) A-x(4)-A-x(0,2)-A 18: 11.5102 12( 8) R-x(0,1)-A-x(4,5)-A 19: 11.5102 11( 8) G-x(0,1)-R-x(0,1)-R 20: 11.5102 17( 8) V-x(3,4)-G-x(0,1)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 20.0427 9( 8) A-x(2,4)-V-x(2,4)-G-R-x(4)-[AGSV]-x-[AS] B 2: 16.3811 8( 8) V-[ADES]-x(2)-[GNV]-x-R-x(0,2)-D C 3: 13.7298 11( 8) G-x(0,1)-R-x(0,1)-R-[DEGS] D 4: 13.6791 9( 8) Q-L-x(4,5)-R-x(4)-[ADGNQS] E 5: 13.1387 11( 8) E-V-x(0,2)-A-x(3)-[ADGPST] F 6: 13.1290 16( 8) V-x(3,4)-G-x(0,1)-R-x(2)-[ADGSTV] G 7: 11.5102 18( 8) E-x(0,1)-V-x(0,1)-A H 8: 11.5102 9( 8) A-x(1,2)-V-x(0,1)-K I 9: 11.5102 22( 8) A-x(0,1)-A-x(2,3)-A J 10: 11.5102 9( 8) A-x(1,2)-E-x(2,3)-K K 11: 11.5102 14( 8) A-x(3)-A-x(0,2)-K L 12: 11.5102 10( 8) S-A-x(0,2)-A M 13: 11.5102 11( 8) S-x(0,1)-A-x(1,2)-A N 14: 11.5102 9( 8) I-x(2,3)-A-x(1,2)-A O 15: 11.5102 12( 8) I-x(1,3)-E-x-A P 16: 11.5102 10( 8) S-x(3,4)-E-x(0,1)-V Q 17: 11.5102 13( 8) A-x(0,1)-R-x(4,5)-A R 18: 11.5102 12( 8) A-x(1,3)-S-x(2)-E S 19: 11.5102 19( 8) A-x(4)-A-x(0,2)-A T 20: 11.5102 12( 8) R-x(0,1)-A-x(4,5)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 20.0427 9( 8) A-x(2,4)-V-x(2,4)-G-R-x(4)-[AGSV]-x-[AS] Occurences: 9(8) CYB2_HANAN : 485- 499: alclg Akg--Vgl--GRpflyAmS sygdk CYB2_YEAST : 506- 520: alclg Akg--Vgl--GRpflyAnS cygrn CYBL_RHOGR : 2- 18: d Aqlp-Vkqr-GRarsiSaA evakh GOX_SPIOL : 302- 316: alalg Aag--Vfi--GRpvvfSlA aegea LA2M_MYCSM : 337- 351: alamg Asa--Vgi--GRpyawGaA lggsk LLDD_ECOLI : 267- 285: avrfg AdgivVsnhgGRqldgVlS saral LLDD_ECOLI : 323- 337: mialg Adt--Vll--GRaflyAlA tagqa LLDD_HAEIN : 267- 285: avrfg AdgivVsnhgGRqldgVlS saral MDLB_PSEPU : 320- 334: alalg Aea--Vll--GRatlyGlA arget B 2: 16.3811 8( 8) V-[ADES]-x(2)-[GNV]-x-R-x(0,2)-D Occurences: 8(8) CYB2_HANAN : 467- 476: kidif VDggVrRgtD vlkal CYB2_YEAST : 488- 497: klevf VDggVrRgtD vlkal CYBL_RHOGR : 20- 27: isaae VAkhNsR--D xmwvv GOX_SPIOL : 251- 260: aagii VSnhGaRqlD yvpat LA2M_MYCSM : 223- 230: kahsg VEaeGlR--D nprla LLDD_ECOLI : 272- 281: adgiv VSnhGgRqlD gvlss LLDD_HAEIN : 272- 281: adgiv VSnhGgRqlD gvlss MDLB_PSEPU : 159- 168: vlttd VAvnGyRerD lhnrf C 3: 13.7298 11( 8) G-x(0,1)-R-x(0,1)-R-[DEGS] Occurences: 11(8) CYB2_HANAN : 348- 351: dapsl G-R-RE kdmkm CYB2_HANAN : 470- 474: ifvdg GvR-RG tdvlk CYB2_YEAST : 491- 495: vfvdg GvR-RG tdvlk CYBL_RHOGR : 10- 14: pvkqr G-RaRS isaae GOX_SPIOL : 162- 165: dtprl G-R-RE adikn GOX_SPIOL : 287- 291: vfldg GvR-RG tdvfk LA2M_MYCSM : 185- 190: dtwif GwRpRD ltisn LLDD_ECOLI : 162- 167: dmptp GaRyRD ahsgm LLDD_HAEIN : 162- 167: dmptp GaRyRD mhsgm MDLB_PSEPU : 163- 168: dvavn GyReRD lhnrf MDLB_PSEPU : 305- 309: vlids GfR-RG sdivk D 4: 13.6791 9( 8) Q-L-x(4,5)-R-x(4)-[ADGNQS] Occurences: 9(8) CYB2_HANAN : 5- 17: mfks QLrtataRssfrS laskl CYB2_YEAST : 332- 344: qiqwy QLyvnsdRkitdD lvknv CYBL_RHOGR : 3- 14: da QLpvkq-RgrarS isaae GOX_SPIOL : 127- 139: girff QLyvykdRnvvaQ lvrra GOX_SPIOL : 139- 151: rnvva QLvrraeRagfkA ialtv LA2M_MYCSM : 150- 162: tpayf QLyypedRdlaeS firra LLDD_ECOLI : 127- 139: rpmwf QLyvlrdRgfmrN alera LLDD_HAEIN : 127- 139: rpmwf QLyvlkdRgfmkN alera MDLB_PSEPU : 129- 140: gdlwf QLyvih-ReiaqG mvlka E 5: 13.1387 11( 8) E-V-x(0,2)-A-x(3)-[ADGPST] Occurences: 11(8) CYB2_HANAN : 273- 279: ghpeg EV--AiakG agred CYB2_HANAN : 273- 281: ghpeg EVaiAkgaG redvv CYB2_HANAN : 445- 452: trapv EVl-AevmP ilker CYB2_YEAST : 466- 473: srapi EVl-AetmP ileqr CYBL_RHOGR : 19- 25: sisaa EV--AkhnS rdxmw GOX_SPIOL : 115- 121: tssve EV--AstgP girff LA2M_MYCSM : 307- 315: ldclp EVvkAsgdT pvlfd LLDD_ECOLI : 89- 96: yarrg EVq-AakaA dahgi LLDD_ECOLI : 89- 97: yarrg EVqaAkaaD ahgip LLDD_ECOLI : 115- 123: vcpie EVapAikrP mwfql LLDD_HAEIN : 89- 96: yarrg EVq-AaqaA dnkgv LLDD_HAEIN : 89- 97: yarrg EVqaAqaaD nkgvp LLDD_HAEIN : 115- 123: icpie EVapAikrP mwfql MDLB_PSEPU : 287- 294: aispm EVl-AqsvA ktgkp F 6: 13.1290 16( 8) V-x(3,4)-G-x(0,1)-R-x(2)-[ADGSTV] Occurences: 16(8) CYB2_HANAN : 428- 438: glqgv VlsnhGgRqlD ytrap CYB2_YEAST : 449- 459: gvsgv VlsnhGgRqlD fsrap CYB2_YEAST : 486- 496: kdkle VfvdgGvRrgT dvlka CYBL_RHOGR : 6- 14: daqlp Vkqr-G-RarS isaae GOX_SPIOL : 251- 260: aagii Vsnh-GaRqlD yvpat GOX_SPIOL : 273- 282: aleev VkaaqG-RipV fldgg GOX_SPIOL : 282- 292: qgrip VfldgGvRrgT dvfka LA2M_MYCSM : 317- 327: sgdtp VlfdsGiRtgA dvvka LLDD_ECOLI : 195- 203: qwawd Vgln-G-RphD lgnis LLDD_ECOLI : 271- 281: gadgi VvsnhGgRqlD gvlss LLDD_ECOLI : 272- 281: adgiv VsnhgG-RqlD gvlss LLDD_ECOLI : 272- 281: adgiv Vsnh-GgRqlD gvlss LLDD_HAEIN : 207- 216: htlgn VstymG-RqiG lddyi LLDD_HAEIN : 271- 281: gadgi VvsnhGgRqlD gvlss LLDD_HAEIN : 272- 281: adgiv VsnhgG-RqlD gvlss LLDD_HAEIN : 272- 281: adgiv Vsnh-GgRqlD gvlss MDLB_PSEPU : 159- 168: vlttd Vavn-GyRerD lhnrf MDLB_PSEPU : 300- 310: ktgkp VlidsGfRrgS divka G 7: 11.5102 18( 8) E-x(0,1)-V-x(0,1)-A Occurences: 18(8) CYB2_HANAN : 273- 275: ghpeg E-V-A iakga CYB2_HANAN : 445- 448: trapv E-VlA evmpi CYB2_YEAST : 95- 97: kispa E-V-A khnkp CYB2_YEAST : 466- 469: srapi E-VlA etmpi CYBL_RHOGR : 19- 21: sisaa E-V-A khnsr GOX_SPIOL : 114- 117: atssv EeV-A stgpg GOX_SPIOL : 115- 117: tssve E-V-A stgpg GOX_SPIOL : 271- 275: imale EvVkA aqgri LA2M_MYCSM : 307- 311: ldclp EvVkA sgdtp LA2M_MYCSM : 359- 362: gskgi EhV-A rslla LLDD_ECOLI : 44- 46: vedls E-V-A lrqri LLDD_ECOLI : 89- 92: yarrg E-VqA akaad LLDD_ECOLI : 114- 117: svcpi EeV-A paikr LLDD_ECOLI : 115- 117: vcpie E-V-A paikr LLDD_HAEIN : 89- 92: yarrg E-VqA aqaad LLDD_HAEIN : 114- 117: sicpi EeV-A paikr LLDD_HAEIN : 115- 117: icpie E-V-A paikr MDLB_PSEPU : 287- 290: aispm E-VlA qsvak H 8: 11.5102 9( 8) A-x(1,2)-V-x(0,1)-K Occurences: 9(8) CYB2_HANAN : 546- 551: sihnr AvpVaK dylye CYB2_YEAST : 94- 98: qkisp Ae-VaK hnkpd CYBL_RHOGR : 17- 22: arsis AaeVaK hnsrd CYBL_RHOGR : 18- 22: rsisa Ae-VaK hnsrd GOX_SPIOL : 321- 324: aaege Ag-V-K kvlqm GOX_SPIOL : 321- 325: aaege Ag-VkK vlqmm LA2M_MYCSM : 327- 331: girtg AdvV-K alamg LA2M_MYCSM : 327- 331: girtg Ad-VvK alamg LLDD_ECOLI : 294- 298: alpai AdaV-K gdiai LLDD_HAEIN : 294- 298: alppi AdaV-K gdiki MDLB_PSEPU : 290- 295: pmevl AqsVaK tgkpv I 9: 11.5102 22( 8) A-x(0,1)-A-x(2,3)-A Occurences: 22(8) CYB2_HANAN : 275- 280: pegev AiAkg-A gredv CYB2_YEAST : 16- 21: sknce A-AilrA sktrl CYBL_RHOGR : 17- 21: arsis A-Aev-A khnsr GOX_SPIOL : 91- 96: pegey AtAra-A saagt GOX_SPIOL : 93- 98: geyat ArAas-A agtim GOX_SPIOL : 93- 99: geyat ArAasaA gtimt GOX_SPIOL : 95- 99: yatar A-Asa-A gtimt GOX_SPIOL : 297- 302: tdvfk AlAlg-A agvfi GOX_SPIOL : 297- 303: tdvfk AlAlgaA gvfig GOX_SPIOL : 316- 321: vvfsl A-AegeA gvkkv LA2M_MYCSM : 31- 36: yadwe AhAqq-A lppgv LA2M_MYCSM : 112- 117: dghgd A-AsaqA sartg LA2M_MYCSM : 113- 119: ghgda AsAqasA rtgvp LA2M_MYCSM : 332- 337: advvk AlAmg-A savgi LLDD_ECOLI : 92- 96: rgevq A-Aka-A dahgi LLDD_ECOLI : 93- 98: gevqa AkAad-A hgipf LLDD_ECOLI : 287- 292: gvlss ArAlp-A iadav LLDD_ECOLI : 337- 342: flyal AtAgq-A gvanl LLDD_ECOLI : 386- 391: kelpa AlApm-A kgnaa LLDD_HAEIN : 92- 96: rgevq A-Aqa-A dnkgv MDLB_PSEPU : 93- 98: pkgdl AlAra-A tkagi MDLB_PSEPU : 95- 101: gdlal ArAatkA gipfv MDLB_PSEPU : 97- 101: lalar A-Atk-A gipfv MDLB_PSEPU : 315- 320: sdivk AlAlg-A eavll J 10: 11.5102 9( 8) A-x(1,2)-E-x(2,3)-K Occurences: 9(8) CYB2_HANAN : 330- 336: kavrh Ae-ErgmK glfit CYB2_YEAST : 187- 193: tkedi ArkEql-K sllpp CYBL_RHOGR : 17- 22: arsis Aa-Eva-K hnsrd GOX_SPIOL : 268- 274: patim AleEvv-K aaqgr GOX_SPIOL : 268- 274: patim Al-EevvK aaqgr GOX_SPIOL : 317- 324: vfsla AegEagvK kvlqm LA2M_MYCSM : 57- 63: ehtqr AnvEaf-K hwglm LLDD_ECOLI : 140- 145: gfmrn Al-Era-K aagcs LLDD_HAEIN : 140- 145: gfmkn Al-Era-K aagcs MDLB_PSEPU : 31- 38: ylegg AedEygvK hnrdv K 11: 11.5102 14( 8) A-x(3)-A-x(0,2)-K Occurences: 14(8) CYB2_HANAN : 126- 132: iiiry AgkdAt-K ifvpi CYB2_HANAN : 261- 266: pfyis AtalA--K lghpe CYB2_HANAN : 546- 551: sihnr AvpvA--K dylye CYB2_YEAST : 17- 23: kncea AilrAs-K trlnt CYB2_YEAST : 382- 388: fsntk AgpkAm-K ktnve CYB2_YEAST : 382- 389: fsntk AgpkAmkK tnvee CYBL_RHOGR : 17- 22: arsis AaevA--K hnsrd GOX_SPIOL : 317- 324: vfsla AegeAgvK kvlqm LA2M_MYCSM : 57- 63: ehtqr AnveAf-K hwglm LLDD_ECOLI : 140- 145: gfmrn AlerA--K aagcs LLDD_ECOLI : 292- 298: aralp AiadAv-K gdiai LLDD_HAEIN : 92- 99: rgevq AaqaAdnK gvpft LLDD_HAEIN : 140- 145: gfmkn AlerA--K aagcs MDLB_PSEPU : 93- 100: pkgdl AlarAatK agipf MDLB_PSEPU : 290- 295: pmevl AqsvA--K tgkpv L 12: 11.5102 10( 8) S-A-x(0,2)-A Occurences: 10(8) CYB2_HANAN : 211- 213: layyc SA--A ddevt CYB2_HANAN : 260- 263: apfyi SAt-A laklg CYB2_YEAST : 275- 278: vpfyv SAt-A lcklg CYBL_RHOGR : 16- 18: rarsi SA--A evakh GOX_SPIOL : 97- 99: taraa SA--A gtimt LA2M_MYCSM : 114- 117: hgdaa SAq-A sartg LLDD_ECOLI : 4- 6: mii SA--A sdyra LLDD_ECOLI : 286- 289: dgvls SAr-A lpaia LLDD_HAEIN : 286- 289: dgvls SAr-A lppia MDLB_PSEPU : 254- 258: vkgll SAedA drcia M 13: 11.5102 11( 8) S-x(0,1)-A-x(1,2)-A Occurences: 11(8) CYB2_HANAN : 260- 263: apfyi S-At-A laklg CYB2_YEAST : 92- 97: nkqki SpAevA khnkp CYB2_YEAST : 275- 278: vpfyv S-At-A lcklg CYBL_RHOGR : 16- 21: rarsi SaAevA khnsr GOX_SPIOL : 363- 367: wdgps SrAv-A rl LA2M_MYCSM : 114- 117: hgdaa S-Aq-A sartg LLDD_ECOLI : 285- 289: ldgvl SsAr-A lpaia LLDD_ECOLI : 286- 289: dgvls S-Ar-A lpaia LLDD_HAEIN : 285- 289: ldgvl SsAr-A lppia LLDD_HAEIN : 286- 289: dgvls S-Ar-A lppia MDLB_PSEPU : 254- 258: vkgll S-AedA drcia N 14: 11.5102 9( 8) I-x(2,3)-A-x(1,2)-A Occurences: 9(8) CYB2_HANAN : 259- 265: sapfy IsatAl-A klghp CYB2_YEAST : 91- 97: mnkqk Isp-AevA khnkp CYBL_RHOGR : 15- 21: grars Isa-AevA khnsr GOX_SPIOL : 73- 79: kismp Imi-AptA mqkma LA2M_MYCSM : 98- 105: mffap IgviAlcA qdghg LA2M_MYCSM : 164- 170: laesf Irr-AeeA gydgl LLDD_ECOLI : 113- 119: vsvcp IeevAp-A ikrpm LLDD_HAEIN : 113- 119: vsicp IeevAp-A ikrpm MDLB_PSEPU : 312- 317: rrgsd Ivk-Al-A lgaea O 15: 11.5102 12( 8) I-x(1,3)-E-x-A Occurences: 12(8) CYB2_HANAN : 322- 326: nadrs It--EkA vrhae CYB2_YEAST : 91- 97: mnkqk IspaEvA khnkp CYB2_YEAST : 318- 322: cspee Ii--EaA psdkq CYBL_RHOGR : 15- 21: grars IsaaEvA khnsr GOX_SPIOL : 233- 238: lvkgv Ita-EdA rlavq LA2M_MYCSM : 164- 170: laesf IrraEeA gydgl LLDD_ECOLI : 113- 117: vsvcp Ie--EvA paikr LLDD_ECOLI : 253- 259: mvikg IldpEdA rdavr LLDD_HAEIN : 113- 117: vsicp Ie--EvA paikr LLDD_HAEIN : 253- 259: mvikg IldpEdA kdavr MDLB_PSEPU : 133- 138: fqlyv Ihr-EiA qgmvl MDLB_PSEPU : 262- 266: dadrc Ia--EgA dgvil P 16: 11.5102 10( 8) S-x(3,4)-E-x(0,1)-V Occurences: 10(8) CYB2_HANAN : 211- 217: layyc SaaddE-V tlren CYB2_YEAST : 167- 173: gplqg Smpp-ElV cppya CYB2_YEAST : 226- 232: wayys SgandE-V thren CYB2_YEAST : 461- 467: rqldf SrapiE-V laetm CYBL_RHOGR : 14- 20: rgrar SisaaE-V akhns GOX_SPIOL : 111- 116: sswat Ssve-E-V astgp LA2M_MYCSM : 355- 361: aalgg Skgi-EhV arsll LLDD_ECOLI : 109- 116: tlstv SvcpiEeV apaik LLDD_HAEIN : 109- 116: tlstv SicpiEeV apaik MDLB_PSEPU : 61- 66: dvsrr Slqa-E-V lgkrq Q 17: 11.5102 13( 8) A-x(0,1)-R-x(4,5)-A Occurences: 13(8) CYB2_HANAN : 318- 326: qlyvn AdRsitekA vrhae CYB2_YEAST : 55- 63: tqswt AlRvgailA atssv CYBL_RHOGR : 12- 18: kqrgr A-Rsisa-A evakh GOX_SPIOL : 93- 99: geyat A-Raasa-A gtimt GOX_SPIOL : 144- 151: qlvrr AeRagfk-A ialtv LA2M_MYCSM : 362- 369: giehv A-RsllaeA dlima LLDD_ECOLI : 85- 92: lcgmy ArRgevq-A akaad LLDD_ECOLI : 85- 92: lcgmy A-RrgevqA akaad LLDD_ECOLI : 85- 93: lcgmy ArRgevqaA kaada LLDD_ECOLI : 178- 185: sgpna AmRrylq-A vthpq LLDD_ECOLI : 287- 294: gvlss A-RalpaiA davkg LLDD_HAEIN : 85- 92: acgmy ArRgevq-A aqaad LLDD_HAEIN : 85- 92: acgmy A-RrgevqA aqaad LLDD_HAEIN : 85- 93: acgmy ArRgevqaA qaadn LLDD_HAEIN : 287- 294: gvlss A-RalppiA davkg MDLB_PSEPU : 95- 101: gdlal A-Raatk-A gipfv MDLB_PSEPU : 258- 266: lsaed AdRciaegA dgvil R 18: 11.5102 12( 8) A-x(1,3)-S-x(2)-E Occurences: 12(8) CYB2_HANAN : 293- 299: mistl Asc-SfdE iadar CYB2_HANAN : 318- 324: qlyvn Adr-SitE kavrh CYB2_YEAST : 311- 317: mistl Asc-SpeE iieaa CYBL_RHOGR : 12- 19: kqrgr ArsiSaaE vakhn GOX_SPIOL : 109- 114: tlssw At--SsvE evast GOX_SPIOL : 109- 115: tlssw Ats-SveE vastg LA2M_MYCSM : 46- 52: vlsyv Agg-SgdE htqra LA2M_MYCSM : 131- 136: itstl Av--SslE dirkh LA2M_MYCSM : 219- 224: qkkfk Ah--SgvE aeglr LLDD_ECOLI : 364- 369: mtltg Ak--SisE itqds LLDD_HAEIN : 25- 32: fmfhy AdggSyaE qtlar LLDD_HAEIN : 36- 43: aeqtl ArnvSdlE nialr MDLB_PSEPU : 282- 287: rqldc Ai--SpmE vlaqs S 19: 11.5102 19( 8) A-x(4)-A-x(0,2)-A Occurences: 19(8) CYB2_HANAN : 207- 213: pppal AyycsA--A ddevt CYB2_YEAST : 55- 63: tqswt AlrvgAilA atssv CYBL_RHOGR : 12- 18: kqrgr ArsisA--A evakh GOX_SPIOL : 91- 98: pegey AtaraAs-A agtim GOX_SPIOL : 91- 99: pegey AtaraAsaA gtimt GOX_SPIOL : 93- 99: geyat AraasA--A gtimt GOX_SPIOL : 241- 247: edarl AvqhgA--A giivs GOX_SPIOL : 297- 303: tdvfk AlalgA--A gvfig LA2M_MYCSM : 112- 119: dghgd AasaqAs-A rtgvp LA2M_MYCSM : 327- 334: girtg AdvvkAl-A mgasa LA2M_MYCSM : 332- 339: advvk AlamgAs-A vgigr LA2M_MYCSM : 362- 369: giehv ArsllAe-A dlima LLDD_ECOLI : 6- 12: miisa AsdyrA--A aqril LLDD_ECOLI : 6- 13: miisa AsdyrAa-A qrilp LLDD_ECOLI : 287- 294: gvlss AralpAi-A davkg LLDD_ECOLI : 289- 296: lssar AlpaiAd-A vkgdi LLDD_ECOLI : 337- 345: flyal AtagqAgvA nllnl LLDD_HAEIN : 289- 296: lssar AlppiAd-A vkgdi MDLB_PSEPU : 93- 101: pkgdl AlaraAtkA gipfv MDLB_PSEPU : 258- 266: lsaed AdrciAegA dgvil MDLB_PSEPU : 315- 322: sdivk AlalgAe-A vllgr T 20: 11.5102 12( 8) R-x(0,1)-A-x(4,5)-A Occurences: 12(8) CYB2_HANAN : 441- 448: qldyt R-ApvevlA evmpi CYB2_YEAST : 462- 469: qldfs R-ApievlA etmpi CYBL_RHOGR : 11- 17: vkqrg R-Arsis-A aevak CYBL_RHOGR : 11- 18: vkqrg R-ArsisaA evakh GOX_SPIOL : 146- 153: vrrae R-AgfkaiA ltvdt GOX_SPIOL : 239- 246: taeda RlAvqhg-A agiiv GOX_SPIOL : 239- 247: taeda RlAvqhgaA giivs LA2M_MYCSM : 293- 301: snhgg RqAngglpA ldclp LLDD_ECOLI : 138- 146: drgfm RnAlerakA agcst LLDD_ECOLI : 260- 267: dpeda RdAvrfg-A dgivv LLDD_ECOLI : 288- 294: vlssa R-Alpai-A davkg LLDD_ECOLI : 330- 337: tvllg R-AflyalA tagqa LLDD_HAEIN : 288- 294: vlssa R-Alppi-A davkg MDLB_PSEPU : 327- 334: avllg R-AtlyglA arget Number of patterns evaluated by Pratt:609 Total running time: 1 seconds