------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file FLIP_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FLIP_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FLIP_BACSU 221 FLIP_ECOLI 245 FLIP_RHIME 111 MOPC_ERWCA 258 PRO2_XANCG 214 SPAP_SALTY 224 SPAP_SHIFL 216 YSCR_YERPS 217 Pratt run started at Thu Feb 6 19:29:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 45.3706 8( 8) P-A-x(3)-S-E-x(4)-F-x-I-G-F-x(5)-F-x(3)-D-x(1,2)-V 2: 41.2005 8( 8) A-x(3)-S-E-x(4)-F-x-I-G-F-x(5)-F-x(3)-D-x(1,2)-V 3: 39.7005 8( 8) G-x(5)-P-x(2,4)-I-x(0,2)-P-x-K-x(3)-F-V-x(2)-D-G-W 4: 37.0305 8( 8) S-E-x(4)-F-x-I-G-F-x(5)-F-x(3)-D-x(1,2)-V 5: 36.5305 8( 8) P-x(5)-P-x-K-x(1,2)-L-F-x(0,1)-V-x(2)-D-G-W 6: 35.5305 12( 8) P-x(2,4)-I-x(0,2)-P-x-K-x(3)-F-V-x(2)-D-G-W 7: 32.8604 8( 8) E-x(4)-F-x-I-G-F-x(5)-F-x(3)-D-x(1,2)-V 8: 32.3604 8( 8) I-x(0,2)-P-x-K-x(3)-F-V-x(2)-D-G-W 9: 32.3604 8( 8) K-x(3)-F-V-x(2)-D-G-W-x(1,2)-L-x(3,4)-L 10: 32.3604 8( 8) P-x-K-x(1,2)-L-F-x(0,1)-V-x(2)-D-G-W 11: 32.3604 8( 8) P-x(5)-F-V-x(2)-D-G-W-x(1,2)-L-x(3,4)-L 12: 28.6904 8( 8) F-x-I-G-F-x(5)-F-x(3)-D-x(1,2)-V 13: 28.1904 8( 8) F-V-x(2)-D-G-W-x(1,2)-L-x(3,4)-L 14: 28.1904 8( 8) L-F-x(0,1)-V-x(2)-D-G-W-x(1,2)-L 15: 28.1904 10( 8) L-x(1,2)-F-V-x(2)-D-G-W-x(1,2)-L 16: 28.1904 11( 8) L-x(0,1)-F-V-x(2)-D-G-W-x(1,2)-L 17: 28.1904 8( 8) K-x(1,2)-L-F-x(0,1)-V-x(2)-D-G-W 18: 24.5203 8( 8) I-G-F-x(5)-F-x(3)-D-x(1,2)-V 19: 24.0203 8( 8) V-x(2)-D-G-W-x(1,2)-L-x(3,4)-L 20: 20.3503 8( 8) G-F-x(5)-F-x(3)-D-x(1,2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 90.4535 8( 8) P-A-[FY]-x(2)-S-E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] B 2: 86.2835 8( 8) A-[FY]-x(2)-S-E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] C 3: 85.5352 8( 8) G-[LM]-x(2)-[LMV]-[PST]-P-x(2,4)-I-x(0,2)-P-[FI]-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] D 4: 78.9289 8( 8) S-E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] E 5: 74.7589 8( 8) E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] F 6: 72.3638 12( 8) P-x(2,4)-I-x(0,2)-P-[FI]-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] G 7: 70.3758 8( 8) P-x(2)-[IV]-[AS]-x-P-[FI]-K-x(1,2)-L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] H 8: 66.0226 8( 8) I-x(0,2)-P-x-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] I 9: 64.1321 8( 8) F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] J 10: 63.3137 8( 8) P-[FI]-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] K 11: 59.9620 8( 8) I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] L 12: 59.8018 8( 8) P-[FI]-K-x(1,2)-L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] M 13: 55.9726 8( 8) K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] N 14: 55.7920 8( 8) G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] O 15: 52.4607 8( 8) K-x(1,2)-L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] P 16: 42.4106 8( 8) F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] Q 17: 39.6488 8( 8) L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(4)-[ILV]-x-[QS] R 18: 39.6488 10( 8) L-x(1,2)-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(4)-[ILV]-x-[QS] S 19: 39.6488 11( 8) L-x(0,1)-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(4)-[ILV]-x-[QS] T 20: 38.2406 8( 8) V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 90.4535 8( 8) P-A-[FY]-x(2)-S-E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] Occurences: 8(8) FLIP_BACSU : 150- 192: lttmv PAFaiSELktAFqIGFmIfIPFLIIDm-VVAsvLmsmgMmmlPP vmisl FLIP_BACSU : 150- 193: lttmv PAFaiSELktAFqIGFmIfIPFLIIDmvVASvlMsmgmMmlpPV mislp FLIP_ECOLI : 172- 214: mrill PAYvtSELktAFqIGFtIfIPFLIIDl-VIAsvLmalgMmmvPP atial FLIP_RHIME : 39- 82: lravv PAFmiSEIrrGFeIGFlImLPFLVIDliVATitMamgmMmlpPT aislp MOPC_ERWCA : 185- 227: mrvll PAFvtSELktAFqIGFtVfIPFLIIDl-VVAsvLmalgMmmvPP atisl MOPC_ERWCA : 185- 228: mrvll PAFvtSELktAFqIGFtVfIPFLIIDlvVASvlMalgmMmvpPA tislp PRO2_XANCG : 142- 184: llvla PAFtlSELteAFrIGFlLyLVFIVIDl-VVAnaLmamgLsqvTP tnvai SPAP_SALTY : 148- 190: ifall PAYalSEIksAFkIGFyLyLPFVVVDl-VVSsvLlalgMmmmSP vtist SPAP_SHIFL : 140- 182: lfsll PAYalSEIkdAFkIGFyLyLPFVVVDl-VISsiLlalgMmmmSP itisv YSCR_YERPS : 144- 186: lfill PAFtvSELtrAFeIGFlIyLPFIVIDl-VISniLlamgMmmvSP mtisl B 2: 86.2835 8( 8) A-[FY]-x(2)-S-E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] Occurences: 8(8) FLIP_BACSU : 151- 192: ttmvp AFaiSELktAFqIGFmIfIPFLIIDm-VVAsvLmsmgMmmlPP vmisl FLIP_BACSU : 151- 193: ttmvp AFaiSELktAFqIGFmIfIPFLIIDmvVASvlMsmgmMmlpPV mislp FLIP_ECOLI : 173- 214: rillp AYvtSELktAFqIGFtIfIPFLIIDl-VIAsvLmalgMmmvPP atial FLIP_RHIME : 40- 82: ravvp AFmiSEIrrGFeIGFlImLPFLVIDliVATitMamgmMmlpPT aislp MOPC_ERWCA : 186- 227: rvllp AFvtSELktAFqIGFtVfIPFLIIDl-VVAsvLmalgMmmvPP atisl MOPC_ERWCA : 186- 228: rvllp AFvtSELktAFqIGFtVfIPFLIIDlvVASvlMalgmMmvpPA tislp PRO2_XANCG : 143- 184: lvlap AFtlSELteAFrIGFlLyLVFIVIDl-VVAnaLmamgLsqvTP tnvai SPAP_SALTY : 149- 190: fallp AYalSEIksAFkIGFyLyLPFVVVDl-VVSsvLlalgMmmmSP vtist SPAP_SHIFL : 141- 182: fsllp AYalSEIkdAFkIGFyLyLPFVVVDl-VISsiLlalgMmmmSP itisv YSCR_YERPS : 145- 186: fillp AFtvSELtrAFeIGFlIyLPFIVIDl-VISniLlamgMmmvSP mtisl C 3: 85.5352 8( 8) G-[LM]-x(2)-[LMV]-[PST]-P-x(2,4)-I-x(0,2)-P-[FI]-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 186- 221: vlmsm GMmmLPPvm--IslPFKILLFVLVDGWylIvkSLLqSF FLIP_ECOLI : 208- 243: vlmal GMmmVPPat--IalPFKLMLFVLVDGWqlLvgSLAqSF ys FLIP_RHIME : 75- 110: itmam GMmmLPPta--IslPFKILFFVLIDGWnlLvgSLVrSF i MOPC_ERWCA : 221- 256: vlmal GMmmVPPat--IslPFKLMLFVLVDGWqlLlgSLAqSF ys PRO2_XANCG : 178- 213: almam GLsqVTPtnvaI--PFKLLLFVAMDGWsmLihGLVlSY r SPAP_SALTY : 184- 219: vllal GMmmMSPvt--IstPIKLVLFVALDGWtlLskGLIlQY mdiat SPAP_SHIFL : 176- 211: illal GMmmMSPit--IsvPIKLVLFVALDGWgiLskALIeQY inipa YSCR_YERPS : 180- 215: illam GMmmVSPmt--IslPFKLLLFVLLDGWtrLthGLViSY gg D 4: 78.9289 8( 8) S-E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] Occurences: 8(8) FLIP_BACSU : 155- 192: pafai SELktAFqIGFmIfIPFLIIDm-VVAsvLmsmgMmmlPP vmisl FLIP_BACSU : 155- 193: pafai SELktAFqIGFmIfIPFLIIDmvVASvlMsmgmMmlpPV mislp FLIP_ECOLI : 177- 214: payvt SELktAFqIGFtIfIPFLIIDl-VIAsvLmalgMmmvPP atial FLIP_RHIME : 44- 82: pafmi SEIrrGFeIGFlImLPFLVIDliVATitMamgmMmlpPT aislp MOPC_ERWCA : 190- 227: pafvt SELktAFqIGFtVfIPFLIIDl-VVAsvLmalgMmmvPP atisl MOPC_ERWCA : 190- 228: pafvt SELktAFqIGFtVfIPFLIIDlvVASvlMalgmMmvpPA tislp PRO2_XANCG : 147- 184: paftl SELteAFrIGFlLyLVFIVIDl-VVAnaLmamgLsqvTP tnvai SPAP_SALTY : 153- 190: payal SEIksAFkIGFyLyLPFVVVDl-VVSsvLlalgMmmmSP vtist SPAP_SHIFL : 145- 182: payal SEIkdAFkIGFyLyLPFVVVDl-VISsiLlalgMmmmSP itisv YSCR_YERPS : 149- 186: paftv SELtrAFeIGFlIyLPFIVIDl-VISniLlamgMmmvSP mtisl E 5: 74.7589 8( 8) E-[IL]-x(2)-[AG]-F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] Occurences: 8(8) FLIP_BACSU : 156- 192: afais ELktAFqIGFmIfIPFLIIDm-VVAsvLmsmgMmmlPP vmisl FLIP_BACSU : 156- 193: afais ELktAFqIGFmIfIPFLIIDmvVASvlMsmgmMmlpPV mislp FLIP_ECOLI : 178- 214: ayvts ELktAFqIGFtIfIPFLIIDl-VIAsvLmalgMmmvPP atial FLIP_RHIME : 45- 82: afmis EIrrGFeIGFlImLPFLVIDliVATitMamgmMmlpPT aislp MOPC_ERWCA : 191- 227: afvts ELktAFqIGFtVfIPFLIIDl-VVAsvLmalgMmmvPP atisl MOPC_ERWCA : 191- 228: afvts ELktAFqIGFtVfIPFLIIDlvVASvlMalgmMmvpPA tislp PRO2_XANCG : 148- 184: aftls ELteAFrIGFlLyLVFIVIDl-VVAnaLmamgLsqvTP tnvai SPAP_SALTY : 154- 190: ayals EIksAFkIGFyLyLPFVVVDl-VVSsvLlalgMmmmSP vtist SPAP_SHIFL : 146- 182: ayals EIkdAFkIGFyLyLPFVVVDl-VISsiLlalgMmmmSP itisv YSCR_YERPS : 150- 186: aftvs ELtrAFeIGFlIyLPFIVIDl-VISniLlamgMmmvSP mtisl F 6: 72.3638 12( 8) P-x(2,4)-I-x(0,2)-P-[FI]-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] Occurences: 12(8) FLIP_BACSU : 191- 221: gmmml Ppvm-IslPFKILLFVLVDGWylIvkSLLqSF FLIP_BACSU : 192- 221: mmmlp Pvm--IslPFKILLFVLVDGWylIvkSLLqSF FLIP_ECOLI : 213- 243: gmmmv Ppat-IalPFKLMLFVLVDGWqlLvgSLAqSF ys FLIP_ECOLI : 214- 243: mmmvp Pat--IalPFKLMLFVLVDGWqlLvgSLAqSF ys FLIP_RHIME : 80- 110: gmmml Ppta-IslPFKILFFVLIDGWnlLvgSLVrSF i FLIP_RHIME : 81- 110: mmmlp Pta--IslPFKILFFVLIDGWnlLvgSLVrSF i MOPC_ERWCA : 226- 256: gmmmv Ppat-IslPFKLMLFVLVDGWqlLlgSLAqSF ys MOPC_ERWCA : 227- 256: mmmvp Pat--IslPFKLMLFVLVDGWqlLlgSLAqSF ys PRO2_XANCG : 184- 213: lsqvt PtnvaI--PFKLLLFVAMDGWsmLihGLVlSY r SPAP_SALTY : 190- 219: mmmms Pvt--IstPIKLVLFVALDGWtlLskGLIlQY mdiat SPAP_SHIFL : 182- 211: mmmms Pit--IsvPIKLVLFVALDGWgiLskALIeQY inipa YSCR_YERPS : 186- 215: mmmvs Pmt--IslPFKLLLFVLLDGWtrLthGLViSY gg G 7: 70.3758 8( 8) P-x(2)-[IV]-[AS]-x-P-[FI]-K-x(1,2)-L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 192- 221: mmmlp PvmISlPFKilLF-VLVDGWylIvkSLLqSF FLIP_ECOLI : 214- 243: mmmvp PatIAlPFKlmLF-VLVDGWqlLvgSLAqSF ys FLIP_RHIME : 81- 110: mmmlp PtaISlPFKi-LFfVLIDGWnlLvgSLVrSF i MOPC_ERWCA : 227- 256: mmmvp PatISlPFKlmLF-VLVDGWqlLlgSLAqSF ys PRO2_XANCG : 184- 213: lsqvt PtnVAiPFKllLF-VAMDGWsmLihGLVlSY r SPAP_SALTY : 190- 219: mmmms PvtIStPIKlvLF-VALDGWtlLskGLIlQY mdiat SPAP_SHIFL : 182- 211: mmmms PitISvPIKlvLF-VALDGWgiLskALIeQY inipa YSCR_YERPS : 186- 215: mmmvs PmtISlPFKllLF-VLLDGWtrLthGLViSY gg H 8: 66.0226 8( 8) I-x(0,2)-P-x-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 195- 221: lppvm IslPfKILLFVLVDGWylIvkSLLqSF FLIP_ECOLI : 217- 243: vppat IalPfKLMLFVLVDGWqlLvgSLAqSF ys FLIP_RHIME : 84- 110: lppta IslPfKILFFVLIDGWnlLvgSLVrSF i MOPC_ERWCA : 230- 256: vppat IslPfKLMLFVLVDGWqlLlgSLAqSF ys PRO2_XANCG : 189- 213: ptnva I--PfKLLLFVAMDGWsmLihGLVlSY r SPAP_SALTY : 193- 219: mspvt IstPiKLVLFVALDGWtlLskGLIlQY mdiat SPAP_SHIFL : 185- 211: mspit IsvPiKLVLFVALDGWgiLskALIeQY inipa YSCR_YERPS : 189- 215: vspmt IslPfKLLLFVLLDGWtrLthGLViSY gg I 9: 64.1321 8( 8) F-x-I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] Occurences: 8(8) FLIP_BACSU : 161- 192: elkta FqIGFmIfIPFLIIDm-VVAsvLmsmgMmmlPP vmisl FLIP_BACSU : 161- 193: elkta FqIGFmIfIPFLIIDmvVASvlMsmgmMmlpPV mislp FLIP_ECOLI : 183- 214: elkta FqIGFtIfIPFLIIDl-VIAsvLmalgMmmvPP atial FLIP_RHIME : 50- 82: eirrg FeIGFlImLPFLVIDliVATitMamgmMmlpPT aislp MOPC_ERWCA : 196- 227: elkta FqIGFtVfIPFLIIDl-VVAsvLmalgMmmvPP atisl MOPC_ERWCA : 196- 228: elkta FqIGFtVfIPFLIIDlvVASvlMalgmMmvpPA tislp PRO2_XANCG : 153- 184: eltea FrIGFlLyLVFIVIDl-VVAnaLmamgLsqvTP tnvai SPAP_SALTY : 159- 190: eiksa FkIGFyLyLPFVVVDl-VVSsvLlalgMmmmSP vtist SPAP_SHIFL : 151- 182: eikda FkIGFyLyLPFVVVDl-VISsiLlalgMmmmSP itisv YSCR_YERPS : 155- 186: eltra FeIGFlIyLPFIVIDl-VISniLlamgMmmvSP mtisl J 10: 63.3137 8( 8) P-[FI]-K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 198- 221: vmisl PFKILLFVLVDGWy-LivksLLqSF FLIP_ECOLI : 220- 243: atial PFKLMLFVLVDGWqlLvgs-LAqSF ys FLIP_ECOLI : 220- 243: atial PFKLMLFVLVDGWq-LlvgsLAqSF ys FLIP_RHIME : 87- 110: taisl PFKILFFVLIDGWnlLvgs-LVrSF i FLIP_RHIME : 87- 110: taisl PFKILFFVLIDGWn-LlvgsLVrSF i MOPC_ERWCA : 233- 256: atisl PFKLMLFVLVDGWqlLlgs-LAqSF ys MOPC_ERWCA : 233- 256: atisl PFKLMLFVLVDGWq-LllgsLAqSF ys PRO2_XANCG : 190- 213: tnvai PFKLLLFVAMDGWsmLihg-LVlSY r SPAP_SALTY : 196- 219: vtist PIKLVLFVALDGWtlLskg-LIlQY mdiat SPAP_SALTY : 196- 219: vtist PIKLVLFVALDGWt-LlskgLIlQY mdiat SPAP_SHIFL : 188- 211: itisv PIKLVLFVALDGWgiLska-LIeQY inipa YSCR_YERPS : 192- 215: mtisl PFKLLLFVLLDGWtrLthg-LViSY gg K 11: 59.9620 8( 8) I-G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] Occurences: 8(8) FLIP_BACSU : 163- 192: ktafq IGFmIfIPFLIIDm-VVAsvLmsmgMmmlPP vmisl FLIP_BACSU : 163- 193: ktafq IGFmIfIPFLIIDmvVASvlMsmgmMmlpPV mislp FLIP_ECOLI : 185- 214: ktafq IGFtIfIPFLIIDl-VIAsvLmalgMmmvPP atial FLIP_RHIME : 52- 82: rrgfe IGFlImLPFLVIDliVATitMamgmMmlpPT aislp MOPC_ERWCA : 198- 227: ktafq IGFtVfIPFLIIDl-VVAsvLmalgMmmvPP atisl MOPC_ERWCA : 198- 228: ktafq IGFtVfIPFLIIDlvVASvlMalgmMmvpPA tislp PRO2_XANCG : 155- 184: teafr IGFlLyLVFIVIDl-VVAnaLmamgLsqvTP tnvai SPAP_SALTY : 161- 190: ksafk IGFyLyLPFVVVDl-VVSsvLlalgMmmmSP vtist SPAP_SHIFL : 153- 182: kdafk IGFyLyLPFVVVDl-VISsiLlalgMmmmSP itisv YSCR_YERPS : 157- 186: trafe IGFlIyLPFIVIDl-VISniLlamgMmmvSP mtisl L 12: 59.8018 8( 8) P-[FI]-K-x(1,2)-L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 198- 221: vmisl PFKilLF-VLVDGWylIvkSLLqSF FLIP_ECOLI : 220- 243: atial PFKlmLF-VLVDGWqlLvgSLAqSF ys FLIP_RHIME : 87- 110: taisl PFKi-LFfVLIDGWnlLvgSLVrSF i MOPC_ERWCA : 233- 256: atisl PFKlmLF-VLVDGWqlLlgSLAqSF ys PRO2_XANCG : 190- 213: tnvai PFKllLF-VAMDGWsmLihGLVlSY r SPAP_SALTY : 196- 219: vtist PIKlvLF-VALDGWtlLskGLIlQY mdiat SPAP_SHIFL : 188- 211: itisv PIKlvLF-VALDGWgiLskALIeQY inipa YSCR_YERPS : 192- 215: mtisl PFKllLF-VLLDGWtrLthGLViSY gg M 13: 55.9726 8( 8) K-[IL]-[LMV]-[FL]-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 200- 221: islpf KILLFVLVDGWy-LivksLLqSF FLIP_ECOLI : 222- 243: ialpf KLMLFVLVDGWqlLvgs-LAqSF ys FLIP_ECOLI : 222- 243: ialpf KLMLFVLVDGWq-LlvgsLAqSF ys FLIP_RHIME : 89- 110: islpf KILFFVLIDGWnlLvgs-LVrSF i FLIP_RHIME : 89- 110: islpf KILFFVLIDGWn-LlvgsLVrSF i MOPC_ERWCA : 235- 256: islpf KLMLFVLVDGWqlLlgs-LAqSF ys MOPC_ERWCA : 235- 256: islpf KLMLFVLVDGWq-LllgsLAqSF ys PRO2_XANCG : 192- 213: vaipf KLLLFVAMDGWsmLihg-LVlSY r SPAP_SALTY : 198- 219: istpi KLVLFVALDGWtlLskg-LIlQY mdiat SPAP_SALTY : 198- 219: istpi KLVLFVALDGWt-LlskgLIlQY mdiat SPAP_SHIFL : 190- 211: isvpi KLVLFVALDGWgiLska-LIeQY inipa YSCR_YERPS : 194- 215: islpf KLLLFVLLDGWtrLthg-LViSY gg N 14: 55.7920 8( 8) G-F-x-[ILV]-x-[IL]-[PV]-F-[ILV]-[IV]-[IV]-D-x(1,2)-V-[AIV]-[AST]-x(2)-[LM]-x(4)-[LM]-x(3)-[PST]-[APTV] Occurences: 8(8) FLIP_BACSU : 164- 192: tafqi GFmIfIPFLIIDm-VVAsvLmsmgMmmlPP vmisl FLIP_BACSU : 164- 193: tafqi GFmIfIPFLIIDmvVASvlMsmgmMmlpPV mislp FLIP_ECOLI : 186- 214: tafqi GFtIfIPFLIIDl-VIAsvLmalgMmmvPP atial FLIP_RHIME : 53- 82: rgfei GFlImLPFLVIDliVATitMamgmMmlpPT aislp MOPC_ERWCA : 199- 227: tafqi GFtVfIPFLIIDl-VVAsvLmalgMmmvPP atisl MOPC_ERWCA : 199- 228: tafqi GFtVfIPFLIIDlvVASvlMalgmMmvpPA tislp PRO2_XANCG : 156- 184: eafri GFlLyLVFIVIDl-VVAnaLmamgLsqvTP tnvai SPAP_SALTY : 162- 190: safki GFyLyLPFVVVDl-VVSsvLlalgMmmmSP vtist SPAP_SHIFL : 154- 182: dafki GFyLyLPFVVVDl-VISsiLlalgMmmmSP itisv YSCR_YERPS : 158- 186: rafei GFlIyLPFIVIDl-VISniLlamgMmmvSP mtisl O 15: 52.4607 8( 8) K-x(1,2)-L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(2)-[IL]-x(2)-[AGS]-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 200- 221: islpf KilLF-VLVDGWylIvkSLLqSF FLIP_ECOLI : 222- 243: ialpf KlmLF-VLVDGWqlLvgSLAqSF ys FLIP_RHIME : 89- 110: islpf Ki-LFfVLIDGWnlLvgSLVrSF i MOPC_ERWCA : 235- 256: islpf KlmLF-VLVDGWqlLlgSLAqSF ys PRO2_XANCG : 192- 213: vaipf KllLF-VAMDGWsmLihGLVlSY r SPAP_SALTY : 198- 219: istpi KlvLF-VALDGWtlLskGLIlQY mdiat SPAP_SHIFL : 190- 211: isvpi KlvLF-VALDGWgiLskALIeQY inipa YSCR_YERPS : 194- 215: islpf KllLF-VLLDGWtrLthGLViSY gg P 16: 42.4106 8( 8) F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 204- 221: fkill FVLVDGWy-LivksLLqSF FLIP_ECOLI : 226- 243: fklml FVLVDGWqlLvgs-LAqSF ys FLIP_ECOLI : 226- 243: fklml FVLVDGWq-LlvgsLAqSF ys FLIP_RHIME : 93- 110: fkilf FVLIDGWnlLvgs-LVrSF i FLIP_RHIME : 93- 110: fkilf FVLIDGWn-LlvgsLVrSF i MOPC_ERWCA : 239- 256: fklml FVLVDGWqlLlgs-LAqSF ys MOPC_ERWCA : 239- 256: fklml FVLVDGWq-LllgsLAqSF ys PRO2_XANCG : 196- 213: fklll FVAMDGWsmLihg-LVlSY r SPAP_SALTY : 202- 219: iklvl FVALDGWtlLskg-LIlQY mdiat SPAP_SALTY : 202- 219: iklvl FVALDGWt-LlskgLIlQY mdiat SPAP_SHIFL : 194- 211: iklvl FVALDGWgiLska-LIeQY inipa YSCR_YERPS : 198- 215: fklll FVLLDGWtrLthg-LViSY gg Q 17: 39.6488 8( 8) L-F-x(0,1)-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(4)-[ILV]-x-[QS] Occurences: 8(8) FLIP_BACSU : 203- 219: pfkil LF-VLVDGWy-LivksLlQ sf FLIP_ECOLI : 225- 241: pfklm LF-VLVDGWq-LlvgsLaQ sfys FLIP_RHIME : 91- 109: lpfki LFfVLIDGWnlLvgslVrS fi MOPC_ERWCA : 238- 254: pfklm LF-VLVDGWq-LllgsLaQ sfys PRO2_XANCG : 195- 212: pfkll LF-VAMDGWsmLihglVlS yr SPAP_SALTY : 201- 218: piklv LF-VALDGWtlLskglIlQ ymdia SPAP_SHIFL : 193- 210: piklv LF-VALDGWgiLskalIeQ yinip YSCR_YERPS : 197- 214: pfkll LF-VLLDGWtrLthglViS ygg R 18: 39.6488 10( 8) L-x(1,2)-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(4)-[ILV]-x-[QS] Occurences: 10(8) FLIP_BACSU : 202- 219: lpfki Ll-FVLVDGWy-LivksLlQ sf FLIP_ECOLI : 223- 241: alpfk LmlFVLVDGWq-LlvgsLaQ sfys FLIP_RHIME : 91- 109: lpfki Lf-FVLIDGWnlLvgslVrS fi MOPC_ERWCA : 236- 254: slpfk LmlFVLVDGWq-LllgsLaQ sfys PRO2_XANCG : 193- 212: aipfk LllFVAMDGWsmLihglVlS yr PRO2_XANCG : 194- 212: ipfkl Ll-FVAMDGWsmLihglVlS yr SPAP_SALTY : 199- 218: stpik LvlFVALDGWtlLskglIlQ ymdia SPAP_SHIFL : 191- 210: svpik LvlFVALDGWgiLskalIeQ yinip YSCR_YERPS : 195- 214: slpfk LllFVLLDGWtrLthglViS ygg YSCR_YERPS : 196- 214: lpfkl Ll-FVLLDGWtrLthglViS ygg S 19: 39.6488 11( 8) L-x(0,1)-F-V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(4)-[ILV]-x-[QS] Occurences: 11(8) FLIP_BACSU : 202- 219: lpfki LlFVLVDGWy-LivksLlQ sf FLIP_BACSU : 203- 219: pfkil L-FVLVDGWy-LivksLlQ sf FLIP_ECOLI : 225- 241: pfklm L-FVLVDGWq-LlvgsLaQ sfys FLIP_RHIME : 91- 109: lpfki LfFVLIDGWnlLvgslVrS fi MOPC_ERWCA : 238- 254: pfklm L-FVLVDGWq-LllgsLaQ sfys PRO2_XANCG : 194- 212: ipfkl LlFVAMDGWsmLihglVlS yr PRO2_XANCG : 195- 212: pfkll L-FVAMDGWsmLihglVlS yr SPAP_SALTY : 201- 218: piklv L-FVALDGWtlLskglIlQ ymdia SPAP_SHIFL : 193- 210: piklv L-FVALDGWgiLskalIeQ yinip YSCR_YERPS : 196- 214: lpfkl LlFVLLDGWtrLthglViS ygg YSCR_YERPS : 197- 214: pfkll L-FVLLDGWtrLthglViS ygg T 20: 38.2406 8( 8) V-[AL]-[ILMV]-D-G-W-x(1,2)-L-x(3,4)-L-[AILV]-x-[QS]-[FY] Occurences: 8(8) FLIP_BACSU : 205- 221: killf VLVDGWy-LivksLLqSF FLIP_ECOLI : 227- 243: klmlf VLVDGWqlLvgs-LAqSF ys FLIP_ECOLI : 227- 243: klmlf VLVDGWq-LlvgsLAqSF ys FLIP_RHIME : 94- 110: kilff VLIDGWnlLvgs-LVrSF i FLIP_RHIME : 94- 110: kilff VLIDGWn-LlvgsLVrSF i MOPC_ERWCA : 240- 256: klmlf VLVDGWqlLlgs-LAqSF ys MOPC_ERWCA : 240- 256: klmlf VLVDGWq-LllgsLAqSF ys PRO2_XANCG : 197- 213: klllf VAMDGWsmLihg-LVlSY r SPAP_SALTY : 203- 219: klvlf VALDGWtlLskg-LIlQY mdiat SPAP_SALTY : 203- 219: klvlf VALDGWt-LlskgLIlQY mdiat SPAP_SHIFL : 195- 211: klvlf VALDGWgiLska-LIeQY inipa YSCR_YERPS : 199- 215: klllf VLLDGWtrLthg-LViSY gg Number of patterns evaluated by Pratt:2145 Total running time: 1 seconds