------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file FLAGELLA_BB_ROD PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FLAGELLA_BB_ROD.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FLA1_BORBU 336 FLGB_BACSU 129 FLGB_SALTY 137 FLGC_BACSU 150 FLGC_SALTY 134 FLGE_CAUCR 52 FLGE_SALTY 402 FLGF_CAUCR 248 FLGF_SALTY 251 FLGG_BACSU 264 FLGG_CAUCR 262 FLGG_SALTY 260 FLGK_BACSU 129 FLGK_ECOLI 12 FLGK_SALTY 552 FLHO_BACSU 271 FLHP_BACSU 135 Pratt run started at Thu Feb 6 19:29:42 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 8.3401 54( 17) A-N 2: 7.8401 40( 17) L-x(1,2)-N 3: 7.8401 50( 17) A-x(0,1)-L 4: 7.8401 85( 17) A-x(2,3)-A 5: 7.8401 66( 17) N-x(0,1)-A 6: 7.3401 50( 17) D-x(1,3)-N 7: 7.3401 35( 17) I-x(1,3)-D 8: 7.3401 33( 17) I-x(0,2)-D 9: 7.3401 58( 17) A-x(1,3)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 10.2767 32( 17) A-N-x(4)-[AGNQT] B 2: 7.8401 40( 17) L-x(1,2)-N C 3: 7.8401 50( 17) A-x(0,1)-L D 4: 7.8401 85( 17) A-x(2,3)-A E 5: 7.8401 66( 17) N-x(0,1)-A F 6: 7.3401 50( 17) D-x(1,3)-N G 7: 7.3401 35( 17) I-x(1,3)-D H 8: 7.3401 33( 17) I-x(0,2)-D I 9: 7.3401 58( 17) A-x(1,3)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 10.2767 32( 17) A-N-x(4)-[AGNQT] Occurences: 32(17) FLA1_BORBU : 21- 27: ngina ANlsktQ eklss FLA1_BORBU : 265- 271: isdqr ANlgafQ nrles FLGB_BACSU : 30- 36: itnni ANidtpN ykakk FLGB_SALTY : 30- 36: laani ANadtpG yqard FLGC_BACSU : 130- 136: trsye ANvtamN atkgm FLGC_SALTY : 29- 35: aasnl ANadsvT gpdgq FLGC_SALTY : 114- 120: srtyq ANievlN tvksm FLGE_CAUCR : 16- 22: vsgli ANssalA aisdn FLGE_CAUCR : 29- 35: isdni ANvntvG fkrst FLGE_SALTY : 24- 30: ignni ANsatyG fksgt FLGE_SALTY : 131- 137: tiqqg ANpapiT ipntl FLGE_SALTY : 272- 278: qqntg ANnivaT nqngy FLGE_SALTY : 320- 326: vlanf ANneglA sqgdn FLGF_CAUCR : 23- 29: eldiv ANnianA nttgf FLGF_CAUCR : 27- 33: vanni ANanttG fkved FLGF_SALTY : 27- 33: tasnl ANastpG fraql FLGG_BACSU : 27- 33: ignni ANvntvG fkksr FLGG_BACSU : 205- 211: gtasa ANqpgdG gtgal FLGG_CAUCR : 26- 32: isnni ANmntvG fkrqr FLGG_CAUCR : 176- 182: gqiql ANflneG gleai FLGG_SALTY : 27- 33: iannl ANvstnG fkrqr FLGG_SALTY : 144- 150: aitip ANalsiT igrdg FLGK_BACSU : 26- 32: alstt ANnvanA ntdgy FLGK_BACSU : 30- 36: tannv ANantdG ytrqr FLGK_BACSU : 32- 38: nnvan ANtdgyT rqrvs FLGK_ECOLI : 1- 7: ANaifdA linir FLGK_SALTY : 43- 49: tilaq ANstlgA ggwig FLGK_SALTY : 533- 539: qqyyl ANaqvlQ tanal FLGK_SALTY : 541- 547: qvlqt ANalfdA llnir FLHO_BACSU : 27- 33: lsnni ANantsG ykadq FLHO_BACSU : 249- 255: yrsfe ANqkviQ aydks FLHP_BACSU : 129- 135: vtpsa ANanqlQ B 2: 7.8401 40( 17) L-x(1,2)-N Occurences: 40(17) FLA1_BORBU : 136- 138: nqmhm Ls-N ksasq FLGB_BACSU : 11- 13: gtiqn Le-N alsra FLGB_BACSU : 100- 103: kemte LaqN qinyq FLGB_SALTY : 25- 28: qrqei LaaN ianad FLGB_SALTY : 94- 97: pdqps LdgN tvdmd FLGC_BACSU : 28- 30: vvssn La-N mdttr FLGC_SALTY : 3- 5: ma Ll-N ifdia FLGC_SALTY : 28- 30: vaasn La-N adsvt FLGE_CAUCR : 14- 17: agvsg LiaN ssala FLGE_SALTY : 101- 104: ngqfk LdeN rnlvn FLGE_SALTY : 107- 109: denrn Lv-N mqgmq FLGE_SALTY : 229- 232: tastt LkfN engil FLGE_SALTY : 316- 318: lgqiv La-N fanne FLGE_SALTY : 355- 357: gnfgk Lt-N galea FLGE_SALTY : 371- 373: dlske Lv-N mivaq FLGE_SALTY : 398- 400: qilnt Lv-N lr FLGF_CAUCR : 84- 87: ggdyd LaiN gmgff FLGF_CAUCR : 177- 180: kdgdn LyrN ttnta FLGF_SALTY : 26- 28: vtasn La-N astpg FLGG_BACSU : 120- 122: agnfy Ld-N tgtlv FLGG_BACSU : 135- 138: dgyhv LnmN ggtik FLGG_BACSU : 259- 261: eilqe Lv-N lkr FLGG_CAUCR : 175- 177: vgqiq La-N flneg FLGG_SALTY : 26- 28: viann La-N vstng FLGG_SALTY : 230- 232: nvaee Lv-N miqvq FLGK_BACSU : 87- 89: dyqyr Lq-N nsagy FLGK_BACSU : 87- 90: dyqyr LqnN sagyy FLGK_ECOLI : 8- 10: aifda Li-N ir FLGK_SALTY : 3- 5: ss Li-N hamsg FLGK_SALTY : 119- 122: tslqt LvsN aedpa FLGK_SALTY : 139- 141: gkaeg Lv-N qfktt FLGK_SALTY : 273- 275: eipek Ll-N tgslg FLGK_SALTY : 461- 463: qalld Lq-N snvvg FLGK_SALTY : 532- 534: yqqyy La-N aqvlq FLGK_SALTY : 548- 550: alfda Ll-N ir FLHO_BACSU : 22- 24: rrtem Ls-N niana FLHO_BACSU : 22- 25: rrtem LsnN ianan FLHO_BACSU : 97- 100: ptdia LieN qvpms FLHO_BACSU : 134- 137: sstfs LneN nqlti FLHO_BACSU : 140- 143: nennq LtiN grpil FLHP_BACSU : 26- 28: tissn Ls-N snttg FLHP_BACSU : 106- 109: spyqy LqvN vngnr C 3: 7.8401 50( 17) A-x(0,1)-L Occurences: 50(17) FLA1_BORBU : 21- 23: ngina AnL sktqe FLA1_BORBU : 162- 164: kintp AsL sgsqa FLA1_BORBU : 195- 197: yaanv AnL fsgeg FLA1_BORBU : 265- 267: isdqr AnL gafqn FLGB_BACSU : 14- 15: qnlen A-L sradi FLGB_BACSU : 109- 110: qinyq A-L vermn FLGB_SALTY : 6- 8: ldrld AaL rfqqe FLGB_SALTY : 7- 8: drlda A-L rfqqe FLGB_SALTY : 14- 15: rfqqe A-L nlraq FLGB_SALTY : 63- 64: etggv A-L tltss FLGC_BACSU : 13- 14: nvsas A-L taqrv FLGC_BACSU : 145- 146: gmlmk A-L eigk FLGC_SALTY : 2- 3: m A-L lnifd FLGC_SALTY : 2- 4: m AlL nifdi FLGC_SALTY : 13- 14: diags A-L aaqsk FLGE_CAUCR : 6- 8: msins AmL agvsg FLGE_CAUCR : 20- 21: ianss A-L aaisd FLGE_SALTY : 342- 343: qasgv A-L lgtag FLGE_SALTY : 342- 344: qasgv AlL gtags FLGE_SALTY : 359- 360: kltng A-L easnv FLGF_CAUCR : 4- 5: mdn A-L yvgls FLGF_CAUCR : 231- 233: mmdnt AeL srtps FLGF_SALTY : 36- 38: tpgfr AqL nalra FLGF_SALTY : 40- 41: raqln A-L ravpv FLGF_SALTY : 81- 82: rpldv A-L qqdgw FLGF_SALTY : 145- 146: dgtis A-L npgdp FLGF_SALTY : 191- 193: qaerg AvL aadps FLGG_BACSU : 215- 216: dggtg A-L ksgfl FLGG_CAUCR : 3- 4: mq A-L rtaas FLGG_CAUCR : 201- 203: aasga AtL vrras FLGG_CAUCR : 210- 211: rrasr A-L acccs FLGG_CAUCR : 232- 233: vseit A-L itaqr FLGG_SALTY : 146- 147: tipan A-L sitig FLGG_SALTY : 211- 213: pglng AgL lyqgy FLGK_BACSU : 14- 15: etarr A-L saqqa FLGK_BACSU : 20- 22: lsaqq AaL sttan FLGK_BACSU : 21- 22: saqqa A-L sttan FLGK_BACSU : 101- 102: dtkak A-L sqmeg FLGK_ECOLI : 7- 8: naifd A-L inir FLGK_SALTY : 16- 18: lnaaq AaL ntvsn FLGK_SALTY : 17- 18: naaqa A-L ntvsn FLGK_SALTY : 131- 132: paarq A-L igkae FLGK_SALTY : 176- 178: yakqi AnL ndqis FLGK_SALTY : 301- 302: tlgql A-L afada FLGK_SALTY : 457- 458: nrngq A-L ldlqn FLGK_SALTY : 457- 459: nrngq AlL dlqns FLGK_SALTY : 478- 480: fnday AtL vsdvg FLGK_SALTY : 543- 544: lqtan A-L fdall FLGK_SALTY : 547- 548: nalfd A-L lnir FLGK_SALTY : 547- 549: nalfd AlL nir FLHO_BACSU : 96- 97: qptdi A-L ienqv FLHO_BACSU : 112- 114: etnek AaL fypvq FLHO_BACSU : 113- 114: tneka A-L fypvq FLHP_BACSU : 121- 122: ytrdg A-L yvtps D 4: 7.8401 85( 17) A-x(2,3)-A Occurences: 85(17) FLA1_BORBU : 9- 12: nhnts Ain-A srnng FLA1_BORBU : 39- 43: yrinr AsddA agmgv FLA1_BORBU : 125- 128: einri Adq-A qynqm FLA1_BORBU : 191- 195: avniy AanvA nlfsg FLA1_BORBU : 192- 195: vniya Anv-A nlfsg FLA1_BORBU : 203- 206: fsgeg Aqt-A qaapv FLA1_BORBU : 206- 209: egaqt Aqa-A pvqeg FLA1_BORBU : 220- 224: vqqeg AqqpA patap FLA1_BORBU : 224- 228: gaqqp ApatA psqgg FLA1_BORBU : 265- 269: isdqr AnlgA fqnrl FLA1_BORBU : 290- 293: ienlk Asy-A qikda FLA1_BORBU : 319- 322: tqsam Ami-A qanqv FLGB_BACSU : 14- 18: qnlen AlsrA dikqk FLGB_SALTY : 26- 30: rqeil AaniA nadtp FLGB_SALTY : 27- 30: qeila Ani-A nadtp FLGC_BACSU : 13- 16: nvsas Alt-A qrvrm FLGC_BACSU : 130- 134: trsye AnvtA mnatk FLGC_BACSU : 134- 137: eanvt Amn-A tkgml FLGC_SALTY : 10- 13: nifdi Ags-A laaqs FLGC_SALTY : 13- 16: diags Ala-A qskrl FLGC_SALTY : 25- 29: rlnva AsnlA nadsv FLGC_SALTY : 54- 58: fqvda ApgqA tggvk FLGE_CAUCR : 6- 9: msins Aml-A gvsgl FLGE_CAUCR : 16- 20: vsgli AnssA laais FLGE_CAUCR : 20- 23: ianss Ala-A isdni FLGE_SALTY : 24- 27: ignni Ans-A tygfk FLGE_SALTY : 36- 39: fksgt Asf-A dmfag FLGE_SALTY : 39- 43: gtasf AdmfA gskvg FLGE_SALTY : 131- 134: tiqqg Anp-A pitip FLGE_SALTY : 218- 221: dssdp Aat-A pttas FLGE_SALTY : 221- 225: dpaat ApttA sttlk FLGE_SALTY : 253- 256: gting Ata-A tfsls FLGE_SALTY : 317- 320: gqivl Anf-A nnegl FLGE_SALTY : 334- 338: gdnvw AatqA sgval FLGE_SALTY : 335- 338: dnvwa Atq-A sgval FLGE_SALTY : 338- 342: waatq AsgvA llgta FLGE_SALTY : 359- 362: kltng Ale-A snvdl FLGF_CAUCR : 23- 27: eldiv AnniA nantt FLGF_CAUCR : 46- 49: vrteq Akp-A ktldg FLGF_SALTY : 4- 8: mdh AiytA mgaas FLGF_SALTY : 8- 11: haiyt Amg-A asqtl FLGF_SALTY : 8- 12: haiyt AmgaA sqtln FLGF_SALTY : 20- 23: tlnqq Avt-A snlan FLGF_SALTY : 23- 27: qqavt AsnlA nastp FLGF_SALTY : 36- 40: tpgfr AqlnA lravp FLGF_SALTY : 40- 43: raqln Alr-A vpvdg FLGF_SALTY : 92- 96: wlvvq AadgA egytr FLGF_SALTY : 93- 96: lvvqa Adg-A egytr FLGF_SALTY : 183- 187: lfrlt AeaqA ergav FLGF_SALTY : 187- 191: taeaq AergA vlaad FLGF_SALTY : 191- 194: qaerg Avl-A adpsi FLGF_SALTY : 191- 195: qaerg AvlaA dpsir FLGG_BACSU : 50- 54: vsqti AggsA agati FLGG_BACSU : 54- 57: iaggs Aag-A tiggt FLGG_BACSU : 111- 115: tgdgt AytrA gnfyl FLGG_BACSU : 202- 205: lnsgt Asa-A nqpgd FLGG_CAUCR : 3- 7: mq AlrtA asgma FLGG_CAUCR : 8- 12: alrta AsgmA aqqln FLGG_CAUCR : 113- 117: psget AytrA gnfst FLGG_CAUCR : 196- 200: lflet AasgA atlvr FLGG_CAUCR : 197- 200: fleta Asg-A atlvr FLGG_CAUCR : 197- 201: fleta AsgaA tlvrr FLGG_CAUCR : 207- 210: tlvrr Asr-A laccc FLGG_CAUCR : 232- 236: vseit AlitA qraye FLGG_CAUCR : 236- 239: talit Aqr-A yemns FLGG_SALTY : 23- 27: nmdvi AnnlA nvstn FLGK_BACSU : 11- 14: mglet Arr-A lsaqq FLGK_BACSU : 14- 17: etarr Als-A qqaal FLGK_BACSU : 17- 20: rrals Aqq-A alstt FLGK_BACSU : 17- 21: rrals AqqaA lstta FLGK_BACSU : 26- 30: alstt AnnvA nantd FLGK_BACSU : 57- 61: avskn AektA gqmgt FLGK_ECOLI : 3- 7: an AifdA linir FLGK_SALTY : 13- 16: msgln Aaq-A alntv FLGK_SALTY : 13- 17: msgln AaqaA lntvs FLGK_SALTY : 14- 17: sglna Aqa-A lntvs FLGK_SALTY : 123- 127: tlvsn AedpA arqal FLGK_SALTY : 127- 131: naedp AarqA ligka FLGK_SALTY : 128- 131: aedpa Arq-A ligka FLGK_SALTY : 172- 176: qinny AkqiA nlndq FLGK_SALTY : 240- 244: vqgst ArqlA avpss FLGK_SALTY : 301- 305: tlgql AlafA dafna FLGK_SALTY : 303- 307: gqlal AfadA fnaqh FLGK_SALTY : 307- 310: lafad Afn-A qhtkg FLGK_SALTY : 384- 388: nttft AtkdA dgkle FLGK_SALTY : 431- 434: kvtne Aei-A mases FLGK_SALTY : 543- 547: lqtan AlfdA llnir FLHO_BACSU : 8- 11: kglyt Ats-A miaqq FLHO_BACSU : 11- 14: ytats Ami-A qqrrt FLHP_BACSU : 128- 131: yvtps Aan-A nqlq E 5: 7.8401 66( 17) N-x(0,1)-A Occurences: 66(17) FLA1_BORBU : 11- 12: ntsai N-A srnng FLA1_BORBU : 19- 20: rnngi N-A anlsk FLA1_BORBU : 19- 21: rnngi NaA nlskt FLA1_BORBU : 37- 39: sgyri NrA sddaa FLA1_BORBU : 53- 54: vsgki N-A qirgl FLA1_BORBU : 193- 195: niyaa NvA nlfsg FLA1_BORBU : 255- 256: lakie N-A irmis FLGB_BACSU : 13- 14: iqnle N-A lsrad FLGB_BACSU : 28- 30: kvitn NiA nidtp FLGB_SALTY : 28- 30: eilaa NiA nadtp FLGB_SALTY : 31- 32: aania N-A dtpgy FLGC_BACSU : 27- 29: dvvss NlA nmdtt FLGC_BACSU : 73- 74: msgsg N-A gngvk FLGC_BACSU : 102- 103: tdpda N-A egyvq FLGC_BACSU : 136- 137: nvtam N-A tkgml FLGC_SALTY : 22- 24: qskrl NvA asnla FLGC_SALTY : 27- 29: nvaas NlA nadsv FLGC_SALTY : 30- 31: asnla N-A dsvtg FLGE_CAUCR : 4- 6: msi NsA mlagv FLGE_CAUCR : 27- 29: aaisd NiA nvntv FLGE_SALTY : 10- 11: avsgl N-A aatnl FLGE_SALTY : 10- 12: avsgl NaA atnld FLGE_SALTY : 22- 24: dvign NiA nsaty FLGE_SALTY : 25- 27: gnnia NsA tygfk FLGE_SALTY : 132- 134: iqqga NpA pitip FLGE_SALTY : 191- 192: ydsqg N-A hdmnv FLGE_SALTY : 251- 253: ttgti NgA taatf FLGE_SALTY : 318- 320: qivla NfA nnegl FLGE_SALTY : 357- 359: fgklt NgA leasn FLGE_SALTY : 384- 385: rnyqs N-A qtikt FLGF_CAUCR : 3- 4: md N-A lyvgl FLGF_CAUCR : 25- 27: divan NiA nantt FLGF_CAUCR : 28- 29: annia N-A nttgf FLGF_CAUCR : 183- 185: yrntt NtA pqpvt FLGF_CAUCR : 229- 231: akmmd NtA elsrt FLGF_SALTY : 25- 27: avtas NlA nastp FLGF_SALTY : 28- 29: asnla N-A stpgf FLGF_SALTY : 39- 40: fraql N-A lravp FLGF_SALTY : 223- 224: tdmia N-A rrfem FLGG_BACSU : 25- 27: dvign NiA nvntv FLGG_CAUCR : 24- 26: evisn NiA nmntv FLGG_CAUCR : 145- 146: itipq N-A tditi FLGG_SALTY : 25- 27: dvian NlA nvstn FLGG_SALTY : 145- 146: itipa N-A lsiti FLGG_SALTY : 209- 211: stpgl NgA gllyq FLGG_SALTY : 225- 227: etsnv NvA eelvn FLGK_BACSU : 28- 30: sttan NvA nantd FLGK_BACSU : 31- 32: annva N-A ntdgy FLGK_BACSU : 56- 57: pavsk N-A ektag FLGK_BACSU : 90- 92: yrlqn NsA gyydt FLGK_ECOLI : 2- 3: a N-A ifdal FLGK_SALTY : 5- 7: ssli NhA msgln FLGK_SALTY : 12- 13: amsgl N-A aqaal FLGK_SALTY : 12- 14: amsgl NaA qaaln FLGK_SALTY : 29- 31: ninny NvA gytrq FLGK_SALTY : 122- 123: qtlvs N-A edpaa FLGK_SALTY : 158- 160: qdkqv NiA igssv FLGK_SALTY : 170- 172: vaqin NyA kqian FLGK_SALTY : 309- 310: fadaf N-A qhtkg FLGK_SALTY : 339- 341: vysns NnA dktvs FLGK_SALTY : 340- 341: ysnsn N-A dktvs FLGK_SALTY : 418- 419: lkpvs N-A ivdmn FLGK_SALTY : 429- 431: nvkvt NeA eiama FLGK_SALTY : 474- 476: gnktf NdA yatlv FLGK_SALTY : 534- 535: qyyla N-A qvlqt FLGK_SALTY : 542- 543: vlqta N-A lfdal FLHO_BACSU : 25- 27: emlsn NiA nants FLHO_BACSU : 28- 29: snnia N-A ntsgy FLHP_BACSU : 130- 131: tpsaa N-A nqlq F 6: 7.3401 50( 17) D-x(1,3)-N Occurences: 50(17) FLA1_BORBU : 119- 122: ieqlt Dei-N riadq FLA1_BORBU : 245- 247: vtttv Da--N tslak FLA1_BORBU : 262- 266: irmis DqraN lgafq FLGB_BACSU : 33- 36: niani Dtp-N ykakk FLGB_BACSU : 69- 73: hvdfs DtdsN ysiva FLGB_BACSU : 71- 73: dfsdt Ds--N ysiva FLGB_SALTY : 95- 97: dqpsl Dg--N tvdmd FLGC_BACSU : 87- 91: kited DsdfN lvydp FLGC_BACSU : 89- 91: tedds Df--N lvydp FLGC_BACSU : 98- 102: vydpt DpdaN aegyv FLGC_BACSU : 100- 102: dptdp Da--N aegyv FLGC_SALTY : 86- 88: gnpla Da--N gyvkm FLGE_CAUCR : 26- 30: laais DniaN vntvg FLGE_SALTY : 17- 21: aatnl DvigN nians FLGE_SALTY : 86- 88: ffrlv Ds--N gsvfy FLGE_SALTY : 102- 104: gqfkl De--N rnlvn FLGE_SALTY : 102- 106: gqfkl DenrN lvnmq FLGE_SALTY : 175- 178: svsda Dsy-N kkgtv FLGE_SALTY : 187- 191: tvtvy DsqgN ahdmn FLGE_SALTY : 194- 196: qgnah Dm--N vyfvk FLGE_SALTY : 392- 396: tiktq DqilN tlvnl FLGF_CAUCR : 20- 24: vrrel DivaN niana FLGF_CAUCR : 83- 87: tggdy DlaiN gmgff FLGF_CAUCR : 173- 176: stfak Dgd-N lyrnt FLGF_SALTY : 150- 153: alnpg Dpp-N tvapv FLGF_SALTY : 219- 223: veamt DmiaN arrfe FLGF_SALTY : 238- 240: vitsv De--N egran FLGG_BACSU : 20- 24: fqtkl DvigN nianv FLGG_CAUCR : 58- 60: sqsss Dg--N ivptg FLGG_SALTY : 20- 24: qqtnm DviaN nlanv FLGG_SALTY : 123- 125: gsfqv Dq--N gqlvt FLGK_BACSU : 114- 118: lnetd DsglN svlns FLGK_ECOLI : 6- 10: anaif DaliN ir FLGK_SALTY : 154- 158: ylrdq DkqvN iaigs FLGK_SALTY : 291- 295: rsqdl DqtrN tlgql FLGK_SALTY : 306- 309: alafa Daf-N aqhtk FLGK_SALTY : 317- 321: htkgy DadgN kgkdf FLGK_SALTY : 319- 321: kgyda Dg--N kgkdf FLGK_SALTY : 422- 424: snaiv Dm--N vkvtn FLGK_SALTY : 449- 452: dvdtg Dsd-N rngqa FLGK_SALTY : 451- 454: dtgds Dnr-N gqall FLGK_SALTY : 460- 463: gqall Dlq-N snvvg FLGK_SALTY : 483- 486: atlvs Dvg-N ktstl FLGK_SALTY : 546- 550: analf DallN ir FLHO_BACSU : 158- 161: qpitv Dne-N ftvse FLHO_BACSU : 187- 190: vrmae Dvr-N lkrdg FLHO_BACSU : 194- 196: rnlkr Dg--N dlyst FLHO_BACSU : 203- 205: lysta Dg--N dlpsa FLHO_BACSU : 262- 266: ydksm DkaaN eigki FLHP_BACSU : 38- 40: gykak Dt--N fselv FLHP_BACSU : 53- 56: qfdqv Dek-N eevak G 7: 7.3401 35( 17) I-x(1,3)-D Occurences: 35(17) FLA1_BORBU : 124- 126: deinr Ia--D qaqyn FLA1_BORBU : 260- 262: nairm Is--D qranl FLA1_BORBU : 277- 279: nrles Ik--D steya FLA1_BORBU : 295- 297: asyaq Ik--D atmtd FLGB_BACSU : 29- 33: vitnn IaniD tpnyk FLGB_BACSU : 58- 61: srlea Ikt-D yrhvd FLGB_SALTY : 29- 33: ilaan IanaD tpgyq FLGC_BACSU : 83- 86: vkvsk Ite-D dsdfn FLGC_BACSU : 83- 87: vkvsk ItedD sdfnl FLGC_SALTY : 6- 8: malln If--D iagsa FLGE_CAUCR : 24- 26: salaa Is--D nianv FLGE_SALTY : 56- 59: vkvag Itq-D ftdgt FLGE_SALTY : 293- 296: lvsyq Inn-D gtvvg FLGE_SALTY : 388- 392: snaqt IktqD qilnt FLGF_CAUCR : 132- 135: dgggq Iti-D prlgp FLGF_SALTY : 137- 140: gseit Iaa-D gtisa FLGF_SALTY : 234- 238: mqmkv ItsvD enegr FLGG_BACSU : 96- 99: tldla Idg-D gyfri FLGG_BACSU : 104- 108: dgyfr IdtgD gtayt FLGG_BACSU : 144- 147: ggtik Ipt-D aqtfs FLGG_BACSU : 153- 156: aqtfs Igs-D gkvsi FLGG_BACSU : 161- 163: dgkvs Iv--D aegkt FLGG_BACSU : 249- 253: snski IttsD eilqe FLGG_CAUCR : 128- 132: ndqgq IvteD gylvq FLGG_CAUCR : 187- 189: gglea Ig--D nlfle FLGG_CAUCR : 247- 251: mnskv IstaD qmlqa FLGG_SALTY : 151- 154: alsit Igr-D gvvsv FLGK_BACSU : 76- 78: ksver Ir--D ifldy FLGK_BACSU : 79- 82: erird Ifl-D yqyrl FLGK_ECOLI : 4- 6: ana If--D alini FLGK_SALTY : 364- 367: atdyk Ivf-D gtdwq FLGK_SALTY : 420- 422: pvsna Iv--D mnvkv FLHO_BACSU : 147- 151: ingrp IlstD rqpit FLHO_BACSU : 155- 158: tdrqp Itv-D nenft FLHO_BACSU : 254- 258: anqkv IqayD ksmdk FLHP_BACSU : 88- 92: sdqgs IqktD rdldi H 8: 7.3401 33( 17) I-x(0,2)-D Occurences: 33(17) FLA1_BORBU : 124- 126: deinr Ia-D qaqyn FLA1_BORBU : 260- 262: nairm Is-D qranl FLA1_BORBU : 277- 279: nrles Ik-D steya FLA1_BORBU : 295- 297: asyaq Ik-D atmtd FLGB_BACSU : 32- 33: nnian I--D tpnyk FLGB_BACSU : 58- 61: srlea IktD yrhvd FLGB_SALTY : 42- 43: yqard I--D fasel FLGC_BACSU : 83- 86: vkvsk IteD dsdfn FLGC_SALTY : 6- 8: malln If-D iagsa FLGE_CAUCR : 24- 26: salaa Is-D nianv FLGE_SALTY : 56- 59: vkvag ItqD ftdgt FLGE_SALTY : 293- 296: lvsyq InnD gtvvg FLGF_CAUCR : 132- 135: dgggq ItiD prlgp FLGF_CAUCR : 134- 135: ggqit I--D prlgp FLGF_SALTY : 137- 140: gseit IaaD gtisa FLGG_BACSU : 76- 77: sssgt I--D tihst FLGG_BACSU : 96- 97: tldla I--D gdgyf FLGG_BACSU : 96- 99: tldla IdgD gyfri FLGG_BACSU : 104- 105: dgyfr I--D tgdgt FLGG_BACSU : 144- 147: ggtik IptD aqtfs FLGG_BACSU : 153- 156: aqtfs IgsD gkvsi FLGG_BACSU : 161- 163: dgkvs Iv-D aegkt FLGG_CAUCR : 187- 189: gglea Ig-D nlfle FLGG_SALTY : 151- 154: alsit IgrD gvvsv FLGK_BACSU : 76- 78: ksver Ir-D ifldy FLGK_BACSU : 79- 82: erird IflD yqyrl FLGK_ECOLI : 4- 6: ana If-D alini FLGK_SALTY : 94- 95: eqmsk I--D nllad FLGK_SALTY : 364- 367: atdyk IvfD gtdwq FLGK_SALTY : 394- 395: dgkle I--D glkvt FLGK_SALTY : 420- 422: pvsna Iv-D mnvkv FLHO_BACSU : 155- 158: tdrqp ItvD nenft FLHO_BACSU : 180- 181: rtagq I--D vrmae FLHP_BACSU : 19- 20: qlqqq I--D tissn I 9: 7.3401 58( 17) A-x(1,3)-D Occurences: 58(17) FLA1_BORBU : 39- 41: yrinr As--D daagm FLA1_BORBU : 39- 42: yrinr Asd-D aagmg FLA1_BORBU : 179- 182: rvhvg Anq-D eaiav FLA1_BORBU : 293- 297: lkasy AqikD atmtd FLA1_BORBU : 298- 302: aqikd AtmtD evvaa FLGB_BACSU : 30- 33: itnni Ani-D tpnyk FLGB_BACSU : 57- 61: ssrle AiktD yrhvd FLGB_BACSU : 78- 81: nysiv Asg-D tsyqq FLGB_SALTY : 30- 33: laani Ana-D tpgyq FLGB_SALTY : 39- 41: tpgyq Ar--D idfas FLGB_SALTY : 39- 43: tpgyq ArdiD fasel FLGB_SALTY : 81- 83: avssp Av--D llyrv FLGC_BACSU : 29- 32: vssnl Anm-D ttrak FLGC_SALTY : 29- 32: aasnl Ana-D svtgp FLGE_CAUCR : 22- 26: nssal AaisD nianv FLGE_CAUCR : 23- 26: ssala Ais-D nianv FLGE_SALTY : 13- 17: glnaa AtnlD vignn FLGE_SALTY : 36- 40: fksgt AsfaD mfags FLGE_SALTY : 192- 194: dsqgn Ah--D mnvyf FLGE_SALTY : 326- 330: nnegl AsqgD nvwaa FLGE_SALTY : 362- 366: ngale AsnvD lskel FLGF_CAUCR : 49- 53: eqakp AktlD gsspv FLGF_CAUCR : 122- 126: vtqag ApvlD dgggq FLGF_CAUCR : 171- 173: dlstf Ak--D gdnly FLGF_CAUCR : 171- 175: dlstf AkdgD nlyrn FLGF_CAUCR : 224- 228: ayesv AkmmD ntael FLGF_SALTY : 43- 47: lnalr AvpvD glsla FLGF_SALTY : 81- 85: rpldv AlqqD gwlvv FLGF_SALTY : 92- 94: wlvvq Aa--D gaegy FLGF_SALTY : 138- 140: seiti Aa--D gtisa FLGF_SALTY : 194- 196: rgavl Aa--D psiri FLGF_SALTY : 216- 219: vkpve Amt-D miana FLGG_BACSU : 95- 97: rtldl Ai--D gdgyf FLGG_BACSU : 95- 99: rtldl AidgD gyfri FLGG_BACSU : 180- 183: givtf Ans-D gldki FLGG_CAUCR : 38- 42: fkrqr AefqD llyqt FLGG_CAUCR : 146- 148: tipqn At--D itisk FLGG_CAUCR : 186- 189: eggle Aig-D nlfle FLGG_CAUCR : 221- 225: stdte AsnvD avsei FLGG_SALTY : 39- 43: fkrqr AvfeD llyqt FLGG_SALTY : 113- 117: pdgts AytrD gsfqv FLGK_BACSU : 32- 35: nnvan Ant-D gytrq FLGK_BACSU : 46- 48: rvsle At--D yfpav FLGK_BACSU : 92- 96: lqnns AgyyD tkaka FLGK_ECOLI : 3- 6: an Aif-D alini FLGK_SALTY : 123- 125: tlvsn Ae--D paarq FLGK_SALTY : 176- 180: yakqi AnlnD qisrm FLGK_SALTY : 192- 196: gvgag AspnD lldqr FLGK_SALTY : 258- 261: trttv Ayv-D eaagn FLGK_SALTY : 303- 306: gqlal Afa-D afnaq FLGK_SALTY : 349- 353: tvslt AkvvD stkvq FLGK_SALTY : 359- 361: stkvq At--D ykivf FLGK_SALTY : 384- 387: nttft Atk-D adgkl FLGK_SALTY : 405- 409: tvgtg AqknD sfllk FLGK_SALTY : 419- 422: kpvsn Aiv-D mnvkv FLGK_SALTY : 457- 460: nrngq All-D lqnsn FLGK_SALTY : 543- 546: lqtan Alf-D allni FLHO_BACSU : 177- 181: tngrt AgqiD vrmae FLHO_BACSU : 185- 187: idvrm Ae--D vrnlk FLHO_BACSU : 202- 206: dlyst AdgnD lpsar FLHO_BACSU : 256- 258: qkviq Ay--D ksmdk FLHP_BACSU : 36- 38: ttgyk Ak--D tnfse Number of patterns evaluated by Pratt:16 Total running time: 0 seconds