------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 24 sequences from file FIMBRIAL_USHER PATTERN CONSERVATION: CM: min Nr of Seqs to Match 24 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 41 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FIMBRIAL_USHER.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGGC_ECOLI 842 CAFA_YERPE 833 CS32_ECOLI 937 FAED_ECOLI 812 FAND_ECOLI 783 FASD_ECOLI 835 FIMC_BORPE 873 FIMD_ECOLI 878 FIMD_SALTY 870 FOCD_ECOLI 875 HFC1_HAEIN 837 HFC2_HAEIN 837 HFC3_HAEIN 837 HTRE_ECOLI 865 LPFC_SALTY 842 MRKC_KLEPN 828 MYFC_YEREN 841 PAPC_ECOLI 836 PEFC_SALTY 802 SEFC_SALEN 814 YEHB_ECOLI 826 YHCD_ECOLI 793 YPSE_YERPE 182 YRAJ_ECOLI 838 Pratt run started at Thu Feb 6 19:29:23 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 40( 24) L-x(4)-L-x(2,3)-G 2: 12.0102 48( 24) L-x(3,4)-L-x(3)-G 3: 12.0102 82( 24) S-x(1,2)-S-x-S 4: 12.0102 66( 24) S-x-S-x(3,4)-G 5: 11.5102 80( 24) G-x(0,1)-V-x(2,3)-S 6: 11.5102 72( 24) G-x(1,2)-N-x(1,2)-S 7: 11.5102 73( 24) G-x(1,2)-N-x(0,1)-S 8: 11.5102 60( 24) V-x(2,3)-G-x(4,5)-S 9: 11.5102 55( 24) Y-x(2,3)-S-x(3,4)-S 10: 11.5102 50( 24) L-x(5)-S-x(3,5)-S 11: 11.5102 51( 24) G-x(1,2)-A-x(3,4)-Y 12: 11.5102 65( 24) A-x-L-x(1,3)-G 13: 11.5102 62( 24) S-x(4,5)-A-x(3,4)-G 14: 11.5102 53( 24) S-x(3,4)-A-x(4,5)-G 15: 11.5102 53( 24) S-x(3,4)-A-x(3,4)-G 16: 11.5102 51( 24) S-x(5)-L-x(1,3)-G 17: 11.5102 60( 24) L-x(0,1)-N-x(0,1)-S 18: 11.5102 49( 24) L-x(1,2)-S-x(2,3)-N 19: 11.5102 48( 24) L-x(1,2)-S-x(1,2)-N 20: 11.5102 69( 24) G-x(0,1)-V-x(0,1)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 12.7486 57( 24) A-x-L-x(1,3)-G-x(4)-[ADEGNQST] B 2: 12.0102 40( 24) L-x(4)-L-x(2,3)-G C 3: 12.0102 48( 24) L-x(3,4)-L-x(3)-G D 4: 12.0102 82( 24) S-x(1,2)-S-x-S E 5: 12.0102 66( 24) S-x-S-x(3,4)-G F 6: 11.5102 80( 24) G-x(0,1)-V-x(2,3)-S G 7: 11.5102 72( 24) G-x(1,2)-N-x(1,2)-S H 8: 11.5102 73( 24) G-x(1,2)-N-x(0,1)-S I 9: 11.5102 60( 24) V-x(2,3)-G-x(4,5)-S J 10: 11.5102 55( 24) Y-x(2,3)-S-x(3,4)-S K 11: 11.5102 50( 24) L-x(5)-S-x(3,5)-S L 12: 11.5102 51( 24) G-x(1,2)-A-x(3,4)-Y M 13: 11.5102 62( 24) S-x(4,5)-A-x(3,4)-G N 14: 11.5102 53( 24) S-x(3,4)-A-x(4,5)-G O 15: 11.5102 53( 24) S-x(3,4)-A-x(3,4)-G P 16: 11.5102 51( 24) S-x(5)-L-x(1,3)-G Q 17: 11.5102 60( 24) L-x(0,1)-N-x(0,1)-S R 18: 11.5102 49( 24) L-x(1,2)-S-x(2,3)-N S 19: 11.5102 48( 24) L-x(1,2)-S-x(1,2)-N T 20: 11.5102 69( 24) G-x(0,1)-V-x(0,1)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 12.7486 57( 24) A-x-L-x(1,3)-G-x(4)-[ADEGNQST] Occurences: 57(24) AGGC_ECOLI : 28- 39: tfsfd AsLlnhGsggiD ltlle AGGC_ECOLI : 194- 204: sdnfw AsLep-GinlgS wrirn CAFA_YERPE : 187- 197: ldsyy AqLqp-GlnigA wrfrs CAFA_YERPE : 302- 312: gpfel AnLpl-GggsgE lkvii CAFA_YERPE : 398- 409: algig AmLgdfGaistD vtqad CS32_ECOLI : 439- 448: ifngk AyLs--GslirS elmnf FAED_ECOLI : 56- 65: npevw AaLn--GsyapG rylvd FAED_ECOLI : 98- 109: lclte AwLtkaGvyvsA dyfre FAED_ECOLI : 231- 241: irals AdLav-GktstG dsllg FAED_ECOLI : 396- 407: sagvv AgLgylGavsaD gayat FAED_ECOLI : 621- 630: ysgdr AyLn--GvlnhS qsggt FAND_ECOLI : 325- 336: pvtfi AnLlspGnynyD fgign FASD_ECOLI : 594- 603: qvrnt AtLa--GkvpgS maqyr FIMC_BORPE : 35- 44: vnfds AmLw--GgangA dlsrf FIMC_BORPE : 35- 45: vnfds AmLwg-GangaD lsrfn FIMC_BORPE : 243- 253: ipswr ArLvf-GdvfsS geyfa FIMC_BORPE : 407- 416: aqayq AgLa--GlswnT pwgam FIMD_ECOLI : 112- 123: pcltr AqLasmGlntaS vagmn FIMD_ECOLI : 147- 157: vqdat AhLdv-GqqrlN ltipq FIMD_ECOLI : 669- 680: gstgy AtLnyrGgygnA nigys FIMD_SALTY : 391- 401: qgtvi AgLpa-GltayG gtqla FIMD_SALTY : 395- 406: iaglp AgLtayGgtqlA dryra FOCD_ECOLI : 633- 642: qaast AgLy--GtllgD nnlgy FOCD_ECOLI : 667- 678: sktgy AsLnyrGgygnA sagys HFC1_HAEIN : 32- 42: edqfd AsLwg-GgsvlG idfar HFC1_HAEIN : 53- 62: fnvkn AvLp--GryeaQ iyvnn HFC1_HAEIN : 239- 248: lqrdf AlLr--GnvtvG dffst HFC1_HAEIN : 350- 361: pfsnl ApLmrvGhlryQ laggr HFC1_HAEIN : 405- 414: trhyr AgLf--GfglnT pigaf HFC2_HAEIN : 32- 42: edqfd AsLwg-GgsvlG idfar HFC2_HAEIN : 53- 62: fnvkn AvLp--GryeaQ iyvnn HFC2_HAEIN : 239- 248: lqrdf AlLr--GnvtvG dffst HFC2_HAEIN : 350- 361: pfsnl ApLmrvGhlryQ laggr HFC2_HAEIN : 405- 414: trhyr AgLf--GfglnT pigaf HFC3_HAEIN : 53- 62: fnvkn AvLp--GryeaQ iyvkf HFC3_HAEIN : 239- 248: lqrdf AlLr--GnvtvG dffst HFC3_HAEIN : 350- 361: pfsnl ApLmrvGhlryQ laggr HFC3_HAEIN : 405- 414: trhyr AgLf--GfglnT pigaf HTRE_ECOLI : 408- 417: dnnyt AgLl--GlglnT svgaf LPFC_SALTY : 360- 371: pfssv AlLqreGhlkyS lsage MRKC_KLEPN : 171- 181: wdkgv AaLnl-GwmanA wnshi MRKC_KLEPN : 352- 363: pyasv AqLlrpGmtryA lsagk MRKC_KLEPN : 407- 416: fddyq AfLl--GtgmnT gigal MYFC_YEREN : 794- 803: deggk AyLt--GlpetG qllvq PAPC_ECOLI : 249- 259: iprwr AnLtl-GenniN sdifr PAPC_ECOLI : 611- 621: sysln AgLns-GggltS qrqin PAPC_ECOLI : 611- 622: sysln AgLnsgGgltsQ rqina PAPC_ECOLI : 643- 653: lsani AsLqk-GytsfG vsasg PAPC_ECOLI : 667- 677: itgkg AaLha-GgmsgG trllv PAPC_ECOLI : 667- 678: itgkg AaLhagGmsggT rllvd PAPC_ECOLI : 793- 802: adegl AwLs--GvtpgE tlsvn PEFC_SALTY : 262- 272: eargy ApLit-GvansT srvti SEFC_SALEN : 298- 308: greqi AdLgv-GvgvlD vsiye YEHB_ECOLI : 13- 22: asaiv AlLl--GieayA aeetf YEHB_ECOLI : 219- 228: lergf AqLl--GtlrvG dmyts YEHB_ECOLI : 722- 731: qsdse AeLr--GnrkiA apyrg YHCD_ECOLI : 89- 100: icldq AfLqqaGlkipS eekng YHCD_ECOLI : 176- 185: sdysq AaLe--GginiN dwmlr YHCD_ECOLI : 176- 186: sdysq AaLeg-GininD wmlrs YPSE_YERPE : 132- 143: lsipq AaLrpeGevpiE rwddg YRAJ_ECOLI : 70- 79: fskky AqLp--GtyqvD iwlnk B 2: 12.0102 40( 24) L-x(4)-L-x(2,3)-G Occurences: 40(24) AGGC_ECOLI : 87- 96: ylkpc LtrdiLinyG vktee AGGC_ECOLI : 324- 333: gnggd LqvwvLesdG tiqtf CAFA_YERPE : 12- 21: flcag LtlatLpcwG raytf CAFA_YERPE : 43- 52: sidvs LfnqgLqlpG nyfvn CAFA_YERPE : 87- 96: llwpc LsslqLtkyG ididk CAFA_YERPE : 301- 309: sgpfe LanlpLgg-G sgelk CS32_ECOLI : 68- 77: rkkng LapikLwdeG enalf CS32_ECOLI : 321- 329: kmlgn LgalsLiy-G qsnfs FAED_ECOLI : 95- 104: snelc LteawLtkaG vyvsa FAED_ECOLI : 372- 380: sygyg LdgltLra-G gvfnq FAED_ECOLI : 372- 381: sygyg LdgltLragG vfnqd FAND_ECOLI : 86- 95: kesyc LkdewLsdlG iiinr FASD_ECOLI : 238- 247: ylrst LrlgeLstrG miles FASD_ECOLI : 658- 666: sgsai LypwrLai-G sdsvi FIMC_BORPE : 427- 436: aadat LsrsqLsttG nangs FIMD_ECOLI : 109- 118: givpc LtraqLasmG lntas FIMD_ECOLI : 462- 471: qsvrf LynksLnesG tniql FIMD_SALTY : 451- 460: qslrf LyaksLnnyG tnfql FIMD_SALTY : 792- 800: iitar LggrpLpf-G aivre FOCD_ECOLI : 461- 470: qsyrf LynksLtetG tniql HFC1_HAEIN : 755- 763: kntmv LfnltLpn-G epvpm HFC2_HAEIN : 197- 206: rggvn LgnwaLrhnG sfsrf HFC2_HAEIN : 755- 763: kntmv LfnltLpn-G epvpm HFC3_HAEIN : 18- 27: facsl LlanpLawaG dqfda HFC3_HAEIN : 755- 763: kntmv LfnltLpn-G epvpm HTRE_ECOLI : 208- 217: nggmn LgawrLrasG nynwm LPFC_SALTY : 104- 113: slvpc LsrvqLedmG vrids MRKC_KLEPN : 430- 439: vthtr LksdtLdehG qsyra MYFC_YEREN : 96- 105: slqsc LtkeqLsryG vdvdn MYFC_YEREN : 332- 341: hsngd LhvtvLesnG ttqqf PAPC_ECOLI : 604- 612: tfndg LdsysLna-G lnsgg PEFC_SALTY : 86- 95: analc LspewLkaaG vpvrl PEFC_SALTY : 482- 491: rfsqr LgnsnLnlaG wqedy SEFC_SALEN : 81- 90: tlepc LtkekLikyG iaiqe SEFC_SALEN : 475- 484: sttsm LlsqaLgslG svnls YEHB_ECOLI : 105- 113: sgkqc LtfeqLvq-G gsytw YEHB_ECOLI : 105- 114: sgkqc LtfeqLvqgG sytwd YHCD_ECOLI : 86- 95: ngdic LdqafLqqaG lkips YHCD_ECOLI : 278- 287: rqqgv LihsiLvpaG aftip YHCD_ECOLI : 715- 723: tqrra LlnitLsd-G kklpr YPSE_YERPE : 75- 84: flqsc LtkeqLsryG vdvda YRAJ_ECOLI : 599- 607: qhemr LdgslLdd-G rlsys C 3: 12.0102 48( 24) L-x(3,4)-L-x(3)-G Occurences: 48(24) AGGC_ECOLI : 87- 96: ylkpc LtrdiLinyG vktee AGGC_ECOLI : 324- 333: gnggd LqvwvLesdG tiqtf AGGC_ECOLI : 384- 392: tamyg Lpws-LtafG giqvs AGGC_ECOLI : 405- 413: yqgna Lglg-LslgG fgsis AGGC_ECOLI : 407- 415: gnalg Lgls-LggfG sisld CAFA_YERPE : 12- 21: flcag LtlatLpcwG raytf CAFA_YERPE : 43- 52: sidvs LfnqgLqlpG nyfvn CAFA_YERPE : 87- 96: llwpc LsslqLtkyG ididk CS32_ECOLI : 68- 77: rkkng LapikLwdeG enalf CS32_ECOLI : 314- 322: sleig Lgkm-LgnlG alsli FAED_ECOLI : 95- 104: snelc LteawLtkaG vyvsa FAED_ECOLI : 372- 381: sygyg LdgltLragG vfnqd FAND_ECOLI : 86- 95: kesyc LkdewLsdlG iiinr FAND_ECOLI : 280- 288: qngvv Lhse-LvspG pfhin FASD_ECOLI : 238- 247: ylrst LrlgeLstrG miles FASD_ECOLI : 493- 501: ritls Lnqs-LddyG slsli FIMC_BORPE : 116- 124: aldpa Lvad-LkssG rcevl FIMC_BORPE : 427- 436: aadat LsrsqLsttG nangs FIMC_BORPE : 510- 518: dfsvt Lsqp-LggyG slyvs FIMD_ECOLI : 109- 118: givpc LtraqLasmG lntas FIMD_ECOLI : 462- 471: qsvrf LynksLnesG tniql FIMD_SALTY : 393- 401: tviag Lpag-LtayG gtqla FIMD_SALTY : 451- 460: qslrf LyaksLnnyG tnfql FOCD_ECOLI : 461- 470: qsyrf LynksLtetG tniql HFC1_HAEIN : 504- 512: qfqvs Lsqs-LgnwG nlyls HFC2_HAEIN : 197- 206: rggvn LgnwaLrhnG sfsrf HFC2_HAEIN : 504- 512: qfqvs Lsqs-LgnwG nlyls HFC3_HAEIN : 18- 27: facsl LlanpLawaG dqfda HFC3_HAEIN : 19- 27: acsll Lanp-LawaG dqfda HFC3_HAEIN : 504- 512: qfqvs Lsqs-LgnwG nlyls HTRE_ECOLI : 208- 217: nggmn LgawrLrasG nynwm LPFC_SALTY : 104- 113: slvpc LsrvqLedmG vrids MRKC_KLEPN : 430- 439: vthtr LksdtLdehG qsyra MYFC_YEREN : 96- 105: slqsc LtkeqLsryG vdvdn MYFC_YEREN : 332- 341: hsngd LhvtvLesnG ttqqf PAPC_ECOLI : 609- 617: ldsys Lnag-LnsgG gltsq PEFC_SALTY : 86- 95: analc LspewLkaaG vpvrl PEFC_SALTY : 482- 491: rfsqr LgnsnLnlaG wqedy PEFC_SALTY : 586- 594: rlsyg Lntn-LsdkG drsls SEFC_SALEN : 81- 90: tlepc LtkekLikyG iaiqe SEFC_SALEN : 475- 484: sttsm LlsqaLgslG svnls SEFC_SALEN : 476- 484: ttsml Lsqa-LgslG svnls YEHB_ECOLI : 105- 114: sgkqc LtfeqLvqgG sytwd YHCD_ECOLI : 86- 95: ngdic LdqafLqqaG lkips YHCD_ECOLI : 278- 287: rqqgv LihsiLvpaG aftip YPSE_YERPE : 75- 84: flqsc LtkeqLsryG vdvda YRAJ_ECOLI : 24- 32: iikrc Lpmv-LtgsG mlctt YRAJ_ECOLI : 599- 607: qhemr Ldgs-LlddG rlsys D 4: 12.0102 82( 24) S-x(1,2)-S-x-S Occurences: 82(24) AGGC_ECOLI : 526- 530: dyiga Sy-SnS wkgit CAFA_YERPE : 513- 518: wrdsr SttSfS vgynh CS32_ECOLI : 230- 234: sdyil Sg-SnS dlyvk CS32_ECOLI : 331- 336: liygq SnfSkS dnskn CS32_ECOLI : 746- 751: ygkki SflSaS vwxvi FAED_ECOLI : 489- 493: vgglf Sl-SvS gwqrs FAED_ECOLI : 550- 554: gennw Sa-SaS vsvpf FAED_ECOLI : 552- 556: nnwsa Sa-SvS vpftl FAED_ECOLI : 567- 571: fdrry Ss-SaS vstsk FAED_ECOLI : 568- 573: drrys SsaSvS tskgg FAED_ECOLI : 569- 573: rryss Sa-SvS tskgg FAED_ECOLI : 571- 575: ysssa Sv-StS kgggt FAED_ECOLI : 636- 640: qsggt Sg-SvS vsgsv FAED_ECOLI : 638- 642: ggtsg Sv-SvS gsvla FAED_ECOLI : 640- 644: tsgsv Sv-SgS vlavp FAND_ECOLI : 19- 24: lclis SksSaS ekeln FAND_ECOLI : 582- 586: skdne Sv-SlS tnyts FAND_ECOLI : 597- 601: smfrt Sa-SvS knrns FAND_ECOLI : 629- 634: gvmlt SmsSnS vaivq FASD_ECOLI : 519- 523: tsdyv Sr-SfS lshsf FASD_ECOLI : 521- 525: dyvsr Sf-SlS hsfgw FASD_ECOLI : 523- 527: vsrsf Sl-ShS fgwnd FASD_ECOLI : 536- 540: ndiff St-SfS ldqke FASD_ECOLI : 651- 655: ritdy Sl-SgS ailyp FIMC_BORPE : 859- 864: avaqp SaiSiS gkdhe FIMD_ECOLI : 608- 612: shwlr Sd-SkS qwrha FIMD_ECOLI : 618- 622: qwrha Sa-SyS mshdl FIMD_ECOLI : 620- 624: rhasa Sy-SmS hdlng FIMD_ECOLI : 817- 822: gamvt SesSqS sgiva FIMD_SALTY : 564- 568: gwqgi Sy-SlS wswse FIMD_SALTY : 566- 570: qgisy Sl-SwS wsesv FIMD_SALTY : 568- 572: isysl Sw-SwS esvgs FIMD_SALTY : 570- 574: yslsw Sw-SeS vgssg FIMD_SALTY : 654- 658: ssngy Sg-SaS aswqa FIMD_SALTY : 656- 660: ngysg Sa-SaS wqaty FOCD_ECOLI : 228- 232: lrdnt Sw-SyS agkgy FOCD_ECOLI : 606- 610: shwmr Sd-StS awrna HFC1_HAEIN : 503- 507: nqfqv Sl-SqS lgnwg HFC1_HAEIN : 581- 586: nhsad SsySrS gndin HFC1_HAEIN : 582- 586: hsads Sy-SrS gndin HFC2_HAEIN : 503- 507: nqfqv Sl-SqS lgnwg HFC2_HAEIN : 581- 586: nhsad SsySrS gndin HFC2_HAEIN : 582- 586: hsads Sy-SrS gndin HFC3_HAEIN : 205- 209: walrh Sg-SfS rfenq HFC3_HAEIN : 503- 507: nqfqv Sl-SqS lgnwg HFC3_HAEIN : 581- 586: nhsad SsySrS gndin HFC3_HAEIN : 582- 586: hsads Sy-SrS gndin HTRE_ECOLI : 527- 531: gsfyl Sg-SwS dywas HTRE_ECOLI : 548- 552: ysigy Sn-StS wgsys HTRE_ECOLI : 552- 557: ysnst SwgSyS vsaqr HTRE_ECOLI : 555- 559: stswg Sy-SvS aqrsw HTRE_ECOLI : 690- 695: ggltf SndSfS dsdtl HTRE_ECOLI : 693- 697: tfsnd Sf-SdS dtlav LPFC_SALTY : 201- 206: hdset SynSdS yylnl LPFC_SALTY : 571- 575: sdrll Sf-SmS iplgr LPFC_SALTY : 720- 725: retev SlrSdS lnnqv MRKC_KLEPN : 53- 58: ekvdp SrfStS aiseg MYFC_YEREN : 458- 463: ktlqa SdtSfS vvnsq MYFC_YEREN : 566- 570: qdrll Sl-SvS mplgr MYFC_YEREN : 687- 692: evpgv SgvStS edhrl PAPC_ECOLI : 552- 556: vavgl Sa-SrS kylgr PAPC_ECOLI : 580- 584: gtgta Sy-SgS msndr PAPC_ECOLI : 582- 586: gtasy Sg-SmS ndryv PEFC_SALTY : 127- 132: trvdf SygSqS lvfsi PEFC_SALTY : 170- 175: nasqt SgqStS ayana PEFC_SALTY : 193- 198: rwvla SnmSaS ryadg PEFC_SALTY : 434- 438: akyak Sf-SdS sdlql PEFC_SALTY : 538- 542: dkpdy St-SlS fsipf PEFC_SALTY : 540- 544: pdyst Sl-SfS ipftl PEFC_SALTY : 572- 577: rmgmn SgvSaS ptdrl PEFC_SALTY : 625- 629: dnttv Sg-SvS gtilg SEFC_SALEN : 516- 520: nlngv Sl-SlS ytkst YEHB_ECOLI : 193- 198: gwqlh SdaSfS ktnnn YEHB_ECOLI : 501- 505: pegwg Sv-SlS tlwrd YEHB_ECOLI : 636- 640: atvng Sy-SqS styrq YEHB_ECOLI : 716- 720: lmldv Sq-SdS eaelr YHCD_ECOLI : 395- 400: dltvs SqiStS qdtkd YHCD_ECOLI : 599- 603: laaga Sg-SdS rtyng YPSE_YERPE : 61- 66: nvtfh SekSpS gepfl YRAJ_ECOLI : 258- 263: lllge SatSgS ifssy YRAJ_ECOLI : 797- 802: ylsgi SskSqS wtvrw YRAJ_ECOLI : 798- 802: lsgis Sk-SqS wtvrw E 5: 12.0102 66( 24) S-x-S-x(3,4)-G Occurences: 66(24) AGGC_ECOLI : 526- 533: dyiga SySnswkG itfav CAFA_YERPE : 489- 496: vqfnl SqSipgsG tlnfs CAFA_YERPE : 772- 779: tiegq SsSsgivG dnsgv CAFA_YERPE : 773- 779: iegqs SsSgiv-G dnsgv CS32_ECOLI : 852- 858: itlms SrSvvd-G rqtgf FAED_ECOLI : 30- 36: savlg SaSvia-G ekldm FAED_ECOLI : 200- 207: ghwvv SsSatasG gdsgd FAED_ECOLI : 523- 530: tgitg SlStqikG vslnl FAED_ECOLI : 538- 545: lnlgw SgSrnsrG ennws FAED_ECOLI : 571- 577: ysssa SvStsk-G ggtgf FAED_ECOLI : 571- 578: ysssa SvStskgG gtgfs FAED_ECOLI : 573- 579: ssasv StSkgg-G tgfst FAED_ECOLI : 630- 637: gvlnh SqSggtsG svsvs FAED_ECOLI : 636- 643: qsggt SgSvsvsG svlav FAND_ECOLI : 512- 518: asvng SySrgd-G aksdy FASD_ECOLI : 313- 319: eindf SlSgys-G dlyvn FASD_ECOLI : 523- 529: vsrsf SlShsf-G wndif FASD_ECOLI : 667- 673: rlaig SdSvin-G aavve FASD_ECOLI : 775- 781: vslvg SdSeit-G iidda FIMC_BORPE : 446- 453: sslrf SySktlsG tntai FIMC_BORPE : 634- 640: yalng SwSgty-G evsgq FIMD_ECOLI : 622- 629: asasy SmShdlnG rmtnl FIMD_ECOLI : 648- 654: ednnl SySvqt-G yaggg FIMD_ECOLI : 817- 824: gamvt SeSsqssG ivadn FIMD_SALTY : 570- 576: yslsw SwSesv-G ssgad FIMD_SALTY : 572- 579: lswsw SeSvgssG adril FIMD_SALTY : 640- 646: egrnl SySvtq-G rsssn FIMD_SALTY : 648- 655: vtqgr SsSngysG sasas FOCD_ECOLI : 228- 234: lrdnt SwSysa-G kgysq FOCD_ECOLI : 230- 236: dntsw SySagk-G ysqnn HFC1_HAEIN : 184- 190: npevk SeSlyv-G lrggv HFC1_HAEIN : 503- 509: nqfqv SlSqsl-G nwgnl HFC1_HAEIN : 505- 512: fqvsl SqSlgnwG nlyls HFC1_HAEIN : 568- 574: nsiyl SlSlpl-G dnhsa HFC1_HAEIN : 648- 655: slknr StSlgvsG avvah HFC2_HAEIN : 184- 190: npevk SkSlyv-G lrggv HFC2_HAEIN : 503- 509: nqfqv SlSqsl-G nwgnl HFC2_HAEIN : 505- 512: fqvsl SqSlgnwG nlyls HFC2_HAEIN : 568- 574: nsiyl SlSlpl-G dnhsa HFC2_HAEIN : 648- 655: slknr StSlgasG avvah HFC3_HAEIN : 184- 190: npevk SeSlyv-G lrsgv HFC3_HAEIN : 503- 509: nqfqv SlSqsl-G nwgnl HFC3_HAEIN : 505- 512: fqvsl SqSlgnwG nlyls HFC3_HAEIN : 568- 574: nsiyl SlSlpl-G dnhsa HFC3_HAEIN : 648- 655: slknr SiSlgasG avvah HTRE_ECOLI : 548- 554: ysigy SnStsw-G sysvs HTRE_ECOLI : 626- 632: dnarv SySvnt-G ytmnk HTRE_ECOLI : 673- 679: nsrqv SlStdg-G fvlhs LPFC_SALTY : 458- 464: yrfly SkSfns-G tdfrl LPFC_SALTY : 573- 579: rllsf SmSipl-G rvwsn MRKC_KLEPN : 56- 63: dpsrf StSaiseG vysld MRKC_KLEPN : 644- 650: ttlng SySqge-G yrqsg MYFC_YEREN : 568- 574: rllsl SvSmpl-G rerdt MYFC_YEREN : 749- 755: aivra SfSpqi-G aralm PAPC_ECOLI : 554- 560: vglsa SrSkyl-G rdnds PAPC_ECOLI : 606- 612: ndgld SySlna-G lnsgg PEFC_SALTY : 47- 54: psvlk SgSdfpaG qyyvd PEFC_SALTY : 196- 203: lasnm SaSryadG sgeft PEFC_SALTY : 627- 634: ttvsg SvSgtilG tadsg SEFC_SALEN : 31- 37: nfdyg SlSlpp-G enasf SEFC_SALEN : 282- 288: gyliy StSvpp-G qfeig YEHB_ECOLI : 406- 413: vdatk ShSkqdnG dvfdg YEHB_ECOLI : 492- 498: fsanm SqSlpe-G wgsvs YHCD_ECOLI : 463- 469: lglnw SnSilg-G fnisg YHCD_ECOLI : 601- 608: agasg SdSrtynG tmsgg YPSE_YERPE : 2- 8: m StSflv-G aqrys YRAJ_ECOLI : 172- 179: argyv SpSrwddG iptlf F 6: 11.5102 80( 24) G-x(0,1)-V-x(2,3)-S Occurences: 80(24) AGGC_ECOLI : 796- 801: vvddk GkVyl-S glsea CAFA_YERPE : 776- 782: qssss GiVgdnS gvylt CS32_ECOLI : 22- 26: vlqdi G-Vtv-S gnqde CS32_ECOLI : 209- 214: effqd G-VkiyS sivpp CS32_ECOLI : 788- 792: idfdv G-Vgr-S faavg FAED_ECOLI : 104- 108: wltka G-Vyv-S adyfr FAED_ECOLI : 252- 256: stgty G-Vsl-S rnnsm FAED_ECOLI : 361- 367: dsdlk GgVfaaS ygygl FAED_ECOLI : 362- 367: sdlkg G-VfaaS ygygl FAED_ECOLI : 585- 589: tgfst G-Vsg-S lndrf FAED_ECOLI : 625- 630: rayln G-VlnhS qsggt FAED_ECOLI : 637- 642: sggts GsVsv-S gsvla FAED_ECOLI : 674- 679: vkdtp G-VkvtS gdgqt FAND_ECOLI : 240- 245: nisfy G-VqlrS nnamt FAND_ECOLI : 277- 282: tvkqn GvVlh-S elvsp FAND_ECOLI : 277- 282: tvkqn G-VvlhS elvsp FAND_ECOLI : 391- 396: sigsl GaVsv-S gnisr FAND_ECOLI : 503- 508: ytqnf GtVna-S vngsy FAND_ECOLI : 623- 629: igvkd GgVmltS mssns FAND_ECOLI : 624- 629: gvkdg G-VmltS mssns FASD_ECOLI : 598- 603: tatla GkVpg-S maqyr FIMC_BORPE : 248- 253: arlvf GdVfs-S geyfa FIMC_BORPE : 584- 589: gatss GvVtg-S lartg FIMC_BORPE : 584- 589: gatss G-VvtgS lartg FIMC_BORPE : 798- 802: salvr G-Vsa-S gtlev FIMD_ECOLI : 830- 835: ivadn GqVyl-S gmpla FIMD_SALTY : 13- 19: agrfp GyVsplS svals FIMD_SALTY : 306- 312: tirqn GyViyqS yvspg FOCD_ECOLI : 827- 832: iagen GqVyl-S gmpls HFC1_HAEIN : 595- 599: inqrl G-Vng-S fgerh HFC2_HAEIN : 595- 599: inqrl G-Vng-S fgerh HFC3_HAEIN : 595- 599: inqrl G-Vng-S fgerh HTRE_ECOLI : 62- 67: npaip G-VydvS vyvnd HTRE_ECOLI : 679- 684: lstdg GfVlh-S ggltf LPFC_SALTY : 113- 118: qledm G-VridS fpalk LPFC_SALTY : 166- 171: kqtar GtVpe-S qwdeg LPFC_SALTY : 274- 279: svqmr G-VqltS deeml LPFC_SALTY : 547- 552: yngri GrVny-S vaytw LPFC_SALTY : 623- 627: gygsn G-Vgn-S gsvnl LPFC_SALTY : 636- 642: nldyq GgVgsaS lgynh LPFC_SALTY : 637- 642: ldyqg G-VgsaS lgynh LPFC_SALTY : 660- 666: elrfg GgViahS egitl LPFC_SALTY : 661- 666: lrfgg G-ViahS egitl MRKC_KLEPN : 339- 345: vkegd GsVevfS vpyas MRKC_KLEPN : 367- 372: yalsa GkVdd-S slrnk MRKC_KLEPN : 367- 373: yalsa GkVddsS lrnkp MRKC_KLEPN : 601- 605: assqi G-Vng-S ldsen MRKC_KLEPN : 655- 659: gyrqs G-Vga-S gtlia MRKC_KLEPN : 668- 672: iahqh G-Vvf-S petgp MRKC_KLEPN : 744- 750: vvpwe GsVvkvS fdttl MRKC_KLEPN : 786- 792: sgkei GvVgqgS mmfis MYFC_YEREN : 536- 540: asssw G-Vqy-S fnign MYFC_YEREN : 685- 690: lvevp G-VsgvS tsedh MYFC_YEREN : 688- 692: vpgvs G-Vst-S edhrl PAPC_ECOLI : 307- 313: vvsqq GrVlydS mvpag PAPC_ECOLI : 653- 657: gytsf G-Vsa-S ggati PAPC_ECOLI : 705- 711: nrwgt GvVtdiS syyrn PEFC_SALTY : 267- 271: aplit G-Van-S tsrvt PEFC_SALTY : 506- 511: gkaig GdVsl-S ttild PEFC_SALTY : 573- 577: mgmns G-Vsa-S ptdrl PEFC_SALTY : 779- 785: vergd GsVchfS vkgiv SEFC_SALEN : 305- 310: lgvgv G-VldvS iyekn SEFC_SALEN : 484- 489: algsl GsVnl-S ynydk SEFC_SALEN : 514- 518: gknln G-Vsl-S lsytk SEFC_SALEN : 574- 579: dlgit G-VafnS qltwq SEFC_SALEN : 631- 637: gmnvs GgViahS sgitf SEFC_SALEN : 632- 637: mnvsg G-ViahS sgitf SEFC_SALEN : 755- 759: lknnd G-Viq-S tsivg YEHB_ECOLI : 205- 209: tnnnp G-Vwk-S ntlyl YEHB_ECOLI : 500- 505: lpegw GsVsl-S tlwrd YEHB_ECOLI : 606- 610: dqfny G-Vnl-S hqhqg YEHB_ECOLI : 653- 658: asvsg GiVaw-S ggvnl YEHB_ECOLI : 778- 784: hghni GvVgqgS qlfir YHCD_ECOLI : 276- 281: eirqq G-VlihS ilvpa YHCD_ECOLI : 620- 624: avhdq G-Vtf-S pwtin YHCD_ECOLI : 643- 648: dnnia G-VritS qagpv YHCD_ECOLI : 702- 707: grgav GkVgf-S aitqr YPSE_YERPE : 172- 177: kmvdt G-VhniS syipv YRAJ_ECOLI : 169- 174: yrdar GyVsp-S rwddg YRAJ_ECOLI : 272- 277: sytft G-VqlaS ddnml YRAJ_ECOLI : 309- 315: tirqn GyViyqS nvsag YRAJ_ECOLI : 543- 547: sgqqw G-Vgy-S lnyqy YRAJ_ECOLI : 665- 669: vihph G-Vtl-S qylgn G 7: 11.5102 72( 24) G-x(1,2)-N-x(1,2)-S Occurences: 72(24) AGGC_ECOLI : 199- 204: aslep Gi-NlgS wrirn AGGC_ECOLI : 233- 239: irver GlnNikS rltfg CAFA_YERPE : 496- 501: sipgs GtlNf-S gyrkn CS32_ECOLI : 145- 151: lyaer GlgNikS rlyig CS32_ECOLI : 329- 334: lsliy GqsNf-S ksdns CS32_ECOLI : 405- 410: slgel GslNf-S gtwrn CS32_ECOLI : 675- 680: vtvmd GdqNt-S ivgdn CS32_ECOLI : 805- 810: kdmsl Ga-NltS eptla CS32_ECOLI : 929- 934: dtytv Gl-NvtS nvi FAED_ECOLI : 178- 183: anant GrnNt-S afgsa FAED_ECOLI : 178- 183: anant Gr-NntS afgsa FAED_ECOLI : 274- 280: tpvfs GiaNgpS rvtlt FAED_ECOLI : 545- 550: srnsr GenNw-S asasv FAED_ECOLI : 545- 550: srnsr Ge-NnwS asasv FAED_ECOLI : 625- 630: rayln GvlNh-S qsggt FAND_ECOLI : 493- 497: dnsvt Ga-Nv-S ytqnf FAND_ECOLI : 503- 508: ytqnf GtvNa-S vngsy FASD_ECOLI : 358- 363: yeisl GhyNn-S gatqy FASD_ECOLI : 570- 574: lskli Gk-Ne-S tystl FASD_ECOLI : 805- 809: lhgaw Gy-Nk-S cevsf FIMC_BORPE : 436- 441: qlstt GnaNg-S slrfs FIMC_BORPE : 436- 442: qlstt GnaNgsS lrfsy FIMD_ECOLI : 118- 123: qlasm Gl-NtaS vagmn FIMD_ECOLI : 659- 665: gyagg GdgNsgS tgyat FIMD_SALTY : 217- 222: rlrnn GawNy-S kgdgy FIMD_SALTY : 636- 640: gtlle Gr-Nl-S ysvtq FOCD_ECOLI : 215- 220: lnlkt Gl-NigS wrlrd FOCD_ECOLI : 563- 567: rqlna Gf-Ns-S vndis FOCD_ECOLI : 674- 679: lnyrg GygNa-S agysh HFC1_HAEIN : 574- 578: lslpl Gd-Nh-S adssy HFC1_HAEIN : 595- 599: inqrl Gv-Ng-S fgerh HFC1_HAEIN : 609- 613: hqwsy Gi-Na-S rnnqg HFC1_HAEIN : 690- 694: akves Ga-Nv-S ldyfg HFC1_HAEIN : 715- 719: einyi Gi-Np-S daean HFC2_HAEIN : 162- 167: srwqt Gt-NaaS anydi HFC2_HAEIN : 574- 578: lslpl Gd-Nh-S adssy HFC2_HAEIN : 595- 599: inqrl Gv-Ng-S fgerh HFC2_HAEIN : 609- 613: hqwsy Gi-Na-S rnnqg HFC2_HAEIN : 690- 694: akves Ga-Nv-S ldyfg HFC2_HAEIN : 715- 719: einyi Gi-Np-S daean HFC3_HAEIN : 574- 578: lslpl Gd-Nh-S adssy HFC3_HAEIN : 595- 599: inqrl Gv-Ng-S fgerh HFC3_HAEIN : 609- 613: hqwsy Gi-Na-S rnnqg HFC3_HAEIN : 690- 694: akves Ga-Nv-S ldyfg HFC3_HAEIN : 715- 719: einyi Gi-Np-S daean HTRE_ECOLI : 42- 46: htflm Gq-Na-S nidlt HTRE_ECOLI : 192- 197: hsetp GrkNe-S iyaaf HTRE_ECOLI : 414- 418: gllgl Gl-Nt-S vgafs HTRE_ECOLI : 537- 541: dywas Gq-Nr-S nysig HTRE_ECOLI : 546- 552: snysi GysNstS wgsys LPFC_SALTY : 188- 192: dynfs Gs-Na-S ydahd LPFC_SALTY : 547- 552: yngri GrvNy-S vaytw LPFC_SALTY : 623- 629: gygsn GvgNsgS vnldy MRKC_KLEPN : 191- 196: issan GsdNs-S aylgv MRKC_KLEPN : 601- 605: assqi Gv-Ng-S ldsen MYFC_YEREN : 623- 628: aqfhs Ge-NsgS lgldw PAPC_ECOLI : 254- 260: anltl GenNinS difrs PAPC_ECOLI : 392- 398: geasw GlsNqwS lygga PAPC_ECOLI : 560- 565: rskyl GrdNd-S aylri PEFC_SALTY : 267- 273: aplit GvaNstS rvtis PEFC_SALTY : 408- 412: gavsa Gm-Nl-S qakyd SEFC_SALEN : 37- 41: lslpp Ge-Na-S flsve SEFC_SALEN : 484- 489: algsl GsvNl-S ynydk SEFC_SALEN : 613- 617: tygei Ga-Ny-S hnein SEFC_SALEN : 626- 630: inrdi Gm-Nv-S ggvia YEHB_ECOLI : 171- 175: dykas Gn-Nk-S tyvrf YEHB_ECOLI : 482- 488: yqndf GrkNsfS anmsq YEHB_ECOLI : 606- 610: dqfny Gv-Nl-S hqhqg YHCD_ECOLI : 261- 266: gvqvt GiaNt-S qarve YHCD_ECOLI : 459- 463: styal Gl-Nw-S nsilg YHCD_ECOLI : 468- 473: snsil GgfNi-S gykty YHCD_ECOLI : 469- 473: nsilg Gf-Ni-S gykty YHCD_ECOLI : 482- 486: tysyd Gd-Nd-S snlni YHCD_ECOLI : 482- 487: tysyd Gd-NdsS nlnin YPSE_YERPE : 172- 177: kmvdt GvhNi-S syipv YPSE_YERPE : 172- 178: kmvdt GvhNisS yipv YRAJ_ECOLI : 295- 300: aptvr GiaNs-S aivti H 8: 11.5102 73( 24) G-x(1,2)-N-x(0,1)-S Occurences: 73(24) AGGC_ECOLI : 814- 817: lkaqw Gt-N-S qcyad CAFA_YERPE : 496- 501: sipgs GtlNfS gyrkn CAFA_YERPE : 566- 569: lsrwl Gn-N-S insny CAFA_YERPE : 779- 782: ssgiv Gd-N-S gvylt CS32_ECOLI : 231- 234: dyils Gs-N-S dlyvk CS32_ECOLI : 329- 334: lsliy GqsNfS ksdns CS32_ECOLI : 405- 410: slgel GslNfS gtwrn CS32_ECOLI : 675- 680: vtvmd GdqNtS ivgdn FAED_ECOLI : 178- 183: anant GrnNtS afgsa FAED_ECOLI : 211- 214: sggds Gd-N-S ttinm FAED_ECOLI : 539- 543: nlgws GsrN-S rgenn FAED_ECOLI : 545- 550: srnsr GenNwS asasv FAED_ECOLI : 625- 630: rayln GvlNhS qsggt FAND_ECOLI : 493- 497: dnsvt Ga-NvS ytqnf FAND_ECOLI : 503- 508: ytqnf GtvNaS vngsy FASD_ECOLI : 358- 363: yeisl GhyNnS gatqy FASD_ECOLI : 570- 574: lskli Gk-NeS tystl FASD_ECOLI : 805- 809: lhgaw Gy-NkS cevsf FIMC_BORPE : 436- 441: qlstt GnaNgS slrfs FIMD_ECOLI : 201- 204: vqnri Gg-N-S hyayl FIMD_ECOLI : 659- 663: gyagg GdgN-S gstgy FIMD_SALTY : 217- 222: rlrnn GawNyS kgdgy FIMD_SALTY : 621- 624: nrnrd Gd-N-S wqtgv FIMD_SALTY : 636- 640: gtlle Gr-NlS ysvtq FOCD_ECOLI : 563- 566: rqlna Gf-N-S svndi FOCD_ECOLI : 563- 567: rqlna Gf-NsS vndis FOCD_ECOLI : 674- 679: lnyrg GygNaS agysh HFC1_HAEIN : 574- 578: lslpl Gd-NhS adssy HFC1_HAEIN : 595- 599: inqrl Gv-NgS fgerh HFC1_HAEIN : 609- 613: hqwsy Gi-NaS rnnqg HFC1_HAEIN : 690- 694: akves Ga-NvS ldyfg HFC1_HAEIN : 715- 719: einyi Gi-NpS daean HFC2_HAEIN : 574- 578: lslpl Gd-NhS adssy HFC2_HAEIN : 595- 599: inqrl Gv-NgS fgerh HFC2_HAEIN : 609- 613: hqwsy Gi-NaS rnnqg HFC2_HAEIN : 690- 694: akves Ga-NvS ldyfg HFC2_HAEIN : 715- 719: einyi Gi-NpS daean HFC3_HAEIN : 574- 578: lslpl Gd-NhS adssy HFC3_HAEIN : 595- 599: inqrl Gv-NgS fgerh HFC3_HAEIN : 609- 613: hqwsy Gi-NaS rnnqg HFC3_HAEIN : 690- 694: akves Ga-NvS ldyfg HFC3_HAEIN : 715- 719: einyi Gi-NpS daean HTRE_ECOLI : 42- 46: htflm Gq-NaS nidlt HTRE_ECOLI : 192- 197: hsetp GrkNeS iyaaf HTRE_ECOLI : 414- 418: gllgl Gl-NtS vgafs HTRE_ECOLI : 537- 541: dywas Gq-NrS nysig HTRE_ECOLI : 546- 550: snysi GysN-S tswgs LPFC_SALTY : 188- 192: dynfs Gs-NaS ydahd LPFC_SALTY : 380- 384: geyra GnyN-S aepkf LPFC_SALTY : 547- 552: yngri GrvNyS vaytw LPFC_SALTY : 623- 627: gygsn GvgN-S gsvnl MRKC_KLEPN : 191- 195: issan GsdN-S saylg MRKC_KLEPN : 191- 196: issan GsdNsS aylgv MRKC_KLEPN : 601- 605: assqi Gv-NgS ldsen MYFC_YEREN : 623- 626: aqfhs Ge-N-S gslgl PAPC_ECOLI : 560- 565: rskyl GrdNdS aylri PAPC_ECOLI : 612- 615: yslna Gl-N-S ggglt PEFC_SALTY : 267- 271: aplit GvaN-S tsrvt PEFC_SALTY : 408- 412: gavsa Gm-NlS qakyd PEFC_SALTY : 569- 572: ssgrm Gm-N-S gvsas SEFC_SALEN : 37- 41: lslpp Ge-NaS flsve SEFC_SALEN : 484- 489: algsl GsvNlS ynydk SEFC_SALEN : 613- 617: tygei Ga-NyS hnein SEFC_SALEN : 626- 630: inrdi Gm-NvS ggvia YEHB_ECOLI : 92- 95: vikrl Gi-N-S dnfas YEHB_ECOLI : 171- 175: dykas Gn-NkS tyvrf YEHB_ECOLI : 482- 486: yqndf GrkN-S fsanm YEHB_ECOLI : 606- 610: dqfny Gv-NlS hqhqg YHCD_ECOLI : 261- 266: gvqvt GiaNtS qarve YHCD_ECOLI : 459- 463: styal Gl-NwS nsilg YHCD_ECOLI : 468- 473: snsil GgfNiS gykty YHCD_ECOLI : 469- 473: nsilg Gf-NiS gykty YHCD_ECOLI : 482- 486: tysyd Gd-NdS snlni YPSE_YERPE : 172- 177: kmvdt GvhNiS syipv YRAJ_ECOLI : 295- 299: aptvr GiaN-S saivt YRAJ_ECOLI : 295- 300: aptvr GiaNsS aivti I 9: 11.5102 60( 24) V-x(2,3)-G-x(4,5)-S Occurences: 60(24) AGGC_ECOLI : 230- 239: ssyir Ver-GlnnikS rltfg AGGC_ECOLI : 256- 265: difds VpfrGgmlg-S denmv AGGC_ECOLI : 293- 302: qarie VrqnGyliq-S rivsp AGGC_ECOLI : 358- 366: ylkyn Vtv-Geyrp-S ddsie AGGC_ECOLI : 655- 665: trqmn VgtsGsmaihS ggiaf AGGC_ECOLI : 792- 801: esagv VddkGkvyl-S glsea CAFA_YERPE : 58- 67: nyfvn VfvnGrkvd-S gnidf CAFA_YERPE : 766- 775: pfgsi VtieGqsss-S givgd CAFA_YERPE : 784- 793: gdnsg VyltGlpkk-S kilvk CAFA_YERPE : 797- 806: kskil Vkw-GrdknqS cssnv CS32_ECOLI : 217- 225: iyssi Vpp-Gdfsi-S dyils CS32_ECOLI : 510- 519: klywh Vnq-GysdnyS ntsmy CS32_ECOLI : 672- 680: gaivt Vmd-Gdqnt-S ivgdn CS32_ECOLI : 682- 692: qntsi VgdnGqlylgS smdtg FAED_ECOLI : 33- 42: lgsas Via-GekldmS fiqgg FAED_ECOLI : 271- 280: lgytp Vfs-GiangpS rvtlt FAED_ECOLI : 348- 357: qhefs Vaa-GlpdddS dlkgg FAED_ECOLI : 395- 405: asagv VaglGylgavS adgay FAED_ECOLI : 677- 686: tpgvk Vts-GdgqtdS dgnlv FAED_ECOLI : 754- 763: rdgef Vpg-GtwardS kntpl FAND_ECOLI : 273- 282: narvt VkqnGvvlh-S elvsp FAND_ECOLI : 384- 394: agiga VgsiGslgavS vsgni FAND_ECOLI : 620- 629: gaiig VkdgGvmlt-S mssns FAND_ECOLI : 620- 629: gaiig Vkd-GgvmltS mssns FAND_ECOLI : 723- 733: dkngf VipmGtavknS ngeii FAND_ECOLI : 758- 766: knder Vff-Gscti-S tsglk FASD_ECOLI : 626- 636: nkals VnwdGdlldgS lgyts FIMC_BORPE : 547- 557: gystq VgrvGvnldvS rtenr FIMC_BORPE : 701- 710: trnaa VdrsGyglv-S ltpys FIMD_ECOLI : 826- 835: qssgi VadnGqvyl-S gmpla FIMD_SALTY : 814- 823: gitsm VgddGqiyl-S glplk FOCD_ECOLI : 275- 284: difdg VnfrGiqla-S ddnmv HFC1_HAEIN : 435- 445: fplkk VsknGyslhgS ysinf HFC2_HAEIN : 435- 445: fplkk VsknGyslhgS ysinf HFC3_HAEIN : 435- 445: fplkh VsknGyslhgS ysinf HTRE_ECOLI : 262- 271: etfds VsirGirly-S dsrml HTRE_ECOLI : 681- 690: tdggf VlhsGgltf-S ndsfs LPFC_SALTY : 270- 279: difds VqmrGvqlt-S deeml LPFC_SALTY : 790- 799: esssi VgedGqlyi-S gmrqk MRKC_KLEPN : 740- 750: tvaqv VpweGsvvkvS fdttl MRKC_KLEPN : 787- 797: gkeig VvgqGsmmfiS dasap MRKC_KLEPN : 788- 797: keigv Vgq-GsmmfiS dasap MYFC_YEREN : 301- 310: qarve VrqnGylly-S tvvsp MYFC_YEREN : 417- 426: tagmg Vml-GdygalS ssitq MYFC_YEREN : 681- 690: gtaal VevpGvsgv-S tsedh PAPC_ECOLI : 103- 112: ltsdm VrlmGltae-S ldkvv PAPC_ECOLI : 303- 313: narvv VsqqGrvlydS mvpag PAPC_ECOLI : 543- 552: vclta Vlq-GvavglS asrsk PAPC_ECOLI : 547- 556: avlqg Vav-GlsasrS kylgr PAPC_ECOLI : 572- 580: ylris Vpl-Gtgta-S ysgsm PAPC_ECOLI : 787- 796: relgm VadeGlawl-S gvtpg PEFC_SALTY : 184- 193: nadlm Vnl-GrwvlaS nmsas PEFC_SALTY : 661- 671: pgvkg VrinGsaptnS kgytv SEFC_SALEN : 273- 282: natve VrqnGyliy-S tsvpp SEFC_SALEN : 302- 310: iadlg Vgv-Gvldv-S iyekn SEFC_SALEN : 629- 637: digmn Vsg-Gviah-S sgitf SEFC_SALEN : 629- 638: digmn Vsg-GviahsS gitfg SEFC_SALEN : 763- 772: qstsi VgedGqayv-S glsgv YEHB_ECOLI : 650- 658: qagas Vsg-Givaw-S ggvnl YHCD_ECOLI : 257- 266: tsgsg VqvtGiant-S qarve YPSE_YERPE : 169- 177: sfvkm Vdt-Gvhni-S syipv YPSE_YERPE : 169- 178: sfvkm Vdt-GvhnisS yipv YRAJ_ECOLI : 785- 794: gqqsi VdegGilyl-S gissk YRAJ_ECOLI : 785- 794: gqqsi Vde-GgilylS gissk J 10: 11.5102 55( 24) Y-x(2,3)-S-x(3,4)-S Occurences: 55(24) AGGC_ECOLI : 247- 255: tfgdd Ytp-SdifdS vpfrg AGGC_ECOLI : 298- 306: vrqng YliqSriv-S pgafa AGGC_ECOLI : 458- 467: sfaag YqdsSagyhS ladvl AGGC_ECOLI : 522- 530: kvkqd YigaSysn-S wkgit CAFA_YERPE : 236- 244: tlget YsdsSifd-S ipikg CAFA_YERPE : 236- 244: tlget Ysd-SsifdS ipikg CAFA_YERPE : 507- 516: gyrkn YwrdSrsttS fsvgy CAFA_YERPE : 627- 635: nyrgt YgeiSgny-S ydqtq CS32_ECOLI : 182- 190: tdenm Ypy-SektyS pivkg CS32_ECOLI : 227- 234: fsisd Yil-Sgsn-S dlyvk CS32_ECOLI : 328- 336: alsli Ygq-SnfskS dnskn CS32_ECOLI : 393- 400: nskns Yta-Sinh-S lgelg CS32_ECOLI : 440- 448: fngka YlsgSlir-S elmnf CS32_ECOLI : 873- 881: dssat Yki-StklgS sndvn FAED_ECOLI : 499- 507: gwqrs YypaSmtg-S yrysd FAED_ECOLI : 500- 507: wqrsy Ypa-Smtg-S yrysd FAED_ECOLI : 566- 573: lfdrr Yss-Sasv-S tskgg FAND_ECOLI : 412- 419: etdqg Yst-Sany-S knvga FAND_ECOLI : 589- 597: slstn Yts-SmfrtS asvsk FASD_ECOLI : 500- 508: qsldd YgslSlia-S qqnyw FASD_ECOLI : 512- 519: asqqn Ywt-Sdyv-S rsfsl FASD_ECOLI : 517- 525: ywtsd YvsrSfsl-S hsfgw FASD_ECOLI : 806- 813: hgawg Ynk-Scev-S fnlng FIMC_BORPE : 706- 715: vdrsg YglvSltpyS lneve FIMD_ECOLI : 230- 237: nttws Yns-Sdrs-S gsknk FIMD_ECOLI : 463- 470: svrfl Ynk-Slne-S gtniq FIMD_SALTY : 565- 572: wqgis Ysl-Swsw-S esvgs FIMD_SALTY : 653- 660: sssng Ysg-Sasa-S wqaty FOCD_ECOLI : 675- 683: nyrgg YgnaSagy-S hsggy HFC1_HAEIN : 635- 643: nsigs Yra-SysrdS lknrs HFC1_HAEIN : 639- 648: syras YsrdSlknrS tslgv HFC2_HAEIN : 635- 643: nsigs Yra-SysrdS lknrs HFC2_HAEIN : 639- 648: syras YsrdSlknrS tslga HFC3_HAEIN : 635- 643: nsigs Yra-SysrdS lknrs HFC3_HAEIN : 639- 648: syras YsrdSlknrS islga HTRE_ECOLI : 439- 447: pddkt YqgqSyrv-S wnklf HTRE_ECOLI : 533- 541: gswsd Ywa-SgqnrS nysig HTRE_ECOLI : 547- 555: nysig Ysn-StswgS ysvsa HTRE_ECOLI : 556- 563: tswgs Ysv-Saqr-S wnedg LPFC_SALTY : 184- 192: allvd Ynf-SgsnaS ydahd MRKC_KLEPN : 651- 659: sqgeg Yrq-SgvgaS gtlia MYFC_YEREN : 306- 314: vrqng YllyStvv-S pgpfe MYFC_YEREN : 583- 591: dtyaa YrmtSsdn-S kdhem PAPC_ECOLI : 214- 221: rlrad Yqg-Sqeq-S rynge PEFC_SALTY : 128- 136: rvdfs YgsqSlvf-S ipqsf PEFC_SALTY : 431- 438: svsak Yak-Sfsd-S sdlql PEFC_SALTY : 431- 439: svsak Yak-SfsdsS dlqll PEFC_SALTY : 537- 544: ldkpd Yst-Slsf-S ipftl SEFC_SALEN : 448- 457: yyskn YrtfSeaihS sehde SEFC_SALEN : 521- 529: slsls Ytk-StskiS eened YEHB_ECOLI : 158- 165: afyts Yyl-Sqyy-S dykas YEHB_ECOLI : 167- 175: qyysd Yka-SgnnkS tyvrf YEHB_ECOLI : 231- 239: rvgdm Yts-SdifdS vrfrg YHCD_ECOLI : 345- 353: rvddd Yde-SpwviS assgw YHCD_ECOLI : 376- 384: ivaen YqaaSirs-S lvplp YPSE_YERPE : 156- 164: aflln YmeiSvkp-S fvkmv YRAJ_ECOLI : 635- 643: syrsp YgtfSagy-S ygnds K 11: 11.5102 50( 24) L-x(5)-S-x(3,5)-S Occurences: 50(24) AGGC_ECOLI : 210- 220: wrirn LttwnkSsgq--S gkwes CAFA_YERPE : 552- 562: ktsel LsniwlSfpl--S rwlgn CS32_ECOLI : 298- 309: ydftv LtsleySgfyr-S leigl CS32_ECOLI : 472- 484: nipfg LsrgiqSvsyntS svkgg CS32_ECOLI : 740- 751: fssml LygkkiSflsa-S vwxvi FAED_ECOLI : 233- 243: alsad LavgktStgd--S llgst FAED_ECOLI : 487- 498: qpvgg LfslsvSgwqr-S yypas FAED_ECOLI : 561- 571: svpft LfdrrySssa--S vstsk FAED_ECOLI : 561- 573: svpft LfdrrySssasvS tskgg FAND_ECOLI : 12- 22: qilki LllcliSsks--S aseke FAND_ECOLI : 12- 24: qilki LllcliSskssaS ekeln FAND_ECOLI : 13- 24: ilkil LlclisSkssa-S ekeln FAND_ECOLI : 390- 400: gsigs LgavsvSgni--S raknq FAND_ECOLI : 585- 597: nesvs LstnytSsmfrtS asvsk FASD_ECOLI : 454- 466: gttvt LatyryStkdfyS fndfv FASD_ECOLI : 568- 580: iplsk LigkneStystlS ynvtk FIMC_BORPE : 577- 589: nlsip LygatsSgvvtgS lartg FIMD_ECOLI : 606- 618: pfshw LrsdskSqwrhaS asysm FIMD_SALTY : 45- 56: fnpaf LsadtaSvadl-S rfekg FOCD_ECOLI : 560- 572: rtdrq LnagfnSsvndiS wslny FOCD_ECOLI : 831- 841: ngqvy LsgmplSgqv--S vkwgs HFC1_HAEIN : 644- 654: ysrds LknrstSlgv--S gavva HFC2_HAEIN : 644- 654: ysrds LknrstSlga--S gavva HFC3_HAEIN : 644- 654: ysrds LknrsiSlga--S gavva HTRE_ECOLI : 687- 697: lhsgg LtfsndSfsd--S dtlav LPFC_SALTY : 181- 192: gvnal LvdynfSgsna-S ydahd LPFC_SALTY : 442- 452: qaksk LaneenSegq--S yrfly MRKC_KLEPN : 318- 328: pgpft LqdvypSgyg--S dlevs MYFC_YEREN : 455- 467: rynkt LqasdtSfsvvnS qysta PAPC_ECOLI : 559- 571: srsky LgrdndSaylriS vplgt PAPC_ECOLI : 574- 584: risvp LgtgtaSysg--S msndr PAPC_ECOLI : 574- 586: risvp LgtgtaSysgsmS ndryv PAPC_ECOLI : 609- 621: ldsys LnaglnSgggltS qrqin PAPC_ECOLI : 645- 655: anias LqkgytSfgv--S asgga PAPC_ECOLI : 645- 657: anias LqkgytSfgvsaS ggati PEFC_SALTY : 13- 25: fklsa LslalfShlsfaS tdsel PEFC_SALTY : 532- 542: skrpy LdkpdyStsl--S fsipf PEFC_SALTY : 532- 544: skrpy LdkpdyStslsfS ipftl PEFC_SALTY : 761- 773: agngv LlmnmlSapsrvS vergd SEFC_SALEN : 11- 22: itlfv LtsvfhSgnvf-S rqynf SEFC_SALEN : 125- 135: aanqs LllnapSkil--S pidse SEFC_SALEN : 512- 524: sygkn LngvslSlsytkS tskis YEHB_ECOLI : 187- 198: sglnl LgwqlhSdasf-S ktnnn YEHB_ECOLI : 495- 505: nmsqs LpegwgSvsl--S tlwrd YHCD_ECOLI : 155- 167: gtaal LnyslmSsraefS ngssd YHCD_ECOLI : 388- 398: sslvp LpdltvSsqi--S tsqdt YHCD_ECOLI : 388- 400: sslvp LpdltvSsqistS qdtkd YHCD_ECOLI : 467- 479: wsnsi LggfniSgyktyS ydgdn YHCD_ECOLI : 522- 534: eddgd LfyvniSipfgrS ntatl YHCD_ECOLI : 587- 599: sissn LhytqvSlaagaS gsdsr YPSE_YERPE : 154- 164: itafl LnymeiSvkp--S fvkmv YRAJ_ECOLI : 255- 266: ksqll LgesatSgsif-S sytft YRAJ_ECOLI : 255- 267: ksqll LgesatSgsifsS ytftg YRAJ_ECOLI : 576- 587: plerw LprsrvSyqmt-S qkdrp YRAJ_ECOLI : 604- 616: ldgsl LddgrlSysleqS ldddn YRAJ_ECOLI : 627- 639: nhnss LnasyrSpygtfS agysy YRAJ_ECOLI : 791- 802: deggi LylsgiSsksq-S wtvrw L 12: 11.5102 51( 24) G-x(1,2)-A-x(3,4)-Y Occurences: 51(24) AGGC_ECOLI : 478- 484: dtyrn Gt-Ayrs-Y dnrir CAFA_YERPE : 158- 166: qlwdd GipAlfmnY ntnmq CS32_ECOLI : 77- 85: klwde GenAlftsY nfsed CS32_ECOLI : 96- 102: yyhfk Gd-Ards-Y sqyan CS32_ECOLI : 597- 603: etdwr Gr-Afig-Y lspyq FAED_ECOLI : 60- 67: waaln GsyApgr-Y lvdls FAED_ECOLI : 115- 123: dyfre GydAtrqcY vltka FAED_ECOLI : 163- 171: vdwdy GtsAfrvnY nanan FAED_ECOLI : 362- 370: sdlkg GvfAasygY gldgl FAED_ECOLI : 393- 400: qgasa GvvAglg-Y lgavs FAED_ECOLI : 408- 415: avsad GayAtak-Y rdgsh FAND_ECOLI : 516- 523: gsysr GdgAksd-Y mlgfn FASD_ECOLI : 16- 24: liigi GsnAvagdY fdpsl FASD_ECOLI : 156- 164: eswnq GvpAllidY rlsgs FIMC_BORPE : 172- 180: dewds GitAfrlgY qynya FIMC_BORPE : 312- 319: davpp GpfAidd-Y spasy FIMD_ECOLI : 181- 189: elwdp GinAgllnY nfsgn FIMD_ECOLI : 403- 411: stllh GlpAgwtiY ggtql FIMD_ECOLI : 667- 673: nsgst Gy-Atln-Y rggyg FIMD_ECOLI : 678- 684: yrggy Gn-Anig-Y shsdd FIMD_ECOLI : 743- 749: rtdwr Gy-Avlp-Y ateyr FIMD_SALTY : 177- 185: eewde GipAalinY sftgs FIMD_SALTY : 392- 400: gtvia GlpAgltaY ggtql FIMD_SALTY : 731- 737: ktdwr Gy-Avmp-Y atvyr FOCD_ECOLI : 182- 190: eywdn GitAallnY dfsgn FOCD_ECOLI : 665- 671: gsskt Gy-Asln-Y rggyg FOCD_ECOLI : 676- 682: yrggy Gn-Asag-Y shsgg FOCD_ECOLI : 741- 747: stdwr Gy-Avlp-Y atdyr HFC1_HAEIN : 162- 170: srwqt GtnAafanY dinyy HFC1_HAEIN : 699- 705: sldyf Gn-Avvp-Y tspye HFC2_HAEIN : 162- 170: srwqt GtnAasanY dinyy HFC2_HAEIN : 699- 705: sldyf Gn-Avvp-Y tspye HFC3_HAEIN : 162- 170: srwqt GtnAafanY dinyy HFC3_HAEIN : 699- 705: sldyf Gn-Avmp-Y tspye HTRE_ECOLI : 56- 64: tryse GnpAipgvY dvsvy HTRE_ECOLI : 173- 181: slwen GinAamlsY nlngy LPFC_SALTY : 176- 184: sqwde GvnAllvdY nfsgs LPFC_SALTY : 639- 645: yqggv Gs-Aslg-Y nhnrd LPFC_SALTY : 704- 710: evdwm Gn-Avvp-Y ltpyr MRKC_KLEPN : 704- 710: ridsn Gy-Ailp-Y lrpyr MYFC_YEREN : 173- 181: erwdd GitAfllnY manss PAPC_ECOLI : 550- 558: qgvav GlsAsrskY lgrdn PEFC_SALTY : 154- 162: srwdy GvpAarlkY sanas SEFC_SALEN : 150- 158: niwdd GinAfllnY ranyl SEFC_SALEN : 418- 425: tsnen Gh-AygirY nknia YEHB_ECOLI : 150- 158: enwer GinAfytsY ylsqy YEHB_ECOLI : 437- 443: tstrf Gl-Aawr-Y ssrdy YHCD_ECOLI : 149- 157: tnaat GgtAallnY slmss YHCD_ECOLI : 150- 157: naatg GtaAlln-Y slmss YHCD_ECOLI : 150- 157: naatg Gt-AallnY slmss YPSE_YERPE : 148- 156: erwdd GitAfllnY meisv YRAJ_ECOLI : 701- 707: atdpf Gy-Avvp-Y lttyq M 13: 11.5102 62( 24) S-x(4,5)-A-x(3,4)-G Occurences: 62(24) AGGC_ECOLI : 188- 199: sntrn SsdnfwAslepG inlgs AGGC_ECOLI : 189- 199: ntrns Sdnfw-AslepG inlgs CAFA_YERPE : 181- 192: reggk SldsyyAqlqpG lniga CAFA_YERPE : 296- 307: nelvp SgpfelAnlplG ggsge CAFA_YERPE : 386- 395: gglqg Sqnyh-Aeal-G igaml CS32_ECOLI : 136- 147: tkgew SnnylyAerglG niksr FAED_ECOLI : 25- 36: lslvm SavlgsAsviaG ekldm FAED_ECOLI : 609- 618: gdggt Ssyln-Asys-G drayl FAED_ECOLI : 615- 625: sylna SysgdrAyln-G vlnhs FAND_ECOLI : 377- 388: feqhy SnagigAvgsiG slgav FAND_ECOLI : 386- 397: igavg SigslgAvsvsG nisra FAND_ECOLI : 606- 615: sknrn Stnas-Aqig-G aiigv FASD_ECOLI : 177- 188: kynyg SsqnfyAnaflG fnlmg FASD_ECOLI : 178- 188: ynygs Sqnfy-AnaflG fnlmg FASD_ECOLI : 372- 382: qyyne Spfly-AswsrG yrngm FIMC_BORPE : 11- 20: lilam Slafa-Aaak-G esapd FIMC_BORPE : 574- 584: vmlnl SiplygAtss-G vvtgs FIMC_BORPE : 660- 669: yqing Sgglv-Ahag-G vtfgq FIMD_ECOLI : 116- 126: raqla SmglntAsva-G mnlla FIMD_ECOLI : 293- 303: nmlpd Sqrgf-ApvihG iargt FIMD_ECOLI : 580- 589: wtlsy Sltkn-Awqk-G rdqml FIMD_ECOLI : 650- 661: nnlsy SvqtgyAgggdG nsgst FIMD_ECOLI : 698- 707: lyygv Sggvl-Ahan-G vtlgq FIMD_SALTY : 282- 292: nmypd Slqgy-AptvrG iarta FOCD_ECOLI : 292- 302: nmvpd Sqrgy-AptihG isrgt FOCD_ECOLI : 696- 705: lyygl Sggil-Ahan-G ltlsq HFC1_HAEIN : 269- 280: glria SddrmlApsqrG fapvv HFC1_HAEIN : 277- 287: rmlap Sqrgf-ApvvrG vantn HFC1_HAEIN : 654- 663: tslgv Sgavv-Ahky-G itlsq HFC1_HAEIN : 673- 684: qpvge SfaiihAkdaaG akves HFC2_HAEIN : 269- 280: glria SddrmlApsqrG fapvv HFC2_HAEIN : 277- 287: rmlap Sqrgf-ApvvrG vantn HFC2_HAEIN : 654- 663: tslga Sgavv-Ahky-G itlsq HFC2_HAEIN : 673- 684: qpvge SfaiihAkdaaG akves HFC3_HAEIN : 269- 280: glria SddrmlApsqrG fapvv HFC3_HAEIN : 277- 287: rmlap Sqrgf-ApvvrG vantn HFC3_HAEIN : 654- 663: islga Sgavv-Ahkh-G itlsq HFC3_HAEIN : 673- 684: qpvge SfaiihAkdaaG akves HTRE_ECOLI : 754- 764: dvelk Stsav-AvprqG svvfa LPFC_SALTY : 287- 297: emlpd Sqrgf-ApvirG iaksn MRKC_KLEPN : 53- 63: ekvdp SrfstsAise-G vysld MRKC_KLEPN : 659- 668: sgvga Sgtli-Ahqh-G vvfsp MYFC_YEREN : 405- 414: vggqw Sphyq-Atta-G mgvml PAPC_ECOLI : 398- 407: lsnqw Slygg-Avla-G dynal PAPC_ECOLI : 606- 616: ndgld Sysln-AglnsG gglts PAPC_ECOLI : 655- 664: tsfgv Sasgg-Atit-G kgaal PAPC_ECOLI : 734- 743: veatr Svves-Alte-G aigyr PEFC_SALTY : 196- 205: lasnm Sasry-Adgs-G eftar PEFC_SALTY : 375- 386: gygfd SttlnaAsilhG kyqag SEFC_SALEN : 385- 395: vniyn Syaig-AskdiG eygal SEFC_SALEN : 473- 484: kkstt SmllsqAlgslG svnls SEFC_SALEN : 630- 639: igmnv Sggvi-Ahss-G itfgq YEHB_ECOLI : 356- 366: gaskq Sdfvq-AgyqyG fnnll YEHB_ECOLI : 651- 660: agasv Sggiv-Awsg-G vnlan YEHB_ECOLI : 716- 726: lmldv SqsdseAelr-G nrkia YHCD_ECOLI : 158- 169: allny SlmssrAefsnG ssdys YHCD_ECOLI : 170- 180: efsng SsdysqAale-G ginin YHCD_ECOLI : 170- 181: efsng SsdysqAalegG inind YHCD_ECOLI : 171- 180: fsngs Sdysq-Aale-G ginin YHCD_ECOLI : 171- 181: fsngs SdysqaAleg-G inind YHCD_ECOLI : 171- 181: fsngs Sdysq-AalegG inind YHCD_ECOLI : 232- 241: vnlnn Svleg-Asiy-G ieiap YPSE_YERPE : 128- 138: mqlvl Sipqa-AlrpeG evpie YRAJ_ECOLI : 285- 295: nmlpn Sqrgf-AptvrG ianss YRAJ_ECOLI : 410- 419: ggllg Sedyy-Algi-G iggtl N 14: 11.5102 53( 24) S-x(3,4)-A-x(4,5)-G Occurences: 53(24) AGGC_ECOLI : 189- 199: ntrns SdnfwAslep-G inlgs AGGC_ECOLI : 658- 667: mnvgt Sgsm-Aihsg-G iafgq CAFA_YERPE : 386- 397: gglqg SqnyhAealgiG amlgd CS32_ECOLI : 372- 383: trggy SslrdAldyeiG eytfn CS32_ECOLI : 373- 383: rggys Slrd-AldyeiG eytfn FAED_ECOLI : 200- 211: ghwvv SssatAsggdsG dnstt FAED_ECOLI : 201- 211: hwvvs Ssat-AsggdsG dnstt FAED_ECOLI : 391- 402: dwqga SagvvAglgylG avsad FAND_ECOLI : 631- 642: mltsm SsnsvAivqmeG lagya FAND_ECOLI : 632- 642: ltsms Snsv-AivqmeG lagya FASD_ECOLI : 178- 188: ynygs SqnfyAnafl-G fnlmg FASD_ECOLI : 372- 382: qyyne SpflyAswsr-G yrngm FIMC_BORPE : 11- 20: lilam Slaf-Aaaak-G esapd FIMC_BORPE : 253- 264: gdvfs SgeyfApysmrG mlvgs FIMD_ECOLI : 293- 303: nmlpd SqrgfApvih-G iargt FIMD_ECOLI : 665- 675: dgnsg Stgy-AtlnyrG gygna FIMD_SALTY : 282- 292: nmypd SlqgyAptvr-G iarta FIMD_SALTY : 658- 669: ysgsa SaswqAtygtlG vgyny FOCD_ECOLI : 292- 302: nmvpd SqrgyAptih-G isrgt FOCD_ECOLI : 662- 673: gyegs SktgyAslnyrG gygna HFC1_HAEIN : 73- 84: eekge SdiifAdnpatG raelc HFC1_HAEIN : 277- 287: rmlap SqrgfApvvr-G vantn HFC1_HAEIN : 607- 618: erhqw SyginAsrnnqG yrsyd HFC2_HAEIN : 73- 84: eekge SdiifAdnpatG raelc HFC2_HAEIN : 277- 287: rmlap SqrgfApvvr-G vantn HFC2_HAEIN : 607- 618: erhqw SyginAsrnnqG yrsyd HFC3_HAEIN : 73- 84: eekgv SdiifAdnpatG rtelc HFC3_HAEIN : 277- 287: rmlap SqrgfApvvr-G vantn HFC3_HAEIN : 607- 618: erhqw SyginAsrnnqG yrsyd HTRE_ECOLI : 697- 707: dsfsd Sdtl-AvvqapG aqgar HTRE_ECOLI : 754- 764: dvelk StsavAvprq-G svvfa LPFC_SALTY : 287- 297: emlpd SqrgfApvir-G iaksn MRKC_KLEPN : 293- 302: rdvaq Snal-Atvrq-G sniiy MRKC_KLEPN : 800- 810: fisda Sapk-AtvkwsG gqcsv MYFC_YEREN : 405- 416: vggqw SphyqAttagmG vmlgd PAPC_ECOLI : 606- 616: ndgld SyslnAglns-G gglts PAPC_ECOLI : 606- 617: ndgld SyslnAglnsgG gltsq PAPC_ECOLI : 639- 648: planl Sani-Aslqk-G ytsfg PAPC_ECOLI : 655- 666: tsfgv SasggAtitgkG aalha PEFC_SALTY : 193- 203: rwvla Snms-AsryadG sgeft PEFC_SALTY : 230- 241: lllgk SqtrsAlfsdfG fygaa PEFC_SALTY : 375- 386: gygfd SttlnAasilhG kyqag PEFC_SALTY : 394- 403: qaggv Svtq-Alggf-G avsag SEFC_SALEN : 385- 395: vniyn SyaigAskdi-G eygal SEFC_SALEN : 647- 657: fgqsi Sdta-AlveakG vsgak YEHB_ECOLI : 356- 366: gaskq SdfvqAgyqy-G fnnll YEHB_ECOLI : 641- 652: sysqs StyrqAgasvsG givaw YEHB_ECOLI : 668- 678: lanrl Setf-AvmnapG ikday YEHB_ECOLI : 796- 806: nevpp Svnv-AidkqqG lscti YHCD_ECOLI : 171- 181: fsngs SdysqAaleg-G inind YHCD_ECOLI : 611- 620: yngtm Sggi-Avhdq-G vtfsp YPSE_YERPE : 128- 138: mqlvl SipqaAlrpe-G evpie YPSE_YERPE : 128- 138: mqlvl Sipq-AalrpeG evpie YRAJ_ECOLI : 285- 295: nmlpn SqrgfAptvr-G ianss YRAJ_ECOLI : 410- 421: ggllg SedyyAlgigiG gtlga O 15: 11.5102 53( 24) S-x(3,4)-A-x(3,4)-G Occurences: 53(24) AGGC_ECOLI : 189- 199: ntrns SdnfwAslepG inlgs AGGC_ECOLI : 658- 666: mnvgt Sgsm-Aihs-G giafg AGGC_ECOLI : 658- 667: mnvgt Sgsm-AihsgG iafgq CAFA_YERPE : 386- 395: gglqg SqnyhAeal-G igaml CS32_ECOLI : 659- 667: ltlkk Sngd-Avpf-G aivtv FAED_ECOLI : 498- 506: sgwqr Syyp-Asmt-G syrys FAED_ECOLI : 609- 618: gdggt SsylnAsys-G drayl FAED_ECOLI : 610- 618: dggts Syln-Asys-G drayl FAED_ECOLI : 617- 625: lnasy Sgdr-Ayln-G vlnhs FAND_ECOLI : 606- 615: sknrn StnasAqig-G aiigv FASD_ECOLI : 178- 188: ynygs SqnfyAnaflG fnlmg FASD_ECOLI : 372- 382: qyyne SpflyAswsrG yrngm FIMC_BORPE : 11- 20: lilam SlafaAaak-G esapd FIMC_BORPE : 11- 20: lilam Slaf-AaaakG esapd FIMC_BORPE : 171- 179: pdewd Sgit-Afrl-G yqyny FIMC_BORPE : 660- 669: yqing SgglvAhag-G vtfgq FIMD_ECOLI : 293- 303: nmlpd SqrgfApvihG iargt FIMD_ECOLI : 580- 589: wtlsy SltknAwqk-G rdqml FIMD_ECOLI : 698- 707: lyygv SggvlAhan-G vtlgq FIMD_SALTY : 282- 292: nmypd SlqgyAptvrG iarta FOCD_ECOLI : 292- 302: nmvpd SqrgyAptihG isrgt FOCD_ECOLI : 696- 705: lyygl SggilAhan-G ltlsq FOCD_ECOLI : 811- 819: avpfg Svvt-Arng-G ssiag HFC1_HAEIN : 277- 287: rmlap SqrgfApvvrG vantn HFC1_HAEIN : 654- 663: tslgv SgavvAhky-G itlsq HFC2_HAEIN : 277- 287: rmlap SqrgfApvvrG vantn HFC2_HAEIN : 654- 663: tslga SgavvAhky-G itlsq HFC3_HAEIN : 277- 287: rmlap SqrgfApvvrG vantn HFC3_HAEIN : 654- 663: islga SgavvAhkh-G itlsq HTRE_ECOLI : 197- 205: grkne Siya-Afng-G mnlga HTRE_ECOLI : 754- 764: dvelk StsavAvprqG svvfa LPFC_SALTY : 287- 297: emlpd SqrgfApvirG iaksn MRKC_KLEPN : 293- 302: rdvaq Snal-AtvrqG sniiy MRKC_KLEPN : 659- 668: sgvga SgtliAhqh-G vvfsp MYFC_YEREN : 405- 414: vggqw SphyqAtta-G mgvml PAPC_ECOLI : 398- 407: lsnqw SlyggAvla-G dynal PAPC_ECOLI : 606- 616: ndgld SyslnAglnsG gglts PAPC_ECOLI : 639- 648: planl Sani-AslqkG ytsfg PAPC_ECOLI : 655- 664: tsfgv SasggAtit-G kgaal PAPC_ECOLI : 734- 743: veatr SvvesAlte-G aigyr PEFC_SALTY : 196- 205: lasnm SasryAdgs-G eftar PEFC_SALTY : 394- 403: qaggv Svtq-AlggfG avsag SEFC_SALEN : 385- 395: vniyn SyaigAskdiG eygal SEFC_SALEN : 630- 639: igmnv SggviAhss-G itfgq YEHB_ECOLI : 9- 17: mtpla Saiv-Alll-G ieaya YEHB_ECOLI : 356- 366: gaskq SdfvqAgyqyG fnnll YEHB_ECOLI : 651- 660: agasv SggivAwsg-G vnlan YEHB_ECOLI : 718- 726: ldvsq Sdse-Aelr-G nrkia YHCD_ECOLI : 171- 180: fsngs SdysqAale-G ginin YHCD_ECOLI : 171- 181: fsngs SdysqAalegG inind YHCD_ECOLI : 232- 241: vnlnn SvlegAsiy-G ieiap YHCD_ECOLI : 611- 620: yngtm Sggi-AvhdqG vtfsp YPSE_YERPE : 128- 138: mqlvl SipqaAlrpeG evpie YRAJ_ECOLI : 66- 74: dlsrf Skky-Aqlp-G tyqvd YRAJ_ECOLI : 285- 295: nmlpn SqrgfAptvrG ianss YRAJ_ECOLI : 410- 419: ggllg SedyyAlgi-G iggtl P 16: 11.5102 51( 24) S-x(5)-L-x(1,3)-G Occurences: 51(24) AGGC_ECOLI : 25- 34: iahtf SfdaslLnh-G sggid AGGC_ECOLI : 634- 642: lnlrw SggygeLt--G mysyn CAFA_YERPE : 42- 52: esidv SlfnqgLqlpG nyfvn CS32_ECOLI : 223- 231: ppgdf SisdyiLs--G snsdl CS32_ECOLI : 304- 313: tsley SgfyrsLei-G lgkml FAED_ECOLI : 239- 249: avgkt StgdslLgstG tygvs FAED_ECOLI : 302- 312: pagpf SitdvpLytsG dvtmk FAED_ECOLI : 333- 342: qnfpl SvmagqLsp-G qhefs FAED_ECOLI : 617- 625: lnasy SgdrayLn--G vlnhs FAND_ECOLI : 174- 182: knded SsiygnLe--G nvnid FAND_ECOLI : 211- 219: ddvtl SraiksLe--G dliig FASD_ECOLI : 204- 214: ttnym SynskdLynkG erqgs FASD_ECOLI : 396- 405: setiq SrkyqlLgv-G stlsl FASD_ECOLI : 562- 570: fgfys SiplskLi--G knest FIMC_BORPE : 348- 356: tvpya SavrliLp--G qtqws FIMD_ECOLI : 398- 407: trffq StllhgLpa-G wtiyg FIMD_ECOLI : 470- 478: kslne SgtniqLv--G yryst FIMD_ECOLI : 665- 675: dgnsg StgyatLnyrG gygna FIMD_ECOLI : 687- 696: igysh SddikqLyy-G vsggv FIMD_SALTY : 197- 205: gtdsd SyflslLs--G lnygp FIMD_SALTY : 589- 597: lafnm SvpfsvLt--G rryar FOCD_ECOLI : 685- 694: agysh SggyrqLyy-G lsggi HFC1_HAEIN : 436- 444: plkkv SkngysLh--G sysin HFC1_HAEIN : 689- 699: gakve SganvsLdyfG navvp HFC2_HAEIN : 436- 444: plkkv SkngysLh--G sysin HFC2_HAEIN : 689- 699: gakve SganvsLdyfG navvp HFC3_HAEIN : 436- 444: plkhv SkngysLh--G sysin HFC3_HAEIN : 689- 699: gakve SganvsLdyfG navmp HTRE_ECOLI : 349- 358: fsqpf SsvvqmLrp-G vgrwd LPFC_SALTY : 57- 65: lsmye SnkaehLp--G kyrvs LPFC_SALTY : 411- 419: ggaif SddyysLa--G glgkn LPFC_SALTY : 411- 420: ggaif SddyysLag-G lgknf LPFC_SALTY : 463- 471: sksfn SgtdfrLl--G ykyst MRKC_KLEPN : 206- 216: vnagl SwdgwlLkhiG nlnwq MYFC_YEREN : 198- 207: tgeqq SshyvqLyp-G fniga MYFC_YEREN : 351- 360: ftvpy SvpairLrk-G rlryn PAPC_ECOLI : 49- 57: dftrf SeagyvLp--G qylld PAPC_ECOLI : 78- 86: aslqi SfvepaLs--G dkaek PAPC_ECOLI : 639- 648: planl SaniasLqk-G ytsfg PAPC_ECOLI : 734- 743: veatr SvvesaLte-G aigyr PEFC_SALTY : 39- 48: flqgm SaipsvLks-G sdfpa PEFC_SALTY : 136- 144: qslvf SipqsfLv--G ktdps PEFC_SALTY : 219- 228: lstai SqvqgdLll-G ksqtr PEFC_SALTY : 509- 517: iggdv SlsttiLd--G vsvfl SEFC_SALEN : 326- 335: ytvpy StpvlsLpd-G yskys YEHB_ECOLI : 9- 17: mtpla SaivalLl--G ieaya YEHB_ECOLI : 718- 726: ldvsq SdseaeLr--G nrkia YHCD_ECOLI : 50- 58: ishyf SrsarfLp--G eysli YPSE_YERPE : 13- 22: gaqry SfdpnlLvd-G nnntd YPSE_YERPE : 128- 138: mqlvl SipqaaLrpeG evpie YRAJ_ECOLI : 66- 74: dlsrf SkkyaqLp--G tyqvd YRAJ_ECOLI : 410- 419: ggllg SedyyaLgi-G iggtl Q 17: 11.5102 60( 24) L-x(0,1)-N-x(0,1)-S Occurences: 60(24) AGGC_ECOLI : 59- 62: pvdii L-NgS ridsr CAFA_YERPE : 498- 501: pgsgt L-NfS gyrkn CAFA_YERPE : 533- 536: gmslt L-NlS ktqni CAFA_YERPE : 565- 569: plsrw LgNnS insny CS32_ECOLI : 407- 410: gelgs L-NfS gtwrn FAED_ECOLI : 58- 61: evwaa L-NgS yapgr FAED_ECOLI : 612- 615: gtssy L-NaS ysgdr FAED_ECOLI : 627- 630: ylngv L-NhS qsggt FAED_ECOLI : 694- 696: nlvvp L-N-S ydwnt FAED_ECOLI : 715- 719: plste LtNtS qkvvp FAND_ECOLI : 366- 369: lnllt L-NaS llfeq FASD_ECOLI : 493- 496: ritls L-NqS lddyg FIMC_BORPE : 212- 215: fkgwy LrN-S stlgw FIMC_BORPE : 212- 216: fkgwy LrNsS tlgwg FIMC_BORPE : 571- 574: ehqvm L-NlS iplyg FIMC_BORPE : 631- 634: saqya L-NgS wsgty FIMD_ECOLI : 462- 466: qsvrf LyNkS lnesg FIMD_ECOLI : 467- 470: lynks L-NeS gtniq FIMD_SALTY : 152- 155: fasmr L-NiS lpqas FIMD_SALTY : 161- 164: lpqas LlN-S argyi FIMD_SALTY : 162- 164: pqasl L-N-S argyi FIMD_SALTY : 182- 186: gipaa LiNyS ftgsr FOCD_ECOLI : 139- 141: dtcts L-N-S miqga FOCD_ECOLI : 461- 465: qsyrf LyNkS ltetg FOCD_ECOLI : 575- 578: disws L-NyS lsrna HFC1_HAEIN : 393- 395: tnhlt L-N-S sllyt HFC1_HAEIN : 393- 396: tnhlt L-NsS llytr HFC1_HAEIN : 544- 547: nsfhi L-NyS vnlsq HFC1_HAEIN : 644- 648: ysrds LkNrS tslgv HFC2_HAEIN : 393- 395: tnhlt L-N-S sllyt HFC2_HAEIN : 393- 396: tnhlt L-NsS llytr HFC2_HAEIN : 544- 547: nrfhi L-NyS inlsq HFC2_HAEIN : 644- 648: ysrds LkNrS tslga HFC3_HAEIN : 393- 395: tnhlt L-N-S sllyt HFC3_HAEIN : 393- 396: tnhlt L-NsS llytr HFC3_HAEIN : 544- 547: nsfhi L-NyS vnlsq HFC3_HAEIN : 644- 648: ysrds LkNrS islga HTRE_ECOLI : 415- 418: llglg L-NtS vgafs HTRE_ECOLI : 612- 615: kgnnq L-NvS ssgys LPFC_SALTY : 222- 226: lgawr LrNyS twtrn LPFC_SALTY : 611- 614: ledhn L-NyS vqegy MRKC_KLEPN : 568- 571: ddrvs L-NfS yplwf MRKC_KLEPN : 630- 633: qhdva L-NgS yrtpw MRKC_KLEPN : 641- 644: tpwtt L-NgS ysqge MYFC_YEREN : 5- 8: mffs LkN-S vakli MYFC_YEREN : 519- 522: fgyln L-NwS rqnyr PAPC_ECOLI : 613- 615: slnag L-N-S ggglt PAPC_ECOLI : 635- 639: shrsp LaNlS anias PEFC_SALTY : 482- 485: rfsqr LgN-S nlnla PEFC_SALTY : 522- 525: gvsvf L-NgS yskrp SEFC_SALEN : 188- 192: fgpwr LrNlS swqnl SEFC_SALEN : 601- 604: qkatf L-NaS wrgty YEHB_ECOLI : 254- 257: rdmqm LpN-S kqnft YHCD_ECOLI : 154- 158: ggtaa LlNyS lmssr YHCD_ECOLI : 155- 158: gtaal L-NyS lmssr YHCD_ECOLI : 229- 232: agevn LnN-S vlega YHCD_ECOLI : 229- 232: agevn L-NnS vlega YHCD_ECOLI : 460- 463: tyalg L-NwS nsilg YHCD_ECOLI : 579- 582: erets L-NgS issnl YPSE_YERPE : 97- 100: elspa LkN-S qtnpc YRAJ_ECOLI : 154- 157: fnhqq L-NlS ipqia YRAJ_ECOLI : 220- 224: fgpwr LrNyS twtrn YRAJ_ECOLI : 282- 285: sddnm LpN-S qrgfa YRAJ_ECOLI : 566- 569: drals L-NlS ipler YRAJ_ECOLI : 627- 630: nhnss L-NaS yrspy R 18: 11.5102 49( 24) L-x(1,2)-S-x(2,3)-N Occurences: 49(24) AGGC_ECOLI : 263- 268: frggm Lg-Sde-N mvpyn CAFA_YERPE : 533- 540: gmslt LnlSktqN inkyg CS32_ECOLI : 445- 452: ylsgs LirSelmN fnnki CS32_ECOLI : 879- 886: kistk LgsSndvN iqeit FAED_ECOLI : 462- 467: fdpte Lw-Sqs-N hgrrt FAED_ECOLI : 535- 542: gvsln LgwSgsrN srgen FAED_ECOLI : 694- 700: nlvvp Ln-SydwN tvtid FAND_ECOLI : 327- 332: tfian Ll-Spg-N ynydf FAND_ECOLI : 627- 633: dggvm Lt-SmssN svaiv FASD_ECOLI : 505- 511: ygsls LiaSqq-N ywtsd FASD_ECOLI : 524- 531: srsfs LshSfgwN diffs FIMC_BORPE : 201- 206: rldln Ly-Sgf-N fkgwy FIMC_BORPE : 554- 561: rvgvn LdvSrteN rrste FIMD_ECOLI : 114- 120: ltraq La-SmglN tasva FIMD_ECOLI : 211- 216: yayln Lq-Sgl-N igawr FIMD_ECOLI : 283- 288: frgaq La-Sdd-N mlpds FIMD_ECOLI : 467- 473: lynks LneSgt-N iqlvg FIMD_ECOLI : 577- 584: dinwt LsySltkN awqkg FIMD_SALTY : 202- 207: syfls Ll-Sgl-N ygpwr FIMD_SALTY : 272- 277: frgar Ly-Ssd-N mypds FIMD_SALTY : 535- 541: ygsly LsgSqq-N ywnta FOCD_ECOLI : 282- 287: frgiq La-Sdd-N mvpds FOCD_ECOLI : 575- 582: disws LnySlsrN awqhe HFC1_HAEIN : 442- 449: kngys LhgSysiN fneig HFC1_HAEIN : 504- 510: qfqvs LsqSlg-N wgnly HFC2_HAEIN : 442- 449: kngys LhgSysiN fneig HFC2_HAEIN : 504- 510: qfqvs LsqSlg-N wgnly HFC3_HAEIN : 191- 196: slyvg Lr-Sgv-N fgnwa HFC3_HAEIN : 442- 449: kngys LhgSysiN fnesg HFC3_HAEIN : 504- 510: qfqvs LsqSlg-N wgnly HTRE_ECOLI : 213- 220: lgawr LraSgnyN wmtds HTRE_ECOLI : 658- 665: spwgt LagSisaN sdnsr LPFC_SALTY : 211- 216: syyln Lr-Sgm-N lgawr LPFC_SALTY : 456- 462: qsyrf Ly-SksfN sgtdf LPFC_SALTY : 721- 727: etevs Lr-SdslN nqvdl MRKC_KLEPN : 606- 611: gvngs Ld-Sen-N lnygv MYFC_YEREN : 324- 329: eltdi Lp-Shs-N gdlhv MYFC_YEREN : 519- 525: fgyln LnwSrq-N yrdap PAPC_ECOLI : 17- 23: itcvi Ll-SlfcN aasav PAPC_ECOLI : 604- 610: tfndg Ld-SyslN aglns PEFC_SALTY : 247- 252: fygaa Lr-Sns-N mlpwe PEFC_SALTY : 482- 488: rfsqr LgnSnl-N lagwq SEFC_SALEN : 191- 196: wrlrn Ls-Swq-N lssek SEFC_SALEN : 780- 786: sgvqk LiaSwg-N kpsdt YEHB_ECOLI : 254- 260: rdmqm LpnSkq-N ftprv YHCD_ECOLI : 510- 516: nwqhq LsaSen-N eddgd YHCD_ECOLI : 579- 586: erets LngSissN lhytq YPSE_YERPE : 97- 103: elspa LknSqt-N pcvnl YRAJ_ECOLI : 275- 280: ftgvq La-Sdd-N mlpns S 19: 11.5102 48( 24) L-x(1,2)-S-x(1,2)-N Occurences: 48(24) AGGC_ECOLI : 263- 268: frggm Lg-SdeN mvpyn CAFA_YERPE : 383- 388: tlygg LqgSq-N yhaea CAFA_YERPE : 752- 757: rlflh LkrSd-N kpvpf CS32_ECOLI : 81- 86: egena LftSy-N fsedy CS32_ECOLI : 404- 408: hslge Lg-Sl-N fsgtw CS32_ECOLI : 766- 770: afltt Lq-Sn-N ewrth CS32_ECOLI : 879- 883: kistk Lg-Ss-N dvniq FAED_ECOLI : 462- 467: fdpte Lw-SqsN hgrrt FAND_ECOLI : 243- 247: fygvq Lr-Sn-N amtpe FAND_ECOLI : 327- 332: tfian Ll-SpgN ynydf FASD_ECOLI : 166- 171: lidyr LsgSk-N kynyg FASD_ECOLI : 250- 254: trgmi Le-Sf-N fkggk FASD_ECOLI : 439- 444: gqsyg LkySk-N kvdtg FASD_ECOLI : 505- 511: ygsls LiaSqqN ywtsd FIMC_BORPE : 201- 206: rldln Ly-SgfN fkgwy FIMD_ECOLI : 211- 216: yayln Lq-SglN igawr FIMD_ECOLI : 283- 288: frgaq La-SddN mlpds FIMD_ECOLI : 467- 473: lynks LneSgtN iqlvg FIMD_SALTY : 202- 207: syfls Ll-SglN ygpwr FIMD_SALTY : 272- 277: frgar LysSd-N mypds FIMD_SALTY : 272- 277: frgar Ly-SsdN mypds FIMD_SALTY : 535- 541: ygsly LsgSqqN ywnta FOCD_ECOLI : 282- 287: frgiq La-SddN mvpds HFC1_HAEIN : 504- 510: qfqvs LsqSlgN wgnly HFC1_HAEIN : 544- 549: nsfhi LnySv-N lsqsi HFC2_HAEIN : 504- 510: qfqvs LsqSlgN wgnly HFC2_HAEIN : 544- 549: nrfhi LnySi-N lsqsi HFC3_HAEIN : 191- 196: slyvg Lr-SgvN fgnwa HFC3_HAEIN : 504- 510: qfqvs LsqSlgN wgnly HFC3_HAEIN : 544- 549: nsfhi LnySv-N lsqsi HTRE_ECOLI : 213- 218: lgawr LraSg-N ynwmt LPFC_SALTY : 211- 216: syyln Lr-SgmN lgawr MRKC_KLEPN : 606- 610: gvngs Ld-Se-N nlnyg MRKC_KLEPN : 606- 611: gvngs Ld-SenN lnygv MYFC_YEREN : 324- 329: eltdi Lp-ShsN gdlhv MYFC_YEREN : 519- 525: fgyln LnwSrqN yrdap PAPC_ECOLI : 515- 519: ntsfn Lq-Se-N ikvav PEFC_SALTY : 160- 165: vpaar LkySa-N asqts PEFC_SALTY : 247- 252: fygaa Lr-SnsN mlpwe PEFC_SALTY : 482- 488: rfsqr LgnSnlN lagwq SEFC_SALEN : 191- 196: wrlrn Ls-SwqN lssek SEFC_SALEN : 483- 487: qalgs Lg-Sv-N lsyny SEFC_SALEN : 780- 786: sgvqk LiaSwgN kpsdt YEHB_ECOLI : 254- 260: rdmqm LpnSkqN ftprv YEHB_ECOLI : 523- 528: skdyq LsySn-N lrris YHCD_ECOLI : 62- 67: pgeys LivSv-N gekkg YHCD_ECOLI : 510- 515: nwqhq LsaSe-N neddg YHCD_ECOLI : 510- 516: nwqhq LsaSenN eddgd YPSE_YERPE : 97- 103: elspa LknSqtN pcvnl YRAJ_ECOLI : 275- 280: ftgvq La-SddN mlpns YRAJ_ECOLI : 327- 332: feind LypSs-N sgdle T 20: 11.5102 69( 24) G-x(0,1)-V-x(0,1)-V Occurences: 69(24) AGGC_ECOLI : 773- 776: tllpf GtV-V tlerk AGGC_ECOLI : 790- 792: afesa G-V-V ddkgk CAFA_YERPE : 733- 736: viptk GaV-V lakfn CS32_ECOLI : 22- 25: vlqdi G-VtV sgnqd CS32_ECOLI : 757- 759: vwxvi G-V-V kaflt FAED_ECOLI : 104- 107: wltka G-VyV sadyf FAED_ECOLI : 393- 395: qgasa G-V-V aglgy FAED_ECOLI : 637- 641: sggts GsVsV sgsvl FAED_ECOLI : 674- 677: vkdtp G-VkV tsgdg FAND_ECOLI : 277- 279: tvkqn G-V-V lhsel FAND_ECOLI : 391- 395: sigsl GaVsV sgnis FASD_ECOLI : 293- 296: vtikq GgV-V ilqkn FASD_ECOLI : 294- 296: tikqg G-V-V ilqkn FASD_ECOLI : 737- 740: ivpek GaV-V pvkyn FASD_ECOLI : 767- 770: tplpf GsV-V slvgs FIMC_BORPE : 301- 304: kvyqa G-VlV fqdav FIMC_BORPE : 548- 552: ystqv GrVgV nldvs FIMC_BORPE : 584- 586: gatss G-V-V tgsla FIMC_BORPE : 744- 747: vipra GaV-V alrfp FIMC_BORPE : 782- 785: vrdga GkV-V gvagq FIMD_ECOLI : 841- 845: gmpla GkVqV kwgee FIMD_SALTY : 424- 428: nlgdw GaVsV dvtha FIMD_SALTY : 687- 690: nwqls GgV-V ghadg FIMD_SALTY : 688- 690: wqlsg G-V-V ghadg FOCD_ECOLI : 781- 784: vvpth GaV-V radyk FOCD_ECOLI : 793- 796: yktrv G-VkV lmtlm FOCD_ECOLI : 810- 813: kavpf GsV-V tarng FOCD_ECOLI : 838- 842: gmpls GqVsV kwgsq HFC1_HAEIN : 243- 247: fallr GnVtV gdffs HFC1_HAEIN : 655- 658: slgvs GaV-V ahkyg HFC1_HAEIN : 781- 784: egafv GdV-V qggvl HFC2_HAEIN : 243- 247: fallr GnVtV gdffs HFC2_HAEIN : 655- 658: slgas GaV-V ahkyg HFC2_HAEIN : 781- 784: egafv GdV-V qggvl HFC3_HAEIN : 243- 247: fallr GnVtV gdffs HFC3_HAEIN : 655- 658: slgas GaV-V ahkhg HFC3_HAEIN : 781- 784: egafv GdV-V qggvl HTRE_ECOLI : 764- 767: avprq GsV-V fadfe LPFC_SALTY : 696- 700: hvinn GgVeV dwmgn LPFC_SALTY : 697- 700: vinng G-VeV dwmgn LPFC_SALTY : 833- 835: qqdnt G-V-V manav MRKC_KLEPN : 339- 343: vkegd GsVeV fsvpy MRKC_KLEPN : 668- 670: iahqh G-V-V fspet MRKC_KLEPN : 744- 747: vvpwe GsV-V kvsfd MRKC_KLEPN : 786- 788: sgkei G-V-V gqgsm MYFC_YEREN : 105- 108: qlsry G-VdV dnype PAPC_ECOLI : 546- 549: tavlq G-VaV glsas PAPC_ECOLI : 688- 692: dtdgv GgVpV dggqv PAPC_ECOLI : 689- 692: tdgvg G-VpV dggqv PAPC_ECOLI : 695- 698: vpvdg GqV-V tnrwg PAPC_ECOLI : 705- 707: nrwgt G-V-V tdiss PEFC_SALTY : 95- 98: wlkaa G-VpV rlegy PEFC_SALTY : 391- 395: gkyqa GgVsV tqalg PEFC_SALTY : 392- 395: kyqag G-VsV tqalg PEFC_SALTY : 517- 520: ttild G-VsV flngs SEFC_SALEN : 301- 304: qiadl G-VgV gvldv SEFC_SALEN : 303- 306: adlgv G-VgV ldvsi YEHB_ECOLI : 281- 284: tieqn GfV-V yqkev YEHB_ECOLI : 696- 698: ttnrn G-V-V iydgm YEHB_ECOLI : 736- 739: aapyr GaV-V lvnfd YEHB_ECOLI : 778- 780: hghni G-V-V gqgsq YHCD_ECOLI : 256- 259: qtsgs G-VqV tgian YHCD_ECOLI : 368- 372: wsamn GgViV aenyq YHCD_ECOLI : 369- 372: samng G-ViV aenyq YHCD_ECOLI : 556- 558: gtgvm G-V-V sdems YHCD_ECOLI : 747- 749: tsvdd G-V-V flnni YPSE_YERPE : 84- 87: qlsry G-VdV daype YRAJ_ECOLI : 657- 660: nygvt GgV-V ihphg YRAJ_ECOLI : 658- 660: ygvtg G-V-V ihphg Number of patterns evaluated by Pratt:4195 Total running time: 17 seconds