------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 44 sequences from file FIBRIN_AG_C_DOMAIN

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 44
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols               50
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename       FIBRIN_AG_C_DOMAIN.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
    FIB2_PETMA    641
    FIBA_PARPA    282
    FIBB_ANAPL     18
    FIBB_ANTAM     21
    FIBB_BISBO     21
    FIBB_BOVIN    468
    FIBB_BUBBU     21
    FIBB_CANFA     31
    FIBB_CEREL     21
    FIBB_CERSI     10
    FIBB_CHICK    463
    FIBB_ELEMA     20
    FIBB_ERYPA      9
    FIBB_FELCA     20
    FIBB_HORSE     19
    FIBB_HUMAN    491
    FIBB_HYLLA     13
    FIBB_LAMGL     19
    FIBB_MACFU      9
    FIBB_MANLE     14
    FIBB_MUNMU     21
    FIBB_ODOHE     21
    FIBB_PAPAN      9
    FIBB_PAPHA      9
    FIBB_PETMA    477
      FIBB_PIG     19
    FIBB_RABIT     13
    FIBB_RANTA     21
      FIBB_RAT    328
    FIBB_SHEEP     20
    FIBB_SYNCA     21
    FIBB_TAPTE     19
    FIBB_THEGE      9
    FIBB_VULVU     19
    FIBG_BOVIN    444
    FIBG_CANFA     24
    FIBG_HUMAN    437
    FIBG_PETMA    432
      FIBG_RAT    445
    FIBG_XENLA    438
    FIBH_HUMAN    453
    FIBL_HUMAN    820
    FIBX_MOUSE    432
     SCA_DROME    774

Pratt run started at Thu Feb  6 19:29:19 1997

No patterns found