------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file FATTY_ACID_DESATUR_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FATTY_ACID_DESATUR_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACO1_MOUSE 355 ACO1_YEAST 510 ACO2_MOUSE 358 ACOD_RAT 358 Pratt run started at Thu Feb 6 19:27:48 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 81.9010 4( 4) A-x(1,2)-G-x(0,2)-I-T-A-G-x-H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 2: 77.7310 4( 4) W-x(3)-H-R-x-H-H-x(4)-T-x(2)-D-P-x(3)-R-R-G-x(3)-S-H-x-G-W-x(0,1)-L-L-x(2,4)-K-x(2)-A 3: 75.0609 4( 4) I-T-A-G-x-H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 4: 73.5609 4( 4) H-R-x-H-H-x(4)-T-x(2)-D-P-x(3)-R-R-G-x(3)-S-H-x-G-W-x(0,1)-L-L-x(2,4)-K-x(2)-A 5: 70.8909 4( 4) T-A-G-x-H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 6: 69.3909 4( 4) R-x-H-H-x(4)-T-x(2)-D-P-x(3)-R-R-G-x(3)-S-H-x-G-W-x(0,1)-L-L-x(2,4)-K-x(2)-A 7: 65.7208 4( 4) G-x(3,5)-G-x-H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 8: 65.2208 5( 4) G-x(4,5)-A-x(0,2)-H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 9: 65.2208 4( 4) G-x(3,4)-A-x(0,2)-H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 10: 64.7208 4( 4) I-T-A-G-x-H-R-L-W-S-H-R-x-Y-x-A-x(1,3)-L-x-L-x(1,3)-I 11: 64.7208 4( 4) G-x(0,2)-I-T-A-G-x-H-R-L-W-S-H-R-x-Y-x-A-x(1,3)-L-x-L 12: 62.5508 4( 4) G-x-H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 13: 61.0508 4( 4) H-x(4)-T-x(2)-D-P-x(3)-R-R-G-x(3)-S-H-x-G-W-x(0,1)-L-L-x(2,4)-K-x(2)-A 14: 61.0508 4( 4) H-x(5)-T-x(2)-D-P-x(3)-R-R-G-x(3)-S-H-x-G-W-x(0,1)-L-L-x(2,4)-K-x(2)-A 15: 60.5508 4( 4) T-A-G-x-H-R-L-W-S-H-R-x-Y-x-A-x(1,3)-L-x-L-x(1,3)-I 16: 58.3807 4( 4) H-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 17: 58.3807 4( 4) A-x(3)-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 18: 57.8807 4( 4) A-x(2,3)-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I 19: 57.3807 4( 4) F-x-R-x(2,3)-V-x(2,3)-A-T-x(3)-N-S-x-A-H-x(2)-G-x(2)-P-x-D-x(5)-R-x-N 20: 57.3807 7( 4) A-x(1,3)-R-L-W-S-H-R-x-Y-x-A-x(2)-P-L-R-x-F-x(2)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 149.6679 4( 4) T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY] B 2: 147.6738 4( 4) H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T C 3: 147.4053 4( 4) I-T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H D 4: 144.5032 4( 4) G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST] E 5: 143.0038 4( 4) A-x(2,3)-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE] F 6: 142.5038 7( 4) A-x(1,3)-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE] G 7: 140.3332 4( 4) A-x(3)-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST] H 8: 139.0165 4( 4) W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG] I 9: 138.4433 4( 4) A-x(1,2)-G-x(0,2)-I-T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H J 10: 137.5652 4( 4) G-x(3,4)-A-x(0,2)-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H K 11: 133.8951 4( 4) G-x(3,5)-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H L 12: 133.3951 5( 4) G-x(4,5)-A-x(0,2)-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H M 13: 130.4491 4( 4) F-[IL]-R-x(2,3)-V-x(2,3)-A-T-[FW]-x-[IV]-N-S-x-A-H-x(2)-G-x-[QR]-P-[FY]-D-[DK]-[NR]-x-[QST]-[PS]-R-[DE]-N-x-[IL]-[TV]-[AS]-[ILM]-[GV]-[AST]-[FV]-G-E-x-[FY]-H-N N 14: 129.4717 4( 4) H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D O 15: 128.4806 4( 4) R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D-x(2)-[DT] P 16: 127.5535 4( 4) H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D-x(2)-[DT]-[IL]-[KR] Q 17: 123.3834 4( 4) H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D-x(2)-[DT]-[IL]-[KR] R 18: 122.7460 4( 4) G-x(0,2)-I-T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-x(1,3)-L-x-L-x(3)-[IL]-x-[GI]-[AC]-[AN]-[ST]-[MV]-[AE]-x-[QS]-[AN]-[DK]-x-[WY]-[DEG]-[HW]-[AS]-[HR]-[DR]-x-[HR] S 19: 122.0633 4( 4) W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K T 20: 115.2232 3( 3) W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 149.6679 4( 4) T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY] Occurences: 4(4) ACO1_MOUSE : 112- 159: salgi TAGaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHHKF setha ACO1_YEAST : 157- 204: ggvsi TAGyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHHRY tdtlr ACO2_MOUSE : 115- 162: salgi TAGaHRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHHKF setha ACOD_RAT : 115- 162: salgi TAGaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHHKF setha B 2: 147.6738 4( 4) H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T Occurences: 4(4) ACO1_MOUSE : 116- 162: itaga HRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHHKFSET hadph ACO1_YEAST : 161- 207: itagy HRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHHRYTDT lrdpy ACO2_MOUSE : 119- 165: itaga HRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHHKFSET hadph ACOD_RAT : 119- 165: itaga HRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHHKFSET hadph C 3: 147.4053 4( 4) I-T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H Occurences: 4(4) ACO1_MOUSE : 111- 157: tsalg ITAGaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHH kfset ACO1_YEAST : 156- 202: vggvs ITAGyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHH rytdt ACO2_MOUSE : 114- 160: isalg ITAGaHRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHH kfset ACOD_RAT : 114- 160: isalg ITAGaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHH kfset D 4: 144.5032 4( 4) G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST] Occurences: 4(4) ACO1_MOUSE : 114- 160: lgita GaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHHKFS ethad ACO1_YEAST : 159- 205: vsita GyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHHRYT dtlrd ACO2_MOUSE : 117- 163: lgita GaHRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHHKFS ethad ACOD_RAT : 117- 163: lgita GaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHHKFS ethad E 5: 143.0038 4( 4) A-x(2,3)-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE] Occurences: 4(4) ACO1_MOUSE : 113- 161: algit AgahRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHHKFSE thadp ACO1_YEAST : 158- 206: gvsit AgyhRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHHRYTD tlrdp ACO2_MOUSE : 116- 164: algit AgahRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHHKFSE thadp ACOD_RAT : 116- 164: algit AgahRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHHKFSE thadp F 6: 142.5038 7( 4) A-x(1,3)-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE] Occurences: 7(4) ACO1_MOUSE : 113- 161: algit AgahRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHHKFSE thadp ACO1_MOUSE : 115- 161: gitag Ah--RLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHHKFSE thadp ACO1_YEAST : 158- 206: gvsit AgyhRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHHRYTD tlrdp ACO2_MOUSE : 116- 164: algit AgahRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHHKFSE thadp ACO2_MOUSE : 118- 164: gitag Ah--RLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHHKFSE thadp ACOD_RAT : 116- 164: algit AgahRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHHKFSE thadp ACOD_RAT : 118- 164: gitag Ah--RLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHHKFSE thadp G 7: 140.3332 4( 4) A-x(3)-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST] Occurences: 4(4) ACO1_MOUSE : 113- 160: algit AgahRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHHKFS ethad ACO1_YEAST : 158- 205: gvsit AgyhRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHHRYT dtlrd ACO2_MOUSE : 116- 163: algit AgahRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHHKFS ethad ACOD_RAT : 116- 163: algit AgahRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHHKFS ethad H 8: 139.0165 4( 4) W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG] Occurences: 4(4) ACO1_MOUSE : 149- 194: ndvyd WARDHRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGG kldms ACO1_YEAST : 194- 242: gsakw WGHSHRIHHRYTDTlrDPYDARRGLWYSHMGWmLLkpnpKYkAraDiTD mtddw ACO2_MOUSE : 152- 197: ndvye WARDHRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGG kldms ACOD_RAT : 152- 197: ndvye WARDHRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGG kldms I 9: 138.4433 4( 4) A-x(1,2)-G-x(0,2)-I-T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H Occurences: 4(4) ACO1_MOUSE : 108- 153: yymts Al-G--ITAGaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDH rahhk ACO1_YEAST : 150- 198: svfyy AvgGvsITAGyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSH rihhr ACO2_MOUSE : 111- 156: yyvis Al-G--ITAGaHRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDH rahhk ACOD_RAT : 111- 156: yylis Al-G--ITAGaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDH rahhk J 10: 137.5652 4( 4) G-x(3,4)-A-x(0,2)-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H-H Occurences: 4(4) ACO1_MOUSE : 110- 157: mtsal GitagA--HRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAHH kfset ACO1_YEAST : 153- 202: yyavg GvsitAgyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIHH rytdt ACO2_MOUSE : 113- 160: visal GitagA--HRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAHH kfset ACOD_RAT : 113- 160: lisal GitagA--HRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAHH kfset K 11: 133.8951 4( 4) G-x(3,5)-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H Occurences: 4(4) ACO1_MOUSE : 110- 156: mtsal Gita--GaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAH hkfse ACO1_YEAST : 153- 201: yyavg GvsitaGyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIH hrytd ACO2_MOUSE : 113- 159: visal Gita--GaHRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAH hkfse ACOD_RAT : 113- 159: lisal Gita--GaHRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAH hkfse L 12: 133.3951 5( 4) G-x(4,5)-A-x(0,2)-H-R-L-W-S-H-R-[ST]-Y-x-A-[HR]-x-P-L-R-[IL]-F-x-[AI]-I-x-[GN]-[CT]-x-[AS]-[FV]-[EQ]-[GN]-[DS]-[AV]-x(2)-W-[AG]-[HR]-[DS]-H-R-[AI]-H Occurences: 5(4) ACO1_MOUSE : 110- 156: mtsal Gitag-A--HRLWSHRTYkARlPLRIFlIIaNTmAFQNDVydWARDHRAH hkfse ACO1_YEAST : 152- 201: fyyav GgvsitAgyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIH hrytd ACO1_YEAST : 153- 201: yyavg Gvsit-AgyHRLWSHRSYsAHwPLRLFyAIfGCaSVEGSAkwWGHSHRIH hrytd ACO2_MOUSE : 113- 159: visal Gitag-A--HRLWSHRTYkARlPLRLFlIIaNTmAFQNDVyeWARDHRAH hkfse ACOD_RAT : 113- 159: lisal Gitag-A--HRLWSHRTYkARlPLRIFlIIaNTmAFQNDVyeWARDHRAH hkfse M 13: 130.4491 4( 4) F-[IL]-R-x(2,3)-V-x(2,3)-A-T-[FW]-x-[IV]-N-S-x-A-H-x(2)-G-x-[QR]-P-[FY]-D-[DK]-[NR]-x-[QST]-[PS]-R-[DE]-N-x-[IL]-[TV]-[AS]-[ILM]-[GV]-[AST]-[FV]-G-E-x-[FY]-H-N Occurences: 4(4) ACO1_MOUSE : 247- 295: lfvst FLRytlVln-ATWlVNSaAHlyGyRPYDKNiQSRENiLVSLGAVGEgFHN yhhtf ACO1_YEAST : 288- 336: liyag FIRvf-ViqqATFcINSmAHyiGtQPFDDRrTPRDNwITAIVTFGEgYHN fhhef ACO2_MOUSE : 250- 298: lcvst FLRyavVln-ATWlVNSaAHlyGyRPYDKNiSSRENiLVSMGAVGErFHN yhhaf ACO2_MOUSE : 250- 298: lcvst FLRya-VvlnATWlVNSaAHlyGyRPYDKNiSSRENiLVSMGAVGErFHN yhhaf ACOD_RAT : 250- 298: lfvst FLRytlVln-ATWlVNSaAHlyGyRPYDKNiQSRENiLVSLGSVGEgFHN yhhaf N 14: 129.4717 4( 4) H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D Occurences: 4(4) ACO1_MOUSE : 153- 197: dward HRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklD msdlk ACO1_YEAST : 198- 245: wwghs HRIHHRYTDTlrDPYDARRGLWYSHMGWmLLkpnpKYkAraDiTDmtD dwtir ACO2_MOUSE : 156- 200: eward HRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklD msdlk ACOD_RAT : 156- 200: eward HRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklD msdlk O 15: 128.4806 4( 4) R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D-x(2)-[DT] Occurences: 4(4) ACO1_MOUSE : 154- 200: wardh RAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsD lkaek ACO1_YEAST : 199- 248: wghsh RIHHRYTDTlrDPYDARRGLWYSHMGWmLLkpnpKYkAraDiTDmtDdwT irfqh ACO2_MOUSE : 157- 203: wardh RAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsD lkaek ACOD_RAT : 157- 203: wardh RAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsD lkaek P 16: 127.5535 4( 4) H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D-x(2)-[DT]-[IL]-[KR] Occurences: 4(4) ACO1_MOUSE : 156- 202: rdhra HHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsDLK aeklv ACO1_YEAST : 201- 250: hshri HHRYTDTlrDPYDARRGLWYSHMGWmLLkpnpKYkAraDiTDmtDdwTIR fqhrh ACO2_MOUSE : 159- 205: rdhra HHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsDLK aeklv ACOD_RAT : 159- 205: rdhra HHKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsDLK aeklv Q 17: 123.3834 4( 4) H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K-[HY]-x-A-x(2)-[DE]-x-[GT]-[DG]-x(2)-D-x(2)-[DT]-[IL]-[KR] Occurences: 4(4) ACO1_MOUSE : 157- 202: dhrah HKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsDLK aeklv ACO1_YEAST : 202- 250: shrih HRYTDTlrDPYDARRGLWYSHMGWmLLkpnpKYkAraDiTDmtDdwTIR fqhrh ACO2_MOUSE : 160- 205: dhrah HKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsDLK aeklv ACOD_RAT : 160- 205: dhrah HKFSEThaDPHNSRRGFFFSHVGW-LLvr--KHpAvkEkGGklDmsDLK aeklv R 18: 122.7460 4( 4) G-x(0,2)-I-T-A-G-x-H-R-L-W-S-H-R-[ST]-Y-x-A-x(1,3)-L-x-L-x(3)-[IL]-x-[GI]-[AC]-[AN]-[ST]-[MV]-[AE]-x-[QS]-[AN]-[DK]-x-[WY]-[DEG]-[HW]-[AS]-[HR]-[DR]-x-[HR] Occurences: 4(4) ACO1_MOUSE : 110- 154: mtsal G--ITAGaHRLWSHRTYkAr--LpLrifLiIANTMAfQNDvYDWARDhR ahhkf ACO1_YEAST : 153- 201: yyavg GvsITAGyHRLWSHRSYsAhwpLrLfyaIfGCASVEgSAKwWGHSHRiH hrytd ACO2_MOUSE : 113- 157: visal G--ITAGaHRLWSHRTYkAr--LpLrlfLiIANTMAfQNDvYEWARDhR ahhkf ACOD_RAT : 113- 157: lisal G--ITAGaHRLWSHRTYkAr--LpLrifLiIANTMAfQNDvYEWARDhR ahhkf S 19: 122.0633 4( 4) W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-x(0,1)-L-L-x(2,4)-K Occurences: 4(4) ACO1_MOUSE : 149- 185: ndvyd WARDHRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--K hpavk ACO1_YEAST : 194- 233: gsakw WGHSHRIHHRYTDTlrDPYDARRGLWYSHMGWmLLkpnpK ykara ACO2_MOUSE : 152- 188: ndvye WARDHRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--K hpavk ACOD_RAT : 152- 188: ndvye WARDHRAHHKFSEThaDPHNSRRGFFFSHVGW-LLvr--K hpavk T 20: 115.2232 3( 3) W-[AG]-[HR]-[DS]-H-R-[AI]-H-H-[KR]-[FY]-[ST]-[DE]-T-x(2)-D-P-[HY]-[DN]-[AS]-R-R-G-[FL]-[FW]-[FY]-S-H-[MV]-G-W-L Occurences: 3(3) ACO1_MOUSE : 149- 181: ndvyd WARDHRAHHKFSEThaDPHNSRRGFFFSHVGWL lvrkh ACO2_MOUSE : 152- 184: ndvye WARDHRAHHKFSEThaDPHNSRRGFFFSHVGWL lvrkh ACOD_RAT : 152- 184: ndvye WARDHRAHHKFSEThaDPHNSRRGFFFSHVGWL lvrkh Number of patterns evaluated by Pratt:28646 Total running time: 8 seconds