------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file FAD_G3PDH_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename FAD_G3PDH_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GLPA_ECOLI 542 GLPA_HAEIN 563 GLPD_BACSU 555 GLPD_ECOLI 501 GLPD_STRPN 138 GPDM_HUMAN 727 GPDM_RAT 727 GPDM_YEAST 649 Pratt run started at Thu Feb 6 19:27:40 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 9( 8) G-x-R-P-L 2: 16.1802 12( 8) G-x(3)-T-x(0,1)-Y-x(4)-E 3: 15.6802 8( 8) G-G-x(2)-G-x(3,5)-D 4: 15.1802 8( 8) D-x(2,4)-G-G-x(2,3)-G 5: 15.1802 8( 8) D-x(2,4)-G-x(0,1)-G-x(2)-G 6: 15.1802 8( 8) G-x(2,3)-A-x-D-x(2,4)-G 7: 15.1802 8( 8) G-x(1,2)-A-x-D-x(2,4)-G 8: 15.1802 10( 8) A-x(0,1)-G-x(1,3)-A-x-D 9: 15.1802 11( 8) A-x(0,2)-G-x(0,1)-R-x-L 10: 15.1802 10( 8) V-x(3,4)-G-x(1,3)-G-x-G 11: 14.6802 9( 8) A-G-x(0,2)-R-x(1,3)-L 12: 12.5102 9( 8) R-P-L 13: 12.5102 8( 8) E-x(2)-D-x(3)-G 14: 12.5102 8( 8) G-T-T 15: 12.0102 11( 8) T-x(4,5)-L-D 16: 12.0102 14( 8) L-x(5)-E-x(2,3)-D 17: 12.0102 9( 8) E-x(3,4)-A-x(3)-L 18: 12.0102 12( 8) E-x(2,3)-L-x-K 19: 12.0102 9( 8) E-x(2)-D-x(4,5)-T 20: 12.0102 8( 8) G-x(1,2)-R-x(4)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 67.9401 8( 8) G-G-x-[NT]-G-x(3,5)-D-x-[ASV]-x-[DR]-[GN]-[ILM]-x-[ACTV]-x-[LMV]-x-[ES]-x(2)-[DS]-x-[AES]-x-[AGT]-x-[EST]-[DGS]-x-[ENS]-x(2)-[LMV]-x-[HK]-x-[EG]-x-[RS] B 2: 57.3483 8( 8) G-x(2,3)-A-x-D-x(2,4)-G-x(2)-[CNTV]-[AGIL]-x(2)-[ER]-x(2)-[DS]-[FIL]-[ADS]-[ACNST]-[AGL]-x-[AST]-[GST]-x-[ENS]-x(2)-[LM]-x-[HK]-[EGS]-x(2)-R C 3: 57.3483 8( 8) G-x(1,2)-A-x-D-x(2,4)-G-x(2)-[CNTV]-[AGIL]-x(2)-[ER]-x(2)-[DS]-[FIL]-[ADS]-[ACNST]-[AGL]-x-[AST]-[GST]-x-[ENS]-x(2)-[LM]-x-[HK]-[EGS]-x(2)-R D 4: 46.3364 10( 8) A-x(0,1)-G-x(1,3)-A-x-D-x-[ANV]-x(2)-[GN]-x(2)-[CTV]-[AIL]-x(2)-E-x(2)-D-x(3)-[AG]-[AT]-[STV]-[EGS] E 5: 38.9129 8( 8) D-x(2,4)-G-x(0,1)-G-x-[NT]-G-[ACST]-[GI]-x-[AD]-x-[DS]-x-[ADV]-x(2)-[GI]-x(2)-[CTV] F 6: 35.7185 8( 8) D-x(2,4)-G-G-x(2,3)-G-[ACST]-[GI]-x-[AD]-x-[DS]-x-[ADV]-x(2)-[GI]-x(2)-[CTV] G 7: 25.9374 8( 8) G-[ILV]-R-P-L-x(2)-[DEGS]-[DENP]-x(3)-[DNPS] H 8: 21.9754 12( 8) G-x(3)-T-x(0,1)-Y-x(3)-[AL]-E-x-[APT] I 9: 18.7964 8( 8) R-P-L-x(2)-[DEGNS]-[DENP]-x(3)-[DNPS] J 10: 18.4044 11( 8) A-x(0,2)-G-x(0,1)-R-[GP]-L K 11: 17.2297 8( 8) E-x(2)-D-x(4,5)-T-[GSV]-[ERS] L 12: 16.8397 8( 8) V-x(3,4)-G-x(1,3)-G-[ACDGST]-G M 13: 15.7078 8( 8) G-T-T-[DS] N 14: 14.6802 9( 8) A-G-x(0,2)-R-x(1,3)-L O 15: 14.2528 8( 8) G-x(1,2)-R-x(2)-[ACSV]-x-D P 16: 13.8896 9( 8) E-x(3,4)-A-x(3)-L-x(2)-[DENRS] Q 17: 12.5102 8( 8) E-x(2)-D-x(3)-G R 18: 12.5102 8( 8) G-T-T S 19: 12.0102 12( 8) G-x(3)-T-x(0,1)-Y T 20: 12.0102 11( 8) T-x(4,5)-L-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 67.9401 8( 8) G-G-x-[NT]-G-x(3,5)-D-x-[ASV]-x-[DR]-[GN]-[ILM]-x-[ACTV]-x-[LMV]-x-[ES]-x(2)-[DS]-x-[AES]-x-[AGT]-x-[EST]-[DGS]-x-[ENS]-x(2)-[LMV]-x-[HK]-x-[EG]-x-[RS] Occurences: 8(8) GLPA_ECOLI : 16- 59: viiig GGaTGagiarDcAlRGLrViLvErhDiAtGaTGrNhgLlHsGaR yavtd GLPA_HAEIN : 26- 69: viiig GGaTGagiarDcAlRGIdCiLlErrDiAtGaTGrNhgLlHsGaR yavnd GLPD_BACSU : 30- 73: lfiig GGiTGagtalDaAsRGMkVaLsEmqDfAaGtSSrStkLvHgGlR ylkqf GLPD_ECOLI : 11- 54: livig GGiNGagiaaDaAgRGLsVlMlEaqDlAcAtSSaSskLiHgGlR ylehy GLPD_STRPN : 90- 131: asdyn GGnNGtir--DeSfDNLiAtVeSylSkEkTrEDvEsaVsKlEsS tsekh GPDM_HUMAN : 77- 120: ilvig GGaTGsgcalDaVtRGLkTaLvErdDfSsGtSSrStkLiHgGvR ylqka GPDM_RAT : 77- 120: ilvig GGaTGcgcalDaVtRGLkTaLvErnDfAsGtSSrStkLiHgGvR ylqka GPDM_YEAST : 75- 118: vliig GGaTGtgcalDaAtRGLnVaLvEkgDfAsGtSSkStkMiHgGvR yleka B 2: 57.3483 8( 8) G-x(2,3)-A-x-D-x(2,4)-G-x(2)-[CNTV]-[AGIL]-x(2)-[ER]-x(2)-[DS]-[FIL]-[ADS]-[ACNST]-[AGL]-x-[AST]-[GST]-x-[ENS]-x(2)-[LM]-x-[HK]-[EGS]-x(2)-R Occurences: 8(8) GLPA_ECOLI : 20- 59: gggat GagiArDcalrGlrVIlvErhDIATGaTGrNhgLlHSgaR yavtd GLPA_HAEIN : 30- 69: gggat GagiArDcalrGidCIllErrDIATGaTGrNhgLlHSgaR yavnd GLPD_BACSU : 34- 73: gggit GagtAlDaasrGmkVAlsEmqDFAAGtSSrStkLvHGglR ylkqf GLPD_ECOLI : 15- 54: gggin GagiAaDaagrGlsVLmlEaqDLACAtSSaSskLiHGglR ylehy GLPD_STRPN : 82- 118: rplia Gns-AsDyn--GgnNGtiRdeSFDNLiATvEsyLsKEktR edves GPDM_HUMAN : 81- 120: gggat GsgcAlDavtrGlkTAlvErdDFSSGtSSrStkLiHGgvR ylqka GPDM_RAT : 81- 120: gggat GcgcAlDavtrGlkTAlvErnDFASGtSSrStkLiHGgvR ylqka GPDM_YEAST : 79- 118: gggat GtgcAlDaatrGlnVAlvEkgDFASGtSSkStkMiHGgvR yleka C 3: 57.3483 8( 8) G-x(1,2)-A-x-D-x(2,4)-G-x(2)-[CNTV]-[AGIL]-x(2)-[ER]-x(2)-[DS]-[FIL]-[ADS]-[ACNST]-[AGL]-x-[AST]-[GST]-x-[ENS]-x(2)-[LM]-x-[HK]-[EGS]-x(2)-R Occurences: 8(8) GLPA_ECOLI : 22- 59: gatga Gi-ArDcalrGlrVIlvErhDIATGaTGrNhgLlHSgaR yavtd GLPA_HAEIN : 32- 69: gatga Gi-ArDcalrGidCIllErrDIATGaTGrNhgLlHSgaR yavnd GLPD_BACSU : 36- 73: gitga Gt-AlDaasrGmkVAlsEmqDFAAGtSSrStkLvHGglR ylkqf GLPD_ECOLI : 17- 54: ginga Gi-AaDaagrGlsVLmlEaqDLACAtSSaSskLiHGglR ylehy GLPD_STRPN : 82- 118: rplia GnsAsDyn--GgnNGtiRdeSFDNLiATvEsyLsKEktR edves GPDM_HUMAN : 83- 120: gatgs Gc-AlDavtrGlkTAlvErdDFSSGtSSrStkLiHGgvR ylqka GPDM_RAT : 83- 120: gatgc Gc-AlDavtrGlkTAlvErnDFASGtSSrStkLiHGgvR ylqka GPDM_YEAST : 81- 118: gatgt Gc-AlDaatrGlnVAlvEkgDFASGtSSkStkMiHGgvR yleka D 4: 46.3364 10( 8) A-x(0,1)-G-x(1,3)-A-x-D-x-[ANV]-x(2)-[GN]-x(2)-[CTV]-[AIL]-x(2)-E-x(2)-D-x(3)-[AG]-[AT]-[STV]-[EGS] Occurences: 10(8) GLPA_ECOLI : 18- 48: iiggg AtGagiArDcAlrGlrVIlvErhDiatGATG rnhgl GLPA_ECOLI : 21- 48: ggatg A-Gi--ArDcAlrGlrVIlvErhDiatGATG rnhgl GLPA_HAEIN : 28- 58: iiggg AtGagiArDcAlrGidCIllErrDiatGATG rnhgl GLPA_HAEIN : 31- 58: ggatg A-Gi--ArDcAlrGidCIllErrDiatGATG rnhgl GLPD_BACSU : 35- 62: ggitg A-Gt--AlDaAsrGmkVAlsEmqDfaaGTSS rstkl GLPD_ECOLI : 16- 43: gging A-Gi--AaDaAgrGlsVLmlEaqDlacATSS asskl GLPD_STRPN : 81- 109: lrpli A-Gns-AsDyNggNngTIrdEsfDnliATVE sylsk GPDM_HUMAN : 79- 109: viggg AtGsgcAlDaVtrGlkTAlvErdDfssGTSS rstkl GPDM_RAT : 79- 109: viggg AtGcgcAlDaVtrGlkTAlvErnDfasGTSS rstkl GPDM_YEAST : 77- 107: iiggg AtGtgcAlDaAtrGlnVAlvEkgDfasGTSS kstkm E 5: 38.9129 8( 8) D-x(2,4)-G-x(0,1)-G-x-[NT]-G-[ACST]-[GI]-x-[AD]-x-[DS]-x-[ADV]-x(2)-[GI]-x(2)-[CTV] Occurences: 8(8) GLPA_ECOLI : 10- 34: dsqss DviiiGgGaTGAGiArDcAlrGlrV ilver GLPA_HAEIN : 20- 44: sslst DviiiGgGaTGAGiArDcAlrGidC iller GLPD_BACSU : 24- 48: tkkty DlfiiGgGiTGAGtAlDaAsrGmkV alsem GLPD_ECOLI : 5- 29: metk DliviGgGiNGAGiAaDaAgrGlsV lmlea GLPD_STRPN : 87- 108: gnsas Dyn--G-GnNGTIrDeSfDnlIatV esyls GPDM_HUMAN : 71- 95: ntsef DilviGgGaTGSGcAlDaVtrGlkT alver GPDM_RAT : 71- 95: ntsef DilviGgGaTGCGcAlDaVtrGlkT alver GPDM_YEAST : 69- 93: kthqf DvliiGgGaTGTGcAlDaAtrGlnV alvek F 6: 35.7185 8( 8) D-x(2,4)-G-G-x(2,3)-G-[ACST]-[GI]-x-[AD]-x-[DS]-x-[ADV]-x(2)-[GI]-x(2)-[CTV] Occurences: 8(8) GLPA_ECOLI : 10- 34: dsqss DviiiGGgatGAGiArDcAlrGlrV ilver GLPA_HAEIN : 20- 44: sslst DviiiGGgatGAGiArDcAlrGidC iller GLPD_BACSU : 24- 48: tkkty DlfiiGGgitGAGtAlDaAsrGmkV alsem GLPD_ECOLI : 5- 29: metk DliviGGginGAGiAaDaAgrGlsV lmlea GLPD_STRPN : 87- 108: gnsas Dyn--GGnn-GTIrDeSfDnlIatV esyls GPDM_HUMAN : 71- 95: ntsef DilviGGgatGSGcAlDaVtrGlkT alver GPDM_RAT : 71- 95: ntsef DilviGGgatGCGcAlDaVtrGlkT alver GPDM_YEAST : 69- 93: kthqf DvliiGGgatGTGcAlDaAtrGlnV alvek G 7: 25.9374 8( 8) G-[ILV]-R-P-L-x(2)-[DEGS]-[DENP]-x(3)-[DNPS] Occurences: 8(8) GLPA_ECOLI : 313- 325: lrays GVRPLvaSDddpS grnls GLPA_HAEIN : 323- 335: lraya GVRPLvaSDddpS grnvs GLPD_BACSU : 341- 353: esswa GLRPLihEEgkdP seisr GLPD_ECOLI : 315- 327: vwtys GVRPLcdDEsdsP qaitr GLPD_STRPN : 75- 87: esswa GLRPLiaGNsasD ynggn GPDM_HUMAN : 400- 412: laaws GIRPLvtDPksaD tqsis GPDM_RAT : 400- 412: laaws GIRPLvtDPksaN tqsis GPDM_YEAST : 417- 429: lsawa GVRPLvrDPrtiP adgkk H 8: 21.9754 12( 8) G-x(3)-T-x(0,1)-Y-x(3)-[AL]-E-x-[APT] Occurences: 12(8) GLPA_ECOLI : 353- 365: ititg GklmT-YrlmAEwA tdavc GLPA_HAEIN : 363- 375: ititg GklmT-YrlmAEwA tdlvc GLPD_BACSU : 294- 307: gktyv GttdTvYkeaLEhP rmtte GLPD_ECOLI : 352- 365: llsvf GgklTtYrklAEhA leklt GLPD_ECOLI : 353- 365: lsvfg GkltT-YrklAEhA leklt GLPD_STRPN : 28- 41: nktyf GttdTdYtgdLEhP kvtqe GPDM_HUMAN : 434- 447: litia GgkwTtYrsmAEdT inaav GPDM_HUMAN : 435- 447: itiag GkwtT-YrsmAEdT inaav GPDM_RAT : 434- 447: litia GgkwTtYrsmAEdT vnkav GPDM_RAT : 435- 447: itiag GkwtT-YrsmAEdT vnkav GPDM_YEAST : 459- 472: litia GgkwTtYrqmAEeT vdkvv GPDM_YEAST : 460- 472: itiag GkwtT-YrqmAEeT vdkvv I 9: 18.7964 8( 8) R-P-L-x(2)-[DEGNS]-[DENP]-x(3)-[DNPS] Occurences: 8(8) GLPA_ECOLI : 315- 325: aysgv RPLvaSDddpS grnls GLPA_HAEIN : 325- 335: ayagv RPLvaSDddpS grnvs GLPD_BACSU : 343- 353: swagl RPLihEEgkdP seisr GLPD_ECOLI : 317- 327: tysgv RPLcdDEsdsP qaitr GLPD_STRPN : 77- 87: swagl RPLiaGNsasD ynggn GPDM_HUMAN : 402- 412: awsgi RPLvtDPksaD tqsis GPDM_RAT : 402- 412: awsgi RPLvtDPksaN tqsis GPDM_YEAST : 419- 429: awagv RPLvrDPrtiP adgkk J 10: 18.4044 11( 8) A-x(0,2)-G-x(0,1)-R-[GP]-L Occurences: 11(8) GLPA_ECOLI : 310- 317: trilr AysGvRPL vasdd GLPA_HAEIN : 320- 327: trvlr AyaGvRPL vasdd GLPA_HAEIN : 322- 327: vlray A--GvRPL vasdd GLPD_BACSU : 340- 345: iessw A--GlRPL iheeg GLPD_ECOLI : 22- 27: giaad Aa-G-RGL svlml GLPD_ECOLI : 23- 27: iaada A--G-RGL svlml GLPD_STRPN : 74- 79: iessw A--GlRPL iagns GPDM_HUMAN : 397- 404: gdvla AwsGiRPL vtdpk GPDM_RAT : 397- 404: gdvla AwsGiRPL vtdpk GPDM_YEAST : 414- 421: edvls AwaGvRPL vrdpr GPDM_YEAST : 416- 421: vlsaw A--GvRPL vrdpr K 11: 17.2297 8( 8) E-x(2)-D-x(4,5)-T-[GSV]-[ERS] Occurences: 8(8) GLPA_ECOLI : 38- 49: rvilv ErhDiatgaTGR nhgll GLPA_HAEIN : 48- 59: dcill ErrDiatgaTGR nhgll GLPD_BACSU : 52- 62: kvals EmqDfaag-TSS rstkl GLPD_ECOLI : 33- 43: svlml EaqDlaca-TSS asskl GLPD_STRPN : 99- 109: gtird EsfDnlia-TVE sylsk GPDM_HUMAN : 99- 109: ktalv ErdDfssg-TSS rstkl GPDM_RAT : 99- 109: ktalv ErnDfasg-TSS rstkl GPDM_YEAST : 97- 107: nvalv EkgDfasg-TSS kstkm L 12: 16.8397 8( 8) V-x(3,4)-G-x(1,3)-G-[ACDGST]-G Occurences: 8(8) GLPA_ECOLI : 11- 22: sqssd ViiigGgatGAG iardc GLPA_HAEIN : 21- 32: slstd ViiigGgatGAG iardc GLPD_BACSU : 155- 164: qkepl Vkkd-Glk-GGG yyvey GLPD_ECOLI : 8- 17: tkdli Vigg-Gin-GAG iaada GLPD_STRPN : 4- 13: sqp VsfdtGl--GDG rmvfv GPDM_HUMAN : 74- 83: efdil Vigg-Gat-GSG calda GPDM_RAT : 74- 83: efdil Vigg-Gat-GCG calda GPDM_YEAST : 70- 81: thqfd VliigGgatGTG calda M 13: 15.7078 8( 8) G-T-T-[DS] Occurences: 8(8) GLPA_ECOLI : 267- 270: tisli GTTS lridy GLPA_HAEIN : 277- 280: ticvi GTTS sripy GLPD_BACSU : 294- 297: gktyv GTTD tvyke GLPD_ECOLI : 269- 272: efsii GTTD veykg GLPD_STRPN : 28- 31: nktyf GTTD tdytg GPDM_HUMAN : 353- 356: kmtia GTTD tptdv GPDM_RAT : 353- 356: kmtia GTTD sptdv GPDM_YEAST : 371- 374: gkvla GTTD iplkq N 14: 14.6802 9( 8) A-G-x(0,2)-R-x(1,3)-L Occurences: 9(8) GLPA_ECOLI : 21- 29: ggatg AGiaRdcaL rglrv GLPA_HAEIN : 31- 39: ggatg AGiaRdcaL rgidc GLPA_HAEIN : 322- 327: vlray AGv-Rp--L vasdd GLPD_BACSU : 340- 345: iessw AGl-Rp--L iheeg GLPD_ECOLI : 23- 27: iaada AG--Rg--L svlml GLPD_STRPN : 74- 79: iessw AGl-Rp--L iagns GPDM_HUMAN : 459- 467: thnlk AGpsRtvgL flqgg GPDM_RAT : 459- 467: lhnln AGpsRtvgL flqgg GPDM_YEAST : 416- 421: vlsaw AGv-Rp--L vrdpr O 15: 14.2528 8( 8) G-x(1,2)-R-x(2)-[ACSV]-x-D Occurences: 8(8) GLPA_ECOLI : 57- 64: gllhs Ga-RyaVtD aesar GLPA_HAEIN : 67- 74: gllhs Ga-RyaVnD qesae GLPD_BACSU : 379- 386: ggklt Gy-RkmAdD ivdlv GLPD_ECOLI : 315- 322: vwtys Gv-RplCdD esdsp GLPD_STRPN : 94- 102: nggnn GtiRdeSfD nliat GPDM_HUMAN : 400- 407: laaws Gi-RplVtD pksad GPDM_RAT : 400- 407: laaws Gi-RplVtD pksan GPDM_YEAST : 417- 424: lsawa Gv-RplVrD prtip P 16: 13.8896 9( 8) E-x(3,4)-A-x(3)-L-x(2)-[DENRS] Occurences: 9(8) GLPA_ECOLI : 443- 454: avtag Evqy-AvenLnvN slldl GLPA_HAEIN : 453- 464: avtag Evry-AvdeLdvN nlvdl GLPD_BACSU : 203- 214: kelly Ekgk-AvgvLieD vltkk GLPD_ECOLI : 458- 470: ylvdh EwvrrAddaLwrR tkqgm GLPD_STRPN : 119- 131: kektr EdvesAvskLesS tsekh GPDM_HUMAN : 590- 602: dykkq EqletArkfLyyE mgyks GPDM_RAT : 590- 602: elrkq EeletAtrfLyyE mgyks GPDM_RAT : 591- 602: lrkqe Elet-AtrfLyyE mgyks GPDM_YEAST : 126- 137: ekafw Efsk-AqldLviE alner Q 17: 12.5102 8( 8) E-x(2)-D-x(3)-G Occurences: 8(8) GLPA_ECOLI : 38- 45: rvilv ErhDiatG atgrn GLPA_HAEIN : 48- 55: dcill ErrDiatG atgrn GLPD_BACSU : 52- 59: kvals EmqDfaaG tssrs GLPD_ECOLI : 185- 192: glwiv EaeDidtG kkysw GLPD_STRPN : 46- 53: pkvtq EdvDyllG ivnnr GPDM_HUMAN : 99- 106: ktalv ErdDfssG tssrs GPDM_RAT : 99- 106: ktalv ErnDfasG tssrs GPDM_YEAST : 97- 104: nvalv EkgDfasG tssks R 18: 12.5102 8( 8) G-T-T Occurences: 8(8) GLPA_ECOLI : 267- 269: tisli GTT slrid GLPA_HAEIN : 277- 279: ticvi GTT ssrip GLPD_BACSU : 294- 296: gktyv GTT dtvyk GLPD_ECOLI : 269- 271: efsii GTT dveyk GLPD_STRPN : 28- 30: nktyf GTT dtdyt GPDM_HUMAN : 353- 355: kmtia GTT dtptd GPDM_RAT : 353- 355: kmtia GTT dsptd GPDM_YEAST : 371- 373: gkvla GTT diplk S 19: 12.0102 12( 8) G-x(3)-T-x(0,1)-Y Occurences: 12(8) GLPA_ECOLI : 353- 358: ititg GklmT-Y rlmae GLPA_HAEIN : 363- 368: ititg GklmT-Y rlmae GLPD_BACSU : 294- 300: gktyv GttdTvY keale GLPD_ECOLI : 352- 358: llsvf GgklTtY rklae GLPD_ECOLI : 353- 358: lsvfg GkltT-Y rklae GLPD_STRPN : 28- 34: nktyf GttdTdY tgdle GPDM_HUMAN : 434- 440: litia GgkwTtY rsmae GPDM_HUMAN : 435- 440: itiag GkwtT-Y rsmae GPDM_RAT : 434- 440: litia GgkwTtY rsmae GPDM_RAT : 435- 440: itiag GkwtT-Y rsmae GPDM_YEAST : 459- 465: litia GgkwTtY rqmae GPDM_YEAST : 460- 465: itiag GkwtT-Y rqmae T 20: 12.0102 11( 8) T-x(4,5)-L-D Occurences: 11(8) GLPA_ECOLI : 154- 160: dpfrl Taanm-LD akehg GLPA_HAEIN : 105- 112: eglfi TlpedsLD yqktf GLPD_BACSU : 33- 40: igggi TgagtaLD aasrg GLPD_ECOLI : 331- 337: spqai Trdyt-LD ihden GLPD_STRPN : 132- 138: kless Tsekh-LD GPDM_HUMAN : 80- 87: iggga TgsgcaLD avtrg GPDM_HUMAN : 707- 713: ailmk Taeen-LD rrvpi GPDM_RAT : 80- 87: iggga TgcgcaLD avtrg GPDM_RAT : 707- 713: ailmk Taeen-LD rrvpi GPDM_YEAST : 78- 85: iggga TgtgcaLD aatrg GPDM_YEAST : 601- 607: fllrr Trfaf-LD akeal Number of patterns evaluated by Pratt:4284 Total running time: 4 seconds