------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file EUKARYOTIC_PORIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename EUKARYOTIC_PORIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: POR1_BOVIN 282 POR1_HUMAN 282 POR1_WHEAT 275 POR2_HUMAN 347 POR4_SOLTU 275 POR6_SOLTU 275 PORI_DICDI 275 PORI_MAIZE 277 PORI_NEUCR 283 PORI_PEA 275 PORI_YEAST 283 YIL4_YEAST 281 Pratt run started at Thu Feb 6 19:27:29 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 20( 12) A-x-G-x(1,2)-K 2: 12.0102 13( 12) G-x(4,5)-L-x(3)-T 3: 11.5102 21( 12) T-x(1,3)-G-x(4)-L 4: 11.5102 16( 12) N-x(0,2)-G-x(4)-L 5: 11.5102 15( 12) T-x(3)-K-x(1,3)-N 6: 11.5102 13( 12) T-x(2,3)-K-x(1,2)-N 7: 11.5102 24( 12) G-x(3,4)-T-x(3,4)-K 8: 11.5102 20( 12) T-x(1,2)-V-x(0,1)-G 9: 11.5102 17( 12) T-x(4,5)-K-x(2,3)-L 10: 11.5102 28( 12) G-x(2,3)-T-x(3,4)-K 11: 11.5102 14( 12) L-x(3,4)-G-x(1,2)-T 12: 11.5102 18( 12) L-x(0,1)-T-x(0,1)-T 13: 11.5102 24( 12) T-x(4,5)-T-x(2,3)-L 14: 11.5102 19( 12) S-x(3,4)-T-x(1,2)-T 15: 11.5102 19( 12) S-x(3,4)-T-x(0,1)-T 16: 11.5102 18( 12) S-x(3,5)-T-x-T 17: 11.5102 14( 12) L-x(2,3)-T-x(1,2)-T 18: 11.5102 24( 12) T-x(2,3)-N-x(3,4)-T 19: 11.5102 27( 12) G-x(1,2)-K-x(2,3)-L 20: 11.5102 12( 12) N-x(5)-G-x(2,4)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 13.7449 12( 12) T-x(2,3)-K-x(1,2)-N-x(3)-[ADNT] B 2: 13.7213 18( 12) G-x(3,4)-T-x(3,4)-K-x-[AGPT] C 3: 13.7110 17( 12) T-x(1,2)-V-x(0,1)-G-x(3)-[DNST] D 4: 13.7008 12( 12) T-x-[DNQT]-x-K-x(1,3)-N E 5: 13.4145 15( 12) T-x(4,5)-T-x(2,3)-L-x(4)-[ADENT] F 6: 13.4109 22( 12) G-x(2,3)-T-x(3,4)-K-x-[AGNST] G 7: 13.3981 15( 12) S-x(3,4)-T-x(0,1)-T-x(3)-[DGPST] H 8: 13.1539 16( 12) N-x(0,2)-G-x(3)-[ADGNST]-L I 9: 12.0102 20( 12) A-x-G-x(1,2)-K J 10: 12.0102 13( 12) G-x(4,5)-L-x(3)-T K 11: 11.5102 21( 12) T-x(1,3)-G-x(4)-L L 12: 11.5102 17( 12) T-x(4,5)-K-x(2,3)-L M 13: 11.5102 14( 12) L-x(3,4)-G-x(1,2)-T N 14: 11.5102 18( 12) L-x(0,1)-T-x(0,1)-T O 15: 11.5102 19( 12) S-x(3,4)-T-x(1,2)-T P 16: 11.5102 18( 12) S-x(3,5)-T-x-T Q 17: 11.5102 14( 12) L-x(2,3)-T-x(1,2)-T R 18: 11.5102 24( 12) T-x(2,3)-N-x(3,4)-T S 19: 11.5102 27( 12) G-x(1,2)-K-x(2,3)-L T 20: 11.5102 12( 12) N-x(5)-G-x(2,4)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 13.7449 12( 12) T-x(2,3)-K-x(1,2)-N-x(3)-[ADNT] Occurences: 12(12) POR1_BOVIN : 69- 79: teygl TfteKw-NtdnT lgtei POR1_HUMAN : 69- 79: teygl TfteKw-NtdnT lgtei POR1_WHEAT : 65- 75: knkni TvdvKa-NsasN vitti POR2_HUMAN : 96- 106: ceygl TfteKw-NtdnT lgtei POR4_SOLTU : 57- 67: ladvn Tql-KnkNvttD ikvdt POR6_SOLTU : 57- 67: ladvs Tql-KnkNittD vkvdt PORI_DICDI : 258- 269: gwnvn TknfKqgNtfgA tvnlt PORI_MAIZE : 66- 76: knkkl TvdvKa-NsesD lltti PORI_NEUCR : 28- 38: hlaag TievKs-NtpnN vafkv PORI_PEA : 57- 67: lgdvn Tql-KnkNittD ikvdt PORI_YEAST : 207- 218: vgaka TmncKlpNsnvN iefat YIL4_YEAST : 242- 252: dsglt TlsyKr-NlnkD islgv B 2: 13.7213 18( 12) G-x(3,4)-T-x(3,4)-K-x-[AGPT] Occurences: 18(12) POR1_BOVIN : 44- 54: eftss Gsan-Tett-KvT gslet POR1_BOVIN : 243- 253: nssli Glgy-Tqtl-KpG ikltl POR1_HUMAN : 44- 54: eftss Gsan-Tett-KvT gslet POR1_HUMAN : 243- 253: nssli Glgy-Tqtl-KpG ikltl POR1_WHEAT : 37- 48: tytan Gpai-TatstKkA dltvg POR2_HUMAN : 71- 81: efsts Gssn-Tdtg-KvT gtlet POR4_SOLTU : 3- 14: gk GpglyTeig-KkA rdlly POR4_SOLTU : 37- 48: tyspt Gvvi-TssgsKkG dlfla POR4_SOLTU : 254- 265: lftvs Gevd-TksvdKgA kfgla POR6_SOLTU : 37- 48: tystt Gvai-TasglKkG elfla POR6_SOLTU : 254- 265: lftis Gevd-TraieKsA kigla PORI_DICDI : 253- 264: tkfvl GwnvnTknf-KqG ntfga PORI_MAIZE : 256- 267: fvtis Gdvd-TkaieKsT kvgls PORI_NEUCR : 204- 214: sqvea Gska-Twns-KtG ntvgl PORI_PEA : 3- 14: vk GpglyTdig-KkA rdlly PORI_PEA : 37- 48: tyspt Gvai-TssgtKkG elflg PORI_YEAST : 203- 213: aflqv Gaka-Tmnc-KlP nsnvn YIL4_YEAST : 38- 48: ttten Gvnf-Tlka-KqG vtegp C 3: 13.7110 17( 12) T-x(1,2)-V-x(0,1)-G-x(3)-[DNST] Occurences: 17(12) POR1_BOVIN : 50- 59: sante TtkVtGsleT kyrwt POR1_BOVIN : 51- 59: antet Tk-VtGsleT kyrwt POR1_HUMAN : 50- 59: sante TtkVtGsleT kyrwt POR1_HUMAN : 51- 59: antet Tk-VtGsleT kyrwt POR1_WHEAT : 195- 202: veksg Ta-V-GaelT hsfss POR2_HUMAN : 77- 86: ssntd TgkVtGtleT kykwc POR4_SOLTU : 118- 125: yagic Ts-V-GltaN pivnf POR4_SOLTU : 195- 202: splts Ta-V-GaevN hsfst POR6_SOLTU : 195- 202: kpvtn Ta-V-GaelT hsfss PORI_DICDI : 248- 257: ntsnn TkfVlGwnvN tknfk PORI_MAIZE : 197- 204: knhsg Ta-V-GaelS hsmsr PORI_NEUCR : 256- 264: lregv TlgV-GasfD tqkld PORI_NEUCR : 272- 280: kldqa ThkV-GtsfT fes PORI_PEA : 195- 202: nplsn Ta-V-GvdiS hrfst PORI_PEA : 224- 232: aldpl Tt-VkGrvtN sgkas PORI_YEAST : 256- 264: lrpgv TlgV-GssfD alkls YIL4_YEAST : 56- 64: egpiq Ts-VeGrfyD rkegv D 4: 13.7008 12( 12) T-x-[DNQT]-x-K-x(1,3)-N Occurences: 12(12) POR1_BOVIN : 69- 75: teygl TfTeKw--N tdntl POR1_HUMAN : 69- 75: teygl TfTeKw--N tdntl POR1_WHEAT : 65- 71: knkni TvDvKa--N sasnv POR2_HUMAN : 96- 102: ceygl TfTeKw--N tdntl POR4_SOLTU : 65- 73: knknv TtDiKvdtN snlft POR6_SOLTU : 65- 73: knkni TtDvKvdtN snvyt PORI_DICDI : 258- 265: gwnvn TkNfKqg-N tfgat PORI_MAIZE : 66- 72: knkkl TvDvKa--N sesdl PORI_NEUCR : 208- 215: agska TwNsKtg-N tvgle PORI_PEA : 65- 73: knkni TtDiKvdtN snlft PORI_YEAST : 207- 214: vgaka TmNcKlp-N snvni YIL4_YEAST : 206- 214: vgtka TlQsKtssN mnief E 5: 13.4145 15( 12) T-x(4,5)-T-x(2,3)-L-x(4)-[ADENT] Occurences: 15(12) POR1_BOVIN : 71- 85: ygltf Tekwn-TdntLgteiT vedql POR1_HUMAN : 71- 85: ygltf Tekwn-TdntLgteiT vedql POR1_WHEAT : 213- 228: nensl TfgtqhTldpLtlvkA rinns POR2_HUMAN : 98- 112: ygltf Tekwn-TdntLgteiA iedqi POR4_SOLTU : 66- 81: nknvt TdikvdTnsnLfttiT vdeaa POR6_SOLTU : 211- 224: ssnen Tltig-Tqh-LldplT tvkar POR6_SOLTU : 211- 225: ssnen Tltig-TqhlLdpltT vkarv PORI_DICDI : 185- 198: qills Tlyta-Tsk-LsfagD vtvdl PORI_MAIZE : 9- 24: avgly TdigkkTrdlLykdyN thqkf PORI_MAIZE : 82- 96: lltti TvdefgTpg-LksiiN lvvpd PORI_NEUCR : 48- 62: vtgks Thdkv-TsgaLegkfT dkpng PORI_NEUCR : 71- 85: ngltv Tqtwn-TanaLetkvE madnl PORI_PEA : 66- 81: nknit TdikvdTnsnLfttiT vnepa PORI_PEA : 211- 225: stken Tftlg-TqhaLdpltT vkgrv PORI_YEAST : 72- 86: tglgl TqgwsnTnn-LqtklE fanlt YIL4_YEAST : 150- 165: gfvgg TdiaydTaagLcaryA msigy F 6: 13.4109 22( 12) G-x(2,3)-T-x(3,4)-K-x-[AGNST] Occurences: 22(12) POR1_BOVIN : 44- 54: eftss GsanTett-KvT gslet POR1_BOVIN : 243- 253: nssli GlgyTqtl-KpG ikltl POR1_HUMAN : 44- 54: eftss GsanTett-KvT gslet POR1_HUMAN : 243- 253: nssli GlgyTqtl-KpG ikltl POR1_WHEAT : 37- 48: tytan GpaiTatstKkA dltvg POR2_HUMAN : 71- 81: efsts GssnTdtg-KvT gtlet POR4_SOLTU : 5- 14: gkgp Gly-Teig-KkA rdlly POR4_SOLTU : 37- 48: tyspt GvviTssgsKkG dlfla POR4_SOLTU : 254- 265: lftvs GevdTksvdKgA kfgla POR6_SOLTU : 37- 48: tystt GvaiTasglKkG elfla POR6_SOLTU : 254- 265: lftis GevdTraieKsA kigla PORI_DICDI : 197- 206: klsfa Gdv-Tvdl-KaS ekaps PORI_MAIZE : 6- 15: mvvav Gly-Tdig-KkT rdlly PORI_MAIZE : 256- 267: fvtis GdvdTkaieKsT kvgls PORI_NEUCR : 204- 214: sqvea GskaTwns-KtG ntvgl PORI_PEA : 5- 14: vkgp Gly-Tdig-KkA rdlly PORI_PEA : 37- 48: tyspt GvaiTssgtKkG elflg PORI_PEA : 228- 237: lttvk Grv-Tnsg-KaS aliqh PORI_YEAST : 52- 63: qpvkd GplsTnveaKlN dkqtg YIL4_YEAST : 38- 48: ttten GvnfTlka-KqG vtegp YIL4_YEAST : 202- 212: rylqv GtkaTlqs-KtS snmni YIL4_YEAST : 239- 248: kiads Glt-Tlsy-KrN lnkdi G 7: 13.3981 15( 12) S-x(3,4)-T-x(0,1)-T-x(3)-[DGPST] Occurences: 15(12) POR1_BOVIN : 43- 54: lefts SgsanTeTtkvT gslet POR1_BOVIN : 45- 55: ftssg SanteT-TkvtG sletk POR1_HUMAN : 43- 54: lefts SgsanTeTtkvT gslet POR1_HUMAN : 45- 55: ftssg SanteT-TkvtG sletk POR1_WHEAT : 74- 83: kansa Snvi-T-TitaD dlaap POR2_HUMAN : 70- 81: vefst SgssnTdTgkvT gtlet POR4_SOLTU : 74- 83: kvdtn Snlf-T-TitvD eaapg POR6_SOLTU : 24- 35: yrdyv SdhkfTvTtysT tgvai POR6_SOLTU : 74- 83: kvdtn Snvy-T-TitvD epapg POR6_SOLTU : 74- 85: kvdtn SnvytTiTvdeP apglk PORI_DICDI : 184- 194: kqill Stly-TaTsklS fagdv PORI_MAIZE : 75- 84: kanse Sdll-T-TitvD efgtp PORI_NEUCR : 177- 187: hapty Saai-TaTdnlS vfsas PORI_PEA : 74- 85: kvdtn SnlftTiTvneP apgvk PORI_YEAST : 109- 119: pgvak SavlnT-TfteP fftar YIL4_YEAST : 28- 38: htnpl SlnisT-TtenG vnftl H 8: 13.1539 16( 12) N-x(0,2)-G-x(3)-[ADGNST]-L Occurences: 16(12) POR1_BOVIN : 268- 276: dgknv NagGhklGL glefq POR1_HUMAN : 268- 276: dgknv NagGhklGL glefq POR1_WHEAT : 231- 239: vkari NnsGkasAL iqhef POR1_WHEAT : 232- 239: karin Ns-GkasAL iqhef POR2_HUMAN : 45- 52: ardif Nk-GfgfGL vkldv POR4_SOLTU : 231- 239: vkari NnfGkasAL lqhew POR4_SOLTU : 232- 239: karin Nf-GkasAL lqhew POR6_SOLTU : 231- 239: vkarv NsyGkasAL iqhew PORI_DICDI : 2- 9: m Np-GlyaDL tkpta PORI_DICDI : 265- 273: nfkqg NtfGatvNL tl PORI_MAIZE : 233- 241: iktrf NnyGmasAL vqhew PORI_MAIZE : 234- 241: ktrfn Ny-GmasAL vqhew PORI_NEUCR : 107- 115: flpat NarGakfNL hfkqs PORI_PEA : 232- 239: kgrvt Ns-GkasAL iqhew PORI_YEAST : 37- 43: qttta N--GikfSL kakqp YIL4_YEAST : 37- 43: sttte N--GvnfTL kakqg I 9: 12.0102 20( 12) A-x-G-x(1,2)-K Occurences: 20(12) POR1_BOVIN : 91- 95: vedql ArGl-K ltfds POR1_BOVIN : 169- 173: tqsnf AvGy-K tdefq POR1_BOVIN : 269- 273: gknvn AgGh-K lglgl POR1_HUMAN : 91- 95: vedql ArGl-K ltfds POR1_HUMAN : 169- 173: tqsnf AvGy-K tdefq POR1_HUMAN : 269- 273: gknvn AgGh-K lglgl POR1_WHEAT : 87- 91: addla ApGl-K tilsf POR2_HUMAN : 296- 300: gksin AgGh-K vgspw POR4_SOLTU : 86- 90: tvdea ApGl-K tilsf POR6_SOLTU : 42- 46: gvait AsGl-K kgelf POR6_SOLTU : 42- 47: gvait AsGlkK gelfl POR6_SOLTU : 86- 90: tvdep ApGl-K tifsf PORI_DICDI : 96- 101: glkav AnGdsK qnfst PORI_DICDI : 145- 150: svgvq AeGnaK ntlkn PORI_MAIZE : 43- 48: gvait AaGtrK nesif PORI_MAIZE : 135- 139: vnlsg AfGs-K alsvg PORI_NEUCR : 91- 95: madnl AkGl-K aegif PORI_NEUCR : 108- 112: lpatn ArGa-K fnlhf PORI_PEA : 86- 90: tvnep ApGv-K ailsf PORI_YEAST : 36- 40: vqttt AnGi-K fslka YIL4_YEAST : 91- 95: efski ApGw-K gdvna J 10: 12.0102 13( 12) G-x(4,5)-L-x(3)-T Occurences: 13(12) POR1_BOVIN : 22- 32: ftkgy GfglikLdlkT kseng POR1_HUMAN : 22- 32: ftkgy GfglikLdlkT kseng POR1_WHEAT : 143- 152: salav Gadvs-LdtaT knfak POR1_WHEAT : 215- 224: nsltf Gtqht-LdplT lvkar POR2_HUMAN : 49- 59: fnkgf GfglvkLdvkT kscsg POR4_SOLTU : 215- 224: niitv Gtqhr-LdplT svkar POR6_SOLTU : 215- 224: ntlti Gtqhl-LdplT tvkar PORI_DICDI : 4- 13: mnp Glyad-LtkpT adfik PORI_MAIZE : 217- 226: stlif Gsqhs-LdphT tiktr PORI_NEUCR : 214- 223: wnskt Gntvg-LevaT kyrid PORI_PEA : 215- 224: ntftl Gtqha-LdplT tvkgr PORI_YEAST : 125- 135: fftar GafdlcLkspT fvgdl YIL4_YEAST : 202- 211: rylqv Gtkat-LqskT ssnmn K 11: 11.5102 21( 12) T-x(1,3)-G-x(4)-L Occurences: 21(12) POR1_BOVIN : 18- 25: ardvf Tk--GygfgL ikldl POR1_BOVIN : 249- 258: lgytq TlkpGikltL salld POR1_HUMAN : 18- 25: ardvf Tk--GygfgL ikldl POR1_HUMAN : 249- 258: lgytq TlkpGikltL salld POR1_WHEAT : 213- 220: nensl Tf--GtqhtL dpltl POR2_HUMAN : 276- 285: vgytq TlrpGvkltL salvd POR4_SOLTU : 213- 220: nenii Tv--GtqhrL dplts POR6_SOLTU : 211- 220: ssnen TltiGtqhlL dpltt POR6_SOLTU : 213- 220: nentl Ti--GtqhlL dpltt PORI_DICDI : 266- 273: fkqgn Tf--GatvnL tl PORI_MAIZE : 213- 222: srnes TlifGsqhsL dphtt PORI_MAIZE : 267- 275: aieks Tkv-GlslvL kh PORI_NEUCR : 106- 115: sflpa TnarGakfnL hfkqs PORI_PEA : 211- 220: stken TftlGtqhaL dpltt PORI_PEA : 213- 220: kentf Tl--GtqhaL dpltt PORI_PEA : 231- 239: vkgrv Tns-GkasaL iqhew PORI_YEAST : 34- 43: fdvqt TtanGikfsL kakqp PORI_YEAST : 35- 43: dvqtt Tan-GikfsL kakqp PORI_YEAST : 91- 98: efanl Tp--GlkneL itslt YIL4_YEAST : 34- 43: lnist TtenGvnftL kakqg YIL4_YEAST : 35- 43: nistt Ten-GvnftL kakqg L 12: 11.5102 17( 12) T-x(4,5)-K-x(2,3)-L Occurences: 17(12) POR1_BOVIN : 249- 258: lgytq TlkpgiKlt-L salld POR1_HUMAN : 249- 258: lgytq TlkpgiKlt-L salld POR1_WHEAT : 41- 50: ngpai TatstkKad-L tvgei POR1_WHEAT : 41- 50: ngpai Tatst-KkadL tvgei POR2_HUMAN : 182- 190: agyqm Tfdsa-Ksk-L trnnf POR2_HUMAN : 276- 285: vgytq TlrpgvKlt-L salvd POR4_SOLTU : 8- 17: gpgly Teigk-KardL lykdy POR4_SOLTU : 41- 50: tgvvi TssgskKgd-L fladv POR4_SOLTU : 41- 50: tgvvi Tssgs-KkgdL fladv POR6_SOLTU : 41- 50: tgvai TasglkKge-L fladv POR6_SOLTU : 41- 50: tgvai Tasgl-KkgeL fladv PORI_DICDI : 244- 252: syiyn Tsnnt-Kfv-L gwnvn PORI_MAIZE : 9- 18: avgly Tdigk-KtrdL lykdy PORI_NEUCR : 106- 115: sflpa TnargaKfn-L hfkqs PORI_PEA : 8- 17: gpgly Tdigk-KardL lykdy PORI_PEA : 41- 50: tgvai TssgtkKge-L flgdv PORI_PEA : 41- 50: tgvai Tssgt-KkgeL flgdv PORI_YEAST : 34- 43: fdvqt TtangiKfs-L kakqp PORI_YEAST : 35- 43: dvqtt Tangi-Kfs-L kakqp PORI_YEAST : 103- 112: litsl Tpgva-KsavL nttft YIL4_YEAST : 241- 249: adsgl Ttlsy-Krn-L nkdis M 13: 11.5102 14( 12) L-x(3,4)-G-x(1,2)-T Occurences: 14(12) POR1_BOVIN : 241- 247: vnnss Ligl-Gy-T qtlkp POR1_HUMAN : 241- 247: vnnss Ligl-Gy-T qtlkp POR1_WHEAT : 85- 92: itadd Laap-GlkT ilsfa POR2_HUMAN : 268- 274: vnnss Ligv-Gy-T qtlrp POR4_SOLTU : 110- 118: levqy LhdyaGicT svglt POR6_SOLTU : 110- 118: velqy LheyaGinT siglt POR6_SOLTU : 174- 180: iasla Lndk-Gd-T vsasy PORI_DICDI : 193- 200: tatsk Lsfa-GdvT vdlka PORI_MAIZE : 7- 15: vvavg LytdiGkkT rdlly PORI_MAIZE : 176- 182: iaslh Lnnh-Gd-T lvasy PORI_NEUCR : 250- 256: iaynv Llre-Gv-T lgvga PORI_PEA : 223- 231: haldp LttvkGrvT nsgka PORI_YEAST : 250- 256: laykq Llrp-Gv-T lgvgs YIL4_YEAST : 43- 50: gvnft LkakqGv-T egpiq N 14: 11.5102 18( 12) L-x(0,1)-T-x(0,1)-T Occurences: 18(12) POR1_BOVIN : 68- 71: wteyg L-TfT ekwnt POR1_HUMAN : 68- 71: wteyg L-TfT ekwnt POR1_WHEAT : 30- 32: dhkft L-T-T ytang POR1_WHEAT : 30- 34: dhkft LtTyT angpa POR1_WHEAT : 148- 152: gadvs LdTaT knfak POR2_HUMAN : 95- 98: wceyg L-TfT ekwnt POR4_SOLTU : 76- 79: dtnsn LfT-T itvde POR4_SOLTU : 192- 195: htvsp L-TsT avgae POR6_SOLTU : 223- 225: hlldp L-T-T vkarv PORI_DICDI : 27- 30: aetfk LdT-T fkgky PORI_DICDI : 186- 190: illst LyTaT sklsf PORI_MAIZE : 31- 33: hqkfc L-T-T sspng PORI_MAIZE : 77- 80: nsesd LlT-T itvde PORI_MAIZE : 78- 80: sesdl L-T-T itvde PORI_MAIZE : 78- 82: sesdl LtTiT vdefg PORI_NEUCR : 68- 71: dkpng L-TvT qtwnt PORI_PEA : 76- 79: dtnsn LfT-T itvne PORI_PEA : 223- 225: haldp L-T-T vkgrv PORI_YEAST : 112- 115: aksav LnT-T ftepf YIL4_YEAST : 240- 242: iadsg L-T-T lsykr O 15: 11.5102 19( 12) S-x(3,4)-T-x(1,2)-T Occurences: 19(12) POR1_BOVIN : 43- 50: lefts SgsanTe-T tkvtg POR1_BOVIN : 43- 51: lefts SgsanTetT kvtgs POR1_HUMAN : 43- 50: lefts SgsanTe-T tkvtg POR1_HUMAN : 43- 51: lefts SgsanTetT kvtgs POR1_WHEAT : 74- 81: kansa SnvitTi-T addla POR1_WHEAT : 74- 81: kansa Snvi-TtiT addla POR1_WHEAT : 211- 219: ssnen SltfgTqhT ldplt POR2_HUMAN : 70- 77: vefst SgssnTd-T gkvtg POR4_SOLTU : 74- 81: kvdtn SnlftTi-T vdeaa POR4_SOLTU : 74- 81: kvdtn Snlf-TtiT vdeaa POR6_SOLTU : 24- 31: yrdyv SdhkfTv-T tystt POR6_SOLTU : 24- 32: yrdyv SdhkfTvtT ysttg POR6_SOLTU : 74- 81: kvdtn SnvytTi-T vdepa POR6_SOLTU : 74- 81: kvdtn Snvy-TtiT vdepa POR6_SOLTU : 206- 213: lthsf SsnenTl-T igtqh POR6_SOLTU : 207- 213: thsfs Snen-Tl-T igtqh PORI_DICDI : 67- 75: ylgkv SngnfTvdT ngvkk PORI_DICDI : 184- 190: kqill Stly-Ta-T sklsf PORI_MAIZE : 75- 82: kanse SdlltTi-T vdefg PORI_MAIZE : 75- 82: kanse Sdll-TtiT vdefg PORI_NEUCR : 177- 183: hapty Saai-Ta-T dnlsv PORI_PEA : 24- 32: ykdyh SdkkfTisT ysptg PORI_PEA : 74- 81: kvdtn SnlftTi-T vnepa PORI_PEA : 74- 81: kvdtn Snlf-TtiT vnepa PORI_PEA : 206- 213: ishrf StkenTf-T lgtqh PORI_YEAST : 109- 117: pgvak SavlnTtfT epfft YIL4_YEAST : 28- 35: htnpl SlnisTt-T engvn P 16: 11.5102 18( 12) S-x(3,5)-T-x-T Occurences: 18(12) POR1_BOVIN : 42- 50: gleft SsgsanTeT tkvtg POR1_BOVIN : 43- 50: lefts Sgsan-TeT tkvtg POR1_HUMAN : 42- 50: gleft SsgsanTeT tkvtg POR1_HUMAN : 43- 50: lefts Sgsan-TeT tkvtg POR1_WHEAT : 74- 81: kansa Snvit-TiT addla POR2_HUMAN : 70- 77: vefst Sgssn-TdT gkvtg POR4_SOLTU : 74- 81: kvdtn Snlft-TiT vdeaa POR6_SOLTU : 24- 31: yrdyv Sdhkf-TvT tystt POR6_SOLTU : 74- 81: kvdtn Snvyt-TiT vdepa POR6_SOLTU : 206- 213: lthsf Ssnen-TlT igtqh POR6_SOLTU : 207- 213: thsfs Snen--TlT igtqh PORI_DICDI : 184- 190: kqill Stly--TaT sklsf PORI_MAIZE : 75- 82: kanse Sdllt-TiT vdefg PORI_NEUCR : 177- 183: hapty Saai--TaT dnlsv PORI_PEA : 74- 81: kvdtn Snlft-TiT vnepa PORI_PEA : 206- 213: ishrf Stken-TfT lgtqh PORI_YEAST : 109- 117: pgvak SavlntTfT epfft YIL4_YEAST : 28- 35: htnpl Slnis-TtT engvn Q 17: 11.5102 14( 12) L-x(2,3)-T-x(1,2)-T Occurences: 14(12) POR1_BOVIN : 244- 249: sslig Lgy-Tq-T lkpgi POR1_HUMAN : 244- 249: sslig Lgy-Tq-T lkpgi POR1_WHEAT : 212- 219: snens LtfgTqhT ldplt POR2_HUMAN : 121- 127: qicqg Lkl-TfdT tfspn POR2_HUMAN : 234- 240: dtsvn Law-TsgT nctrf POR4_SOLTU : 76- 81: dtnsn Lft-Ti-T vdeaa POR6_SOLTU : 145- 151: algtd LsfdTa-T gnftk PORI_DICDI : 182- 188: mdkqi Lls-TlyT atskl PORI_MAIZE : 77- 82: nsesd Llt-Ti-T vdefg PORI_NEUCR : 68- 73: dkpng Ltv-Tq-T wntan PORI_PEA : 76- 81: dtnsn Lft-Ti-T vnepa PORI_YEAST : 112- 117: aksav Lnt-Tf-T epfft YIL4_YEAST : 29- 35: tnpls LnisTt-T engvn YIL4_YEAST : 199- 206: nvnry LqvgTkaT lqskt R 18: 11.5102 24( 12) T-x(2,3)-N-x(3,4)-T Occurences: 24(12) POR1_BOVIN : 32- 41: kldlk TkseNglefT ssgsa POR1_BOVIN : 71- 79: ygltf TekwNtdn-T lgtei POR1_BOVIN : 106- 115: sfspn TgrkNakikT gykre POR1_BOVIN : 203- 210: nkkle Tav-Nlaw-T agnsn POR1_HUMAN : 32- 41: kldlk TkseNglefT ssgsa POR1_HUMAN : 71- 79: ygltf TekwNtdn-T lgtei POR1_HUMAN : 106- 115: sfspn TgkkNakikT gykre POR1_HUMAN : 203- 210: nkkle Tav-Nlaw-T agnsn POR1_WHEAT : 32- 41: kftlt TytaNgpaiT atstk POR2_HUMAN : 98- 106: ygltf TekwNtdn-T lgtei POR2_HUMAN : 230- 237: cedld Tsv-Nlaw-T sgtnc POR4_SOLTU : 57- 65: ladvn TqlkNknv-T tdikv POR4_SOLTU : 57- 66: ladvn TqlkNknvtT dikvd POR4_SOLTU : 72- 79: dikvd Tns-Nlft-T itvde POR6_SOLTU : 57- 65: ladvs TqlkNkni-T tdvkv POR6_SOLTU : 57- 66: ladvs TqlkNknitT dvkvd POR6_SOLTU : 72- 79: dvkvd Tns-Nvyt-T itvde PORI_DICDI : 152- 159: gnakn Tlk-Nvna-T itirp PORI_MAIZE : 33- 42: kfclt TsspNgvaiT aagtr PORI_MAIZE : 58- 66: fgelh TqikNkkl-T vdvka PORI_NEUCR : 62- 71: legkf TdkpNgltvT qtwnt PORI_PEA : 57- 65: lgdvn TqlkNkni-T tdikv PORI_PEA : 57- 66: lgdvn TqlkNknitT dikvd PORI_PEA : 72- 79: dikvd Tns-Nlft-T itvne PORI_YEAST : 181- 188: yslga Tln-Neqi-T tvdff PORI_YEAST : 181- 189: yslga Tln-NeqitT vdffq YIL4_YEAST : 33- 42: slnis TtteNgvnfT lkakq YIL4_YEAST : 34- 42: lnist Tte-NgvnfT lkakq S 19: 11.5102 27( 12) G-x(1,2)-K-x(2,3)-L Occurences: 27(12) POR1_BOVIN : 24- 30: kgygf GliKld-L ktkse POR1_BOVIN : 253- 258: qtlkp Gi-Klt-L salld POR1_BOVIN : 270- 276: knvna GghKlg-L glefq POR1_BOVIN : 271- 276: nvnag Gh-Klg-L glefq POR1_HUMAN : 24- 30: kgygf GliKld-L ktkse POR1_HUMAN : 253- 258: qtlkp Gi-Klt-L salld POR1_HUMAN : 270- 276: knvna GghKlg-L glefq POR1_HUMAN : 271- 276: nvnag Gh-Klg-L glefq POR1_WHEAT : 11- 17: lysgi Gk-KakdL lyrdy POR1_WHEAT : 89- 94: dlaap Gl-Kti-L sfavp POR2_HUMAN : 280- 285: qtlrp Gv-Klt-L salvd POR4_SOLTU : 11- 17: lytei Gk-KardL lykdy POR4_SOLTU : 44- 50: vitss GskKgd-L fladv POR4_SOLTU : 44- 50: vitss Gs-KkgdL fladv POR4_SOLTU : 88- 93: deaap Gl-Kti-L sfrvp POR4_SOLTU : 264- 269: ksvdk Ga-Kfg-L alalk POR6_SOLTU : 11- 17: lysdi Gk-KardL lyrdy POR6_SOLTU : 44- 50: aitas GlkKge-L fladv POR6_SOLTU : 44- 50: aitas Gl-KkgeL fladv PORI_DICDI : 147- 153: gvqae GnaKnt-L knvna PORI_MAIZE : 12- 18: lytdi Gk-KtrdL lykdy PORI_NEUCR : 110- 115: atnar Ga-Kfn-L hfkqs PORI_PEA : 11- 17: lytdi Gk-KardL lykdy PORI_PEA : 44- 50: aitss GtkKge-L flgdv PORI_PEA : 44- 50: aitss Gt-KkgeL flgdv PORI_PEA : 88- 93: nepap Gv-Kai-L sfkvp PORI_YEAST : 38- 43: tttan Gi-Kfs-L kakqp PORI_YEAST : 93- 98: anltp Gl-Kne-L itslt PORI_YEAST : 105- 112: tsltp GvaKsavL nttft YIL4_YEAST : 202- 207: rylqv Gt-Kat-L qskts T 20: 11.5102 12( 12) N-x(5)-G-x(2,4)-A Occurences: 12(12) POR1_BOVIN : 213- 222: awtag NsntrfGia--A kyqid POR1_HUMAN : 213- 222: awtag NsntrfGia--A kyqid POR1_WHEAT : 130- 139: anpvv NlsgafGts--A lavga POR1_WHEAT : 130- 141: anpvv NlsgafGtsalA vgadv POR2_HUMAN : 102- 112: ftekw NtdntlGtei-A iedqi POR4_SOLTU : 129- 140: anpiv NfsgvvGtniiA lgtdv POR6_SOLTU : 129- 140: asplv NfsgvaGnntvA lgtdl PORI_DICDI : 136- 145: lafli NptfsvGvq--A egnak PORI_MAIZE : 131- 140: snpmv NlsgafGsk--A lsvgv PORI_NEUCR : 198- 207: yyhkv NsqveaGsk--A twnsk PORI_PEA : 129- 138: anpiv NfssviGtn--A lafga PORI_PEA : 129- 140: anpiv NfssviGtnalA fgadi PORI_YEAST : 197- 206: ffqnv NaflqvGak--A tmnck YIL4_YEAST : 196- 205: ffqnv NrylqvGtk--A tlqsk Number of patterns evaluated by Pratt:3615 Total running time: 3 seconds