------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file ETF_BETA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ETF_BETA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ETFB_HUMAN 255 ETFB_PARDE 252 ETFB_YEAST 261 FIXA_AZOCA 281 FIXA_ECOLI 268 FIXA_RHILE 18 FIXA_RHILP 279 FIXA_RHIME 292 Pratt run started at Thu Feb 6 19:27:21 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 9( 8) P-x(3,4)-I-x-V 2: 12.0102 12( 8) V-x(3,4)-K-Q 3: 11.5102 10( 8) D-x(1,3)-I-x-V 4: 11.5102 10( 8) V-x(1,2)-D-x(1,2)-Q 5: 11.5102 12( 8) V-x(3,4)-Q-x(0,1)-I 6: 11.5102 10( 8) K-x(1,2)-V-x(1,2)-D 7: 11.5102 13( 8) I-x(1,2)-V-x(2,3)-A 8: 11.5102 15( 8) V-x(2,4)-K-Q 9: 11.0102 9( 8) D-x(2,3)-I-x(1,3)-V 10: 11.0102 9( 8) P-x(2,3)-A-x(3,5)-V 11: 11.0102 10( 8) Q-x(3,4)-A-x(2,4)-V 12: 11.0102 13( 8) K-x(0,2)-Q-x(1,2)-D 13: 11.0102 9( 8) V-x(0,1)-V-x(1,3)-I 14: 11.0102 12( 8) I-x(0,1)-V-x(0,2)-V 15: 10.5102 14( 8) A-x(2,4)-R-x(0,2)-V 16: 10.5102 10( 8) D-x(1,3)-Q-x(2,4)-V 17: 10.5102 15( 8) V-x(1,3)-I-x(1,3)-P 18: 8.3401 25( 8) I-x-V 19: 8.3401 14( 8) A-Q 20: 8.3401 25( 8) D-x-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.5089 12( 8) V-x(3,4)-K-Q-x(2)-[DER]-[DGQST] B 2: 16.0089 15( 8) V-x(2,4)-K-Q-x(2)-[DER]-[DGQST] C 3: 15.8516 11( 8) K-x(0,2)-Q-x(1,2)-D-x-[ADNT]-x(3)-[ATV] D 4: 14.1427 11( 8) V-x(3,4)-Q-x(0,1)-I-x-[DGV] E 5: 13.7494 8( 8) V-x(1,2)-D-x(1,2)-Q-x(2)-[AIPV] F 6: 13.4279 10( 8) K-x(1,2)-V-x(1,2)-D-x-[ANQST] G 7: 12.0102 9( 8) P-x(3,4)-I-x-V H 8: 11.5102 10( 8) D-x(1,3)-I-x-V I 9: 11.5102 13( 8) I-x(1,2)-V-x(2,3)-A J 10: 11.0102 9( 8) D-x(2,3)-I-x(1,3)-V K 11: 11.0102 9( 8) P-x(2,3)-A-x(3,5)-V L 12: 11.0102 10( 8) Q-x(3,4)-A-x(2,4)-V M 13: 11.0102 9( 8) V-x(0,1)-V-x(1,3)-I N 14: 11.0102 12( 8) I-x(0,1)-V-x(0,2)-V O 15: 10.5102 14( 8) A-x(2,4)-R-x(0,2)-V P 16: 10.5102 10( 8) D-x(1,3)-Q-x(2,4)-V Q 17: 10.5102 15( 8) V-x(1,3)-I-x(1,3)-P R 18: 8.3401 25( 8) I-x-V S 19: 8.3401 14( 8) A-Q T 20: 8.3401 25( 8) D-x-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.5089 12( 8) V-x(3,4)-K-Q-x(2)-[DER]-[DGQST] Occurences: 12(8) ETFB_HUMAN : 120- 129: ekvdl Vllg-KQaiDD dcnqt ETFB_PARDE : 61- 71: eeiia VsigvKQaaET lrtal ETFB_YEAST : 123- 132: kgsnl Vlmg-KQaiDD dcnnt FIXA_AZOCA : 4- 13: mhi Vvci-KQvpDS aqirv FIXA_AZOCA : 118- 127: gapdi Vftg-KQtiDG dtaqv FIXA_ECOLI : 236- 245: wseqq Vaap-KQreRQ rivie FIXA_RHILE : 4- 13: mhi Vvci-KQvpDS aqirv FIXA_RHILP : 4- 13: mhi Vici-KQvpDS aqirv FIXA_RHILP : 116- 125: gtpdi Vfta-KQtiDG dtaqv FIXA_RHIME : 4- 13: mhl Vvci-KQvpDS aqirv FIXA_RHIME : 117- 127: fgtpd VvftgKQtiDG dtaqv FIXA_RHIME : 118- 127: gtpdv Vftg-KQtiDG dtaqv B 2: 16.0089 15( 8) V-x(2,4)-K-Q-x(2)-[DER]-[DGQST] Occurences: 15(8) ETFB_HUMAN : 120- 129: ekvdl Vllg-KQaiDD dcnqt ETFB_PARDE : 61- 71: eeiia VsigvKQaaET lrtal ETFB_YEAST : 123- 132: kgsnl Vlmg-KQaiDD dcnnt FIXA_AZOCA : 4- 13: mhi Vvci-KQvpDS aqirv FIXA_AZOCA : 5- 13: mhiv Vci--KQvpDS aqirv FIXA_AZOCA : 118- 127: gapdi Vftg-KQtiDG dtaqv FIXA_ECOLI : 236- 245: wseqq Vaap-KQreRQ rivie FIXA_RHILE : 4- 13: mhi Vvci-KQvpDS aqirv FIXA_RHILE : 5- 13: mhiv Vci--KQvpDS aqirv FIXA_RHILP : 4- 13: mhi Vici-KQvpDS aqirv FIXA_RHILP : 116- 125: gtpdi Vfta-KQtiDG dtaqv FIXA_RHIME : 4- 13: mhl Vvci-KQvpDS aqirv FIXA_RHIME : 5- 13: mhlv Vci--KQvpDS aqirv FIXA_RHIME : 117- 127: fgtpd VvftgKQtiDG dtaqv FIXA_RHIME : 118- 127: gtpdv Vftg-KQtiDG dtaqv C 3: 15.8516 11( 8) K-x(0,2)-Q-x(1,2)-D-x-[ADNT]-x(3)-[ATV] Occurences: 11(8) ETFB_HUMAN : 124- 134: lvllg K--QaiDdDcnqT gqmta ETFB_PARDE : 121- 131: liiag K--QaiDnDmnaT gqmla ETFB_YEAST : 127- 137: lvlmg K--QaiDdDcnnT gqmla FIXA_AZOCA : 8- 18: ivvci K--QvpDsAqirV hpvtn FIXA_AZOCA : 122- 132: ivftg K--QtiDgDtaqV gpgia FIXA_ECOLI : 45- 56: skada KisQy-DlNaieA acqlk FIXA_RHILE : 8- 18: ivvci K--QvpDsAqirV FIXA_RHILP : 8- 18: ivici K--QvpDsAqirV dpvtn FIXA_RHILP : 120- 130: ivfta K--QtiDgDtaqV gpgia FIXA_RHIME : 8- 18: lvvci K--QvpDsAqirV hpvtn FIXA_RHIME : 122- 132: vvftg K--QtiDgDtaqV gpgia D 4: 14.1427 11( 8) V-x(3,4)-Q-x(0,1)-I-x-[DGV] Occurences: 11(8) ETFB_HUMAN : 120- 129: ekvdl VllgkQaIdD dcnqt ETFB_PARDE : 163- 172: kvtre VdgglQtIaV slpav ETFB_YEAST : 123- 132: kgsnl VlmgkQaIdD dcnnt FIXA_AZOCA : 10- 18: vcikq VpdsaQ-IrV hpvtn FIXA_AZOCA : 118- 127: gapdi VftgkQtIdG dtaqv FIXA_ECOLI : 22- 30: tcykc Vpde-QdIaV nnadg FIXA_RHILE : 10- 18: vcikq VpdsaQ-IrV FIXA_RHILP : 10- 18: icikq VpdsaQ-IrV dpvtn FIXA_RHILP : 116- 125: gtpdi VftakQtIdG dtaqv FIXA_RHIME : 10- 18: vcikq VpdsaQ-IrV hpvtn FIXA_RHIME : 118- 127: gtpdv VftgkQtIdG dtaqv E 5: 13.7494 8( 8) V-x(1,2)-D-x(1,2)-Q-x(2)-[AIPV] Occurences: 8(8) ETFB_HUMAN : 227- 235: lsvis Ve-DppQrtA gvkve ETFB_PARDE : 87- 96: railv VaaDdvQqdI eplav ETFB_YEAST : 16- 23: vpvkr Vv-Df-QikP rvnkt FIXA_AZOCA : 10- 18: vcikq Vp-DsaQirV hpvtn FIXA_ECOLI : 22- 29: tcykc Vp-De-QdiA vnnad FIXA_RHILE : 10- 18: vcikq Vp-DsaQirV FIXA_RHILP : 10- 18: icikq Vp-DsaQirV dpvtn FIXA_RHIME : 10- 18: vcikq Vp-DsaQirV hpvtn F 6: 13.4279 10( 8) K-x(1,2)-V-x(1,2)-D-x-[ANQST] Occurences: 10(8) ETFB_HUMAN : 11- 17: vlvav Kr-Vi-DyA vkirv ETFB_HUMAN : 19- 27: idyav KirVkpDrT gvvtd ETFB_PARDE : 16- 24: idynv KarVksDgS gvdla ETFB_YEAST : 14- 20: ilvpv Kr-Vv-DfQ ikprv FIXA_AZOCA : 8- 14: ivvci Kq-Vp-DsA qirvh FIXA_ECOLI : 20- 26: iitcy Kc-Vp-DeQ diavn FIXA_RHILE : 8- 14: ivvci Kq-Vp-DsA qirv FIXA_RHILP : 8- 14: ivici Kq-Vp-DsA qirvd FIXA_RHILP : 148- 155: ltyva Ki-VsvDiN greit FIXA_RHIME : 8- 14: lvvci Kq-Vp-DsA qirvh G 7: 12.0102 9( 8) P-x(3,4)-I-x-V Occurences: 9(8) ETFB_HUMAN : 40- 46: khsmn Pfce-IaV eeavr ETFB_PARDE : 37- 43: kmsmn Pfde-IaV eeair ETFB_YEAST : 43- 49: kfsin Pfdd-IaV eeair FIXA_AZOCA : 11- 18: cikqv PdsaqIrV hpvtn FIXA_ECOLI : 23- 30: cykcv PdeqdIaV nnadg FIXA_ECOLI : 93- 99: vlsrd Pdel-IvV iddqf FIXA_RHILE : 11- 18: cikqv PdsaqIrV FIXA_RHILP : 11- 18: cikqv PdsaqIrV dpvtn FIXA_RHIME : 11- 18: cikqv PdsaqIrV hpvtn H 8: 11.5102 10( 8) D-x(1,3)-I-x-V Occurences: 10(8) ETFB_HUMAN : 84- 89: lamga Drg-IhV evppa ETFB_PARDE : 39- 43: smnpf De--IaV eeair ETFB_PARDE : 81- 86: lamga Dra-IlV vaadd ETFB_YEAST : 45- 49: sinpf Dd--IaV eeair FIXA_AZOCA : 12- 18: ikqvp DsaqIrV hpvtn FIXA_ECOLI : 24- 30: ykcvp DeqdIaV nnadg FIXA_ECOLI : 94- 99: lsrdp Del-IvV iddqf FIXA_RHILE : 12- 18: ikqvp DsaqIrV FIXA_RHILP : 12- 18: ikqvp DsaqIrV dpvtn FIXA_RHIME : 12- 18: ikqvp DsaqIrV hpvtn I 9: 11.5102 13( 8) I-x(1,2)-V-x(2,3)-A Occurences: 13(8) ETFB_HUMAN : 44- 49: npfce Ia-Vee-A vrlke ETFB_PARDE : 41- 46: npfde Ia-Vee-A irlke ETFB_PARDE : 63- 68: iiavs Ig-Vkq-A aetlr ETFB_PARDE : 63- 69: iiavs Ig-VkqaA etlrt ETFB_PARDE : 84- 89: gadra Il-Vva-A ddvqq ETFB_PARDE : 170- 176: gglqt Ia-VslpA vvtad ETFB_YEAST : 47- 52: npfdd Ia-Vee-A irike FIXA_AZOCA : 7- 14: hivvc IkqVpdsA qirvh FIXA_AZOCA : 151- 157: tyvak IanVdl-A grsiq FIXA_ECOLI : 28- 33: pdeqd Ia-Vnn-A dgsld FIXA_RHILE : 7- 14: hivvc IkqVpdsA qirv FIXA_RHILP : 7- 14: hivic IkqVpdsA qirvd FIXA_RHIME : 7- 14: hlvvc IkqVpdsA qirvh FIXA_RHIME : 161- 167: aasre It-VerrA eggsq J 10: 11.0102 9( 8) D-x(2,3)-I-x(1,3)-V Occurences: 9(8) ETFB_HUMAN : 84- 89: lamga Drg-Ih--V evppa ETFB_HUMAN : 84- 91: lamga Drg-IhveV ppaea ETFB_PARDE : 81- 86: lamga Dra-Il--V vaadd ETFB_PARDE : 81- 87: lamga Dra-Ilv-V aaddv ETFB_YEAST : 18- 25: vkrvv Dfq-IkprV nktlt FIXA_AZOCA : 12- 18: ikqvp DsaqIr--V hpvtn FIXA_ECOLI : 24- 30: ykcvp DeqdIa--V nnadg FIXA_ECOLI : 94- 99: lsrdp Del-Iv--V iddqf FIXA_RHILE : 12- 18: ikqvp DsaqIr--V FIXA_RHILP : 12- 18: ikqvp DsaqIr--V dpvtn FIXA_RHIME : 12- 18: ikqvp DsaqIr--V hpvtn K 11: 11.0102 9( 8) P-x(2,3)-A-x(3,5)-V Occurences: 9(8) ETFB_HUMAN : 231- 239: svedp PqrtAgvk--V etted ETFB_PARDE : 98- 108: qqdie PlavAkilaaV araeg ETFB_YEAST : 104- 114: kenie PlaiAkilkaV vekkg FIXA_AZOCA : 11- 18: cikqv Pds-Aqir--V hpvtn FIXA_AZOCA : 238- 248: krvfa PsarAekatmV dfset FIXA_ECOLI : 185- 192: etlsi Plp-Avva--V stdin FIXA_RHILE : 11- 18: cikqv Pds-Aqir--V FIXA_RHILP : 11- 18: cikqv Pds-Aqir--V dpvtn FIXA_RHIME : 11- 18: cikqv Pds-Aqir--V hpvtn L 12: 11.0102 10( 8) Q-x(3,4)-A-x(2,4)-V Occurences: 10(8) ETFB_HUMAN : 146- 153: fldwp Qgtf-Asq--V tlegd ETFB_PARDE : 143- 150: ilgwa Qatf-Ask--V eiega ETFB_YEAST : 149- 156: llnwp Qatn-Aak--V efldn FIXA_AZOCA : 9- 18: vvcik QvpdsAqir-V hpvtn FIXA_AZOCA : 144- 154: rlgll QltyvAkianV dlagr FIXA_ECOLI : 59- 69: ieaac QlkqqAaeaqV talsv FIXA_RHILE : 9- 18: vvcik QvpdsAqir-V FIXA_RHILP : 9- 18: vicik QvpdsAqir-V dpvtn FIXA_RHILP : 142- 150: rldll QltyvAki--V svdin FIXA_RHILP : 142- 152: rldll QltyvAkivsV dingr FIXA_RHIME : 9- 18: vvcik QvpdsAqir-V hpvtn M 13: 11.0102 9( 8) V-x(0,1)-V-x(1,3)-I Occurences: 9(8) ETFB_HUMAN : 8- 14: elrvl VaVkrvI dyavk ETFB_PARDE : 5- 11: mkvl VpVkrlI dynvk ETFB_YEAST : 16- 21: vpvkr V-VdfqI kprvn ETFB_YEAST : 164- 170: ldngr VqVtreI ddgee FIXA_AZOCA : 4- 7: mhi V-Vc--I kqvpd FIXA_ECOLI : 190- 196: plpav VaVstdI nspqi FIXA_RHILE : 4- 7: mhi V-Vc--I kqvpd FIXA_RHILP : 150- 154: yvaki VsVd--I ngrei FIXA_RHIME : 4- 7: mhl V-Vc--I kqvpd N 14: 11.0102 12( 8) I-x(0,1)-V-x(0,2)-V Occurences: 12(8) ETFB_HUMAN : 87- 91: gadrg IhVe-V ppaea ETFB_PARDE : 84- 87: gadra IlV--V aaddv ETFB_PARDE : 234- 239: grkag IkVgsV delvg ETFB_YEAST : 9- 13: kqqlr IlVp-V krvvd FIXA_AZOCA : 3- 5: mh I-V--V cikqv FIXA_AZOCA : 16- 21: pdsaq IrVhpV tntim FIXA_AZOCA : 231- 235: rgspt I-VkrV fapsa FIXA_ECOLI : 97- 99: dpdel I-V--V iddqf FIXA_RHILE : 3- 5: mh I-V--V cikqv FIXA_RHILP : 16- 21: pdsaq IrVdpV tntim FIXA_RHILP : 149- 152: tyvak I-Vs-V dingr FIXA_RHIME : 16- 21: pdsaq IrVhpV tntim O 15: 10.5102 14( 8) A-x(2,4)-R-x(0,2)-V Occurences: 14(8) ETFB_HUMAN : 2- 6: m Ael--R--V lvavk ETFB_HUMAN : 2- 8: m Ael--RvlV avkrv ETFB_HUMAN : 9- 13: lrvlv Avk--R--V idyav ETFB_HUMAN : 17- 22: rvidy Avki-R--V kpdrt ETFB_PARDE : 157- 163: iegak Akvt-Re-V dgglq ETFB_YEAST : 3- 11: ms AkqqlRilV pvkrv FIXA_AZOCA : 14- 18: qvpds Aqi--R--V hpvtn FIXA_AZOCA : 199- 207: gamad AlraaRaeV viwsa FIXA_ECOLI : 82- 88: kaltn Akg--RkdV lsrdp FIXA_ECOLI : 261- 267: qiaaf Aenl-Rk-V i FIXA_RHILE : 14- 18: qvpds Aqi--R--V FIXA_RHILP : 14- 18: qvpds Aqi--R--V dpvtn FIXA_RHILP : 262- 270: aeeli AgiflRsgV esela FIXA_RHIME : 14- 18: qvpds Aqi--R--V hpvtn FIXA_RHIME : 199- 207: grldd AlraaRtkV vkwsa P 16: 10.5102 10( 8) D-x(1,3)-Q-x(2,4)-V Occurences: 10(8) ETFB_HUMAN : 229- 237: visve Dpp-QrtagV kvett ETFB_PARDE : 164- 172: vtrev DgglQtia-V slpav ETFB_YEAST : 18- 25: vkrvv Df--QikprV nktlt FIXA_AZOCA : 12- 18: ikqvp Dsa-Qir--V hpvtn FIXA_ECOLI : 24- 30: ykcvp De--Qdia-V nnadg FIXA_RHILE : 12- 18: ikqvp Dsa-Qir--V FIXA_RHILP : 12- 18: ikqvp Dsa-Qir--V dpvtn FIXA_RHILP : 139- 146: iakrl Dll-Qlty-V akivs FIXA_RHIME : 12- 18: ikqvp Dsa-Qir--V hpvtn FIXA_RHIME : 141- 148: iakrl Dlq-Qlty-V akils FIXA_RHIME : 141- 148: iakrl Dl--QqltyV akils Q 17: 10.5102 15( 8) V-x(1,3)-I-x(1,3)-P Occurences: 15(8) ETFB_HUMAN : 18- 24: vidya Vk--IrvkP drtgv ETFB_PARDE : 92- 98: vaadd VqqdIe--P lavak ETFB_YEAST : 17- 23: pvkrv VdfqIk--P rvnkt FIXA_AZOCA : 4- 11: mhi Vvc-IkqvP dsaqi FIXA_AZOCA : 5- 11: mhiv Vc--IkqvP dsaqi FIXA_AZOCA : 30- 36: imrqg VptiIn--P ydlfa FIXA_AZOCA : 30- 36: imrqg Vpt-Iin-P ydlfa FIXA_ECOLI : 146- 153: qvgll Vge-IlniP avngv FIXA_ECOLI : 192- 199: pavva VstdIns-P qipsm FIXA_RHILE : 4- 11: mhi Vvc-IkqvP dsaqi FIXA_RHILE : 5- 11: mhiv Vc--IkqvP dsaqi FIXA_RHILP : 4- 11: mhi Vic-IkqvP dsaqi FIXA_RHILP : 30- 36: imrqg VptiIn--P ydlfa FIXA_RHILP : 30- 36: imrqg Vpt-Iin-P ydlfa FIXA_RHIME : 4- 11: mhl Vvc-IkqvP dsaqi FIXA_RHIME : 5- 11: mhlv Vc--IkqvP dsaqi FIXA_RHIME : 30- 36: imrqg VptiIn--P hdlaa FIXA_RHIME : 30- 36: imrqg Vpt-Iin-P hdlaa R 18: 8.3401 25( 8) I-x-V Occurences: 25(8) ETFB_HUMAN : 20- 22: dyavk IrV kpdrt ETFB_HUMAN : 44- 46: npfce IaV eeavr ETFB_HUMAN : 62- 64: lvkev IaV scgpa ETFB_HUMAN : 87- 89: gadrg IhV evppa ETFB_HUMAN : 206- 208: akkkk IeV ikpgd ETFB_HUMAN : 225- 227: sklsv IsV edppq ETFB_PARDE : 41- 43: npfde IaV eeair ETFB_PARDE : 59- 61: qaeei IaV sigvk ETFB_PARDE : 63- 65: iiavs IgV kqaae ETFB_PARDE : 84- 86: gadra IlV vaadd ETFB_PARDE : 170- 172: gglqt IaV slpav ETFB_PARDE : 234- 236: grkag IkV gsvde ETFB_YEAST : 9- 11: kqqlr IlV pvkrv ETFB_YEAST : 47- 49: npfdd IaV eeair FIXA_AZOCA : 3- 5: mh IvV cikqv FIXA_AZOCA : 16- 18: pdsaq IrV hpvtn FIXA_AZOCA : 161- 163: lagrs IqV errse FIXA_ECOLI : 28- 30: pdeqd IaV nnadg FIXA_ECOLI : 97- 99: dpdel IvV iddqf FIXA_RHILE : 3- 5: mh IvV cikqv FIXA_RHILE : 16- 18: pdsaq IrV FIXA_RHILP : 16- 18: pdsaq IrV dpvtn FIXA_RHILP : 159- 161: ingre ItV errse FIXA_RHIME : 16- 18: pdsaq IrV hpvtn FIXA_RHIME : 161- 163: aasre ItV errae S 19: 8.3401 14( 8) A-Q Occurences: 14(8) ETFB_HUMAN : 69- 70: vscgp AQ cqeti ETFB_PARDE : 142- 143: ailgw AQ atfas ETFB_YEAST : 76- 77: igsak AQ dilrn FIXA_AZOCA : 14- 15: qvpds AQ irvhp FIXA_AZOCA : 130- 131: idgdt AQ vgpgi FIXA_ECOLI : 67- 68: qqaae AQ vtals FIXA_ECOLI : 120- 121: alaaa AQ kagfd FIXA_ECOLI : 139- 140: ssdly AQ qvgll FIXA_RHILE : 14- 15: qvpds AQ irv FIXA_RHILP : 14- 15: qvpds AQ irvdp FIXA_RHILP : 128- 129: idgdt AQ vgpgi FIXA_RHIME : 14- 15: qvpds AQ irvhp FIXA_RHIME : 102- 103: tsfal AQ aiaei FIXA_RHIME : 130- 131: idgdt AQ vgpgi T 20: 8.3401 25( 8) D-x-A Occurences: 25(8) ETFB_HUMAN : 15- 17: vkrvi DyA vkirv ETFB_PARDE : 27- 29: dgsgv DlA nvkms ETFB_PARDE : 81- 83: lamga DrA ilvva ETFB_PARDE : 214- 216: adygv DvA prlev ETFB_YEAST : 46- 48: inpfd DiA veeai ETFB_YEAST : 214- 216: piekl DiA kdfpe FIXA_AZOCA : 12- 14: ikqvp DsA qirvh FIXA_AZOCA : 79- 81: ltfga DrA vlltd FIXA_AZOCA : 128- 130: qtidg DtA qvgpg FIXA_AZOCA : 155- 157: kianv DlA grsiq FIXA_AZOCA : 273- 275: pkled DlA alarg FIXA_ECOLI : 27- 29: vpdeq DiA vnnad FIXA_RHILE : 12- 14: ikqvp DsA qirv FIXA_RHILP : 12- 14: ikqvp DsA qirvd FIXA_RHILP : 77- 79: altva DrA vllte FIXA_RHILP : 126- 128: qtidg DtA qvgpg FIXA_RHILP : 195- 197: rrgsl DdA lraar FIXA_RHILP : 247- 249: kaeqi DtA ektpr FIXA_RHILP : 255- 257: ektpr DlA eelia FIXA_RHIME : 12- 14: ikqvp DsA qirvh FIXA_RHIME : 38- 40: iinph DlA aleea FIXA_RHIME : 128- 130: qtidg DtA qvgpg FIXA_RHIME : 155- 157: kilsi DaA sreit FIXA_RHIME : 186- 188: lvtml DgA dairr FIXA_RHIME : 197- 199: rrgrl DdA lraar Number of patterns evaluated by Pratt:179 Total running time: 0 seconds