------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file ER_LUMEN_RECEPTOR_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ER_LUMEN_RECEPTOR_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ER21_HUMAN 212 ER22_HUMAN 212 ERD2_ARATH 215 ERD2_BOVIN 212 ERD2_CAEEL 213 ERD2_KLULA 219 ERD2_PLAFA 221 ERD2_YEAST 219 Pratt run started at Thu Feb 6 19:27:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 50.0406 8( 8) W-x-F-S-x(2)-L-E-x-V-A-I-L-P-Q-L 2: 45.8706 8( 8) F-S-x(2)-L-E-x-V-A-I-L-P-Q-L 3: 41.7005 8( 8) S-x(2)-L-E-x-V-A-I-L-P-Q-L 4: 41.2005 8( 8) Y-x(4)-G-x-Y-R-x(2)-Y-x(2)-N-W-I-x-R-x(0,1)-Y 5: 40.7005 8( 8) G-I-S-x(3)-Q-x-L-x(2,3)-V-x(0,1)-F-x(2)-R-Y-x(2)-L 6: 37.5305 8( 8) L-E-x-V-A-I-L-P-Q-L 7: 37.5305 8( 8) I-S-x(3)-Q-x-L-x(3)-V-F-x(2)-R-Y-x(2)-L 8: 37.0305 8( 8) G-x-Y-R-x(2)-Y-x(2)-N-W-I-x-R-x(0,1)-Y 9: 37.0305 8( 8) I-S-x(2,3)-Q-x-L-x(3)-V-F-x(2)-R-Y-x(2)-L 10: 36.5305 8( 8) G-x(2)-Q-T-x(0,1)-L-x(0,1)-Y-x-D-F-F-Y 11: 36.5305 8( 8) I-S-x(3)-Q-x-L-x(2,3)-V-x(0,1)-F-x(2)-R-Y-x(2)-L 12: 36.0305 10( 8) L-x(0,2)-Y-R-x(2)-Y-x(2)-N-W-I-x-R-x(0,1)-Y 13: 33.3604 8( 8) E-x-V-A-I-L-P-Q-L 14: 32.8604 8( 8) Y-R-x(2)-Y-x(2)-N-W-I-x-R-x(0,1)-Y 15: 32.3604 8( 8) Q-T-x(0,1)-L-x(0,1)-Y-x-D-F-F-Y 16: 32.3604 8( 8) S-x(3)-Q-x-L-x(2,3)-V-x(0,1)-F-x(2)-R-Y-x(2)-L 17: 31.8604 8( 8) Y-x(2)-L-x(0,2)-F-x(3,4)-S-x-Y-N-x(2)-M-K 18: 31.8604 8( 8) R-x(3)-L-x(0,2)-F-x(3,4)-S-x-Y-N-x(2)-M-K 19: 31.8604 8( 8) N-x-F-R-x(3)-D-x(2)-H-L-x(2,4)-I-x(0,1)-L 20: 31.8604 8( 8) M-x(0,1)-N-x-F-R-x(3)-D-x(2)-H-L-x(2,4)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 145.5471 8( 8) W-[AST]-F-S-[ILV]-[WY]-L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R B 2: 141.9573 8( 8) F-S-[ILV]-[WY]-L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY] C 3: 137.7872 8( 8) S-[ILV]-[WY]-L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY] D 4: 133.4326 8( 8) L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY]-x(2)-[DE]-[DEG] E 5: 129.2625 8( 8) E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY]-x(2)-[DE]-[DEG] F 6: 107.8928 8( 8) N-[ILPV]-F-R-[FIL]-x-[AG]-D-[FILM]-x-H-L-x(2,4)-I-x(0,1)-L-[IL]-x(2)-[IL]-x(2)-[ST]-x(4)-G-I-S-x-[KR]-x-Q-x-L-[FY]-x-[ILV]-V-F-x-[ACT]-R-Y-[IL]-[DN] G 7: 65.2208 8( 8) Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] H 8: 63.8141 8( 8) R-Y-[IL]-[DN]-L-x(0,2)-F-x(3,4)-S-[FL]-Y-N-x(2)-M-K-[IV]-x-[FY]-[IL]-x-[ACST]-x(4)-[IV]-x(2)-[ILM] I 9: 61.8297 8( 8) G-I-S-x-[KR]-x-Q-x-L-x(2,3)-V-x(0,1)-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] J 10: 61.2578 8( 8) I-S-x(3)-Q-x-L-[FY]-x-[ILV]-V-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] K 11: 60.7578 8( 8) I-S-x(2,3)-Q-x-L-[FY]-x-[ILV]-V-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] L 12: 59.6440 8( 8) Y-[IL]-[DN]-L-x(0,2)-F-x(3,4)-S-[FL]-Y-N-x(2)-M-K-[IV]-x-[FY]-[IL]-x-[ACST]-x(4)-[IV]-x(2)-[ILM] M 13: 57.6596 8( 8) I-S-x-[KR]-x-Q-x-L-x(2,3)-V-x(0,1)-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] N 14: 53.4896 8( 8) S-x-[KR]-x-Q-x-L-x(2,3)-V-x(0,1)-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] O 15: 52.1885 8( 8) G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] P 16: 51.1885 10( 8) L-x(0,2)-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] Q 17: 49.8304 8( 8) M-x(0,1)-N-[ILPV]-F-R-[FIL]-x-[AG]-D-[FILM]-x-H-L-x(2,4)-I-L-[IL] R 18: 48.0185 8( 8) Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] S 19: 45.0386 8( 8) G-[ILV]-[ILV]-Q-T-x(0,1)-L-x(0,1)-Y-x-D-F-F-Y-x-[FY] T 20: 35.5449 8( 8) Q-T-x(0,1)-L-x(0,1)-Y-x-D-F-F-Y-x-[FY] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 145.5471 8( 8) W-[AST]-F-S-[ILV]-[WY]-L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R Occurences: 8(8) ER21_HUMAN : 120- 169: pleil WTFSIYLESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWR yhfeg ER22_HUMAN : 120- 169: pleil WTFSIYLESVAILPQLfMISkTgeAEtITThYLFfLGlYRALYLvNWIWR fyfeg ERD2_ARATH : 122- 171: vqevf WAFSIYLEAVAILPQLvLLQrSgnVDnLTGqYVVfLGaYRGLYIiNWIYR yfted ERD2_BOVIN : 120- 169: pleil WTFSIYLESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWR yhfeg ERD2_CAEEL : 120- 169: pfell WTFSIYLEAVAILPQLfLLQsTgsAEvITAhYLFaLGsYRALYIfNWIYR yyted ERD2_KLULA : 126- 175: fiqic WSFSLWLESVAILPQLfMLTkTgkAKqLTShYIFaLGlYRALYIpNWIWR yytee ERD2_PLAFA : 123- 172: lynil WSFSIWLESVAILPQLvLLEkQreVEnITShYVItMGlYRAFYIlNWIYR yffdd ERD2_YEAST : 126- 175: flela WSFSVWLESVAILPQLyMLSkGgkTRsLTVhYIFaMGlYRALYIpNWIWR ysted B 2: 141.9573 8( 8) F-S-[ILV]-[WY]-L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY] Occurences: 8(8) ER21_HUMAN : 122- 170: eilwt FSIYLESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRY hfegf ER22_HUMAN : 122- 170: eilwt FSIYLESVAILPQLfMISkTgeAEtITThYLFfLGlYRALYLvNWIWRF yfegf ERD2_ARATH : 124- 172: evfwa FSIYLEAVAILPQLvLLQrSgnVDnLTGqYVVfLGaYRGLYIiNWIYRY ftedh ERD2_BOVIN : 122- 170: eilwt FSIYLESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRY hfegf ERD2_CAEEL : 122- 170: ellwt FSIYLEAVAILPQLfLLQsTgsAEvITAhYLFaLGsYRALYIfNWIYRY ytedy ERD2_KLULA : 128- 176: qicws FSLWLESVAILPQLfMLTkTgkAKqLTShYIFaLGlYRALYIpNWIWRY yteer ERD2_PLAFA : 125- 173: nilws FSIWLESVAILPQLvLLEkQreVEnITShYVItMGlYRAFYIlNWIYRY ffddk ERD2_YEAST : 128- 176: elaws FSVWLESVAILPQLyMLSkGgkTRsLTVhYIFaMGlYRALYIpNWIWRY stedk C 3: 137.7872 8( 8) S-[ILV]-[WY]-L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY] Occurences: 8(8) ER21_HUMAN : 123- 170: ilwtf SIYLESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRY hfegf ER22_HUMAN : 123- 170: ilwtf SIYLESVAILPQLfMISkTgeAEtITThYLFfLGlYRALYLvNWIWRF yfegf ERD2_ARATH : 125- 172: vfwaf SIYLEAVAILPQLvLLQrSgnVDnLTGqYVVfLGaYRGLYIiNWIYRY ftedh ERD2_BOVIN : 123- 170: ilwtf SIYLESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRY hfegf ERD2_CAEEL : 123- 170: llwtf SIYLEAVAILPQLfLLQsTgsAEvITAhYLFaLGsYRALYIfNWIYRY ytedy ERD2_KLULA : 129- 176: icwsf SLWLESVAILPQLfMLTkTgkAKqLTShYIFaLGlYRALYIpNWIWRY yteer ERD2_PLAFA : 126- 173: ilwsf SIWLESVAILPQLvLLEkQreVEnITShYVItMGlYRAFYIlNWIYRY ffddk ERD2_YEAST : 129- 176: lawsf SVWLESVAILPQLyMLSkGgkTRsLTVhYIFaMGlYRALYIpNWIWRY stedk D 4: 133.4326 8( 8) L-E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY]-x(2)-[DE]-[DEG] Occurences: 8(8) ER21_HUMAN : 126- 174: tfsiy LESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRYhfEG ffdli ER22_HUMAN : 126- 174: tfsiy LESVAILPQLfMISkTgeAEtITThYLFfLGlYRALYLvNWIWRFyfEG ffdli ERD2_ARATH : 128- 176: afsiy LEAVAILPQLvLLQrSgnVDnLTGqYVVfLGaYRGLYIiNWIYRYftED hftrw ERD2_BOVIN : 126- 174: tfsiy LESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRYhfEG ffdli ERD2_CAEEL : 126- 174: tfsiy LEAVAILPQLfLLQsTgsAEvITAhYLFaLGsYRALYIfNWIYRYytED yfdpi ERD2_KLULA : 132- 180: sfslw LESVAILPQLfMLTkTgkAKqLTShYIFaLGlYRALYIpNWIWRYytEE rfdkl ERD2_PLAFA : 129- 177: sfsiw LESVAILPQLvLLEkQreVEnITShYVItMGlYRAFYIlNWIYRYffDD kpyin ERD2_YEAST : 132- 180: sfsvw LESVAILPQLyMLSkGgkTRsLTVhYIFaMGlYRALYIpNWIWRYstED kkldk E 5: 129.2625 8( 8) E-[AS]-V-A-I-L-P-Q-L-x-[LM]-[ILV]-[EQST]-x-[GQST]-x(2)-[ATV]-[DEKR]-x-[IL]-T-[AGSTV]-x-Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-[FY]-x(2)-[DE]-[DEG] Occurences: 8(8) ER21_HUMAN : 127- 174: fsiyl ESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRYhfEG ffdli ER22_HUMAN : 127- 174: fsiyl ESVAILPQLfMISkTgeAEtITThYLFfLGlYRALYLvNWIWRFyfEG ffdli ERD2_ARATH : 129- 176: fsiyl EAVAILPQLvLLQrSgnVDnLTGqYVVfLGaYRGLYIiNWIYRYftED hftrw ERD2_BOVIN : 127- 174: fsiyl ESVAILPQLfMVSkTgeAEtITShYLFaLGvYRTLYLfNWIWRYhfEG ffdli ERD2_CAEEL : 127- 174: fsiyl EAVAILPQLfLLQsTgsAEvITAhYLFaLGsYRALYIfNWIYRYytED yfdpi ERD2_KLULA : 133- 180: fslwl ESVAILPQLfMLTkTgkAKqLTShYIFaLGlYRALYIpNWIWRYytEE rfdkl ERD2_PLAFA : 130- 177: fsiwl ESVAILPQLvLLEkQreVEnITShYVItMGlYRAFYIlNWIYRYffDD kpyin ERD2_YEAST : 133- 180: fsvwl ESVAILPQLyMLSkGgkTRsLTVhYIFaMGlYRALYIpNWIWRYstED kkldk F 6: 107.8928 8( 8) N-[ILPV]-F-R-[FIL]-x-[AG]-D-[FILM]-x-H-L-x(2,4)-I-x(0,1)-L-[IL]-x(2)-[IL]-x(2)-[ST]-x(4)-G-I-S-x-[KR]-x-Q-x-L-[FY]-x-[ILV]-V-F-x-[ACT]-R-Y-[IL]-[DN] Occurences: 8(8) ER21_HUMAN : 2- 50: m NLFRFlGDLsHLlai-IlLLlkIwkSrscaGISgKsQvLFaVVFtARYLD lftny ER22_HUMAN : 2- 50: m NIFRLtGDLsHLaaivI-LLlkIwkTrscaGISgKsQlLFaLVFtTRYLD lftsf ERD2_ARATH : 2- 50: m NIFRFaGDMsHLisvlI-LLlkIyaTkscaGISlKtQeLYaLVFlTRYLD lftdy ERD2_BOVIN : 2- 50: m NLFRFlGDLsHLlai-IlLLlkIwkSrscaGISgKsQvLFaVVFtARYLD lftny ERD2_CAEEL : 2- 50: m NIFRIsADMsHLlaiiI-LLlkIwkSrscsGISaRsQiLFaLVFtARYLD lfsty ERD2_CAEEL : 2- 50: m NIFRIsADMsHLlai-IiLLlkIwkSrscsGISaRsQiLFaLVFtARYLD lfsty ERD2_KLULA : 3- 51: ml NVFRIaGDFsHLasiiI-LIqsIttSnsvdGISlKtQlLYtLVFiTRYLN lftkw ERD2_KLULA : 3- 51: ml NVFRIaGDFsHLasi-IiLIqsIttSnsvdGISlKtQlLYtLVFiTRYLN lftkw ERD2_PLAFA : 2- 50: m NIFRLiGDIlHLvsmyI-LImkLkkSknciGIScRmQeLYlIVFlCRYID lffvf ERD2_YEAST : 2- 50: m NPFRIlGDLsHLtsilI-LIhnIktTryieGISfKtQtLYaLVFiTRYLD lltfh G 7: 65.2208 8( 8) Y-[ILV]-[FIV]-x-[LM]-G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] Occurences: 8(8) ER21_HUMAN : 151- 173: titsh YLFaLGvYRTLYLfNWIWR-YhfE gffdl ER22_HUMAN : 151- 174: titth YLFfLGlYRALYLvNWIWRfYfeG ffdli ERD2_ARATH : 153- 175: nltgq YVVfLGaYRGLYIiNWIYR-YftE dhftr ERD2_BOVIN : 151- 173: titsh YLFaLGvYRTLYLfNWIWR-YhfE gffdl ERD2_CAEEL : 151- 173: vitah YLFaLGsYRALYIfNWIYR-YytE dyfdp ERD2_CAEEL : 151- 174: vitah YLFaLGsYRALYIfNWIYRyYteD yfdpi ERD2_KLULA : 157- 179: qltsh YIFaLGlYRALYIpNWIWR-YytE erfdk ERD2_KLULA : 157- 180: qltsh YIFaLGlYRALYIpNWIWRyYteE rfdkl ERD2_PLAFA : 154- 176: nitsh YVItMGlYRAFYIlNWIYR-YffD dkpyi ERD2_YEAST : 157- 179: sltvh YIFaMGlYRALYIpNWIWR-YstE dkkld H 8: 63.8141 8( 8) R-Y-[IL]-[DN]-L-x(0,2)-F-x(3,4)-S-[FL]-Y-N-x(2)-M-K-[IV]-x-[FY]-[IL]-x-[ACST]-x(4)-[IV]-x(2)-[ILM] Occurences: 8(8) ER21_HUMAN : 47- 78: vvfta RYLDL--FtnyiSLYNtcMKVvYIaCsfttVwlI yskfk ER22_HUMAN : 47- 78: lvftt RYLDL--FtsfiSLYNtsMKViYLaCsyatVylI ylkfk ERD2_ARATH : 47- 78: lvflt RYLDL--FtdyvSLYNsiMKIvFIaSslaiVwcM rrhpl ERD2_BOVIN : 47- 78: vvfta RYLDL--FtnyiSLYNtcMKVvYIaCsfttVwlI yskfk ERD2_CAEEL : 47- 78: lvfta RYLDL--FstyiSLYNttMKItFLaAtyatVylM ffkfr ERD2_KLULA : 48- 79: lvfit RYLNL--FtkwtSLYNflMKIvFIsSsvyvIvlM rqqkf ERD2_PLAFA : 47- 78: ivflc RYIDLf-Fvfv-SFYNtvMKItFIlTiaytIylI rlklp ERD2_PLAFA : 47- 78: ivflc RYIDL--FfvfvSFYNtvMKItFIlTiaytIylI rlklp ERD2_YEAST : 47- 79: lvfit RYLDLltFhwv-SLYNalMKIfFIvStayiVvlL qgskr I 9: 61.8297 8( 8) G-I-S-x-[KR]-x-Q-x-L-x(2,3)-V-x(0,1)-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] Occurences: 8(8) ER21_HUMAN : 31- 57: srsca GISgKsQvLfavV-FtARYLDLFtnYiS lyntc ER21_HUMAN : 31- 57: srsca GISgKsQvLfa-VvFtARYLDLFtnYiS lyntc ER22_HUMAN : 31- 57: trsca GISgKsQlLfalV-FtTRYLDLFtsFiS lynts ERD2_ARATH : 31- 57: tksca GISlKtQeLyalV-FlTRYLDLFtdYvS lynsi ERD2_BOVIN : 31- 57: srsca GISgKsQvLfavV-FtARYLDLFtnYiS lyntc ERD2_BOVIN : 31- 57: srsca GISgKsQvLfa-VvFtARYLDLFtnYiS lyntc ERD2_CAEEL : 31- 57: srscs GISaRsQiLfalV-FtARYLDLFstYiS lyntt ERD2_KLULA : 32- 58: snsvd GISlKtQlLytlV-FiTRYLNLFtkWtS lynfl ERD2_PLAFA : 31- 57: sknci GIScRmQeLyliV-FlCRYIDLFfvFvS fyntv ERD2_YEAST : 31- 57: tryie GISfKtQtLyalV-FiTRYLDLLtfHwV slyna J 10: 61.2578 8( 8) I-S-x(3)-Q-x-L-[FY]-x-[ILV]-V-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] Occurences: 8(8) ER21_HUMAN : 32- 57: rscag ISgksQvLFaVVFtARYLDLFtnYiS lyntc ER22_HUMAN : 32- 57: rscag ISgksQlLFaLVFtTRYLDLFtsFiS lynts ERD2_ARATH : 32- 57: kscag ISlktQeLYaLVFlTRYLDLFtdYvS lynsi ERD2_BOVIN : 32- 57: rscag ISgksQvLFaVVFtARYLDLFtnYiS lyntc ERD2_CAEEL : 32- 57: rscsg ISarsQiLFaLVFtARYLDLFstYiS lyntt ERD2_KLULA : 33- 58: nsvdg ISlktQlLYtLVFiTRYLNLFtkWtS lynfl ERD2_PLAFA : 32- 57: kncig IScrmQeLYlIVFlCRYIDLFfvFvS fyntv ERD2_YEAST : 32- 57: ryieg ISfktQtLYaLVFiTRYLDLLtfHwV slyna K 11: 60.7578 8( 8) I-S-x(2,3)-Q-x-L-[FY]-x-[ILV]-V-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] Occurences: 8(8) ER21_HUMAN : 32- 57: rscag ISgksQvLFaVVFtARYLDLFtnYiS lyntc ER22_HUMAN : 32- 57: rscag ISgksQlLFaLVFtTRYLDLFtsFiS lynts ERD2_ARATH : 32- 57: kscag ISlktQeLYaLVFlTRYLDLFtdYvS lynsi ERD2_BOVIN : 32- 57: rscag ISgksQvLFaVVFtARYLDLFtnYiS lyntc ERD2_CAEEL : 32- 57: rscsg ISarsQiLFaLVFtARYLDLFstYiS lyntt ERD2_KLULA : 33- 58: nsvdg ISlktQlLYtLVFiTRYLNLFtkWtS lynfl ERD2_PLAFA : 32- 57: kncig IScrmQeLYlIVFlCRYIDLFfvFvS fyntv ERD2_YEAST : 32- 57: ryieg ISfktQtLYaLVFiTRYLDLLtfHwV slyna L 12: 59.6440 8( 8) Y-[IL]-[DN]-L-x(0,2)-F-x(3,4)-S-[FL]-Y-N-x(2)-M-K-[IV]-x-[FY]-[IL]-x-[ACST]-x(4)-[IV]-x(2)-[ILM] Occurences: 8(8) ER21_HUMAN : 48- 78: vftar YLDL--FtnyiSLYNtcMKVvYIaCsfttVwlI yskfk ER22_HUMAN : 48- 78: vfttr YLDL--FtsfiSLYNtsMKViYLaCsyatVylI ylkfk ERD2_ARATH : 48- 78: vfltr YLDL--FtdyvSLYNsiMKIvFIaSslaiVwcM rrhpl ERD2_BOVIN : 48- 78: vftar YLDL--FtnyiSLYNtcMKVvYIaCsfttVwlI yskfk ERD2_CAEEL : 48- 78: vftar YLDL--FstyiSLYNttMKItFLaAtyatVylM ffkfr ERD2_KLULA : 49- 79: vfitr YLNL--FtkwtSLYNflMKIvFIsSsvyvIvlM rqqkf ERD2_PLAFA : 48- 78: vflcr YIDLf-Fvfv-SFYNtvMKItFIlTiaytIylI rlklp ERD2_PLAFA : 48- 78: vflcr YIDL--FfvfvSFYNtvMKItFIlTiaytIylI rlklp ERD2_YEAST : 48- 79: vfitr YLDLltFhwv-SLYNalMKIfFIvStayiVvlL qgskr M 13: 57.6596 8( 8) I-S-x-[KR]-x-Q-x-L-x(2,3)-V-x(0,1)-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] Occurences: 8(8) ER21_HUMAN : 32- 57: rscag ISgKsQvLfavV-FtARYLDLFtnYiS lyntc ER21_HUMAN : 32- 57: rscag ISgKsQvLfa-VvFtARYLDLFtnYiS lyntc ER22_HUMAN : 32- 57: rscag ISgKsQlLfalV-FtTRYLDLFtsFiS lynts ERD2_ARATH : 32- 57: kscag ISlKtQeLyalV-FlTRYLDLFtdYvS lynsi ERD2_BOVIN : 32- 57: rscag ISgKsQvLfavV-FtARYLDLFtnYiS lyntc ERD2_BOVIN : 32- 57: rscag ISgKsQvLfa-VvFtARYLDLFtnYiS lyntc ERD2_CAEEL : 32- 57: rscsg ISaRsQiLfalV-FtARYLDLFstYiS lyntt ERD2_KLULA : 33- 58: nsvdg ISlKtQlLytlV-FiTRYLNLFtkWtS lynfl ERD2_PLAFA : 32- 57: kncig IScRmQeLyliV-FlCRYIDLFfvFvS fyntv ERD2_YEAST : 32- 57: ryieg ISfKtQtLyalV-FiTRYLDLLtfHwV slyna N 14: 53.4896 8( 8) S-x-[KR]-x-Q-x-L-x(2,3)-V-x(0,1)-F-x-[ACT]-R-Y-[IL]-[DN]-L-[FL]-x(2)-[FHWY]-x-[SV] Occurences: 8(8) ER21_HUMAN : 33- 57: scagi SgKsQvLfavV-FtARYLDLFtnYiS lyntc ER21_HUMAN : 33- 57: scagi SgKsQvLfa-VvFtARYLDLFtnYiS lyntc ER22_HUMAN : 33- 57: scagi SgKsQlLfalV-FtTRYLDLFtsFiS lynts ERD2_ARATH : 33- 57: scagi SlKtQeLyalV-FlTRYLDLFtdYvS lynsi ERD2_BOVIN : 33- 57: scagi SgKsQvLfavV-FtARYLDLFtnYiS lyntc ERD2_BOVIN : 33- 57: scagi SgKsQvLfa-VvFtARYLDLFtnYiS lyntc ERD2_CAEEL : 33- 57: scsgi SaRsQiLfalV-FtARYLDLFstYiS lyntt ERD2_KLULA : 34- 58: svdgi SlKtQlLytlV-FiTRYLNLFtkWtS lynfl ERD2_PLAFA : 33- 57: ncigi ScRmQeLyliV-FlCRYIDLFfvFvS fyntv ERD2_YEAST : 33- 57: yiegi SfKtQtLyalV-FiTRYLDLLtfHwV slyna O 15: 52.1885 8( 8) G-x-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] Occurences: 8(8) ER21_HUMAN : 156- 173: ylfal GvYRTLYLfNWIWR-YhfE gffdl ER22_HUMAN : 156- 174: ylffl GlYRALYLvNWIWRfYfeG ffdli ERD2_ARATH : 158- 175: yvvfl GaYRGLYIiNWIYR-YftE dhftr ERD2_BOVIN : 156- 173: ylfal GvYRTLYLfNWIWR-YhfE gffdl ERD2_CAEEL : 156- 173: ylfal GsYRALYIfNWIYR-YytE dyfdp ERD2_CAEEL : 156- 174: ylfal GsYRALYIfNWIYRyYteD yfdpi ERD2_KLULA : 162- 179: yifal GlYRALYIpNWIWR-YytE erfdk ERD2_KLULA : 162- 180: yifal GlYRALYIpNWIWRyYteE rfdkl ERD2_PLAFA : 159- 176: yvitm GlYRAFYIlNWIYR-YffD dkpyi ERD2_YEAST : 162- 179: yifam GlYRALYIpNWIWR-YstE dkkld P 16: 51.1885 10( 8) L-x(0,2)-Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] Occurences: 10(8) ER21_HUMAN : 155- 173: hylfa LgvYRTLYLfNWIWR-YhfE gffdl ER22_HUMAN : 155- 174: hylff LglYRALYLvNWIWRfYfeG ffdli ER22_HUMAN : 157- 174: lfflg L--YRALYLvNWIWRfYfeG ffdli ERD2_ARATH : 157- 175: qyvvf LgaYRGLYIiNWIYR-YftE dhftr ERD2_BOVIN : 155- 173: hylfa LgvYRTLYLfNWIWR-YhfE gffdl ERD2_CAEEL : 155- 173: hylfa LgsYRALYIfNWIYR-YytE dyfdp ERD2_CAEEL : 155- 174: hylfa LgsYRALYIfNWIYRyYteD yfdpi ERD2_KLULA : 161- 179: hyifa LglYRALYIpNWIWR-YytE erfdk ERD2_KLULA : 161- 180: hyifa LglYRALYIpNWIWRyYteE rfdkl ERD2_KLULA : 163- 179: ifalg L--YRALYIpNWIWR-YytE erfdk ERD2_KLULA : 163- 180: ifalg L--YRALYIpNWIWRyYteE rfdkl ERD2_PLAFA : 160- 176: vitmg L--YRAFYIlNWIYR-YffD dkpyi ERD2_YEAST : 163- 179: ifamg L--YRALYIpNWIWR-YstE dkkld Q 17: 49.8304 8( 8) M-x(0,1)-N-[ILPV]-F-R-[FIL]-x-[AG]-D-[FILM]-x-H-L-x(2,4)-I-L-[IL] Occurences: 8(8) ER21_HUMAN : 1- 19: M-NLFRFlGDLsHLlai-ILL llkiw ER22_HUMAN : 1- 20: M-NIFRLtGDLsHLaaivILL lkiwk ERD2_ARATH : 1- 20: M-NIFRFaGDMsHLisvlILL lkiya ERD2_BOVIN : 1- 19: M-NLFRFlGDLsHLlai-ILL llkiw ERD2_CAEEL : 1- 20: M-NIFRIsADMsHLlaiiILL lkiwk ERD2_KLULA : 1- 21: MlNVFRIaGDFsHLasiiILI qsitt ERD2_PLAFA : 1- 20: M-NIFRLiGDIlHLvsmyILI mklkk ERD2_YEAST : 1- 18: M-NPFRIlGDLsHLts--ILI lihni ERD2_YEAST : 1- 20: M-NPFRIlGDLsHLtsilILI hnikt R 18: 48.0185 8( 8) Y-R-[AGT]-[FL]-Y-[IL]-x-N-W-I-[WY]-R-x(0,1)-Y-x(2)-[DEG] Occurences: 8(8) ER21_HUMAN : 158- 173: falgv YRTLYLfNWIWR-YhfE gffdl ER22_HUMAN : 158- 174: fflgl YRALYLvNWIWRfYfeG ffdli ERD2_ARATH : 160- 175: vflga YRGLYIiNWIYR-YftE dhftr ERD2_BOVIN : 158- 173: falgv YRTLYLfNWIWR-YhfE gffdl ERD2_CAEEL : 158- 173: falgs YRALYIfNWIYR-YytE dyfdp ERD2_CAEEL : 158- 174: falgs YRALYIfNWIYRyYteD yfdpi ERD2_KLULA : 164- 179: falgl YRALYIpNWIWR-YytE erfdk ERD2_KLULA : 164- 180: falgl YRALYIpNWIWRyYteE rfdkl ERD2_PLAFA : 161- 176: itmgl YRAFYIlNWIYR-YffD dkpyi ERD2_YEAST : 164- 179: famgl YRALYIpNWIWR-YstE dkkld S 19: 45.0386 8( 8) G-[ILV]-[ILV]-Q-T-x(0,1)-L-x(0,1)-Y-x-D-F-F-Y-x-[FY] Occurences: 8(8) ER21_HUMAN : 184- 198: iaiva GLVQTvL-YcDFFYlY itkvl ER22_HUMAN : 184- 198: iavva GVVQTiL-YcDFFYlY itkvl ERD2_ARATH : 187- 201: iacvs GLVQTaL-YaDFFYyY yiswk ERD2_BOVIN : 184- 198: iaiva GLVQTvL-YcDFFYlY itkvl ERD2_CAEEL : 184- 198: ivvva GIVQTvL-YaDFFYlY vtrvv ERD2_KLULA : 190- 204: lsvft GVIQT-LvYsDFFYiY yqkvi ERD2_PLAFA : 189- 203: vgwig GLIQTlL-YiDFFYyF alakw ERD2_PLAFA : 189- 203: vgwig GLIQT-LlYiDFFYyF alakw ERD2_YEAST : 191- 205: iaffa GLLQTlL-YsDFFYiY ytkvi ERD2_YEAST : 191- 205: iaffa GLLQT-LlYsDFFYiY ytkvi T 20: 35.5449 8( 8) Q-T-x(0,1)-L-x(0,1)-Y-x-D-F-F-Y-x-[FY] Occurences: 8(8) ER21_HUMAN : 187- 198: vaglv QTvL-YcDFFYlY itkvl ER22_HUMAN : 187- 198: vagvv QTiL-YcDFFYlY itkvl ERD2_ARATH : 190- 201: vsglv QTaL-YaDFFYyY yiswk ERD2_BOVIN : 187- 198: vaglv QTvL-YcDFFYlY itkvl ERD2_CAEEL : 187- 198: vagiv QTvL-YaDFFYlY vtrvv ERD2_KLULA : 193- 204: ftgvi QT-LvYsDFFYiY yqkvi ERD2_PLAFA : 192- 203: iggli QTlL-YiDFFYyF alakw ERD2_PLAFA : 192- 203: iggli QT-LlYiDFFYyF alakw ERD2_YEAST : 194- 205: fagll QTlL-YsDFFYiY ytkvi ERD2_YEAST : 194- 205: fagll QT-LlYsDFFYiY ytkvi Number of patterns evaluated by Pratt:6028 Total running time: 2 seconds