------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file ERG4_ERG24_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ERG4_ERG24_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ER24_YEAST 438 ERG3_NEUCR 490 ERG4_YEAST 473 LBR_CHICK 637 STS1_SCHPO 453 Pratt run started at Thu Feb 6 19:26:52 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 57.3807 7( 5) T-x(1,2)-D-x(5)-F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 2: 57.3807 5( 5) V-x(1,2)-T-x(1,2)-D-x(5)-F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L 3: 57.3807 5( 5) V-x(0,1)-T-x(1,2)-D-x(5)-F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L 4: 57.3807 5( 5) V-x(3,4)-D-x(5)-F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 5: 56.8807 5( 5) L-x(3,5)-D-x(5)-F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 6: 56.3807 7( 5) E-x(1,3)-L-x(3,5)-D-x(5)-F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L 7: 53.7107 5( 5) D-x(5)-F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 8: 49.5406 5( 5) F-G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 9: 45.3706 7( 5) F-x(3,4)-L-x-H-R-x(2)-R-D-x(3)-C-x(2)-K-Y-G-x(5)-Y 10: 45.3706 5( 5) G-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 11: 44.8706 6( 5) F-x(2,3)-L-x(1,2)-H-R-x(2)-R-D-x(3)-C-x(2)-K-Y-G-x(5)-Y 12: 44.8706 7( 5) F-x(3,4)-L-x(0,1)-H-R-x(2)-R-D-x(3)-C-x(2)-K-Y-G-x(5)-Y 13: 44.8706 6( 5) F-x(2,3)-L-x(0,1)-H-R-x(2)-R-D-x(3)-C-x(2)-K-Y-G-x(5)-Y 14: 44.3706 8( 5) G-x(0,2)-F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 15: 43.8706 7( 5) T-x-D-x(3,5)-F-x(0,2)-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L 16: 41.2005 8( 5) L-x(1,2)-H-R-x(2)-R-D-x(3)-C-x(2)-K-Y-G-x(5)-Y 17: 41.2005 5( 5) F-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L-x(3,4)-P 18: 39.7005 5( 5) L-x-H-R-x(2)-R-D-x(2,4)-K-x(1,3)-K-Y-G-x(5)-Y 19: 39.7005 8( 5) D-x(3,5)-F-x(0,2)-M-L-x-F-x(5)-V-P-x(2)-Y-x(5)-Y-L 20: 37.0305 6( 5) L-x(1,2)-R-x(2)-R-D-x(3)-C-x(2)-K-Y-G-x(5)-Y Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 90.2746 5( 5) V-x(1,2)-T-x(1,2)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] B 2: 90.2746 5( 5) V-x(0,1)-T-x(1,2)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] C 3: 89.2746 7( 5) E-x(1,3)-L-x(3,5)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] D 4: 84.8652 7( 5) T-x(1,2)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P E 5: 84.8652 5( 5) V-x(3,4)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P F 6: 84.3652 5( 5) L-x(3,5)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P G 7: 81.1951 5( 5) D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P H 8: 73.5871 7( 5) F-x(3,4)-L-x-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] I 9: 73.0871 6( 5) F-x(2,3)-L-x(1,2)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] J 10: 73.0871 7( 5) F-x(3,4)-L-x(0,1)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] K 11: 73.0871 6( 5) F-x(2,3)-L-x(0,1)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] L 12: 69.4171 8( 5) L-x(1,2)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] M 13: 67.3494 5( 5) F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P N 14: 67.2835 5( 5) L-[ILV]-H-R-x(2)-R-D-x(2,4)-K-x(1,3)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] O 15: 67.0888 7( 5) T-x-D-x(3,5)-F-x(0,2)-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] P 16: 65.2470 6( 5) L-x(1,2)-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Q 17: 63.1794 5( 5) G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P R 18: 62.9187 8( 5) D-x(3,5)-F-x(0,2)-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] S 19: 62.1794 8( 5) G-x(0,2)-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P T 20: 59.0093 5( 5) F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 90.2746 5( 5) V-x(1,2)-T-x(1,2)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] Occurences: 5(5) ER24_YEAST : 268- 308: lneeg Vl-TmmDITtDgFGFMLaFgDLSlVPFtYSlqArYLsvsPvE lgwvk ERG3_NEUCR : 284- 324: ymepa VltTm-DITtDgFGFMLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG3_NEUCR : 284- 324: ymepa Vl-TtmDITtDgFGFMLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG4_YEAST : 284- 323: geeli Vp-Tw-DMAyEkFGFMLiFwNIAgVPYtYChcTlYLyyhDpS eyhws LBR_CHICK : 434- 474: wneea VltTm-DIThDgFGFMLaFgDLVwVPFvYSlqAfYLvghPiA iswpv LBR_CHICK : 434- 474: wneea Vl-TtmDIThDgFGFMLaFgDLVwVPFvYSlqAfYLvghPiA iswpv STS1_SCHPO : 264- 303: geqli Vp-Tw-DMAyEkFGFMLiFwNMAgVPFtYShcTlYLfshDpS vynws B 2: 90.2746 5( 5) V-x(0,1)-T-x(1,2)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] Occurences: 5(5) ER24_YEAST : 268- 308: lneeg VlTmmDITtDgFGFMLaFgDLSlVPFtYSlqArYLsvsPvE lgwvk ERG3_NEUCR : 284- 324: ymepa VlTtmDITtDgFGFMLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG4_YEAST : 284- 323: geeli VpTw-DMAyEkFGFMLiFwNIAgVPYtYChcTlYLyyhDpS eyhws LBR_CHICK : 434- 474: wneea VlTtmDIThDgFGFMLaFgDLVwVPFvYSlqAfYLvghPiA iswpv STS1_SCHPO : 264- 303: geqli VpTw-DMAyEkFGFMLiFwNMAgVPFtYShcTlYLfshDpS vynws C 3: 89.2746 7( 5) E-x(1,3)-L-x(3,5)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] Occurences: 7(5) ER24_YEAST : 265- 308: dgvln EegvLtmm--DITtDgFGFMLaFgDLSlVPFtYSlqArYLsvsPvE lgwvk ER24_YEAST : 266- 308: gvlne Egv-Ltmm--DITtDgFGFMLaFgDLSlVPFtYSlqArYLsvsPvE lgwvk ERG3_NEUCR : 281- 324: dgiym EpavLttm--DITtDgFGFMLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG4_YEAST : 280- 323: acakg Ee--LivptwDMAyEkFGFMLiFwNIAgVPYtYChcTlYLyyhDpS eyhws LBR_CHICK : 431- 474: dalwn EeavLttm--DIThDgFGFMLaFgDLVwVPFvYSlqAfYLvghPiA iswpv LBR_CHICK : 432- 474: alwne Eav-Lttm--DIThDgFGFMLaFgDLVwVPFvYSlqAfYLvghPiA iswpv STS1_SCHPO : 260- 303: acskg Eq--LivptwDMAyEkFGFMLiFwNMAgVPFtYShcTlYLfshDpS vynws D 4: 84.8652 7( 5) T-x(1,2)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 7(5) ER24_YEAST : 270- 306: eegvl TmmDITtDgFGFMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 286- 322: epavl TtmDITtDgFGFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG3_NEUCR : 287- 322: pavlt Tm-DITtDgFGFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 286- 322: elivp Tw-DMAyEkFGFMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 436- 472: eeavl TtmDIThDgFGFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw LBR_CHICK : 437- 472: eavlt Tm-DIThDgFGFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 266- 302: qlivp Tw-DMAyEkFGFMLiFwNMAgVPFtYShcTlYLfshdP svynw E 5: 84.8652 5( 5) V-x(3,4)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 5(5) ER24_YEAST : 268- 306: lneeg VltmmDITtDgFGFMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 284- 322: ymepa VlttmDITtDgFGFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 284- 322: geeli Vptw-DMAyEkFGFMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 434- 472: wneea VlttmDIThDgFGFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 264- 302: geqli Vptw-DMAyEkFGFMLiFwNMAgVPFtYShcTlYLfshdP svynw F 6: 84.3652 5( 5) L-x(3,5)-D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 5(5) ER24_YEAST : 269- 306: neegv Ltmm--DITtDgFGFMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 285- 322: mepav Lttm--DITtDgFGFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 282- 322: akgee LivptwDMAyEkFGFMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 435- 472: neeav Lttm--DIThDgFGFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 262- 302: skgeq LivptwDMAyEkFGFMLiFwNMAgVPFtYShcTlYLfshdP svynw G 7: 81.1951 5( 5) D-[IM]-[AT]-x-[DE]-x-F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 5(5) ER24_YEAST : 273- 306: vltmm DITtDgFGFMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 289- 322: vlttm DITtDgFGFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 288- 322: ivptw DMAyEkFGFMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 439- 472: vlttm DIThDgFGFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 268- 302: ivptw DMAyEkFGFMLiFwNMAgVPFtYShcTlYLfshdP svynw H 8: 73.5871 7( 5) F-x(3,4)-L-x-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Occurences: 7(5) ER24_YEAST : 399- 435: yysly Fatl-LlHRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ERG3_NEUCR : 451- 487: fyily Fail-LiHRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG4_YEAST : 433- 470: wffpv FflvvLiHRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf ERG4_YEAST : 434- 470: ffpvf Flvv-LiHRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf LBR_CHICK : 569- 605: fyviy Ficl-LvHReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle STS1_SCHPO : 413- 450: yfyps FffvvLvHRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif STS1_SCHPO : 414- 450: fypsf Ffvv-LvHRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif I 9: 73.0871 6( 5) F-x(2,3)-L-x(1,2)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Occurences: 6(5) ER24_YEAST : 399- 435: yysly FatlLl-HRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ER24_YEAST : 399- 435: yysly Fat-LllHRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ERG3_NEUCR : 451- 487: fyily FailLi-HRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG3_NEUCR : 451- 487: fyily Fai-LliHRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG4_YEAST : 434- 470: ffpvf FlvvLi-HRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf LBR_CHICK : 569- 605: fyviy FiclLv-HReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle LBR_CHICK : 569- 605: fyviy Fic-LlvHReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle STS1_SCHPO : 414- 450: fypsf FfvvLv-HRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif STS1_SCHPO : 415- 450: ypsff Fvv-Lv-HRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif J 10: 73.0871 7( 5) F-x(3,4)-L-x(0,1)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Occurences: 7(5) ER24_YEAST : 399- 435: yysly FatllL-HRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ER24_YEAST : 399- 435: yysly Fatl-LlHRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ERG3_NEUCR : 451- 487: fyily Fail-LiHRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG4_YEAST : 433- 470: wffpv FflvvLiHRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf ERG4_YEAST : 434- 470: ffpvf Flvv-LiHRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf LBR_CHICK : 569- 605: fyviy Ficl-LvHReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle STS1_SCHPO : 413- 450: yfyps FffvvLvHRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif STS1_SCHPO : 414- 450: fypsf Ffvv-LvHRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif K 11: 73.0871 6( 5) F-x(2,3)-L-x(0,1)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Occurences: 6(5) ER24_YEAST : 399- 435: yysly FatlLlHRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ERG3_NEUCR : 451- 487: fyily FailLiHRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG4_YEAST : 434- 470: ffpvf FlvvLiHRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf LBR_CHICK : 569- 605: fyviy FiclLvHReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle STS1_SCHPO : 414- 450: fypsf FfvvLvHRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif STS1_SCHPO : 415- 450: ypsff Fvv-LvHRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif L 12: 69.4171 8( 5) L-x(1,2)-H-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Occurences: 8(5) ER24_YEAST : 402- 435: lyfat LllHRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ER24_YEAST : 403- 435: yfatl Ll-HRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ERG3_NEUCR : 454- 487: lyfai LliHRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG3_NEUCR : 455- 487: yfail Li-HRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG4_YEAST : 438- 470: fflvv Li-HRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf LBR_CHICK : 572- 605: iyfic LlvHReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle LBR_CHICK : 573- 605: yficl Lv-HReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle STS1_SCHPO : 418- 450: fffvv Lv-HRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif M 13: 67.3494 5( 5) F-G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 5(5) ER24_YEAST : 279- 306: ittdg FGFMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 295- 322: ittdg FGFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 294- 322: mayek FGFMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 445- 472: ithdg FGFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 274- 302: mayek FGFMLiFwNMAgVPFtYShcTlYLfshdP svynw N 14: 67.2835 5( 5) L-[ILV]-H-R-x(2)-R-D-x(2,4)-K-x(1,3)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Occurences: 5(5) ER24_YEAST : 403- 435: yfatl LLHRqqRDeh--KcrlKYGeNWEEYerkVpYkiIP yvy ERG3_NEUCR : 455- 487: yfail LIHRdlRDde--KcskKYGdDWEKYkklVkWriVP giy ERG4_YEAST : 438- 470: fflvv LIHRafRDqakcKr--KYGkDWDEYckhCpYvfIP yvf ERG4_YEAST : 438- 470: fflvv LIHRafRDqa--KckrKYGkDWDEYckhCpYvfIP yvf LBR_CHICK : 573- 605: yficl LVHReaRDehhcKk--KYGlAWERYcqrVpYthIS lhlle STS1_SCHPO : 418- 450: fffvv LVHRvsRDikkcKa--KYGaDFDEYcriCpYlfIP yif STS1_SCHPO : 418- 450: fffvv LVHRvsRDik--KckaKYGaDFDEYcriCpYlfIP yif O 15: 67.0888 7( 5) T-x-D-x(3,5)-F-x(0,2)-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] Occurences: 7(5) ER24_YEAST : 275- 308: tmmdi TtDgfg--F--MLaFgDLSlVPFtYSlqArYLsvsPvE lgwvk ERG3_NEUCR : 287- 324: pavlt TmDittdgFgfMLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG3_NEUCR : 291- 324: ttmdi TtDgfg--F--MLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG4_YEAST : 286- 323: elivp TwDmayekFgfMLiFwNIAgVPYtYChcTlYLyyhDpS eyhws LBR_CHICK : 437- 474: eavlt TmDithdgFgfMLaFgDLVwVPFvYSlqAfYLvghPiA iswpv LBR_CHICK : 441- 474: ttmdi ThDgfg--F--MLaFgDLVwVPFvYSlqAfYLvghPiA iswpv STS1_SCHPO : 266- 303: qlivp TwDmayekFgfMLiFwNMAgVPFtYShcTlYLfshDpS vynws P 16: 65.2470 6( 5) L-x(1,2)-R-x(2)-R-D-x(2)-[HK]-C-x(2)-K-Y-G-x-[ADN]-[FW]-[DE]-[EKR]-Y-x(3)-[CV]-x-[WY]-x(2)-[IV]-[PS] Occurences: 6(5) ER24_YEAST : 403- 435: yfatl LlhRqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ER24_YEAST : 404- 435: fatll Lh-RqqRDehKCrlKYGeNWEEYerkVpYkiIP yvy ERG3_NEUCR : 455- 487: yfail LihRdlRDdeKCskKYGdDWEKYkklVkWriVP giy ERG4_YEAST : 438- 470: fflvv LihRafRDqaKCkrKYGkDWDEYckhCpYvfIP yvf LBR_CHICK : 573- 605: yficl LvhReaRDehHCkkKYGlAWERYcqrVpYthIS lhlle STS1_SCHPO : 418- 450: fffvv LvhRvsRDikKCkaKYGaDFDEYcriCpYlfIP yif Q 17: 63.1794 5( 5) G-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 5(5) ER24_YEAST : 280- 306: ttdgf GFMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 296- 322: ttdgf GFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 295- 322: ayekf GFMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 446- 472: thdgf GFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 275- 302: ayekf GFMLiFwNMAgVPFtYShcTlYLfshdP svynw R 18: 62.9187 8( 5) D-x(3,5)-F-x(0,2)-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3)-[DP]-x-[AEQS] Occurences: 8(5) ER24_YEAST : 273- 308: vltmm DittdgFgfMLaFgDLSlVPFtYSlqArYLsvsPvE lgwvk ER24_YEAST : 277- 308: mditt Dgfg--F--MLaFgDLSlVPFtYSlqArYLsvsPvE lgwvk ERG3_NEUCR : 289- 324: vlttm DittdgFgfMLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG3_NEUCR : 293- 324: mditt Dgfg--F--MLsFgDVVwVPFmYStqTrYLsvhPqQ lgafg ERG4_YEAST : 288- 323: ivptw DmayekFgfMLiFwNIAgVPYtYChcTlYLyyhDpS eyhws LBR_CHICK : 439- 474: vlttm DithdgFgfMLaFgDLVwVPFvYSlqAfYLvghPiA iswpv LBR_CHICK : 443- 474: mdith Dgfg--F--MLaFgDLVwVPFvYSlqAfYLvghPiA iswpv STS1_SCHPO : 268- 303: ivptw DmayekFgfMLiFwNMAgVPFtYShcTlYLfshDpS vynws S 19: 62.1794 8( 5) G-x(0,2)-F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 8(5) ER24_YEAST : 278- 306: dittd GfgFMLaFgDLSlVPFtYSlqArYLsvs-P velgw ER24_YEAST : 280- 306: ttdgf G--FMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 294- 322: dittd GfgFMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG3_NEUCR : 296- 322: ttdgf G--FMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 295- 322: ayekf G--FMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 444- 472: dithd GfgFMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw LBR_CHICK : 446- 472: thdgf G--FMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 275- 302: ayekf G--FMLiFwNMAgVPFtYShcTlYLfshdP svynw T 20: 59.0093 5( 5) F-M-L-x-F-x-[DN]-[ILMV]-[ASV]-x-V-P-[FY]-x-Y-[CS]-x(2)-[AT]-x-Y-L-x(3,4)-P Occurences: 5(5) ER24_YEAST : 281- 306: tdgfg FMLaFgDLSlVPFtYSlqArYLsvs-P velgw ERG3_NEUCR : 297- 322: tdgfg FMLsFgDVVwVPFmYStqTrYLsvh-P qqlga ERG4_YEAST : 296- 322: yekfg FMLiFwNIAgVPYtYChcTlYLyyhdP seyhw LBR_CHICK : 447- 472: hdgfg FMLaFgDLVwVPFvYSlqAfYLvgh-P iaisw STS1_SCHPO : 276- 302: yekfg FMLiFwNMAgVPFtYShcTlYLfshdP svynw Number of patterns evaluated by Pratt:18346 Total running time: 9 seconds