------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file EPO_TPO PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename EPO_TPO.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: EPO_CANFA 175 EPO_FELCA 188 EPO_HUMAN 193 EPO_MACFA 192 EPO_MOUSE 192 EPO_RAT 192 EPO_SHEEP 194 TPO_CANFA 352 TPO_HUMAN 353 TPO_MOUSE 356 Pratt run started at Thu Feb 6 19:26:20 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 27.6904 10( 10) D-x(5)-L-x(0,1)-S-x(3)-L-L-R-x(0,2)-G 2: 27.1904 10( 10) P-x(2)-L-x(0,2)-L-L-x(0,2)-L-S-x(5)-L 3: 24.5203 10( 10) P-x(4)-C-D-x-R-x-L-x(3,4)-L 4: 24.0203 17( 10) P-x(3,4)-C-D-x-R-x-L-x(3,4)-L 5: 24.0203 10( 10) V-x(2)-A-x(3)-L-x(1,3)-C-x-S-x(2)-L 6: 24.0203 10( 10) P-L-x(2)-P-V-x(2,3)-A-x(3,4)-L 7: 20.3503 10( 10) L-x(5)-L-L-x(2,3)-L-x(2)-Q 8: 20.3503 10( 10) C-D-x-R-x-L-x(3,4)-L 9: 19.8503 10( 10) R-x-L-x(0,1)-G-A-x(0,1)-Q 10: 19.8503 10( 10) L-L-x(2)-L-x(0,1)-G-x(0,1)-Q 11: 19.8503 15( 10) L-x-S-L-x(0,1)-L-x(1,2)-L 12: 19.8503 10( 10) S-x(3)-L-L-R-x(0,2)-G 13: 19.8503 10( 10) L-R-x(0,1)-S-x(2,3)-L-x(3)-L 14: 19.8503 10( 10) L-x(3,4)-A-x(3)-L-x(2,3)-T-x-L 15: 19.8503 14( 10) L-x(1,2)-L-L-x(4)-L-x(3,4)-A 16: 19.8503 10( 10) V-x(4)-V-x-F-x(2,4)-W-K 17: 19.8503 12( 10) L-x(1,2)-D-S-x(2)-L-x(1,2)-R 18: 19.8503 11( 10) L-x(3)-S-x(1,2)-V-x(0,1)-L-x(4)-L 19: 19.8503 10( 10) R-L-x(1,2)-C-x(4,5)-L-x(4)-L 20: 19.8503 10( 10) A-x(3)-L-x(1,3)-C-x-S-x(2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 99.6336 10( 10) V-[LP]-x-[PT]-x-V-[DN]-F-x(2,4)-W-K-x(4)-[EGQ]-[EQST]-x-A-x-[DE]-[IV]-x-[GQ]-[AG]-[LV]-[AST]-L-L-x-[DE]-[AG]-[IV]-[FLM]-x-[AG]-[QR]-[AG]-x(3)-[NP]-[AST]-[CS]-x-[PS] B 2: 86.7530 10( 10) L-[GI]-x(2)-S-x(1,2)-V-x(0,1)-L-x(3)-[AIL]-L-[EQ]-[AGS]-x(2)-[AG]-[ET]-[NQ]-[AILV]-[PT]-x-[GQ]-[CG]-x-[EQT]-x-[ACPT]-x(2)-[DNS]-[EP]-N-[AI]-x-[FV]-[LP]-[DS]-x(4)-[FL]-x-[AGT] C 3: 84.3790 10( 10) P-x(2)-L-x(0,2)-L-L-x(0,2)-L-S-x(4)-[LP]-L-[GL]-[GL]-[AP]-[LV]-x-[CGS]-[AL]-[LP]-[GP]-x(2)-[IL]-[CP]-x-[QS]-x(3)-[ET]-x-[HY]-x(2)-[EP]-[AN]-x(4)-[NS]-x-[QT] D 4: 73.3212 10( 10) R-L-x(1,2)-C-x(4,5)-L-[EPS]-x(2)-[ILV]-L-x-[AP]-x(2)-[AD]-x-[NS]-[AILV]-[GT]-x(3)-[AST]-[EQ]-x(2)-[EQRS]-x(2)-[AE]-[NQ]-x(3)-[GP]-[AD]-[TV]-x-[LV]-x-[FL]-x-[AGT] E 5: 70.9715 10( 10) V-x(2)-A-x-[GP]-[QR]-L-x(1,3)-C-x-S-[RS]-[LV]-L-[EG]-[QR]-x(2)-[GL]-[EQ]-[AV]-[KR]-x-[AL]-x-[GN]-[AIV]-x(2)-[GS]-x(2)-[EGQ] F 6: 70.4740 12( 10) L-x(1,2)-D-S-[HR]-[LV]-L-x(1,2)-R-x(4)-[AP]-[DEKR]-x(2)-[EP]-x(4)-[GV]-x(2)-[EPQ]-x-[CPV]-[DRS]-[FL]-[NS]-x-[GN]-x(3)-[PT]-[DQ]-x-[EK]-x-[NST]-x(2)-[AQT] G 7: 66.8015 10( 10) A-x-[GP]-[QR]-L-x(1,3)-C-x-S-[RS]-[LV]-L-[EG]-[QR]-x(2)-[GL]-[EQ]-[AV]-[KR]-x-[AL]-x-[GN]-[AIV]-x(2)-[GS]-x(2)-[EGQ] H 8: 54.9226 10( 10) D-x-[AN]-[AIV]-x(2)-L-x(0,1)-S-[FIL]-[QT]-x-L-L-R-x(0,2)-G-x(2)-[EKR]-x-[AIL]-x(2)-[LPV]-x-[ADEG]-x-[AST]-x(2)-[APV] I 9: 49.0407 10( 10) P-[APV]-x-[LP]-[AI]-C-D-x-R-[LV]-L-x(3,4)-L-[ER]-[AD]-x-[EH]-[ALV] J 10: 48.2751 10( 10) L-R-x(0,1)-S-x(2,3)-L-x-[RS]-x-L-[GS]-[AQ]-x(2)-[ADE]-[AILV]-x(2)-[LP]-[DPS]-x(2)-[ASTV]-x(2)-[AP]-[ALP] K 11: 44.3383 10( 10) L-x(3,4)-A-[ILV]-[QS]-[GS]-L-x(2,3)-T-[QST]-L-[LP]-x(2)-[GL]-x-[AT]-[QT] L 12: 41.1481 10( 10) S-[FIL]-[QT]-x-L-L-R-x(0,2)-G-x(2)-[EKR]-x-[AIL]-x(2)-[LPV]-x-[ADEG]-x-[AST]-x(2)-[APV] M 13: 39.4109 17( 10) P-x(3,4)-C-D-x-R-[LV]-L-x(3,4)-L-[ER]-[AD]-x-[EH]-[ALV] N 14: 38.4726 10( 10) L-x-[AS]-[IL]-[QT]-[GST]-L-L-x(2,3)-L-[GP]-[ALP]-Q O 15: 38.0955 10( 10) L-x-S-L-x(0,1)-L-x(1,2)-L-[GPS]-[AGLV]-x(3)-[AGLPV]-x(2)-[AGLP]-[AIP]-x-[ADEQT]-[AGST]-x(2)-[AGL] P 16: 36.3118 10( 10) L-x(1,2)-L-L-x(2)-[ALV]-x-L-x(3,4)-A-x-[LP]-x(4)-[DPQ]-x(3)-[ALP]-x-[DQR]-x(2)-[LMV] Q 17: 35.7409 10( 10) C-D-x-R-[LV]-L-x(3,4)-L-[ER]-[AD]-x-[EH]-[ALV] R 18: 34.8489 10( 10) L-L-x(2)-L-x(0,1)-G-x(0,1)-Q-x(2)-[AIL]-x(2)-[GLP]-[ADP]-x-[AEQT]-[AGST]-x(2)-[AGP] S 19: 29.9378 10( 10) P-L-[GPS]-x-P-V-x(2,3)-A-x(3,4)-L-[GI] T 20: 25.2454 10( 10) V-[LP]-x-[PT]-x-V-[DN]-F-x(2,4)-W Best patterns with alignements: fitness hits(seqs) Pattern A 1: 99.6336 10( 10) V-[LP]-x-[PT]-x-V-[DN]-F-x(2,4)-W-K-x(4)-[EGQ]-[EQST]-x-A-x-[DE]-[IV]-x-[GQ]-[AG]-[LV]-[AST]-L-L-x-[DE]-[AG]-[IV]-[FLM]-x-[AG]-[QR]-[AG]-x(3)-[NP]-[AST]-[CS]-x-[PS] Occurences: 10(10) EPO_CANFA : 63- 109: senit VPdTkVNFyt--WKrmdvGQqAlEVwQGLALLsEAILrGQAllaNASqP setpq EPO_FELCA : 63- 109: senit VPdTkVNFyt--WKrmdvGQqAvEVwQGLALLsEAILrGQAllaNSSqP setlq EPO_HUMAN : 68- 114: nenit VPdTkVNFya--WKrmevGQqAvEVwQGLALLsEAVLrGQAllvNSSqP weplq EPO_MACFA : 68- 114: nenit VPdTkVNFya--WKrmevGQqAvEVwQGLALLsEAVLrGQAvlaNSSqP feplq EPO_MOUSE : 67- 113: senit VPdTkVNFya--WKrmevEEqAiEVwQGLSLLsEAILqAQAllaNSSqP petlq EPO_RAT : 67- 113: senit VPdTkVNFya--WKrmkvEEqAvEVwQGLSLLsEAILqAQAlqaNSSqP peslq EPO_SHEEP : 68- 114: senit VPdTkVNFya--WKrmevQQqAlEVwQGLALLsEAIFrGQAllaNASqP cealr TPO_CANFA : 60- 108: plstp VLlPaVDFslgeWKtqkeQTkAqDVwGAVALLlDGVLaARGqlgPSClS sllgq TPO_HUMAN : 60- 108: plptp VLlPaVDFslgeWKtqmeETkAqDIlGAVTLLlEGVMaARGqlgPTClS sllgq TPO_MOUSE : 60- 108: plsip VLlPaVDFslgeWKtqteQSkAqDIlGAVSLLlEGVMaARGqlePSClS sllgq B 2: 86.7530 10( 10) L-[GI]-x(2)-S-x(1,2)-V-x(0,1)-L-x(3)-[AIL]-L-[EQ]-[AGS]-x(2)-[AG]-[ET]-[NQ]-[AILV]-[PT]-x-[GQ]-[CG]-x-[EQT]-x-[ACPT]-x(2)-[DNS]-[EP]-N-[AI]-x-[FV]-[LP]-[DS]-x(4)-[FL]-x-[AGT] Occurences: 10(10) EPO_CANFA : 27- 72: gappr LIcdSr-V-LeryILEAreAENVTmGCaQgCsfSENItVPDtkvnFyT wkrmd EPO_FELCA : 27- 72: gappr LIcdSr-V-LeryILEAreAENVTmGCaEgCsfSENItVPDtkvnFyT wkrmd EPO_HUMAN : 32- 77: gappr LIcdSr-V-LeryLLEAkeAENITtGCaEhCslNENItVPDtkvnFyA wkrme EPO_MACFA : 32- 77: gappr LIcdSr-V-LeryLLEAkeAENVTmGCsEsCslNENItVPDtkvnFyA wkrme EPO_MOUSE : 31- 76: cappr LIcdSr-V-LeryILEAkeAENVTmGCaEgPrlSENItVPDtkvnFyA wkrme EPO_RAT : 31- 76: cappr LIcdSr-V-LeryILEAkeAENVTmGCaEgPrlSENItVPDtkvnFyA wkrmk EPO_SHEEP : 32- 77: gappr LIcdSr-V-LeryILEAreAENATmGCaEgCsfSENItVPDtkvnFyA wkrme TPO_CANFA : 111- 158: clssl LGqlSgqVrLllgALQGllGTQLPpQGrTtThkDPNAiFLSfqqlLrG kvrfl TPO_HUMAN : 111- 158: clssl LGqlSgqVrLllgALQSllGTQLPpQGrTtAhkDPNAiFLSfqhlLrG kvrfl TPO_MOUSE : 111- 158: clssl LGqlSgqVrLllgALQGllGTQLPlQGrTtAhkDPNAlFLSlqqlLrG kvrfl C 3: 84.3790 10( 10) P-x(2)-L-x(0,2)-L-L-x(0,2)-L-S-x(4)-[LP]-L-[GL]-[GL]-[AP]-[LV]-x-[CGS]-[AL]-[LP]-[GP]-x(2)-[IL]-[CP]-x-[QS]-x(3)-[ET]-x-[HY]-x(2)-[EP]-[AN]-x(4)-[NS]-x-[QT] Occurences: 10(10) EPO_CANFA : 3- 48: ec PalL--LL--LSllllPLGLPVlGAPPrlICdSrvlErYilEAreaeNvT mgcaq EPO_FELCA : 3- 48: ec PalL--LL--LSllllPLGLPVlGAPPrlICdSrvlErYilEAreaeNvT mgcae EPO_HUMAN : 7- 53: gvhec PawLw-LL--LSllslPLGLPVlGAPPrlICdSrvlErYllEAkeaeNiT tgcae EPO_MACFA : 7- 53: gvhec PawLw-LL--LSlvslPLGLPVpGAPPrlICdSrvlErYllEAkeaeNvT mgcse EPO_MOUSE : 7- 52: gvper PtlL--LL--LSllliPLGLPVlCAPPrlICdSrvlErYilEAkeaeNvT mgcae EPO_RAT : 7- 52: gvper PtlL--LL--LSllliPLGLPVlCAPPrlICdSrvlErYilEAkeaeNvT mgcae EPO_SHEEP : 8- 53: ardct PllL--LL--LSfllfPLGLPVlGAPPrlICdSrvlErYilEAreaeNaT mgcae TPO_CANFA : 104- 153: rgqlg PscLssLLgqLSgqvrLLLGALqGLLGtqLPpQgrtTtHkdPNaiflSfQ qllrg TPO_HUMAN : 104- 153: rgqlg PtcLssLLgqLSgqvrLLLGALqSLLGtqLPpQgrtTaHkdPNaiflSfQ hllrg TPO_MOUSE : 104- 153: rgqle PscLssLLgqLSgqvrLLLGALqGLLGtqLPlQgrtTaHkdPNalflSlQ qllrg D 4: 73.3212 10( 10) R-L-x(1,2)-C-x(4,5)-L-[EPS]-x(2)-[ILV]-L-x-[AP]-x(2)-[AD]-x-[NS]-[AILV]-[GT]-x(3)-[AST]-[EQ]-x(2)-[EQRS]-x(2)-[AE]-[NQ]-x(3)-[GP]-[AD]-[TV]-x-[LV]-x-[FL]-x-[AGT] Occurences: 10(10) EPO_CANFA : 26- 72: lgapp RLi-Cdsrv-LEryILeAreAeNVTmgcAQgcSfsENitvPDTkVnFyT wkrmd EPO_FELCA : 26- 72: lgapp RLi-Cdsrv-LEryILeAreAeNVTmgcAEgcSfsENitvPDTkVnFyT wkrmd EPO_HUMAN : 31- 77: lgapp RLi-Cdsrv-LEryLLeAkeAeNITtgcAEhcSlnENitvPDTkVnFyA wkrme EPO_MACFA : 31- 77: pgapp RLi-Cdsrv-LEryLLeAkeAeNVTmgcSEscSlnENitvPDTkVnFyA wkrme EPO_MOUSE : 30- 76: lcapp RLi-Cdsrv-LEryILeAkeAeNVTmgcAEgpRlsENitvPDTkVnFyA wkrme EPO_RAT : 30- 76: lcapp RLi-Cdsrv-LEryILeAkeAeNVTmgcAEgpRlsENitvPDTkVnFyA wkrmk EPO_SHEEP : 31- 77: lgapp RLi-Cdsrv-LEryILeAreAeNATmgcAEgcSfsENitvPDTkVnFyA wkrme TPO_CANFA : 46- 94: hvlhs RLsqCpdiypLStpVLlPavDfSLGewkTQkeQtkAQdvwGAVaLlLdG vlaar TPO_HUMAN : 46- 94: hvlhs RLsqCpevhpLPtpVLlPavDfSLGewkTQmeEtkAQdilGAVtLlLeG vmaar TPO_MOUSE : 46- 94: hllhs RLsqCpdvdpLSipVLlPavDfSLGewkTQteQskAQdilGAVsLlLeG vmaar E 5: 70.9715 10( 10) V-x(2)-A-x-[GP]-[QR]-L-x(1,3)-C-x-S-[RS]-[LV]-L-[EG]-[QR]-x(2)-[GL]-[EQ]-[AV]-[KR]-x-[AL]-x-[GN]-[AIV]-x(2)-[GS]-x(2)-[EGQ] Occurences: 10(10) EPO_CANFA : 20- 53: plglp VlgApPRLi--CdSRVLERyiLEAReAeNVtmGcaQ gcsfs EPO_FELCA : 20- 53: plglp VlgApPRLi--CdSRVLERyiLEAReAeNVtmGcaE gcsfs EPO_HUMAN : 25- 58: plglp VlgApPRLi--CdSRVLERylLEAKeAeNIttGcaE hcsln EPO_MACFA : 25- 58: plglp VpgApPRLi--CdSRVLERylLEAKeAeNVtmGcsE scsln EPO_MOUSE : 24- 57: plglp VlcApPRLi--CdSRVLERyiLEAKeAeNVtmGcaE gprls EPO_RAT : 24- 57: plglp VlcApPRLi--CdSRVLERyiLEAKeAeNVtmGcaE gprls EPO_SHEEP : 25- 58: plglp VlgApPRLi--CdSRVLERyiLEAReAeNAtmGcaE gcsfs TPO_CANFA : 95- 130: llldg VlaArGQLgpsClSSLLGQlsGQVRlLlGAlqGllG tqlpp TPO_HUMAN : 95- 130: llleg VmaArGQLgptClSSLLGQlsGQVRlLlGAlqSllG tqlpp TPO_MOUSE : 95- 130: llleg VmaArGQLepsClSSLLGQlsGQVRlLlGAlqGllG tqlpl F 6: 70.4740 12( 10) L-x(1,2)-D-S-[HR]-[LV]-L-x(1,2)-R-x(4)-[AP]-[DEKR]-x(2)-[EP]-x(4)-[GV]-x(2)-[EPQ]-x-[CPV]-[DRS]-[FL]-[NS]-x-[GN]-x(3)-[PT]-[DQ]-x-[EK]-x-[NST]-x(2)-[AQT] Occurences: 12(10) EPO_CANFA : 27- 72: gappr LicDSRVLe-RyileAReaEnvtmGcaQgCSFSeNitvPDtKvNfyT wkrmd EPO_FELCA : 27- 72: gappr LicDSRVLe-RyileAReaEnvtmGcaEgCSFSeNitvPDtKvNfyT wkrmd EPO_HUMAN : 32- 77: gappr LicDSRVLe-RylleAKeaEnittGcaEhCSLNeNitvPDtKvNfyA wkrme EPO_MACFA : 32- 77: gappr LicDSRVLe-RylleAKeaEnvtmGcsEsCSLNeNitvPDtKvNfyA wkrme EPO_MOUSE : 31- 76: cappr LicDSRVLe-RyileAKeaEnvtmGcaEgPRLSeNitvPDtKvNfyA wkrme EPO_RAT : 31- 76: cappr LicDSRVLe-RyileAKeaEnvtmGcaEgPRLSeNitvPDtKvNfyA wkrmk EPO_SHEEP : 32- 77: gappr LicDSRVLe-RyileAReaEnatmGcaEgCSFSeNitvPDtKvNfyA wkrme TPO_CANFA : 37- 82: llnkm Lr-DSHVLhsRlsqcPDiyPlstpVllPaVDFSlGewkTQkEqTkaQ dvwga TPO_HUMAN : 36- 82: rvlsk LlrDSHVLhsRlsqcPEvhPlptpVllPaVDFSlGewkTQmEeTkaQ dilga TPO_HUMAN : 37- 82: vlskl Lr-DSHVLhsRlsqcPEvhPlptpVllPaVDFSlGewkTQmEeTkaQ dilga TPO_MOUSE : 36- 82: rllnk LlrDSHLLhsRlsqcPDvdPlsipVllPaVDFSlGewkTQtEqSkaQ dilga TPO_MOUSE : 37- 82: llnkl Lr-DSHLLhsRlsqcPDvdPlsipVllPaVDFSlGewkTQtEqSkaQ dilga G 7: 66.8015 10( 10) A-x-[GP]-[QR]-L-x(1,3)-C-x-S-[RS]-[LV]-L-[EG]-[QR]-x(2)-[GL]-[EQ]-[AV]-[KR]-x-[AL]-x-[GN]-[AIV]-x(2)-[GS]-x(2)-[EGQ] Occurences: 10(10) EPO_CANFA : 23- 53: lpvlg ApPRLi--CdSRVLERyiLEAReAeNVtmGcaQ gcsfs EPO_FELCA : 23- 53: lpvlg ApPRLi--CdSRVLERyiLEAReAeNVtmGcaE gcsfs EPO_HUMAN : 28- 58: lpvlg ApPRLi--CdSRVLERylLEAKeAeNIttGcaE hcsln EPO_MACFA : 28- 58: lpvpg ApPRLi--CdSRVLERylLEAKeAeNVtmGcsE scsln EPO_MOUSE : 27- 57: lpvlc ApPRLi--CdSRVLERyiLEAKeAeNVtmGcaE gprls EPO_RAT : 27- 57: lpvlc ApPRLi--CdSRVLERyiLEAKeAeNVtmGcaE gprls EPO_SHEEP : 28- 58: lpvlg ApPRLi--CdSRVLERyiLEAReAeNAtmGcaE gcsfs TPO_CANFA : 98- 130: dgvla ArGQLgpsClSSLLGQlsGQVRlLlGAlqGllG tqlpp TPO_HUMAN : 98- 130: egvma ArGQLgptClSSLLGQlsGQVRlLlGAlqSllG tqlpp TPO_MOUSE : 98- 130: egvma ArGQLepsClSSLLGQlsGQVRlLlGAlqGllG tqlpl H 8: 54.9226 10( 10) D-x-[AN]-[AIV]-x(2)-L-x(0,1)-S-[FIL]-[QT]-x-L-L-R-x(0,2)-G-x(2)-[EKR]-x-[AIL]-x(2)-[LPV]-x-[ADEG]-x-[AST]-x(2)-[APV] Occurences: 10(10) EPO_CANFA : 118- 150: pqlhv DkAVssLrSLTsLLRalGaqKeAmsLpEeAspA plrtf EPO_FELCA : 118- 150: lqlhv DkAVssLrSLTsLLRalGaqKeAtsLpEaTsaA plrtf EPO_HUMAN : 123- 155: lqlhv DkAVsgLrSLTtLLRalGaqKeAisPpDaAsaA plrti EPO_MACFA : 123- 155: lqlhm DkAIsgLrSITtLLRalGaqEaIslPdAaSaaP lrtit EPO_MOUSE : 122- 154: lqlhi DkAIsgLrSLTsLLRvlGaqKeLmsPpDtTppA plrtl EPO_RAT : 122- 154: lqlhi DkAIsgLrSLTsLLRvlGaqKeLmsPpDaTqaA plrtl EPO_SHEEP : 123- 155: lrlhv DkAVsgLrSLTsLLRalGaqKeAipLpDaTpsA aplri TPO_CANFA : 144- 173: ttthk DpNAifL-SFQqLLR--GkvRfLllVaGpTlcA kqsqp TPO_HUMAN : 144- 173: ttahk DpNAifL-SFQhLLR--GkvRfLmlVgGsTlcV rrapp TPO_MOUSE : 144- 173: ttahk DpNAlfL-SLQqLLR--GkvRfLllVeGpTlcV rrtlp I 9: 49.0407 10( 10) P-[APV]-x-[LP]-[AI]-C-D-x-R-[LV]-L-x(3,4)-L-[ER]-[AD]-x-[EH]-[ALV] Occurences: 10(10) EPO_CANFA : 24- 44: pvlga PPrLICDsRVLeryiLEArEA envtm EPO_FELCA : 24- 44: pvlga PPrLICDsRVLeryiLEArEA envtm EPO_HUMAN : 29- 49: pvlga PPrLICDsRVLerylLEAkEA enitt EPO_MACFA : 29- 49: pvpga PPrLICDsRVLerylLEAkEA envtm EPO_MOUSE : 28- 48: pvlca PPrLICDsRVLeryiLEAkEA envtm EPO_RAT : 28- 48: pvlca PPrLICDsRVLeryiLEAkEA envtm EPO_SHEEP : 29- 49: pvlga PPrLICDsRVLeryiLEArEA enatm TPO_CANFA : 23- 42: ldpcl PApPACDpRLLnkm-LRDsHV lhsrl TPO_HUMAN : 23- 42: ltlss PApPACDlRVLskl-LRDsHV lhsrl TPO_MOUSE : 23- 42: ltlss PVaPACDpRLLnkl-LRDsHL lhsrl J 10: 48.2751 10( 10) L-R-x(0,1)-S-x(2,3)-L-x-[RS]-x-L-[GS]-[AQ]-x(2)-[ADE]-[AILV]-x(2)-[LP]-[DPS]-x(2)-[ASTV]-x(2)-[AP]-[ALP] Occurences: 10(10) EPO_CANFA : 124- 151: kavss LR-SltsLlRaLGAqkEAmsLPeeAspAP lrtft EPO_FELCA : 124- 151: kavss LR-SltsLlRaLGAqkEAtsLPeaTsaAP lrtft EPO_HUMAN : 129- 156: kavsg LR-SlttLlRaLGAqkEAisPPdaAsaAP lrtit EPO_MACFA : 129- 156: kaisg LR-SittLlRaLGAqeAIslPDaaSaaPL rtita EPO_MOUSE : 128- 155: kaisg LR-SltsLlRvLGAqkELmsPPdtTppAP lrtlt EPO_RAT : 128- 155: kaisg LR-SltsLlRvLGAqkELmsPPdaTqaAP lrtlt EPO_SHEEP : 129- 156: kavsg LR-SltsLlRaLGAqkEAipLPdaTpsAA plrif TPO_CANFA : 37- 64: llnkm LRdShv-LhSrLSQcpDIypLStpVllPA vdfsl TPO_HUMAN : 37- 64: vlskl LRdShv-LhSrLSQcpEVhpLPtpVllPA vdfsl TPO_MOUSE : 37- 64: llnkl LRdShl-LhSrLSQcpDVdpLSipVllPA vdfsl K 11: 44.3383 10( 10) L-x(3,4)-A-[ILV]-[QS]-[GS]-L-x(2,3)-T-[QST]-L-[LP]-x(2)-[GL]-x-[AT]-[QT] Occurences: 10(10) EPO_CANFA : 115- 137: setpq LhvdkAVSSLrslTSLLraLgAQ keams EPO_FELCA : 115- 137: setlq LhvdkAVSSLrslTSLLraLgAQ keats EPO_HUMAN : 120- 142: weplq LhvdkAVSGLrslTTLLraLgAQ keais EPO_MACFA : 120- 142: feplq LhmdkAISGLrsiTTLLraLgAQ eaisl EPO_MOUSE : 119- 141: petlq LhidkAISGLrslTSLLrvLgAQ kelms EPO_RAT : 119- 141: peslq LhidkAISGLrslTSLLrvLgAQ kelms EPO_SHEEP : 120- 142: cealr LhvdkAVSGLrslTSLLraLgAQ keaip TPO_CANFA : 120- 140: sgqvr Lllg-ALQGLlg-TQLPpqGrTT thkdp TPO_HUMAN : 120- 140: sgqvr Lllg-ALQSLlg-TQLPpqGrTT ahkdp TPO_MOUSE : 120- 140: sgqvr Lllg-ALQGLlg-TQLPlqGrTT ahkdp L 12: 41.1481 10( 10) S-[FIL]-[QT]-x-L-L-R-x(0,2)-G-x(2)-[EKR]-x-[AIL]-x(2)-[LPV]-x-[ADEG]-x-[AST]-x(2)-[APV] Occurences: 10(10) EPO_CANFA : 126- 150: vsslr SLTsLLRalGaqKeAmsLpEeAspA plrtf EPO_FELCA : 126- 150: vsslr SLTsLLRalGaqKeAtsLpEaTsaA plrtf EPO_HUMAN : 131- 155: vsglr SLTtLLRalGaqKeAisPpDaAsaA plrti EPO_MACFA : 131- 155: isglr SITtLLRalGaqEaIslPdAaSaaP lrtit EPO_MOUSE : 130- 154: isglr SLTsLLRvlGaqKeLmsPpDtTppA plrtl EPO_RAT : 130- 154: isglr SLTsLLRvlGaqKeLmsPpDaTqaA plrtl EPO_SHEEP : 131- 155: vsglr SLTsLLRalGaqKeAipLpDaTpsA aplri TPO_CANFA : 151- 173: naifl SFQqLLR--GkvRfLllVaGpTlcA kqsqp TPO_HUMAN : 151- 173: naifl SFQhLLR--GkvRfLmlVgGsTlcV rrapp TPO_MOUSE : 151- 173: nalfl SLQqLLR--GkvRfLllVeGpTlcV rrtlp M 13: 39.4109 17( 10) P-x(3,4)-C-D-x-R-[LV]-L-x(3,4)-L-[ER]-[AD]-x-[EH]-[ALV] Occurences: 17(10) EPO_CANFA : 24- 44: pvlga PprliCDsRVLeryiLEArEA envtm EPO_CANFA : 25- 44: vlgap Prli-CDsRVLeryiLEArEA envtm EPO_FELCA : 24- 44: pvlga PprliCDsRVLeryiLEArEA envtm EPO_FELCA : 25- 44: vlgap Prli-CDsRVLeryiLEArEA envtm EPO_HUMAN : 29- 49: pvlga PprliCDsRVLerylLEAkEA enitt EPO_HUMAN : 30- 49: vlgap Prli-CDsRVLerylLEAkEA enitt EPO_MACFA : 29- 49: pvpga PprliCDsRVLerylLEAkEA envtm EPO_MACFA : 30- 49: vpgap Prli-CDsRVLerylLEAkEA envtm EPO_MOUSE : 28- 48: pvlca PprliCDsRVLeryiLEAkEA envtm EPO_MOUSE : 29- 48: vlcap Prli-CDsRVLeryiLEAkEA envtm EPO_RAT : 28- 48: pvlca PprliCDsRVLeryiLEAkEA envtm EPO_RAT : 29- 48: vlcap Prli-CDsRVLeryiLEAkEA envtm EPO_SHEEP : 29- 49: pvlga PprliCDsRVLeryiLEArEA enatm EPO_SHEEP : 30- 49: vlgap Prli-CDsRVLeryiLEArEA enatm TPO_CANFA : 23- 42: ldpcl PappaCDpRLLnkm-LRDsHV lhsrl TPO_HUMAN : 23- 42: ltlss PappaCDlRVLskl-LRDsHV lhsrl TPO_MOUSE : 23- 42: ltlss PvapaCDpRLLnkl-LRDsHL lhsrl N 14: 38.4726 10( 10) L-x-[AS]-[IL]-[QT]-[GST]-L-L-x(2,3)-L-[GP]-[ALP]-Q Occurences: 10(10) EPO_CANFA : 124- 137: kavss LrSLTSLLra-LGAQ keams EPO_FELCA : 124- 137: kavss LrSLTSLLra-LGAQ keats EPO_HUMAN : 129- 142: kavsg LrSLTTLLra-LGAQ keais EPO_MACFA : 129- 142: kaisg LrSITTLLra-LGAQ eaisl EPO_MOUSE : 128- 141: kaisg LrSLTSLLrv-LGAQ kelms EPO_RAT : 128- 141: kaisg LrSLTSLLrv-LGAQ kelms EPO_SHEEP : 129- 142: kavsg LrSLTSLLra-LGAQ keaip TPO_CANFA : 122- 136: qvrll LgALQGLLgtqLPPQ grttt TPO_HUMAN : 122- 136: qvrll LgALQSLLgtqLPPQ grtta TPO_MOUSE : 122- 136: qvrll LgALQGLLgtqLPLQ grtta O 15: 38.0955 10( 10) L-x-S-L-x(0,1)-L-x(1,2)-L-[GPS]-[AGLV]-x(3)-[AGLPV]-x(2)-[AGLP]-[AIP]-x-[ADEQT]-[AGST]-x(2)-[AGL] Occurences: 10(10) EPO_CANFA : 127- 150: sslrs LtSL-LraLGAqkeAmsLPeEAspA plrtf EPO_FELCA : 127- 150: sslrs LtSL-LraLGAqkeAtsLPeATsaA plrtf EPO_HUMAN : 16- 39: wllls LlSLpLg-LPVlgaPprLIcDSrvL eryll EPO_MACFA : 16- 39: wllls LvSLpLg-LPVpgaPprLIcDSrvL eryll EPO_MOUSE : 131- 154: sglrs LtSL-LrvLGAqkeLmsPPdTTppA plrtl EPO_RAT : 131- 154: sglrs LtSL-LrvLGAqkeLmsPPdATqaA plrtl EPO_SHEEP : 132- 155: sglrs LtSL-LraLGAqkeAipLPdATpsA aplri TPO_CANFA : 107- 130: lgpsc LsSL-LgqLSGqvrLllGAlQGllG tqlpp TPO_HUMAN : 107- 130: lgptc LsSL-LgqLSGqvrLllGAlQSllG tqlpp TPO_MOUSE : 107- 130: lepsc LsSL-LgqLSGqvrLllGAlQGllG tqlpl P 16: 36.3118 10( 10) L-x(1,2)-L-L-x(2)-[ALV]-x-L-x(3,4)-A-x-[LP]-x(4)-[DPQ]-x(3)-[ALP]-x-[DQR]-x(2)-[LMV] Occurences: 10(10) EPO_CANFA : 9- 39: allll LslLLlpLgLpvlgApPrlicDsrvLeRyiL earea EPO_FELCA : 9- 39: allll LslLLlpLgLpvlgApPrlicDsrvLeRyiL earea EPO_HUMAN : 94- 122: evwqg La-LLseAvLrgq-AlLvnssQpwePlQlhV dkavs EPO_MACFA : 94- 122: evwqg La-LLseAvLrgq-AvLanssQpfePlQlhM dkais EPO_MOUSE : 13- 43: tllll LslLLipLgLpvlcApPrlicDsrvLeRyiL eakea EPO_RAT : 13- 43: tllll LslLLipLgLpvlcApPrlicDsrvLeRyiL eakea EPO_SHEEP : 14- 44: lllll LsfLLfpLgLpvlgApPrlicDsrvLeRyiL earea TPO_CANFA : 3- 32: me LteLLlvVmLllt-ArLdpclPappAcDprL lnkml TPO_HUMAN : 3- 32: me LteLLlvVmLllt-ArLtlssPappAcDlrV lskll TPO_MOUSE : 3- 32: me LtdLLlaAmLlav-ArLtlssPvapAcDprL lnkll Q 17: 35.7409 10( 10) C-D-x-R-[LV]-L-x(3,4)-L-[ER]-[AD]-x-[EH]-[ALV] Occurences: 10(10) EPO_CANFA : 29- 44: pprli CDsRVLeryiLEArEA envtm EPO_FELCA : 29- 44: pprli CDsRVLeryiLEArEA envtm EPO_HUMAN : 34- 49: pprli CDsRVLerylLEAkEA enitt EPO_MACFA : 34- 49: pprli CDsRVLerylLEAkEA envtm EPO_MOUSE : 33- 48: pprli CDsRVLeryiLEAkEA envtm EPO_RAT : 33- 48: pprli CDsRVLeryiLEAkEA envtm EPO_SHEEP : 34- 49: pprli CDsRVLeryiLEArEA enatm TPO_CANFA : 28- 42: pappa CDpRLLnkm-LRDsHV lhsrl TPO_HUMAN : 28- 42: pappa CDlRVLskl-LRDsHV lhsrl TPO_MOUSE : 28- 42: pvapa CDpRLLnkl-LRDsHL lhsrl R 18: 34.8489 10( 10) L-L-x(2)-L-x(0,1)-G-x(0,1)-Q-x(2)-[AIL]-x(2)-[GLP]-[ADP]-x-[AEQT]-[AGST]-x(2)-[AGP] Occurences: 10(10) EPO_CANFA : 130- 150: rslts LLraL-GaQkeAmsLPeEAspA plrtf EPO_FELCA : 130- 150: rslts LLraL-GaQkeAtsLPeATsaA plrtf EPO_HUMAN : 135- 155: rsltt LLraL-GaQkeAisPPdAAsaA plrti EPO_MACFA : 135- 155: rsitt LLraL-GaQeaIslPDaASaaP lrtit EPO_MOUSE : 134- 154: rslts LLrvL-GaQkeLmsPPdTTppA plrtl EPO_RAT : 134- 154: rslts LLrvL-GaQkeLmsPPdATqaA plrtl EPO_SHEEP : 135- 155: rslts LLraL-GaQkeAipLPdATpsA aplri TPO_CANFA : 110- 130: sclss LLgqLsG-QvrLllGAlQGllG tqlpp TPO_HUMAN : 110- 130: tclss LLgqLsG-QvrLllGAlQSllG tqlpp TPO_MOUSE : 110- 130: sclss LLgqLsG-QvrLllGAlQGllG tqlpl S 19: 29.9378 10( 10) P-L-[GPS]-x-P-V-x(2,3)-A-x(3,4)-L-[GI] Occurences: 10(10) EPO_CANFA : 15- 28: sllll PLGlPVlg-Appr-LI cdsrv EPO_FELCA : 15- 28: sllll PLGlPVlg-Appr-LI cdsrv EPO_HUMAN : 20- 33: sllsl PLGlPVlg-Appr-LI cdsrv EPO_MACFA : 20- 33: slvsl PLGlPVpg-Appr-LI cdsrv EPO_MOUSE : 19- 32: sllli PLGlPVlc-Appr-LI cdsrv EPO_RAT : 19- 32: sllli PLGlPVlc-Appr-LI cdsrv EPO_SHEEP : 20- 33: sfllf PLGlPVlg-Appr-LI cdsrv TPO_CANFA : 55- 70: cpdiy PLStPVllpAvdfsLG ewktq TPO_HUMAN : 55- 70: cpevh PLPtPVllpAvdfsLG ewktq TPO_MOUSE : 55- 70: cpdvd PLSiPVllpAvdfsLG ewktq T 20: 25.2454 10( 10) V-[LP]-x-[PT]-x-V-[DN]-F-x(2,4)-W Occurences: 10(10) EPO_CANFA : 63- 73: senit VPdTkVNFyt--W krmdv EPO_FELCA : 63- 73: senit VPdTkVNFyt--W krmdv EPO_HUMAN : 68- 78: nenit VPdTkVNFya--W krmev EPO_MACFA : 68- 78: nenit VPdTkVNFya--W krmev EPO_MOUSE : 67- 77: senit VPdTkVNFya--W krmev EPO_RAT : 67- 77: senit VPdTkVNFya--W krmkv EPO_SHEEP : 68- 78: senit VPdTkVNFya--W krmev TPO_CANFA : 60- 72: plstp VLlPaVDFslgeW ktqke TPO_HUMAN : 60- 72: plptp VLlPaVDFslgeW ktqme TPO_MOUSE : 60- 72: plsip VLlPaVDFslgeW ktqte Number of patterns evaluated by Pratt:4779 Total running time: 3 seconds