------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file EPIMORPHIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename EPIMORPHIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: EPMO_HUMAN 288 EPMO_MOUSE 289 PE12_YEAST 288 SED5_YEAST 340 SSO1_YEAST 290 SSO2_YEAST 295 SYNA_BOVIN 288 SYNA_RAT 288 SYNB_BOVIN 288 SYNB_RAT 288 Pratt run started at Thu Feb 6 19:26:17 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.3503 10( 10) V-x(4)-E-x(4)-I-x(2,3)-N-x(0,2)-V 2: 16.1802 10( 10) E-L-x(3)-F-x(0,1)-D 3: 15.6802 12( 10) K-x(4)-A-x(0,1)-R-x(0,1)-K 4: 15.1802 10( 10) A-x(5)-K-x(1,3)-R-x(1,2)-K 5: 15.1802 15( 10) E-x(0,2)-E-x(4)-I-x(0,1)-K 6: 15.1802 10( 10) E-x(4)-I-x(2,3)-N-x(0,2)-V 7: 15.1802 11( 10) V-x(0,2)-E-x(2,3)-E-x(4)-I 8: 15.1802 10( 10) E-x-L-x(2,4)-E-x(3,4)-A 9: 14.6802 11( 10) V-x(0,2)-E-x(0,2)-E-x(4)-I 10: 12.5102 10( 10) E-x(4)-E-x(4)-F 11: 12.5102 11( 10) L-x(5)-Q-x(3)-L 12: 12.5102 14( 10) I-E-Q 13: 12.0102 20( 10) I-x(2,3)-I-x(3)-V 14: 12.0102 17( 10) S-x(3,4)-R-K 15: 12.0102 14( 10) K-x(0,1)-Q-x(2)-A 16: 12.0102 13( 10) E-x(4)-I-x(0,1)-K 17: 12.0102 13( 10) V-x(0,1)-E-x-A 18: 12.0102 12( 10) D-x(2,3)-E-x-A 19: 12.0102 10( 10) E-x(0,1)-Q-G 20: 12.0102 24( 10) E-x(2,3)-E-x(4)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 70.1338 10( 10) E-x-[GST]-[IM]-x-E-[LV]-x-[DENQ]-[LMV]-F-x-[DQ]-[LM]-x(2)-[FLMV]-V-x-[EQST]-Q-[GQ]-x(2)-[IV]-[DNQ]-x-I-[DE]-x-N-[IV] B 2: 35.2979 10( 10) E-L-x(3)-F-x(0,1)-D-x(4)-[NV]-x(3)-[AGQ]-x(2)-[IV]-x(2)-I-x(2)-[NV]-[FIV] C 3: 26.9627 10( 10) V-x(3)-[EGQ]-E-x-[GIV]-[DGNQ]-x-I-x(2,3)-N-x(0,2)-V D 4: 23.6663 10( 10) V-x(0,2)-E-x(0,2)-E-x(2)-[DGNQS]-x-I-[ADES]-x(3)-[DEQ]-x(2)-[ADEQ] E 5: 20.1143 10( 10) E-x-[GIV]-[DGNQ]-x-I-x(2,3)-N-x(0,2)-V F 6: 20.0543 10( 10) V-x(0,2)-E-x(2,3)-E-x(2)-[DGNQ]-x-I-[DES] G 7: 18.9628 10( 10) K-x-[AQ]-x(2)-A-x(0,1)-R-x(0,1)-K H 8: 18.3660 15( 10) E-x(0,2)-E-x(4)-I-x(0,1)-K-x(4)-[AV] I 9: 17.8317 10( 10) A-x-[DKR]-x(3)-K-x(1,3)-R-x(1,2)-K J 10: 17.2992 10( 10) L-x(4)-[AGST]-Q-x-[EST]-x-L K 11: 16.4470 10( 10) E-x(0,1)-Q-G-x(3)-[DNQT]-x(2)-[ADEQ] L 12: 15.1960 13( 10) E-x(4)-I-x(0,1)-K-x(4)-[AV] M 13: 15.1802 10( 10) E-x-L-x(2,4)-E-x(3,4)-A N 14: 14.7224 14( 10) I-E-Q-[EQRS] O 15: 14.6186 12( 10) V-x(0,1)-E-x-A-x(2)-[DES] P 16: 14.6186 12( 10) D-x(2,3)-E-x-A-x(2)-[DES] Q 17: 14.1875 10( 10) K-x(0,1)-Q-x(2)-A-x-[ENQR] R 18: 13.6658 23( 10) E-x(2,3)-E-x(2)-[DEGNQS]-x-I S 19: 12.0102 20( 10) I-x(2,3)-I-x(3)-V T 20: 12.0102 17( 10) S-x(3,4)-R-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 70.1338 10( 10) E-x-[GST]-[IM]-x-E-[LV]-x-[DENQ]-[LMV]-F-x-[DQ]-[LM]-x(2)-[FLMV]-V-x-[EQST]-Q-[GQ]-x(2)-[IV]-[DNQ]-x-I-[DE]-x-N-[IV] Occurences: 10(10) EPMO_HUMAN : 205- 236: dimkl EtSIrELhEMFmDMamFVeTQGemINnIErNV mnatd EPMO_MOUSE : 206- 237: dimkl EtSIrELhEMFmDMamFVeTQGemVNnIErNV vnsvd PE12_YEAST : 209- 240: eisni ErGItELnEVFkDLgsVVqQQGvlVDnIEaNI yttsd SED5_YEAST : 263- 294: aveti EsTIqEVgNLFqQLasMVqEQGevIQrIDaNV ddidl SSO1_YEAST : 204- 235: ellkl EkSMaELtQLFnDMeeLViEQQenVDvIDkNV edaql SSO2_YEAST : 208- 239: ellkl EkTMaELtQLFnDMkeLViEQQenVDvIDkNV edaqq SYNA_BOVIN : 206- 237: eiikl EnSIrELhDMFmDMamLVeSQGemIDrIEyNV ehsvd SYNA_RAT : 206- 237: eiikl EnSIrELhDMFmDMamLVeSQGemIDrIEyNV ehavd SYNB_BOVIN : 205- 236: eiikl EtSIrELhDMFvDMamLVeSQGemIDrIEyNV ehsvd SYNB_RAT : 205- 236: eiikl EtSIrELhDMFvDMamLVeSQGemIDrIEyNV ehsvd B 2: 35.2979 10( 10) E-L-x(3)-F-x(0,1)-D-x(4)-[NV]-x(3)-[AGQ]-x(2)-[IV]-x(2)-I-x(2)-[NV]-[FIV] Occurences: 10(10) EPMO_HUMAN : 210- 236: etsir ELhemFmDmamfVetqGemInnIerNV mnatd EPMO_MOUSE : 211- 237: etsir ELhemFmDmamfVetqGemVnnIerNV vnsvd PE12_YEAST : 214- 240: ergit ELnevFkDlgsvVqqqGvlVdnIeaNI yttsd SED5_YEAST : 307- 332: sgaqr ELlkyF-DriksNrwlAakVffIifVF fviwv SSO1_YEAST : 209- 235: eksma ELtqlFnDmeelVieqQenVdvIdkNV edaql SSO2_YEAST : 213- 239: ektma ELtqlFnDmkelVieqQenVdvIdkNV edaqq SYNA_BOVIN : 211- 237: ensir ELhdmFmDmamlVesqGemIdrIeyNV ehsvd SYNA_RAT : 211- 237: ensir ELhdmFmDmamlVesqGemIdrIeyNV ehavd SYNB_BOVIN : 210- 236: etsir ELhdmFvDmamlVesqGemIdrIeyNV ehsvd SYNB_RAT : 210- 236: etsir ELhdmFvDmamlVesqGemIdrIeyNV ehsvd C 3: 26.9627 10( 10) V-x(3)-[EGQ]-E-x-[GIV]-[DGNQ]-x-I-x(2,3)-N-x(0,2)-V Occurences: 10(10) EPMO_HUMAN : 222- 236: dmamf VetqGEmINnIer-N--V mnatd EPMO_MOUSE : 223- 237: dmamf VetqGEmVNnIer-N--V vnsvd EPMO_MOUSE : 223- 238: dmamf VetqGEmVNnIer-Nv-V nsvdy PE12_YEAST : 76- 93: inkrs VakiEEiGGlIkkiNtsV kkmda SED5_YEAST : 280- 294: qlasm VqeqGEvIQrIda-N--V ddidl SSO1_YEAST : 221- 235: dmeel VieqQEnVDvIdk-N--V edaql SSO2_YEAST : 225- 239: dmkel VieqQEnVDvIdk-N--V edaqq SYNA_BOVIN : 223- 237: dmaml VesqGEmIDrIey-N--V ehsvd SYNA_RAT : 223- 237: dmaml VesqGEmIDrIey-N--V ehavd SYNB_BOVIN : 222- 236: dmaml VesqGEmIDrIey-N--V ehsvd SYNB_RAT : 222- 236: dmaml VesqGEmIDrIey-N--V ehsvd D 4: 23.6663 10( 10) V-x(0,2)-E-x(0,2)-E-x(2)-[DGNQS]-x-I-[ADES]-x(3)-[DEQ]-x(2)-[ADEQ] Occurences: 10(10) EPMO_HUMAN : 36- 51: dffhq V--E--EirNsIDkitQyvE evkkn EPMO_MOUSE : 37- 52: gffhq V--E--EirSsIAriaQhvE dvkkn PE12_YEAST : 33- 52: tlkee VaaElfEinGqIStlqQftA tlksf SED5_YEAST : 280- 298: qlasm Vq-EqgEviQrIDanvDdiD lnisg SSO1_YEAST : 221- 239: dmeel Vi-EqqEnvDvIDknvEdaQ ldveq SSO2_YEAST : 225- 243: dmkel Vi-EqqEnvDvIDknvEdaQ qdveq SYNA_BOVIN : 37- 52: effeq V--E--EirGfIDkisEnvE evkrk SYNA_RAT : 37- 52: effeq V--E--EirGfIDkiaEnvE evkrk SYNB_BOVIN : 36- 51: effeq V--E--EirGcIEklsEdvE qvkkq SYNB_RAT : 36- 51: effeq V--E--EirGcIEklsEdvE qvkkq E 5: 20.1143 10( 10) E-x-[GIV]-[DGNQ]-x-I-x(2,3)-N-x(0,2)-V Occurences: 10(10) EPMO_HUMAN : 227- 236: vetqg EmINnIer-N--V mnatd EPMO_MOUSE : 228- 237: vetqg EmVNnIer-N--V vnsvd EPMO_MOUSE : 228- 238: vetqg EmVNnIer-Nv-V nsvdy PE12_YEAST : 81- 93: vakie EiGGlIkkiNtsV kkmda SED5_YEAST : 285- 294: vqeqg EvIQrIda-N--V ddidl SSO1_YEAST : 226- 235: vieqq EnVDvIdk-N--V edaql SSO2_YEAST : 230- 239: vieqq EnVDvIdk-N--V edaqq SYNA_BOVIN : 228- 237: vesqg EmIDrIey-N--V ehsvd SYNA_RAT : 228- 237: vesqg EmIDrIey-N--V ehavd SYNB_BOVIN : 227- 236: vesqg EmIDrIey-N--V ehsvd SYNB_RAT : 227- 236: vesqg EmIDrIey-N--V ehsvd F 6: 20.0543 10( 10) V-x(0,2)-E-x(2,3)-E-x(2)-[DGNQ]-x-I-[DES] Occurences: 10(10) EPMO_HUMAN : 222- 233: dmamf V--EtqgEmiNnIE rnvmn EPMO_MOUSE : 223- 234: dmamf V--EtqgEmvNnIE rnvvn PE12_YEAST : 33- 45: tlkee VaaElf-EinGqIS tlqqf SED5_YEAST : 280- 291: qlasm Vq-Eqg-EviQrID anvdd SSO1_YEAST : 221- 232: dmeel Vi-Eqq-EnvDvID knved SSO2_YEAST : 225- 236: dmkel Vi-Eqq-EnvDvID knved SYNA_BOVIN : 223- 234: dmaml V--EsqgEmiDrIE ynveh SYNA_RAT : 223- 234: dmaml V--EsqgEmiDrIE ynveh SYNB_BOVIN : 222- 233: dmaml V--EsqgEmiDrIE ynveh SYNB_RAT : 222- 233: dmaml V--EsqgEmiDrIE ynveh G 7: 18.9628 10( 10) K-x-[AQ]-x(2)-A-x(0,1)-R-x(0,1)-K Occurences: 10(10) EPMO_HUMAN : 255- 263: tkkai KyQskArR-K kwiii EPMO_HUMAN : 255- 263: tkkai KyQskA-RrK kwiii EPMO_HUMAN : 255- 264: tkkai KyQskArRkK wiiia EPMO_MOUSE : 256- 264: tkkai KyQskArR-K kwiia EPMO_MOUSE : 256- 264: tkkai KyQskA-RrK kwiia EPMO_MOUSE : 256- 265: tkkai KyQskArRkK wiiaa PE12_YEAST : 106- 114: easld KtQiiA-ReK lvrdv SED5_YEAST : 74- 82: aqlls KlAvlAkR-K pmfnd SSO1_YEAST : 254- 261: tdkav KsArkA-R-K nkirc SSO2_YEAST : 258- 265: tnkav KsArkA-R-K nkirc SYNA_BOVIN : 256- 264: tkkav KyQskArR-K kimiv SYNA_BOVIN : 256- 264: tkkav KyQskA-RrK kimiv SYNA_BOVIN : 256- 265: tkkav KyQskArRkK imivi SYNA_RAT : 256- 264: tkkav KyQskArR-K kimii SYNA_RAT : 256- 264: tkkav KyQskA-RrK kimii SYNA_RAT : 256- 265: tkkav KyQskArRkK imiii SYNB_BOVIN : 255- 263: tkkav KyQskArR-K kimii SYNB_BOVIN : 255- 263: tkkav KyQskA-RrK kimii SYNB_BOVIN : 255- 264: tkkav KyQskArRkK imiii SYNB_RAT : 255- 263: tkkav KyQskArR-K kimii SYNB_RAT : 255- 263: tkkav KyQskA-RrK kimii SYNB_RAT : 255- 264: tkkav KyQskArRkK imiii H 8: 18.3660 15( 10) E-x(0,2)-E-x(4)-I-x(0,1)-K-x(4)-[AV] Occurences: 15(10) EPMO_HUMAN : 37- 50: ffhqv E--EirnsIdKitqyV eevkk EPMO_HUMAN : 248- 260: vehak E--EtkkaI-KyqskA rrkkw EPMO_MOUSE : 249- 261: vehak E--EtkkaI-KyqskA rrkkw PE12_YEAST : 80- 93: svaki E--EigglIkKintsV kkmda SED5_YEAST : 91- 105: ndnpv EiaElsflI-KrkiyA ieqsl SSO1_YEAST : 223- 238: eelvi EqqEnvdvIdKnvedA qldve SSO2_YEAST : 227- 242: kelvi EqqEnvdvIdKnvedA qqdve SYNA_BOVIN : 38- 51: ffeqv E--EirgfIdKisenV eevkr SYNA_BOVIN : 74- 89: ektke EleElmsdIkKtankV rsklk SYNA_BOVIN : 76- 89: tkeel E--ElmsdIkKtankV rsklk SYNA_RAT : 38- 51: ffeqv E--EirgfIdKiaenV eevkr SYNA_RAT : 74- 89: ektke EleElmsdIkKtankV rsklk SYNA_RAT : 76- 89: tkeel E--ElmsdIkKtankV rsklk SYNB_BOVIN : 37- 50: ffeqv E--EirgcIeKlsedV eqvkk SYNB_RAT : 37- 50: ffeqv E--EirgcIeKlsedV eqvkk I 9: 17.8317 10( 10) A-x-[DKR]-x(3)-K-x(1,3)-R-x(1,2)-K Occurences: 10(10) EPMO_HUMAN : 253- 263: eetkk AiKyqsKa--Rr-K kwiii EPMO_HUMAN : 253- 264: eetkk AiKyqsKar-Rk-K wiiia EPMO_HUMAN : 253- 264: eetkk AiKyqsKa--RrkK wiiia EPMO_MOUSE : 254- 264: eetkk AiKyqsKa--Rr-K kwiia EPMO_MOUSE : 254- 265: eetkk AiKyqsKar-Rk-K wiiaa EPMO_MOUSE : 254- 265: eetkk AiKyqsKa--RrkK wiiaa PE12_YEAST : 250- 262: dntql AsDelrKam-RyqK rtsrw SED5_YEAST : 304- 316: lnisg AqRellKyfdRi-K snrwl SSO1_YEAST : 252- 263: ghtdk AvKsarKa--RknK ircwl SSO2_YEAST : 256- 267: ghtnk AvKsarKa--RknK ircli SYNA_BOVIN : 254- 264: sdtkk AvKyqsKa--Rr-K kimiv SYNA_BOVIN : 254- 265: sdtkk AvKyqsKar-Rk-K imivi SYNA_BOVIN : 254- 265: sdtkk AvKyqsKa--RrkK imivi SYNA_RAT : 254- 264: sdtkk AvKyqsKa--Rr-K kimii SYNA_RAT : 254- 265: sdtkk AvKyqsKar-Rk-K imiii SYNA_RAT : 254- 265: sdtkk AvKyqsKa--RrkK imiii SYNB_BOVIN : 253- 263: sdtkk AvKyqsKa--Rr-K kimii SYNB_BOVIN : 253- 264: sdtkk AvKyqsKar-Rk-K imiii SYNB_BOVIN : 253- 264: sdtkk AvKyqsKa--RrkK imiii SYNB_RAT : 253- 263: sdtkk AvKyqsKa--Rr-K kimii SYNB_RAT : 253- 264: sdtkk AvKyqsKar-Rk-K imiii SYNB_RAT : 253- 264: sdtkk AvKyqsKa--RrkK imiii J 10: 17.2992 10( 10) L-x(4)-[AGST]-Q-x-[EST]-x-L Occurences: 10(10) EPMO_HUMAN : 112- 122: rtsvd LrirrTQhSvL srkfv EPMO_MOUSE : 113- 123: rtsvd LrirrTQhSvL srkfv PE12_YEAST : 37- 47: evaae LfeinGQiStL qqfta SED5_YEAST : 299- 309: vddid LnisgAQrElL kyfdr SSO1_YEAST : 80- 90: hlrhs LdnfvAQaTdL qfklk SSO2_YEAST : 84- 94: elrrs LddyiSQaTdL qyqlk SYNA_BOVIN : 113- 123: rssad LrirkTQhStL srkfv SYNA_RAT : 113- 123: rssad LrirkTQhStL srkfv SYNB_BOVIN : 112- 122: rssad LrirkTQhStL srkfv SYNB_RAT : 112- 122: rssad LrirkTQhStL srkfv K 11: 16.4470 10( 10) E-x(0,1)-Q-G-x(3)-[DNQT]-x(2)-[ADEQ] Occurences: 10(10) EPMO_HUMAN : 223- 233: mamfv EtQGemiNniE rnvmn EPMO_MOUSE : 224- 234: mamfv EtQGemvNniE rnvvn PE12_YEAST : 125- 135: sysfq EfQGiqrQftQ vmkqv SED5_YEAST : 282- 291: asmvq E-QGeviQriD anvdd SSO1_YEAST : 243- 252: aqldv E-QGvghTdkA vksar SSO2_YEAST : 247- 256: aqqdv E-QGvghTnkA vksar SYNA_BOVIN : 224- 234: mamlv EsQGemiDriE ynveh SYNA_RAT : 224- 234: mamlv EsQGemiDriE ynveh SYNB_BOVIN : 223- 233: mamlv EsQGemiDriE ynveh SYNB_RAT : 223- 233: mamlv EsQGemiDriE ynveh L 12: 15.1960 13( 10) E-x(4)-I-x(0,1)-K-x(4)-[AV] Occurences: 13(10) EPMO_HUMAN : 38- 50: fhqve EirnsIdKitqyV eevkk EPMO_HUMAN : 249- 260: ehake EtkkaI-KyqskA rrkkw EPMO_MOUSE : 250- 261: ehake EtkkaI-KyqskA rrkkw PE12_YEAST : 81- 93: vakie EigglIkKintsV kkmda SED5_YEAST : 94- 105: pveia ElsflI-KrkiyA ieqsl SSO1_YEAST : 226- 238: vieqq EnvdvIdKnvedA qldve SSO2_YEAST : 230- 242: vieqq EnvdvIdKnvedA qqdve SYNA_BOVIN : 39- 51: feqve EirgfIdKisenV eevkr SYNA_BOVIN : 77- 89: keele ElmsdIkKtankV rsklk SYNA_RAT : 39- 51: feqve EirgfIdKiaenV eevkr SYNA_RAT : 77- 89: keele ElmsdIkKtankV rsklk SYNB_BOVIN : 38- 50: feqve EirgcIeKlsedV eqvkk SYNB_RAT : 38- 50: feqve EirgcIeKlsedV eqvkk M 13: 15.1802 10( 10) E-x-L-x(2,4)-E-x(3,4)-A Occurences: 10(10) EPMO_HUMAN : 75- 85: ikeel EdLnk--EikktA nkiaa EPMO_MOUSE : 76- 86: ikeel EdLdk--EikktA nrirg PE12_YEAST : 146- 157: nerak EsLeas-EmandA allde SED5_YEAST : 30- 41: reqqr ErLqek-EsenfA nnttg SSO1_YEAST : 199- 208: qarhq ElLkl--Eksm-A eltql SSO2_YEAST : 203- 212: qarhq ElLkl--Ektm-A eltql SYNA_BOVIN : 163- 175: rttts EeLedmlEsgnpA ifasg SYNA_RAT : 163- 175: rttts EeLedmlEsgnpA ifasg SYNB_BOVIN : 162- 174: rtttn EeLedmlEsgklA iftdd SYNB_RAT : 162- 174: rtttn EeLedmlEsgklA iftdd N 14: 14.7224 14( 10) I-E-Q-[EQRS] Occurences: 14(10) EPMO_HUMAN : 95- 98: aklka IEQS fdqde EPMO_MOUSE : 96- 99: gklks IEQS cdqde PE12_YEAST : 198- 201: yqqnl IEQR dqeis SED5_YEAST : 106- 109: rkiya IEQS lvqls SSO1_YEAST : 222- 225: meelv IEQQ envdv SSO2_YEAST : 226- 229: mkelv IEQQ envdv SYNA_BOVIN : 96- 99: sklks IEQS ieqee SYNA_BOVIN : 100- 103: sieqs IEQE eglnr SYNA_RAT : 96- 99: sklks IEQS ieqee SYNA_RAT : 100- 103: sieqs IEQE eglnr SYNB_BOVIN : 95- 98: sklka IEQS ieqee SYNB_BOVIN : 99- 102: aieqs IEQE eglnr SYNB_RAT : 95- 98: sklka IEQS ieqee SYNB_RAT : 99- 102: aieqs IEQE eglnr O 15: 14.6186 12( 10) V-x(0,1)-E-x-A-x(2)-[DES] Occurences: 12(10) EPMO_HUMAN : 243- 249: natdy V-EhAkeE tkkai EPMO_MOUSE : 244- 250: nsvdy V-EhAkeE tkkai PE12_YEAST : 140- 147: qvmkq VnErAkeS lease SED5_YEAST : 90- 96: fndnp V-EiAelS flikr SSO1_YEAST : 160- 166: atede V-EaAisD vggqq SSO1_YEAST : 235- 241: vidkn V-EdAqlD veqgv SSO2_YEAST : 164- 170: atdee V-EaAinD vngqq SSO2_YEAST : 239- 245: vidkn V-EdAqqD veqgv SYNA_BOVIN : 244- 250: hsvdy V-ErAvsD tkkav SYNA_RAT : 244- 250: havdy V-ErAvsD tkkav SYNB_BOVIN : 243- 249: hsvdy V-ErAvsD tkkav SYNB_RAT : 243- 249: hsvdy V-ErAvsD tkkav P 16: 14.6186 12( 10) D-x(2,3)-E-x-A-x(2)-[DES] Occurences: 12(10) EPMO_HUMAN : 241- 249: vmnat Dyv-EhAkeE tkkai EPMO_MOUSE : 242- 250: vvnsv Dyv-EhAkeE tkkai PE12_YEAST : 97- 105: svkkm Dai-EeAslD ktqii SED5_YEAST : 87- 96: kpmfn DnpvEiAelS flikr SSO1_YEAST : 158- 166: peate Dev-EaAisD vggqq SSO1_YEAST : 232- 241: nvdvi DknvEdAqlD veqgv SSO2_YEAST : 161- 170: qpeat DeevEaAinD vngqq SSO2_YEAST : 236- 245: nvdvi DknvEdAqqD veqgv SYNA_BOVIN : 242- 250: vehsv Dyv-ErAvsD tkkav SYNA_RAT : 242- 250: vehav Dyv-ErAvsD tkkav SYNB_BOVIN : 241- 249: vehsv Dyv-ErAvsD tkkav SYNB_RAT : 241- 249: vehsv Dyv-ErAvsD tkkav Q 17: 14.1875 10( 10) K-x(0,1)-Q-x(2)-A-x-[ENQR] Occurences: 10(10) EPMO_HUMAN : 255- 262: tkkai KyQskArR kkwii EPMO_MOUSE : 256- 263: tkkai KyQskArR kkwii PE12_YEAST : 106- 113: easld KtQiiArE klvrd SED5_YEAST : 131- 137: snqss K-QpsAvQ hsknv SSO1_YEAST : 111- 117: ihdtn K-QaqAeN srqrf SSO2_YEAST : 115- 121: lhdsn K-QaqAeN crqkf SYNA_BOVIN : 256- 263: tkkav KyQskArR kkimi SYNA_RAT : 256- 263: tkkav KyQskArR kkimi SYNB_BOVIN : 255- 262: tkkav KyQskArR kkimi SYNB_RAT : 255- 262: tkkav KyQskArR kkimi R 18: 13.6658 23( 10) E-x(2,3)-E-x(2)-[DEGNQS]-x-I Occurences: 23(10) EPMO_HUMAN : 223- 232: mamfv EtqgEmiNnI ernvm EPMO_MOUSE : 224- 233: mamfv EtqgEmvNnI ernvv PE12_YEAST : 36- 44: eevaa Elf-EinGqI stlqq SED5_YEAST : 282- 290: asmvq Eqg-EviQrI danvd SSO1_YEAST : 18- 26: feesy Eld-EgsSaI gaegh SSO1_YEAST : 223- 231: eelvi Eqq-EnvDvI dknve SSO2_YEAST : 227- 235: kelvi Eqq-EnvDvI dknve SYNA_BOVIN : 32- 40: drfmd Eff-EqvEeI rgfid SYNA_BOVIN : 35- 44: mdeff EqveEirGfI dkise SYNA_BOVIN : 73- 82: dektk EeleElmSdI kktan SYNA_BOVIN : 74- 82: ektke Ele-ElmSdI kktan SYNA_BOVIN : 224- 233: mamlv EsqgEmiDrI eynve SYNA_RAT : 32- 40: drfmd Eff-EqvEeI rgfid SYNA_RAT : 35- 44: mdeff EqveEirGfI dkiae SYNA_RAT : 73- 82: dektk EeleElmSdI kktan SYNA_RAT : 74- 82: ektke Ele-ElmSdI kktan SYNA_RAT : 224- 233: mamlv EsqgEmiDrI eynve SYNB_BOVIN : 31- 39: dhfmd Eff-EqvEeI rgcie SYNB_BOVIN : 34- 43: mdeff EqveEirGcI eklse SYNB_BOVIN : 223- 232: mamlv EsqgEmiDrI eynve SYNB_RAT : 31- 39: dhfmd Eff-EqvEeI rgcie SYNB_RAT : 34- 43: mdeff EqveEirGcI eklse SYNB_RAT : 223- 232: mamlv EsqgEmiDrI eynve S 19: 12.0102 20( 10) I-x(2,3)-I-x(3)-V Occurences: 20(10) EPMO_HUMAN : 43- 50: eirns Idk-ItqyV eevkk EPMO_HUMAN : 229- 236: tqgem Inn-IernV mnatd EPMO_HUMAN : 278- 286: vlvvi IvliIglsV gk EPMO_MOUSE : 44- 51: eirss Iar-IaqhV edvkk PE12_YEAST : 86- 93: eiggl Ikk-IntsV kkmda SED5_YEAST : 287- 294: eqgev Iqr-IdanV ddidl SSO1_YEAST : 269- 277: ircwl IvfaIivvV vvvvv SSO2_YEAST : 273- 281: ircli IcfiIfaiV vvvvv SSO2_YEAST : 276- 284: liicf IifaIvvvV vvvps SSO2_YEAST : 277- 284: iicfi Ifa-IvvvV vvvps SYNA_BOVIN : 44- 51: eirgf Idk-IsenV eevkr SYNA_BOVIN : 230- 237: sqgem Idr-IeynV ehsvd SYNA_BOVIN : 266- 274: arrkk ImivIccvV lgivi SYNA_RAT : 44- 51: eirgf Idk-IaenV eevkr SYNA_RAT : 230- 237: sqgem Idr-IeynV ehavd SYNA_RAT : 266- 273: arrkk Imi-IiccV ilgii SYNB_BOVIN : 229- 236: sqgem Idr-IeynV ehsvd SYNB_BOVIN : 265- 272: arrkk Imi-IiccV vlgvv SYNB_BOVIN : 265- 273: arrkk ImiiIccvV lgvvl SYNB_RAT : 229- 236: sqgem Idr-IeynV ehsvd SYNB_RAT : 265- 272: arrkk Imi-IiccV vlgvv SYNB_RAT : 265- 273: arrkk ImiiIccvV lgvvl T 20: 12.0102 17( 10) S-x(3,4)-R-K Occurences: 17(10) EPMO_HUMAN : 120- 125: rrtqh Svls-RK fveam EPMO_HUMAN : 258- 263: aikyq Skar-RK kwiii EPMO_MOUSE : 121- 126: rrtqh Svls-RK fvdvm EPMO_MOUSE : 259- 264: aikyq Skar-RK kwiia PE12_YEAST : 251- 256: ntqla Sdel-RK amryq SED5_YEAST : 96- 102: eiael SflikRK iyaie SSO1_YEAST : 255- 261: dkavk SarkaRK nkirc SSO2_YEAST : 259- 265: nkavk SarkaRK nkirc SSO2_YEAST : 289- 295: vvvvp SvvetRK SYNA_BOVIN : 121- 126: rktqh Stls-RK fvevm SYNA_BOVIN : 259- 264: avkyq Skar-RK kimiv SYNA_RAT : 121- 126: rktqh Stls-RK fvevm SYNA_RAT : 259- 264: avkyq Skar-RK kimii SYNB_BOVIN : 120- 125: rktqh Stls-RK fvevm SYNB_BOVIN : 258- 263: avkyq Skar-RK kimii SYNB_RAT : 120- 125: rktqh Stls-RK fvevm SYNB_RAT : 258- 263: avkyq Skar-RK kimii Number of patterns evaluated by Pratt:4868 Total running time: 3 seconds