------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file ENDONUCLEASE_III_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ENDONUCLEASE_III_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: END3_BACSU 219 END3_ECOLI 211 END3_HAEIN 211 GTMR_METTF 221 MUTY_ECOLI 350 MUTY_HAEIN 378 MUTY_SALTY 350 UVEN_MICLU 268 YAB5_YEAST 399 Pratt run started at Thu Feb 6 19:25:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.3503 9( 9) L-x-G-V-G-x(3,4)-A 2: 16.1802 9( 9) G-V-G-x(3,4)-A 3: 15.6802 9( 9) V-G-x(2)-T-x(0,2)-A 4: 15.6802 10( 9) L-x(1,2)-L-x(1,2)-G-x-G 5: 15.6802 10( 9) L-x(3,4)-G-x-G-x(3,4)-A 6: 15.1802 13( 9) L-x(3,4)-G-x(2)-T-x(0,2)-A 7: 12.5102 9( 9) G-x-K-x(5)-L 8: 12.0102 11( 9) L-x(0,1)-G-x(5)-A 9: 12.0102 12( 9) L-x(3)-G-x(2,3)-T 10: 12.0102 13( 9) E-x(3,4)-L-x(2)-V 11: 12.0102 13( 9) R-x(1,2)-A-x(3)-L 12: 12.0102 12( 9) L-x(2)-L-x(2,3)-V 13: 12.0102 15( 9) E-x(1,2)-L-x(2)-L 14: 12.0102 9( 9) G-x(5)-A-x(1,2)-I 15: 12.0102 11( 9) L-x-L-x(3,4)-G 16: 12.0102 10( 9) K-x(4,5)-L-x(4)-E 17: 11.5102 13( 9) G-x(2)-T-x(0,2)-A 18: 11.5102 15( 9) L-x-L-x(1,3)-G 19: 11.5102 21( 9) L-x(1,2)-L-x(1,2)-G 20: 11.5102 17( 9) E-x(1,2)-L-x(0,1)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 42.6693 9( 9) L-x-G-[FV]-G-x(2,3)-T-x(4)-[LMV]-[CGNS]-x(2)-[FL]-[GNQ]-x(3)-[AIP]-x(2)-[DP]-x(4)-[DR]-x(3)-[QR] B 2: 25.5667 9( 9) L-[APS]-G-V-G-x(3,4)-A-x-[ALV] C 3: 22.8476 9( 9) L-x(3,4)-G-x(2)-T-x(0,2)-A-x(3)-[LV]-[AGNS]-x-[ACGV] D 4: 20.0305 9( 9) L-x(0,1)-G-[LV]-x(4)-A-x-[AILV]-x-[ALV] E 5: 19.1776 9( 9) G-x(2)-T-x(0,2)-A-x(3)-[LV]-[AGNS]-x-[ACGV] F 6: 18.8639 10( 9) L-x(3,4)-G-[LV]-G-x(3,4)-A G 7: 18.8639 10( 9) L-x(1,2)-L-x(1,2)-G-[LV]-G H 8: 18.7776 9( 9) G-V-G-x(3,4)-A-x-[ALV] I 9: 18.4764 9( 9) V-G-x(2)-T-x(0,2)-A-x(2)-[IMV] J 10: 17.2668 9( 9) E-x(1,2)-L-x(2)-L-x-[EHR]-x-[GNV] K 11: 14.6600 9( 9) G-[FLV]-x(4)-A-x(1,2)-I L 12: 14.6331 11( 9) E-x(3,4)-L-x(2)-V-[GPV] M 13: 14.6189 10( 9) L-x(2)-L-x(2,3)-V-[GTV] N 14: 12.5102 9( 9) G-x-K-x(5)-L O 15: 12.0102 13( 9) R-x(1,2)-A-x(3)-L P 16: 12.0102 11( 9) L-x-L-x(3,4)-G Q 17: 12.0102 10( 9) K-x(4,5)-L-x(4)-E R 18: 11.5102 13( 9) G-x(2)-T-x(0,2)-A S 19: 11.5102 15( 9) L-x-L-x(1,3)-G T 20: 11.5102 21( 9) L-x(1,2)-L-x(1,2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 42.6693 9( 9) L-x-G-[FV]-G-x(2,3)-T-x(4)-[LMV]-[CGNS]-x(2)-[FL]-[GNQ]-x(3)-[AIP]-x(2)-[DP]-x(4)-[DR]-x(3)-[QR] Occurences: 9(9) END3_BACSU : 115- 148: delvk LpGVGrk-TanvvVSvaFGvpaIavDthveRvskR lgicr END3_ECOLI : 114- 147: aalea LpGVGrk-TanvvLNtaFGwptIavDthifRvcnR tqfap END3_HAEIN : 114- 147: ealea LaGVGrk-TanvvLNtaFGhptIavDthifRvcnR tnfaa GTMR_METTF : 120- 153: kaild LpGVGky-TcaavMClaFGkkaAmvDanfvRvinR yfggs MUTY_ECOLI : 114- 147: eevaa LpGVGrs-TagaiLSlsLGkhfPilDgnvkRvlaR cyavs MUTY_HAEIN : 119- 152: eqvwa LsGVGrs-TagaiLSsvLNqpyPilDgnvkRvlaR yfave MUTY_SALTY : 114- 147: aeiaa LpGVGrs-TagaiLSlaLGkhyPilDgnvkRvlaR cyavs UVEN_MICLU : 129- 162: edlva LpGVGrk-TafvvLGnaFGqpgItvDthfgRlarR lgftd YAB5_YEAST : 306- 340: eingl LvGFGqiiTksrnLGdmLQflpPddPrsslDwdlQ sqlyk B 2: 25.5667 9( 9) L-[APS]-G-V-G-x(3,4)-A-x-[ALV] Occurences: 9(9) END3_BACSU : 115- 125: delvk LPGVGrkt-AnV vvsva END3_ECOLI : 114- 124: aalea LPGVGrkt-AnV vlnta END3_HAEIN : 114- 124: ealea LAGVGrkt-AnV vlnta GTMR_METTF : 120- 131: kaild LPGVGkytcAaV mclaf MUTY_ECOLI : 114- 124: eevaa LPGVGrst-AgA ilsls MUTY_HAEIN : 119- 129: eqvwa LSGVGrst-AgA ilssv MUTY_SALTY : 114- 124: aeiaa LPGVGrst-AgA ilsla UVEN_MICLU : 129- 139: edlva LPGVGrkt-AfV vlgna YAB5_YEAST : 237- 247: nellg LPGVGpkm-AyL tlqka C 3: 22.8476 9( 9) L-x(3,4)-G-x(2)-T-x(0,2)-A-x(3)-[LV]-[AGNS]-x-[ACGV] Occurences: 9(9) END3_BACSU : 115- 130: delvk Lpgv-GrkT--AnvvVSvA fgvpa END3_ECOLI : 114- 129: aalea Lpgv-GrkT--AnvvLNtA fgwpt END3_HAEIN : 114- 129: ealea Lagv-GrkT--AnvvLNtA fghpt GTMR_METTF : 120- 137: kaild Lpgv-GkyTcaAvmcLAfG kkaam MUTY_ECOLI : 114- 131: eevaa Lpgv-GrsTagAilsLSlG khfpi MUTY_HAEIN : 119- 134: eqvwa Lsgv-GrsT--AgaiLSsV lnqpy MUTY_SALTY : 114- 129: aeiaa Lpgv-GrsT--AgaiLSlA lgkhy MUTY_SALTY : 114- 131: aeiaa Lpgv-GrsTagAilsLAlG khypi UVEN_MICLU : 129- 144: edlva Lpgv-GrkT--AfvvLGnA fgqpg YAB5_YEAST : 198- 216: tklde LihsvGfhTrkAkyiLStC kilqd D 4: 20.0305 9( 9) L-x(0,1)-G-[LV]-x(4)-A-x-[AILV]-x-[ALV] Occurences: 9(9) END3_BACSU : 115- 127: delvk LpGVgrktAnVvV svafg END3_ECOLI : 114- 126: aalea LpGVgrktAnVvL ntafg END3_HAEIN : 114- 126: ealea LaGVgrktAnVvL ntafg GTMR_METTF : 187- 198: crdfn L-GLmdfsAiIcA prkpk MUTY_ECOLI : 114- 126: eevaa LpGVgrstAgAiL slslg MUTY_HAEIN : 119- 131: eqvwa LsGVgrstAgAiL ssvln MUTY_SALTY : 114- 126: aeiaa LpGVgrstAgAiL slalg UVEN_MICLU : 129- 141: edlva LpGVgrktAfVvL gnafg YAB5_YEAST : 237- 249: nellg LpGVgpkmAyLtL qkawg E 5: 19.1776 9( 9) G-x(2)-T-x(0,2)-A-x(3)-[LV]-[AGNS]-x-[ACGV] Occurences: 9(9) END3_BACSU : 119- 130: klpgv GrkT--AnvvVSvA fgvpa END3_ECOLI : 118- 129: alpgv GrkT--AnvvLNtA fgwpt END3_HAEIN : 118- 129: alagv GrkT--AnvvLNtA fghpt GTMR_METTF : 124- 137: dlpgv GkyTcaAvmcLAfG kkaam MUTY_ECOLI : 118- 131: alpgv GrsTagAilsLSlG khfpi MUTY_HAEIN : 123- 134: alsgv GrsT--AgaiLSsV lnqpy MUTY_SALTY : 118- 129: alpgv GrsT--AgaiLSlA lgkhy MUTY_SALTY : 118- 131: alpgv GrsTagAilsLAlG khypi UVEN_MICLU : 133- 144: alpgv GrkT--AfvvLGnA fgqpg YAB5_YEAST : 203- 216: lihsv GfhTrkAkyiLStC kilqd F 6: 18.8639 10( 9) L-x(3,4)-G-[LV]-G-x(3,4)-A Occurences: 10(9) END3_BACSU : 112- 123: rdrde LvklpGVGrkt-A nvvvs END3_ECOLI : 111- 122: edraa LealpGVGrkt-A nvvln END3_HAEIN : 111- 122: enrea LealaGVGrkt-A nvvln GTMR_METTF : 118- 129: nrkai Ldlp-GVGkytcA avmcl MUTY_ECOLI : 74- 86: pldev LhlwtGLGyyarA rnlhk MUTY_HAEIN : 79- 91: sqdev LhlwtGLGyyarA rnlhk MUTY_SALTY : 74- 86: pldev LhlwtGLGyyarA rnlhk UVEN_MICLU : 126- 137: arled LvalpGVGrkt-A fvvlg YAB5_YEAST : 234- 245: atine LlglpGVGpkm-A yltlq YAB5_YEAST : 235- 245: tinel Lglp-GVGpkm-A yltlq G 7: 18.8639 10( 9) L-x(1,2)-L-x(1,2)-G-[LV]-G Occurences: 10(9) END3_BACSU : 112- 119: rdrde LvkLp-GVG rktan END3_ECOLI : 111- 118: edraa LeaLp-GVG rktan END3_HAEIN : 111- 118: enrea LeaLa-GVG rktan GTMR_METTF : 118- 124: nrkai Ld-Lp-GVG kytca MUTY_ECOLI : 74- 81: pldev Lh-LwtGLG yyara MUTY_HAEIN : 79- 86: sqdev Lh-LwtGLG yyara MUTY_SALTY : 74- 81: pldev Lh-LwtGLG yyara UVEN_MICLU : 126- 133: arled LvaLp-GVG rktaf YAB5_YEAST : 234- 241: atine LlgLp-GVG pkmay YAB5_YEAST : 235- 241: tinel Lg-Lp-GVG pkmay H 8: 18.7776 9( 9) G-V-G-x(3,4)-A-x-[ALV] Occurences: 9(9) END3_BACSU : 117- 125: lvklp GVGrkt-AnV vvsva END3_ECOLI : 116- 124: lealp GVGrkt-AnV vlnta END3_HAEIN : 116- 124: leala GVGrkt-AnV vlnta GTMR_METTF : 122- 131: ildlp GVGkytcAaV mclaf MUTY_ECOLI : 116- 124: vaalp GVGrst-AgA ilsls MUTY_HAEIN : 121- 129: vwals GVGrst-AgA ilssv MUTY_SALTY : 116- 124: iaalp GVGrst-AgA ilsla UVEN_MICLU : 131- 139: lvalp GVGrkt-AfV vlgna YAB5_YEAST : 239- 247: llglp GVGpkm-AyL tlqka I 9: 18.4764 9( 9) V-G-x(2)-T-x(0,2)-A-x(2)-[IMV] Occurences: 9(9) END3_BACSU : 118- 126: vklpg VGrkT--AnvV vsvaf END3_ECOLI : 117- 125: ealpg VGrkT--AnvV lntaf END3_HAEIN : 117- 125: ealag VGrkT--AnvV lntaf GTMR_METTF : 123- 132: ldlpg VGkyTc-AavM clafg MUTY_ECOLI : 117- 125: aalpg VGrsT--AgaI lslsl MUTY_HAEIN : 122- 130: walsg VGrsT--AgaI lssvl MUTY_SALTY : 117- 125: aalpg VGrsT--AgaI lslal UVEN_MICLU : 132- 140: valpg VGrkT--AfvV lgnaf YAB5_YEAST : 202- 212: elihs VGfhTrkAkyI lstck J 10: 17.2668 9( 9) E-x(1,2)-L-x(2)-L-x-[EHR]-x-[GNV] Occurences: 9(9) END3_BACSU : 198- 208: sprca EcpLlsLcReG qkrdk END3_ECOLI : 8- 17: kakrl Ei-LtrLrEnN phptt END3_HAEIN : 8- 17: ktkri Ei-LtrLrEqN phptt GTMR_METTF : 93- 102: snqra Eq-LkeLaRvV indyg MUTY_ECOLI : 161- 171: gkkev EnkLwsLsEqV tpavg MUTY_HAEIN : 166- 176: gekkv EnrLwaLtEqV tpttr MUTY_SALTY : 161- 171: gkkev EntLwtLsEqV tparg UVEN_MICLU : 245- 254: lkpgr Ee-LleLlRaG rtaga YAB5_YEAST : 192- 202: vlqin EtkLdeLiHsV gfhtr K 11: 14.6600 9( 9) G-[FLV]-x(4)-A-x(1,2)-I Occurences: 9(9) END3_BACSU : 81- 90: diksi GLyrnkAknI qklsk END3_ECOLI : 80- 89: yikti GLynskAenI iktcr END3_HAEIN : 80- 89: yikti GLfnskAenI iktcr GTMR_METTF : 188- 196: rdfnl GLmdfsAi-I caprk MUTY_ECOLI : 116- 125: vaalp GVgrstAgaI lslsl MUTY_HAEIN : 121- 130: vwals GVgrstAgaI lssvl MUTY_SALTY : 116- 125: iaalp GVgrstAgaI lslal UVEN_MICLU : 95- 104: lvrst GFyrnkAsaI lrlsq YAB5_YEAST : 203- 212: lihsv GFhtrkAkyI lstck L 12: 14.6331 11( 9) E-x(3,4)-L-x(2)-V-[GPV] Occurences: 11(9) END3_BACSU : 111- 119: prdrd Elvk-LpgVG rktan END3_ECOLI : 160- 168: nveqv Eekl-LkvVP aefkv END3_HAEIN : 109- 118: vpenr EaleaLagVG rktan END3_HAEIN : 160- 168: dvvkv Eekl-LkvVP nefkv GTMR_METTF : 93- 102: snqra EqlkeLarVV indyg MUTY_ECOLI : 109- 118: fpetf EevaaLpgVG rstag MUTY_ECOLI : 110- 118: petfe Evaa-LpgVG rstag MUTY_HAEIN : 114- 123: fptnf EqvwaLsgVG rstag MUTY_SALTY : 110- 118: pqtfa Eiaa-LpgVG rstag UVEN_MICLU : 124- 133: vparl EdlvaLpgVG rktaf YAB5_YEAST : 233- 241: patin Ellg-LpgVG pkmay M 13: 14.6189 10( 9) L-x(2)-L-x(2,3)-V-[GTV] Occurences: 10(9) END3_BACSU : 112- 119: rdrde LvkLpg-VG rktan END3_ECOLI : 111- 118: edraa LeaLpg-VG rktan END3_HAEIN : 111- 118: enrea LeaLag-VG rktan GTMR_METTF : 95- 102: qraeq LkeLar-VV indyg MUTY_ECOLI : 164- 172: evenk LwsLseqVT pavgv MUTY_HAEIN : 169- 177: kvenr LwaLteqVT pttrv MUTY_SALTY : 164- 172: event LwtLseqVT pargv UVEN_MICLU : 126- 133: arled LvaLpg-VG rktaf YAB5_YEAST : 195- 203: inetk LdeLihsVG fhtrk YAB5_YEAST : 234- 241: atine LlgLpg-VG pkmay N 14: 12.5102 9( 9) G-x-K-x(5)-L Occurences: 9(9) END3_BACSU : 208- 216: slcre GqKrdkkgL vkr END3_ECOLI : 118- 126: alpgv GrKtanvvL ntafg END3_HAEIN : 118- 126: alagv GrKtanvvL ntafg GTMR_METTF : 179- 187: etlvp GgKcrdfnL glmdf MUTY_ECOLI : 156- 164: vsgwp GkKevenkL wslse MUTY_HAEIN : 161- 169: vegws GeKkvenrL walte MUTY_SALTY : 156- 164: vsgwp GkKeventL wtlse UVEN_MICLU : 133- 141: alpgv GrKtafvvL gnafg YAB5_YEAST : 241- 249: glpgv GpKmayltL qkawg O 15: 12.0102 13( 9) R-x(1,2)-A-x(3)-L Occurences: 13(9) END3_BACSU : 195- 201: kaqsp Rc-AecpL lslcr END3_ECOLI : 108- 114: evped Ra-AleaL pgvgr END3_ECOLI : 119- 126: lpgvg RktAnvvL ntafg END3_HAEIN : 108- 114: evpen Re-AleaL agvgr END3_HAEIN : 119- 126: lagvg RktAnvvL ntafg GTMR_METTF : 114- 120: rvprn Rk-AildL pgvgk MUTY_ECOLI : 119- 126: lpgvg RstAgaiL slslg MUTY_ECOLI : 277- 284: qwlaq RqiAadnL tqlta MUTY_HAEIN : 124- 131: lsgvg RstAgaiL ssvln MUTY_SALTY : 119- 126: lpgvg RstAgaiL slalg UVEN_MICLU : 98- 105: stgfy RnkAsaiL rlsqe UVEN_MICLU : 134- 141: lpgvg RktAfvvL gnafg YAB5_YEAST : 207- 213: vgfht Rk-AkyiL stcki P 16: 12.0102 11( 9) L-x-L-x(3,4)-G Occurences: 11(9) END3_BACSU : 202- 208: aecpl LsLcre-G qkrdk END3_ECOLI : 65- 71: tpaam LeLgve-G vktyi END3_HAEIN : 65- 71: tpqai LdLgld-G lksyi GTMR_METTF : 118- 124: nrkai LdLpgv-G kytca MUTY_ECOLI : 74- 81: pldev LhLwtglG yyara MUTY_HAEIN : 79- 86: sqdev LhLwtglG yyara MUTY_HAEIN : 241- 247: kttyf LiLskn-G kvcle MUTY_SALTY : 74- 81: pldev LhLwtglG yyara UVEN_MICLU : 248- 254: greel LeLlra-G rtaga YAB5_YEAST : 235- 241: tinel LgLpgv-G pkmay YAB5_YEAST : 247- 254: pkmay LtLqkawG kiegi Q 17: 12.0102 10( 9) K-x(4,5)-L-x(4)-E Occurences: 10(9) END3_BACSU : 60- 71: lfqky KrpedyLavplE elqqd END3_ECOLI : 5- 15: mnka Krlei-LtrlrE nnphp END3_HAEIN : 5- 15: mnkt Kriei-LtrlrE qnphp GTMR_METTF : 206- 217: kpkce KcgmskLcsyyE kcst MUTY_ECOLI : 158- 169: gwpgk KevenkLwslsE qvtpa MUTY_HAEIN : 163- 174: gwsge KkvenrLwaltE qvtpt MUTY_HAEIN : 164- 174: wsgek Kvenr-LwaltE qvtpt MUTY_SALTY : 158- 169: gwpgk KeventLwtlsE qvtpa UVEN_MICLU : 100- 110: gfyrn Kasai-LrlsqE lvgrh YAB5_YEAST : 356- 366: imsyp Kwvky-LegkrE lnvea R 18: 11.5102 13( 9) G-x(2)-T-x(0,2)-A Occurences: 13(9) END3_BACSU : 119- 123: klpgv GrkT--A nvvvs END3_ECOLI : 118- 122: alpgv GrkT--A nvvln END3_ECOLI : 131- 136: lntaf GwpTi-A vdthi END3_ECOLI : 183- 189: wlilh GryTciA rkprc END3_HAEIN : 118- 122: alagv GrkT--A nvvln END3_HAEIN : 131- 136: lntaf GhpTi-A vdthi END3_HAEIN : 183- 189: wlilh GryTciA rkprc GTMR_METTF : 124- 129: dlpgv GkyTc-A avmcl GTMR_METTF : 124- 130: dlpgv GkyTcaA vmcla MUTY_ECOLI : 118- 122: alpgv GrsT--A gails MUTY_ECOLI : 118- 124: alpgv GrsTagA ilsls MUTY_HAEIN : 123- 127: alsgv GrsT--A gails MUTY_HAEIN : 123- 129: alsgv GrsTagA ilssv MUTY_SALTY : 118- 122: alpgv GrsT--A gails MUTY_SALTY : 118- 124: alpgv GrsTagA ilsla UVEN_MICLU : 133- 137: alpgv GrkT--A fvvlg YAB5_YEAST : 203- 209: lihsv GfhTrkA kyils S 19: 11.5102 15( 9) L-x-L-x(1,3)-G Occurences: 15(9) END3_BACSU : 202- 208: aecpl LsLcreG qkrdk END3_ECOLI : 65- 71: tpaam LeLgveG vktyi END3_ECOLI : 179- 183: dchhw LiLh--G rytci END3_HAEIN : 65- 71: tpqai LdLgldG lksyi END3_HAEIN : 67- 71: qaild LgLd--G lksyi END3_HAEIN : 179- 183: dvhhw LiLh--G rytci GTMR_METTF : 118- 122: nrkai LdLp--G vgkyt GTMR_METTF : 118- 124: nrkai LdLpgvG kytca MUTY_ECOLI : 74- 79: pldev LhLwt-G lgyya MUTY_ECOLI : 126- 131: tagai LsLsl-G khfpi MUTY_HAEIN : 79- 84: sqdev LhLwt-G lgyya MUTY_HAEIN : 241- 247: kttyf LiLsknG kvcle MUTY_SALTY : 74- 79: pldev LhLwt-G lgyya MUTY_SALTY : 126- 131: tagai LsLal-G khypi UVEN_MICLU : 248- 254: greel LeLlraG rtaga YAB5_YEAST : 235- 239: tinel LgLp--G vgpkm YAB5_YEAST : 235- 241: tinel LgLpgvG pkmay T 20: 11.5102 21( 9) L-x(1,2)-L-x(1,2)-G Occurences: 21(9) END3_BACSU : 112- 117: rdrde LvkLp-G vgrkt END3_ECOLI : 111- 116: edraa LeaLp-G vgrkt END3_ECOLI : 179- 183: dchhw Li-Lh-G rytci END3_HAEIN : 67- 71: qaild Lg-Ld-G lksyi END3_HAEIN : 111- 116: enrea LeaLa-G vgrkt END3_HAEIN : 179- 183: dvhhw Li-Lh-G rytci GTMR_METTF : 118- 122: nrkai Ld-Lp-G vgkyt MUTY_ECOLI : 74- 79: pldev Lh-LwtG lgyya MUTY_ECOLI : 126- 131: tagai Ls-LslG khfpi MUTY_ECOLI : 201- 207: kpkcs LcpLqnG ciaaa MUTY_ECOLI : 341- 347: pverl LqqLrtG apv MUTY_HAEIN : 79- 84: sqdev Lh-LwtG lgyya MUTY_SALTY : 74- 79: pldev Lh-LwtG lgyya MUTY_SALTY : 126- 131: tagai Ls-LalG khypi MUTY_SALTY : 201- 207: kpkct LcpLqnG ciaaa MUTY_SALTY : 341- 347: pverl LqqLrtG apv UVEN_MICLU : 126- 131: arled LvaLp-G vgrkt UVEN_MICLU : 248- 254: greel LelLraG rtaga YAB5_YEAST : 144- 149: prdyr LqvLl-G vmlss YAB5_YEAST : 234- 239: atine LlgLp-G vgpkm YAB5_YEAST : 235- 239: tinel Lg-Lp-G vgpkm Number of patterns evaluated by Pratt:2060 Total running time: 1 seconds