------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file EF1_BD_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename EF1_BD_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: EF1B_ARTSA 206 EF1B_BOMMO 221 EF1B_HUMAN 224 EF1B_ORYSA 222 EF1B_PIG 224 EF1B_RABIT 224 EF1B_TRYCR 222 EF1B_WHEAT 215 EF1B_XENLA 227 EF1B_YEAST 205 EF1D_ARTSA 237 EF1D_HUMAN 281 EF1D_XENLA 265 EF1X_CAEEL 213 Pratt run started at Thu Feb 6 19:25:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.6904 15( 14) E-x(1,2)-V-Q-S-x-D-x(2)-A-x(2)-K 2: 24.0203 14( 14) V-Q-S-x-D-x(1,2)-A-x(2,3)-K 3: 24.0203 15( 14) E-x(1,2)-V-Q-S-x-D-x(1,2)-A 4: 20.8503 14( 14) K-P-W-D-D 5: 20.3503 28( 14) S-x(3,4)-D-x-K-x(2)-D-D 6: 19.8503 14( 14) Q-S-x-D-x(1,2)-A-x(2,3)-K 7: 19.8503 26( 14) D-x-D-x(1,3)-D-L-F 8: 16.6802 14( 14) P-W-D-D 9: 16.6802 16( 14) D-x-K-x(2)-D-D 10: 16.1802 16( 14) D-x(0,1)-K-x(2)-D-D 11: 16.1802 28( 14) D-D-x(1,2)-D-L 12: 16.1802 26( 14) D-x(2,3)-D-L-F 13: 15.6802 14( 14) S-x-D-x(1,2)-A-x(2,3)-K 14: 15.6802 18( 14) D-x-K-x(3)-D-x(0,2)-D 15: 15.6802 22( 14) D-x(0,1)-D-x(3,4)-D-x(3)-E 16: 15.6802 15( 14) F-x(1,2)-D-x(4,5)-D-x(2)-A 17: 15.6802 19( 14) D-x(2)-G-x(3,4)-E-x(0,1)-E 18: 15.6802 20( 14) D-x(4)-D-D-x(1,3)-D 19: 15.6802 20( 14) D-x(3,4)-D-D-x(2,3)-D 20: 15.6802 39( 14) D-x(1,3)-D-L-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 51.6828 14( 14) K-P-W-D-D-[ET]-x(2)-[LM]-x(2)-[LM]-x(3)-[LV]-x-[AST]-[IV]-x(2)-[DE]-G-L B 2: 47.5128 14( 14) P-W-D-D-[ET]-x(2)-[LM]-x(2)-[LM]-x(3)-[LV]-x-[AST]-[IV]-x(2)-[DE]-G-L C 3: 40.9335 15( 14) E-x(1,2)-V-Q-S-x-D-[IV]-[AV]-A-x-[NQ]-K-[ILV] D 4: 34.0228 15( 14) E-x(1,2)-V-Q-S-x-D-x(1,2)-A-x-[NQ]-K-[ILV] E 5: 28.9962 28( 14) S-x(3,4)-D-x-K-[DP]-x-D-D-x-[DTV]-x-[FLM] F 6: 26.6821 14( 14) V-Q-S-x-D-x(1,2)-A-x(2,3)-K-[ILV] G 7: 25.3261 16( 14) D-x-K-[DP]-x-D-D-x-[DTV]-x-[FLM] H 8: 24.8261 16( 14) D-x(0,1)-K-[DP]-x-D-D-x-[DTV]-x-[FLM] I 9: 22.5121 14( 14) Q-S-x-D-x(1,2)-A-x(2,3)-K-[ILV] J 10: 22.5008 26( 14) D-[DEG]-D-x(1,3)-D-L-F K 11: 20.5306 18( 14) D-x-[FV]-G-x(3,4)-E-x(0,1)-E-[ADEQST] L 12: 19.2471 18( 14) D-x-K-x(3)-D-x(0,2)-D-[LM] M 13: 18.3420 14( 14) S-x-D-x(1,2)-A-x(2,3)-K-[ILV] N 14: 18.3285 19( 14) D-x(2)-[DGP]-x-D-D-x(1,3)-D O 15: 17.1044 21( 14) D-x(0,1)-D-x(3,4)-D-x(2)-[ADEGQST]-E P 16: 16.1802 28( 14) D-D-x(1,2)-D-L Q 17: 16.1802 26( 14) D-x(2,3)-D-L-F R 18: 15.6802 22( 14) D-x(0,1)-D-x(3,4)-D-x(3)-E S 19: 15.6802 15( 14) F-x(1,2)-D-x(4,5)-D-x(2)-A T 20: 15.6802 19( 14) D-x(2)-G-x(3,4)-E-x(0,1)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 51.6828 14( 14) K-P-W-D-D-[ET]-x(2)-[LM]-x(2)-[LM]-x(3)-[LV]-x-[AST]-[IV]-x(2)-[DE]-G-L Occurences: 14(14) EF1B_ARTSA : 128- 151: vildi KPWDDEtdMaeMeklVrSVqmDGL vwgaa EF1B_BOMMO : 143- 166: illdv KPWDDEtdMkeMenqVrTIemEGL lwgas EF1B_HUMAN : 146- 169: illdv KPWDDEtdMakLeecVrSIqaDGL vwgss EF1B_ORYSA : 142- 165: vlldv KPWDDEtdMkkLeeaVrSVqmEGL twgas EF1B_PIG : 146- 169: xxxxv KPWDDExxMakLeexVxSIqaDGL vxxxx EF1B_RABIT : 146- 169: illdv KPWDDEtdMvkLeecVrSIqaDGL vwgss EF1B_TRYCR : 144- 167: ilfdv KPWDDTvdLqaLankLhAVkrDGL lwgdh EF1B_WHEAT : 136- 159: vlmdi KPWDDEtdMkkLeeaVrSVqmEGL twgas EF1B_XENLA : 149- 172: illdv KPWDDEtdMgkLeecLrSIqmDGL lwgss EF1B_YEAST : 127- 150: vtldv KPWDDEtnLeeMvanVkAIemEGL twgah EF1D_ARTSA : 159- 182: illdi KPWDDEtdMgaMereVrSIamDGL iwgas EF1D_HUMAN : 203- 226: illdv KPWDDEtdMaqLeacVrSIqlDGL vwgas EF1D_XENLA : 187- 210: illdv KPWDDEtdMakLeecVrTVqmDGL vwgss EF1X_CAEEL : 134- 157: vildv KPWDDEtdLgeMeklVrSIemDGL vwgga B 2: 47.5128 14( 14) P-W-D-D-[ET]-x(2)-[LM]-x(2)-[LM]-x(3)-[LV]-x-[AST]-[IV]-x(2)-[DE]-G-L Occurences: 14(14) EF1B_ARTSA : 129- 151: ildik PWDDEtdMaeMeklVrSVqmDGL vwgaa EF1B_BOMMO : 144- 166: lldvk PWDDEtdMkeMenqVrTIemEGL lwgas EF1B_HUMAN : 147- 169: lldvk PWDDEtdMakLeecVrSIqaDGL vwgss EF1B_ORYSA : 143- 165: lldvk PWDDEtdMkkLeeaVrSVqmEGL twgas EF1B_PIG : 147- 169: xxxvk PWDDExxMakLeexVxSIqaDGL vxxxx EF1B_RABIT : 147- 169: lldvk PWDDEtdMvkLeecVrSIqaDGL vwgss EF1B_TRYCR : 145- 167: lfdvk PWDDTvdLqaLankLhAVkrDGL lwgdh EF1B_WHEAT : 137- 159: lmdik PWDDEtdMkkLeeaVrSVqmEGL twgas EF1B_XENLA : 150- 172: lldvk PWDDEtdMgkLeecLrSIqmDGL lwgss EF1B_YEAST : 128- 150: tldvk PWDDEtnLeeMvanVkAIemEGL twgah EF1D_ARTSA : 160- 182: lldik PWDDEtdMgaMereVrSIamDGL iwgas EF1D_HUMAN : 204- 226: lldvk PWDDEtdMaqLeacVrSIqlDGL vwgas EF1D_XENLA : 188- 210: lldvk PWDDEtdMakLeecVrTVqmDGL vwgss EF1X_CAEEL : 135- 157: ildvk PWDDEtdLgeMeklVrSIemDGL vwgga C 3: 40.9335 15( 14) E-x(1,2)-V-Q-S-x-D-[IV]-[AV]-A-x-[NQ]-K-[ILV] Occurences: 15(14) EF1B_ARTSA : 192- 206: kisef EdfVQSvDIAAfNKV EF1B_BOMMO : 207- 221: kiqef EdfVQSvDIAAfNKI EF1B_HUMAN : 210- 224: qitaf EdyVQSmDVAAfNKI EF1B_ORYSA : 209- 222: eepin Ef-VQScDIVAfNKI EF1B_PIG : 210- 224: qitaf EdyVQSmDVAAfNKI EF1B_RABIT : 210- 224: qitaf EdyVQSmDVAAfNKI EF1B_TRYCR : 208- 222: limsf EdeVQSmDIVAwNKI EF1B_WHEAT : 202- 215: eapin Ey-VQScDIVAfNKI EF1B_XENLA : 213- 227: kitaf EdfVQSmDVAAfNKI EF1B_YEAST : 191- 205: sieed EdhVQStDIAAmQKL EF1D_ARTSA : 223- 237: kieaf EdyVQSvDIAAfNKI EF1D_HUMAN : 267- 281: eitkf EehVQSvDIAAfNKI EF1D_HUMAN : 268- 281: itkfe Eh-VQSvDIAAfNKI EF1D_XENLA : 251- 265: eitkf EdyVQSvDIAAfNKI EF1X_CAEEL : 199- 213: itgdf EdhVQSvDIVAfNKI D 4: 34.0228 15( 14) E-x(1,2)-V-Q-S-x-D-x(1,2)-A-x-[NQ]-K-[ILV] Occurences: 15(14) EF1B_ARTSA : 192- 206: kisef EdfVQSvDiaAfNKV EF1B_BOMMO : 207- 221: kiqef EdfVQSvDiaAfNKI EF1B_HUMAN : 210- 224: qitaf EdyVQSmDvaAfNKI EF1B_ORYSA : 209- 222: eepin Ef-VQScDivAfNKI EF1B_PIG : 210- 224: qitaf EdyVQSmDvaAfNKI EF1B_RABIT : 210- 224: qitaf EdyVQSmDvaAfNKI EF1B_TRYCR : 208- 222: limsf EdeVQSmDivAwNKI EF1B_WHEAT : 202- 215: eapin Ey-VQScDivAfNKI EF1B_XENLA : 213- 227: kitaf EdfVQSmDvaAfNKI EF1B_YEAST : 191- 205: sieed EdhVQStDiaAmQKL EF1D_ARTSA : 223- 237: kieaf EdyVQSvDiaAfNKI EF1D_HUMAN : 267- 281: eitkf EehVQSvDiaAfNKI EF1D_HUMAN : 268- 281: itkfe Eh-VQSvDiaAfNKI EF1D_XENLA : 251- 265: eitkf EdyVQSvDiaAfNKI EF1X_CAEEL : 199- 213: itgdf EdhVQSvDivAfNKI E 5: 28.9962 28( 14) S-x(3,4)-D-x-K-[DP]-x-D-D-x-[DTV]-x-[FLM] Occurences: 28(14) EF1B_ARTSA : 121- 136: aivak SsvilDiKPwDDeTdM aemek EF1B_ARTSA : 122- 136: ivaks Svil-DiKPwDDeTdM aemek EF1B_BOMMO : 136- 151: aliak SsillDvKPwDDeTdM kemen EF1B_BOMMO : 137- 151: liaks Sill-DvKPwDDeTdM kemen EF1B_HUMAN : 89- 103: edttg Sgat-DsKDdDDiDlF gsdde EF1B_HUMAN : 139- 154: alvak SsillDvKPwDDeTdM aklee EF1B_HUMAN : 140- 154: lvaks Sill-DvKPwDDeTdM aklee EF1B_ORYSA : 135- 150: kesgk SsvllDvKPwDDeTdM kklee EF1B_ORYSA : 136- 150: esgks Svll-DvKPwDDeTdM kklee EF1B_PIG : 89- 103: edtte Sgat-DsKDdDDiDlF xxxxx EF1B_RABIT : 89- 103: edttg Sgat-DsKDdDDiDlF gsdde EF1B_RABIT : 139- 154: alvak SsillDvKPwDDeTdM vklee EF1B_RABIT : 140- 154: lvaks Sill-DvKPwDDeTdM vklee EF1B_TRYCR : 137- 152: eviak SsilfDvKPwDDtVdL qalan EF1B_TRYCR : 138- 152: viaks Silf-DvKPwDDtVdL qalan EF1B_WHEAT : 129- 144: kesgk SsvlmDiKPwDDeTdM kklee EF1B_WHEAT : 130- 144: esgks Svlm-DiKPwDDeTdM kklee EF1B_XENLA : 142- 157: tliak SsillDvKPwDDeTdM gklee EF1B_XENLA : 143- 157: liaks Sill-DvKPwDDeTdM gklee EF1B_YEAST : 120- 135: kpaak SivtlDvKPwDDeTnL eemva EF1D_ARTSA : 152- 167: tviak SsillDiKPwDDeTdM gamer EF1D_ARTSA : 153- 167: viaks Sill-DiKPwDDeTdM gamer EF1D_HUMAN : 196- 211: alvak SsillDvKPwDDeTdM aqlea EF1D_HUMAN : 197- 211: lvaks Sill-DvKPwDDeTdM aqlea EF1D_XENLA : 180- 195: gviak SsillDvKPwDDeTdM aklee EF1D_XENLA : 181- 195: viaks Sill-DvKPwDDeTdM aklee EF1X_CAEEL : 127- 142: gpiak SsvilDvKPwDDeTdL gemek EF1X_CAEEL : 128- 142: piaks Svil-DvKPwDDeTdL gemek F 6: 26.6821 14( 14) V-Q-S-x-D-x(1,2)-A-x(2,3)-K-[ILV] Occurences: 14(14) EF1B_ARTSA : 195- 206: efedf VQSvDiaAfn-KV EF1B_ARTSA : 195- 206: efedf VQSvDi-AafnKV EF1B_BOMMO : 210- 221: efedf VQSvDiaAfn-KI EF1B_BOMMO : 210- 221: efedf VQSvDi-AafnKI EF1B_HUMAN : 213- 224: afedy VQSmDvaAfn-KI EF1B_HUMAN : 213- 224: afedy VQSmDv-AafnKI EF1B_ORYSA : 211- 222: pinef VQScDivAfn-KI EF1B_PIG : 213- 224: afedy VQSmDvaAfn-KI EF1B_PIG : 213- 224: afedy VQSmDv-AafnKI EF1B_RABIT : 213- 224: afedy VQSmDvaAfn-KI EF1B_RABIT : 213- 224: afedy VQSmDv-AafnKI EF1B_TRYCR : 211- 222: sfede VQSmDivAwn-KI EF1B_WHEAT : 204- 215: piney VQScDivAfn-KI EF1B_XENLA : 216- 227: afedf VQSmDvaAfn-KI EF1B_XENLA : 216- 227: afedf VQSmDv-AafnKI EF1B_YEAST : 194- 205: ededh VQStDiaAmq-KL EF1B_YEAST : 194- 205: ededh VQStDi-AamqKL EF1D_ARTSA : 226- 237: afedy VQSvDiaAfn-KI EF1D_ARTSA : 226- 237: afedy VQSvDi-AafnKI EF1D_HUMAN : 270- 281: kfeeh VQSvDiaAfn-KI EF1D_HUMAN : 270- 281: kfeeh VQSvDi-AafnKI EF1D_XENLA : 254- 265: kfedy VQSvDiaAfn-KI EF1D_XENLA : 254- 265: kfedy VQSvDi-AafnKI EF1X_CAEEL : 202- 213: dfedh VQSvDivAfn-KI G 7: 25.3261 16( 14) D-x-K-[DP]-x-D-D-x-[DTV]-x-[FLM] Occurences: 16(14) EF1B_ARTSA : 126- 136: ssvil DiKPwDDeTdM aemek EF1B_BOMMO : 141- 151: ssill DvKPwDDeTdM kemen EF1B_HUMAN : 93- 103: gsgat DsKDdDDiDlF gsdde EF1B_HUMAN : 144- 154: ssill DvKPwDDeTdM aklee EF1B_ORYSA : 140- 150: ssvll DvKPwDDeTdM kklee EF1B_PIG : 93- 103: esgat DsKDdDDiDlF xxxxx EF1B_RABIT : 93- 103: gsgat DsKDdDDiDlF gsdde EF1B_RABIT : 144- 154: ssill DvKPwDDeTdM vklee EF1B_TRYCR : 142- 152: ssilf DvKPwDDtVdL qalan EF1B_WHEAT : 134- 144: ssvlm DiKPwDDeTdM kklee EF1B_XENLA : 147- 157: ssill DvKPwDDeTdM gklee EF1B_YEAST : 125- 135: sivtl DvKPwDDeTnL eemva EF1D_ARTSA : 157- 167: ssill DiKPwDDeTdM gamer EF1D_HUMAN : 201- 211: ssill DvKPwDDeTdM aqlea EF1D_XENLA : 185- 195: ssill DvKPwDDeTdM aklee EF1X_CAEEL : 132- 142: ssvil DvKPwDDeTdL gemek H 8: 24.8261 16( 14) D-x(0,1)-K-[DP]-x-D-D-x-[DTV]-x-[FLM] Occurences: 16(14) EF1B_ARTSA : 126- 136: ssvil DiKPwDDeTdM aemek EF1B_BOMMO : 141- 151: ssill DvKPwDDeTdM kemen EF1B_HUMAN : 93- 103: gsgat DsKDdDDiDlF gsdde EF1B_HUMAN : 144- 154: ssill DvKPwDDeTdM aklee EF1B_ORYSA : 140- 150: ssvll DvKPwDDeTdM kklee EF1B_PIG : 93- 103: esgat DsKDdDDiDlF xxxxx EF1B_RABIT : 93- 103: gsgat DsKDdDDiDlF gsdde EF1B_RABIT : 144- 154: ssill DvKPwDDeTdM vklee EF1B_TRYCR : 142- 152: ssilf DvKPwDDtVdL qalan EF1B_WHEAT : 134- 144: ssvlm DiKPwDDeTdM kklee EF1B_XENLA : 147- 157: ssill DvKPwDDeTdM gklee EF1B_YEAST : 125- 135: sivtl DvKPwDDeTnL eemva EF1D_ARTSA : 157- 167: ssill DiKPwDDeTdM gamer EF1D_HUMAN : 201- 211: ssill DvKPwDDeTdM aqlea EF1D_XENLA : 185- 195: ssill DvKPwDDeTdM aklee EF1X_CAEEL : 132- 142: ssvil DvKPwDDeTdL gemek I 9: 22.5121 14( 14) Q-S-x-D-x(1,2)-A-x(2,3)-K-[ILV] Occurences: 14(14) EF1B_ARTSA : 196- 206: fedfv QSvDiaAfn-KV EF1B_ARTSA : 196- 206: fedfv QSvDi-AafnKV EF1B_BOMMO : 211- 221: fedfv QSvDiaAfn-KI EF1B_BOMMO : 211- 221: fedfv QSvDi-AafnKI EF1B_HUMAN : 214- 224: fedyv QSmDvaAfn-KI EF1B_HUMAN : 214- 224: fedyv QSmDv-AafnKI EF1B_ORYSA : 212- 222: inefv QScDivAfn-KI EF1B_PIG : 214- 224: fedyv QSmDvaAfn-KI EF1B_PIG : 214- 224: fedyv QSmDv-AafnKI EF1B_RABIT : 214- 224: fedyv QSmDvaAfn-KI EF1B_RABIT : 214- 224: fedyv QSmDv-AafnKI EF1B_TRYCR : 212- 222: fedev QSmDivAwn-KI EF1B_WHEAT : 205- 215: ineyv QScDivAfn-KI EF1B_XENLA : 217- 227: fedfv QSmDvaAfn-KI EF1B_XENLA : 217- 227: fedfv QSmDv-AafnKI EF1B_YEAST : 195- 205: dedhv QStDiaAmq-KL EF1B_YEAST : 195- 205: dedhv QStDi-AamqKL EF1D_ARTSA : 227- 237: fedyv QSvDiaAfn-KI EF1D_ARTSA : 227- 237: fedyv QSvDi-AafnKI EF1D_HUMAN : 271- 281: feehv QSvDiaAfn-KI EF1D_HUMAN : 271- 281: feehv QSvDi-AafnKI EF1D_XENLA : 255- 265: fedyv QSvDiaAfn-KI EF1D_XENLA : 255- 265: fedyv QSvDi-AafnKI EF1X_CAEEL : 203- 213: fedhv QSvDivAfn-KI J 10: 22.5008 26( 14) D-[DEG]-D-x(1,3)-D-L-F Occurences: 26(14) EF1B_ARTSA : 81- 87: askee DDDv--DLF gsdee EF1B_BOMMO : 92- 100: paakd DDDddvDLF gsgde EF1B_BOMMO : 93- 100: aakdd DDDdv-DLF gsgde EF1B_BOMMO : 94- 100: akddd DDDv--DLF gsgde EF1B_HUMAN : 96- 103: atdsk DDDdi-DLF gsdde EF1B_HUMAN : 97- 103: tdskd DDDi--DLF gsdde EF1B_ORYSA : 99- 106: kdade DDDdl-DLF gdete EF1B_ORYSA : 100- 106: daded DDDl--DLF gdete EF1B_PIG : 96- 103: atdsk DDDdi-DLF xxxxx EF1B_PIG : 97- 103: tdskd DDDi--DLF xxxxx EF1B_RABIT : 96- 103: atdsk DDDdi-DLF gsdde EF1B_RABIT : 97- 103: tdskd DDDi--DLF gsdde EF1B_TRYCR : 97- 105: pakqa DEDeeiDLF geate EF1B_WHEAT : 93- 101: askde DDDddmDLF gdete EF1B_WHEAT : 94- 101: skded DDDdm-DLF gdete EF1B_WHEAT : 95- 101: kdedd DDDm--DLF gdete EF1B_XENLA : 99- 106: etkee DDDdi-DLF gsdde EF1B_XENLA : 100- 106: tkeed DDDi--DLF gsdde EF1B_YEAST : 77- 83: aeeee DDDv--DLF gsdde EF1D_ARTSA : 112- 118: qkeee DDDv--DLF gsdee EF1D_HUMAN : 152- 160: tpaed DEDddiDLF gsdne EF1D_HUMAN : 154- 160: aedde DDDi--DLF gsdne EF1D_XENLA : 136- 144: tgedd DDDddiDLF gsdne EF1D_XENLA : 137- 144: geddd DDDdi-DLF gsdne EF1D_XENLA : 138- 144: edddd DDDi--DLF gsdne EF1X_CAEEL : 84- 91: aaaaa DGDdf-DLF gsdde K 11: 20.5306 18( 14) D-x-[FV]-G-x(3,4)-E-x(0,1)-E-[ADEQST] Occurences: 18(14) EF1B_ARTSA : 85- 95: edddv DlFGsde-EdEE aekik EF1B_BOMMO : 98- 107: ddddv DlFGsgd-E-EE daeae EF1B_BOMMO : 98- 108: ddddv DlFGsgdeE-ED aeaer EF1B_BOMMO : 98- 108: ddddv DlFGsgd-EeED aeaer EF1B_HUMAN : 101- 110: ddddi DlFGsdd-E-EE seeak EF1B_HUMAN : 101- 111: ddddi DlFGsddeE-ES eeakr EF1B_HUMAN : 101- 111: ddddi DlFGsdd-EeES eeakr EF1B_HUMAN : 195- 205: cvved DkVGtdmlE-EQ itafe EF1B_ORYSA : 104- 113: ddddl DlFGdet-E-ED kkaad EF1B_PIG : 195- 205: xxxxd DkVGtdmlE-EQ itafe EF1B_RABIT : 101- 110: ddddi DlFGsdd-E-EE seeak EF1B_RABIT : 101- 111: ddddi DlFGsddeE-ES eeakr EF1B_RABIT : 101- 111: ddddi DlFGsdd-EeES eeakr EF1B_RABIT : 195- 205: cvved DkVGtdmlE-EQ itafe EF1B_TRYCR : 103- 112: edeei DlFGeat-E-EE taale EF1B_TRYCR : 103- 113: edeei DlFGeateE-ET aalea EF1B_TRYCR : 103- 113: edeei DlFGeat-EeET aalea EF1B_WHEAT : 99- 108: ddddm DlFGdet-E-ED kkaaa EF1B_XENLA : 104- 113: ddddi DlFGsdd-E-EE sedak EF1B_XENLA : 104- 114: ddddi DlFGsddeE-ES edakr EF1B_XENLA : 104- 114: ddddi DlFGsdd-EeES edakr EF1B_YEAST : 81- 90: edddv DlFGsdd-E-EA daeae EF1D_ARTSA : 116- 126: edddv DlFGsde-EsEE aekvk EF1D_HUMAN : 158- 167: edddi DlFGsdn-E-EE dkeaa EF1D_HUMAN : 158- 168: edddi DlFGsdneE-ED keaaq EF1D_HUMAN : 158- 168: edddi DlFGsdn-EeED keaaq EF1D_HUMAN : 252- 262: cvved DkVGtdllE-EE itkfe EF1D_XENLA : 142- 151: ddddi DlFGsdn-E-EE daeaa EF1D_XENLA : 142- 152: ddddi DlFGsdneE-ED aeaar EF1D_XENLA : 142- 152: ddddi DlFGsdn-EeED aeaar EF1D_XENLA : 236- 246: cvved DkVGtdilE-EE itkfe EF1X_CAEEL : 89- 98: dgddf DlFGsdd-E-EE daeka EF1X_CAEEL : 89- 99: dgddf DlFGsddeE-ED aekak EF1X_CAEEL : 89- 99: dgddf DlFGsdd-EeED aekak L 12: 19.2471 18( 14) D-x-K-x(3)-D-x(0,2)-D-[LM] Occurences: 18(14) EF1B_ARTSA : 126- 136: ssvil DiKpwdDetDM aemek EF1B_BOMMO : 141- 151: ssill DvKpwdDetDM kemen EF1B_HUMAN : 93- 102: gsgat DsKdddDi-DL fgsdd EF1B_HUMAN : 144- 154: ssill DvKpwdDetDM aklee EF1B_ORYSA : 140- 150: ssvll DvKpwdDetDM kklee EF1B_PIG : 93- 102: esgat DsKdddDi-DL fxxxx EF1B_RABIT : 93- 102: gsgat DsKdddDi-DL fgsdd EF1B_RABIT : 144- 154: ssill DvKpwdDetDM vklee EF1B_TRYCR : 142- 152: ssilf DvKpwdDtvDL qalan EF1B_TRYCR : 192- 200: livie DdKvlsD--DL eelim EF1B_WHEAT : 134- 144: ssvlm DiKpwdDetDM kklee EF1B_XENLA : 147- 157: ssill DvKpwdDetDM gklee EF1B_YEAST : 175- 183: ncvve DdKvslD--DL qqsie EF1D_ARTSA : 157- 167: ssill DiKpwdDetDM gamer EF1D_HUMAN : 201- 211: ssill DvKpwdDetDM aqlea EF1D_XENLA : 185- 195: ssill DvKpwdDetDM aklee EF1X_CAEEL : 132- 142: ssvil DvKpwdDetDL gemek EF1X_CAEEL : 182- 190: itvie DlKvsvD--DL iekit M 13: 18.3420 14( 14) S-x-D-x(1,2)-A-x(2,3)-K-[ILV] Occurences: 14(14) EF1B_ARTSA : 197- 206: edfvq SvDiaAfn-KV EF1B_ARTSA : 197- 206: edfvq SvDi-AafnKV EF1B_BOMMO : 212- 221: edfvq SvDiaAfn-KI EF1B_BOMMO : 212- 221: edfvq SvDi-AafnKI EF1B_HUMAN : 215- 224: edyvq SmDvaAfn-KI EF1B_HUMAN : 215- 224: edyvq SmDv-AafnKI EF1B_ORYSA : 213- 222: nefvq ScDivAfn-KI EF1B_PIG : 215- 224: edyvq SmDvaAfn-KI EF1B_PIG : 215- 224: edyvq SmDv-AafnKI EF1B_RABIT : 215- 224: edyvq SmDvaAfn-KI EF1B_RABIT : 215- 224: edyvq SmDv-AafnKI EF1B_TRYCR : 213- 222: edevq SmDivAwn-KI EF1B_WHEAT : 206- 215: neyvq ScDivAfn-KI EF1B_XENLA : 218- 227: edfvq SmDvaAfn-KI EF1B_XENLA : 218- 227: edfvq SmDv-AafnKI EF1B_YEAST : 196- 205: edhvq StDiaAmq-KL EF1B_YEAST : 196- 205: edhvq StDi-AamqKL EF1D_ARTSA : 228- 237: edyvq SvDiaAfn-KI EF1D_ARTSA : 228- 237: edyvq SvDi-AafnKI EF1D_HUMAN : 272- 281: eehvq SvDiaAfn-KI EF1D_HUMAN : 272- 281: eehvq SvDi-AafnKI EF1D_XENLA : 256- 265: edyvq SvDiaAfn-KI EF1D_XENLA : 256- 265: edyvq SvDi-AafnKI EF1X_CAEEL : 204- 213: edhvq SvDivAfn-KI N 14: 18.3285 19( 14) D-x(2)-[DGP]-x-D-D-x(1,3)-D Occurences: 19(14) EF1B_ARTSA : 126- 135: ssvil DikPwDDet-D maeme EF1B_BOMMO : 141- 150: ssill DvkPwDDet-D mkeme EF1B_HUMAN : 93- 101: gsgat DskDdDDi--D lfgsd EF1B_HUMAN : 144- 153: ssill DvkPwDDet-D makle EF1B_ORYSA : 140- 149: ssvll DvkPwDDet-D mkkle EF1B_PIG : 93- 101: esgat DskDdDDi--D lfxxx EF1B_RABIT : 93- 101: gsgat DskDdDDi--D lfgsd EF1B_RABIT : 144- 153: ssill DvkPwDDet-D mvkle EF1B_TRYCR : 142- 151: ssilf DvkPwDDtv-D lqala EF1B_WHEAT : 91- 99: paask DedDdDDm--D lfgde EF1B_WHEAT : 134- 143: ssvlm DikPwDDet-D mkkle EF1B_XENLA : 147- 156: ssill DvkPwDDet-D mgkle EF1B_YEAST : 81- 91: edddv DlfGsDDeeaD aeaek EF1D_ARTSA : 157- 166: ssill DikPwDDet-D mgame EF1D_HUMAN : 201- 210: ssill DvkPwDDet-D maqle EF1D_XENLA : 134- 142: ngtge DddDdDDi--D lfgsd EF1D_XENLA : 185- 194: ssill DvkPwDDet-D makle EF1X_CAEEL : 89- 99: dgddf DlfGsDDeeeD aekak EF1X_CAEEL : 132- 141: ssvil DvkPwDDet-D lgeme O 15: 17.1044 21( 14) D-x(0,1)-D-x(3,4)-D-x(2)-[ADEGQST]-E Occurences: 21(14) EF1B_ARTSA : 83- 94: keedd DvDlfgsDeeDE eaeki EF1B_ARTSA : 176- 186: mcvve D-DkvsiDelQE kisef EF1B_BOMMO : 191- 201: mcvie D-DkvsvDllTE kiqef EF1B_HUMAN : 99- 110: skddd DiDlfgsDdeEE seeak EF1B_HUMAN : 194- 204: qcvve D-DkvgtDmlEE qitaf EF1B_ORYSA : 102- 112: deddd DlDlfg-DetEE dkkaa EF1B_PIG : 194- 204: xxxxx D-DkvgtDmlEE qitaf EF1B_RABIT : 99- 110: skddd DiDlfgsDdeEE seeak EF1B_RABIT : 194- 204: qcvve D-DkvgtDmlEE qitaf EF1B_TRYCR : 97- 107: pakqa DeDeei-DlfGE ateee EF1B_TRYCR : 192- 202: livie D-DkvlsDdlEE limsf EF1B_WHEAT : 97- 107: edddd DmDlfg-DetEE dkkaa EF1B_XENLA : 102- 113: eeddd DiDlfgsDdeEE sedak EF1B_XENLA : 197- 207: qcvve D-DkvgtDvlEE kitaf EF1B_YEAST : 86- 95: dlfgs D-Deea-DaeAE kwkae EF1D_ARTSA : 114- 125: eeedd DvDlfgsDeeSE eaekv EF1D_HUMAN : 156- 167: ddedd DiDlfgsDneEE dkeaa EF1D_HUMAN : 251- 261: qcvve D-DkvgtDllEE eitkf EF1D_XENLA : 140- 151: ddddd DiDlfgsDneEE daeaa EF1D_XENLA : 235- 245: qcvve D-DkvgtDilEE eitkf EF1X_CAEEL : 87- 98: aadgd DfDlfgsDdeEE daeka P 16: 16.1802 28( 14) D-D-x(1,2)-D-L Occurences: 28(14) EF1B_ARTSA : 81- 86: askee DDdvDL fgsde EF1B_ARTSA : 82- 86: skeed DDv-DL fgsde EF1B_BOMMO : 94- 99: akddd DDdvDL fgsgd EF1B_BOMMO : 95- 99: kdddd DDv-DL fgsgd EF1B_HUMAN : 97- 102: tdskd DDdiDL fgsdd EF1B_HUMAN : 98- 102: dskdd DDi-DL fgsdd EF1B_ORYSA : 99- 103: kdade DDd-DL dlfgd EF1B_ORYSA : 100- 105: daded DDdlDL fgdet EF1B_ORYSA : 101- 105: adedd DDl-DL fgdet EF1B_PIG : 97- 102: tdskd DDdiDL fxxxx EF1B_PIG : 98- 102: dskdd DDi-DL fxxxx EF1B_RABIT : 97- 102: tdskd DDdiDL fgsdd EF1B_RABIT : 98- 102: dskdd DDi-DL fgsdd EF1B_TRYCR : 147- 152: dvkpw DDtvDL qalan EF1B_WHEAT : 95- 100: kdedd DDdmDL fgdet EF1B_WHEAT : 96- 100: deddd DDm-DL fgdet EF1B_XENLA : 100- 105: tkeed DDdiDL fgsdd EF1B_XENLA : 101- 105: keedd DDi-DL fgsdd EF1B_YEAST : 77- 82: aeeee DDdvDL fgsdd EF1B_YEAST : 78- 82: eeeed DDv-DL fgsdd EF1D_ARTSA : 112- 117: qkeee DDdvDL fgsde EF1D_ARTSA : 113- 117: keeed DDv-DL fgsde EF1D_HUMAN : 154- 159: aedde DDdiDL fgsdn EF1D_HUMAN : 155- 159: edded DDi-DL fgsdn EF1D_XENLA : 138- 143: edddd DDdiDL fgsdn EF1D_XENLA : 139- 143: ddddd DDi-DL fgsdn EF1X_CAEEL : 86- 90: aaadg DDf-DL fgsdd EF1X_CAEEL : 137- 142: dvkpw DDetDL gemek Q 17: 16.1802 26( 14) D-x(2,3)-D-L-F Occurences: 26(14) EF1B_ARTSA : 81- 87: askee DddvDLF gsdee EF1B_ARTSA : 82- 87: skeed Ddv-DLF gsdee EF1B_BOMMO : 94- 100: akddd DddvDLF gsgde EF1B_BOMMO : 95- 100: kdddd Ddv-DLF gsgde EF1B_HUMAN : 97- 103: tdskd DddiDLF gsdde EF1B_HUMAN : 98- 103: dskdd Ddi-DLF gsdde EF1B_ORYSA : 100- 106: daded DddlDLF gdete EF1B_ORYSA : 101- 106: adedd Ddl-DLF gdete EF1B_PIG : 97- 103: tdskd DddiDLF xxxxx EF1B_PIG : 98- 103: dskdd Ddi-DLF xxxxx EF1B_RABIT : 97- 103: tdskd DddiDLF gsdde EF1B_RABIT : 98- 103: dskdd Ddi-DLF gsdde EF1B_TRYCR : 99- 105: kqade DeeiDLF geate EF1B_WHEAT : 95- 101: kdedd DddmDLF gdete EF1B_WHEAT : 96- 101: deddd Ddm-DLF gdete EF1B_XENLA : 100- 106: tkeed DddiDLF gsdde EF1B_XENLA : 101- 106: keedd Ddi-DLF gsdde EF1B_YEAST : 77- 83: aeeee DddvDLF gsdde EF1B_YEAST : 78- 83: eeeed Ddv-DLF gsdde EF1D_ARTSA : 112- 118: qkeee DddvDLF gsdee EF1D_ARTSA : 113- 118: keeed Ddv-DLF gsdee EF1D_HUMAN : 154- 160: aedde DddiDLF gsdne EF1D_HUMAN : 155- 160: edded Ddi-DLF gsdne EF1D_XENLA : 138- 144: edddd DddiDLF gsdne EF1D_XENLA : 139- 144: ddddd Ddi-DLF gsdne EF1X_CAEEL : 86- 91: aaadg Ddf-DLF gsdde R 18: 15.6802 22( 14) D-x(0,1)-D-x(3,4)-D-x(3)-E Occurences: 22(14) EF1B_ARTSA : 83- 94: keedd DvDlfgsDeedE eaeki EF1B_ARTSA : 176- 186: mcvve D-DkvsiDelqE kisef EF1B_BOMMO : 191- 201: mcvie D-DkvsvDlltE kiqef EF1B_HUMAN : 99- 110: skddd DiDlfgsDdeeE seeak EF1B_HUMAN : 194- 204: qcvve D-DkvgtDmleE qitaf EF1B_ORYSA : 102- 112: deddd DlDlfg-DeteE dkkaa EF1B_PIG : 194- 204: xxxxx D-DkvgtDmleE qitaf EF1B_RABIT : 99- 110: skddd DiDlfgsDdeeE seeak EF1B_RABIT : 194- 204: qcvve D-DkvgtDmleE qitaf EF1B_TRYCR : 97- 107: pakqa DeDeei-DlfgE ateee EF1B_TRYCR : 192- 202: livie D-DkvlsDdleE limsf EF1B_WHEAT : 97- 107: edddd DmDlfg-DeteE dkkaa EF1B_XENLA : 102- 113: eeddd DiDlfgsDdeeE sedak EF1B_XENLA : 197- 207: qcvve D-DkvgtDvleE kitaf EF1B_YEAST : 86- 95: dlfgs D-Deea-DaeaE kwkae EF1D_ARTSA : 114- 125: eeedd DvDlfgsDeesE eaekv EF1D_ARTSA : 207- 217: scvve D-DkvsvDelvE kieaf EF1D_HUMAN : 156- 167: ddedd DiDlfgsDneeE dkeaa EF1D_HUMAN : 251- 261: qcvve D-DkvgtDlleE eitkf EF1D_XENLA : 140- 151: ddddd DiDlfgsDneeE daeaa EF1D_XENLA : 235- 245: qcvve D-DkvgtDileE eitkf EF1X_CAEEL : 87- 98: aadgd DfDlfgsDdeeE daeka S 19: 15.6802 15( 14) F-x(1,2)-D-x(4,5)-D-x(2)-A Occurences: 15(14) EF1B_ARTSA : 191- 202: ekise Fe-DfvqsvDiaA fnkv EF1B_BOMMO : 206- 217: ekiqe Fe-DfvqsvDiaA fnki EF1B_HUMAN : 209- 220: eqita Fe-DyvqsmDvaA fnki EF1B_ORYSA : 106- 116: ddldl Fg-Detee-DkkA adera EF1B_PIG : 209- 220: eqita Fe-DyvqsmDvaA fnki EF1B_RABIT : 209- 220: eqita Fe-DyvqsmDvaA fnki EF1B_TRYCR : 207- 218: elims Fe-DevqsmDivA wnki EF1B_WHEAT : 101- 111: ddmdl Fg-Detee-DkkA aaere EF1B_XENLA : 212- 223: ekita Fe-DfvqsmDvaA fnki EF1B_YEAST : 83- 94: ddvdl FgsDdeea-DaeA ekwka EF1D_ARTSA : 222- 233: ekiea Fe-DyvqsvDiaA fnki EF1D_HUMAN : 160- 171: ddidl FgsDneee-DkeA aqlre EF1D_XENLA : 144- 155: ddidl FgsDneee-DaeA arire EF1D_XENLA : 250- 261: eeitk Fe-DyvqsvDiaA fnki EF1X_CAEEL : 198- 209: kitgd Fe-DhvqsvDivA fnki T 20: 15.6802 19( 14) D-x(2)-G-x(3,4)-E-x(0,1)-E Occurences: 19(14) EF1B_ARTSA : 85- 94: edddv DlfGsde-EdE eaeki EF1B_BOMMO : 98- 106: ddddv DlfGsgd-E-E edaea EF1B_BOMMO : 98- 107: ddddv DlfGsgdeE-E daeae EF1B_BOMMO : 98- 107: ddddv DlfGsgd-EeE daeae EF1B_HUMAN : 101- 109: ddddi DlfGsdd-E-E eseea EF1B_HUMAN : 101- 110: ddddi DlfGsddeE-E seeak EF1B_HUMAN : 101- 110: ddddi DlfGsdd-EeE seeak EF1B_HUMAN : 195- 204: cvved DkvGtdmlE-E qitaf EF1B_ORYSA : 104- 112: ddddl DlfGdet-E-E dkkaa EF1B_PIG : 195- 204: xxxxd DkvGtdmlE-E qitaf EF1B_RABIT : 101- 109: ddddi DlfGsdd-E-E eseea EF1B_RABIT : 101- 110: ddddi DlfGsddeE-E seeak EF1B_RABIT : 101- 110: ddddi DlfGsdd-EeE seeak EF1B_RABIT : 195- 204: cvved DkvGtdmlE-E qitaf EF1B_TRYCR : 103- 111: edeei DlfGeat-E-E etaal EF1B_TRYCR : 103- 112: edeei DlfGeateE-E taale EF1B_TRYCR : 103- 112: edeei DlfGeat-EeE taale EF1B_WHEAT : 99- 107: ddddm DlfGdet-E-E dkkaa EF1B_XENLA : 104- 112: ddddi DlfGsdd-E-E eseda EF1B_XENLA : 104- 113: ddddi DlfGsddeE-E sedak EF1B_XENLA : 104- 113: ddddi DlfGsdd-EeE sedak EF1B_XENLA : 198- 207: cvved DkvGtdvlE-E kitaf EF1B_YEAST : 81- 89: edddv DlfGsdd-E-E adaea EF1D_ARTSA : 116- 125: edddv DlfGsde-EsE eaekv EF1D_HUMAN : 158- 166: edddi DlfGsdn-E-E edkea EF1D_HUMAN : 158- 167: edddi DlfGsdneE-E dkeaa EF1D_HUMAN : 158- 167: edddi DlfGsdn-EeE dkeaa EF1D_HUMAN : 252- 261: cvved DkvGtdllE-E eitkf EF1D_HUMAN : 252- 262: cvved DkvGtdllEeE itkfe EF1D_XENLA : 142- 150: ddddi DlfGsdn-E-E edaea EF1D_XENLA : 142- 151: ddddi DlfGsdneE-E daeaa EF1D_XENLA : 142- 151: ddddi DlfGsdn-EeE daeaa EF1D_XENLA : 236- 245: cvved DkvGtdilE-E eitkf EF1D_XENLA : 236- 246: cvved DkvGtdilEeE itkfe EF1X_CAEEL : 89- 97: dgddf DlfGsdd-E-E edaek EF1X_CAEEL : 89- 98: dgddf DlfGsddeE-E daeka EF1X_CAEEL : 89- 98: dgddf DlfGsdd-EeE daeka Number of patterns evaluated by Pratt:2906 Total running time: 2 seconds