------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 23 sequences from file D_2_HYDROXYACID_DH_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 23 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename D_2_HYDROXYACID_DH_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DDH_HAEIN 331 DDH_ZYMMO 331 DHD2_LACCA 335 DHGY_CUCSA 382 DHGY_HYPME 321 FDH_EMENI 377 FDH_HANPO 361 FDH_NEUCR 375 FDH_PSESR 400 FDH_SOLTU 379 LDHD_LACDE 332 LDHD_LACHE 336 LDHD_LACPL 332 PDXB_ECOLI 378 SERA_BACSU 419 SERA_ECOLI 409 SERA_HAEIN 410 SERX_YEAST 469 SERY_YEAST 469 VANH_ENTFC 322 YF56_HAEIN 315 YIAE_ECOLI 365 YPRA_CORGL 304 Pratt run started at Thu Feb 6 19:25:13 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 26( 23) G-x(2,3)-G-x-G 2: 11.5102 41( 23) L-x(2)-A-x(2,4)-G 3: 11.5102 32( 23) G-x(2)-V-x(2,4)-A 4: 11.5102 50( 23) G-x(2,3)-V-x(2,3)-A 5: 11.5102 24( 23) G-x(0,1)-G-x(2,3)-G 6: 11.0102 54( 23) L-x(2,3)-A-x(0,2)-G 7: 11.0102 42( 23) A-x(0,1)-L-x(0,2)-G 8: 11.0102 30( 23) T-x(0,1)-E-x(1,3)-A 9: 11.0102 59( 23) L-x(3,5)-D-x(0,1)-V 10: 11.0102 43( 23) L-x(0,2)-G-x(2,3)-G 11: 11.0102 41( 23) D-x(3,4)-A-x(2,4)-G 12: 11.0102 44( 23) D-x(3,5)-A-x(3,4)-G 13: 11.0102 45( 23) L-x(4,5)-D-x(0,2)-V 14: 11.0102 25( 23) G-x(0,1)-G-x(1,3)-G 15: 11.0102 74( 23) A-x(1,3)-G-x(2,3)-V 16: 11.0102 56( 23) L-x(1,2)-A-x(1,3)-G 17: 11.0102 40( 23) G-x(1,2)-V-x(2,4)-A 18: 11.0102 53( 23) G-x(1,3)-V-x(3,4)-A 19: 11.0102 58( 23) G-x(1,3)-V-x(2,3)-A 20: 11.0102 52( 23) A-x(1,3)-K-x(1,2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 12.0102 26( 23) G-x(2,3)-G-x-G B 2: 11.5102 41( 23) L-x(2)-A-x(2,4)-G C 3: 11.5102 32( 23) G-x(2)-V-x(2,4)-A D 4: 11.5102 50( 23) G-x(2,3)-V-x(2,3)-A E 5: 11.5102 24( 23) G-x(0,1)-G-x(2,3)-G F 6: 11.0102 54( 23) L-x(2,3)-A-x(0,2)-G G 7: 11.0102 42( 23) A-x(0,1)-L-x(0,2)-G H 8: 11.0102 30( 23) T-x(0,1)-E-x(1,3)-A I 9: 11.0102 59( 23) L-x(3,5)-D-x(0,1)-V J 10: 11.0102 43( 23) L-x(0,2)-G-x(2,3)-G K 11: 11.0102 41( 23) D-x(3,4)-A-x(2,4)-G L 12: 11.0102 44( 23) D-x(3,5)-A-x(3,4)-G M 13: 11.0102 45( 23) L-x(4,5)-D-x(0,2)-V N 14: 11.0102 25( 23) G-x(0,1)-G-x(1,3)-G O 15: 11.0102 74( 23) A-x(1,3)-G-x(2,3)-V P 16: 11.0102 56( 23) L-x(1,2)-A-x(1,3)-G Q 17: 11.0102 40( 23) G-x(1,2)-V-x(2,4)-A R 18: 11.0102 53( 23) G-x(1,3)-V-x(3,4)-A S 19: 11.0102 58( 23) G-x(1,3)-V-x(2,3)-A T 20: 11.0102 52( 23) A-x(1,3)-K-x(1,2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 12.0102 26( 23) G-x(2,3)-G-x-G Occurences: 26(23) DDH_HAEIN : 148- 153: ygrtv Gvi-GtG kigia DDH_ZYMMO : 148- 153: hdktv Gii-GvG higsv DHD2_LACCA : 149- 154: gqqtv Gvm-GtG higqv DHD2_LACCA : 250- 256: snlks GklaGvG idtye DHGY_CUCSA : 169- 174: kgqtv Gvi-GaG rigsa DHGY_HYPME : 151- 156: dnktl Giy-GfG sigqa FDH_EMENI : 164- 169: enkvv Gtv-GvG riger FDH_EMENI : 287- 293: ealks GhlrGyG gdvwf FDH_HANPO : 273- 279: aavks GqlrGyG gdvwf FDH_NEUCR : 169- 174: egkvv Gtv-GvG riger FDH_NEUCR : 275- 281: ealks GhlrGyG gdvwf FDH_PSESR : 371- 377: livqg GalaGtG ahsys FDH_SOLTU : 196- 201: egktv Gtv-GaG rigrl LDHD_LACDE : 149- 154: rdqvv Gvv-GtG higqv LDHD_LACHE : 149- 154: rdqvv Gvv-GtG higqv LDHD_LACPL : 149- 154: ntmtv Gvi-GtG rigra PDXB_ECOLI : 120- 125: ydrtv Giv-GvG nvgrr SERA_BACSU : 36- 41: ygktl Giv-GlG rigse SERA_ECOLI : 154- 159: rgkkl Gii-GyG higtq SERA_HAEIN : 156- 161: rgkkl Gii-GyG higsq SERX_YEAST : 202- 207: rgktl Gii-GyG higsq SERY_YEAST : 202- 207: rgktl Gii-GyG higsq VANH_ENTFC : 150- 155: sdmtv Gvv-GtG qigka YF56_HAEIN : 150- 155: rgstl Gvf-GkG clgte YIAE_ECOLI : 153- 158: hhktl Giv-GmG rigma YPRA_CORGL : 133- 138: tvail Gag-GiG vrlle B 2: 11.5102 41( 23) L-x(2)-A-x(2,4)-G Occurences: 41(23) DDH_HAEIN : 84- 91: fnnvd LkaAqel-G iqvvr DDH_ZYMMO : 222- 228: inget LarAkk--G fylvn DHD2_LACCA : 268- 274: etedl LnlAkh--G sfkdp DHGY_CUCSA : 78- 86: dwgev LfsAlsraG gkafs DHGY_HYPME : 114- 121: amlll LgsArra-G egekm DHGY_HYPME : 248- 256: lvdne LvvAaleaG rlaya DHGY_HYPME : 306- 312: hqand LidAlf--G gadms DHGY_HYPME : 306- 313: hqand LidAlfg-G admsy FDH_EMENI : 81- 88: akakn LklAvta-G igsdh FDH_EMENI : 96- 104: sdhvd LdaAnktnG gitva FDH_EMENI : 308- 316: pkehp LryAehpwG ggnat FDH_HANPO : 87- 93: kklkl LvvAgv--G sdhid FDH_NEUCR : 86- 93: arakk LklAvta-G igsdh FDH_NEUCR : 101- 109: sdhvd LnaAnktnG gitva FDH_NEUCR : 296- 304: pqdhp LryAknpfG ggnam FDH_PSESR : 114- 121: akakn LklAlta-G igsdh FDH_SOLTU : 51- 59: mnpnf LgcAenalG irewl FDH_SOLTU : 118- 124: knlql LltAgi--G sdhvd FDH_SOLTU : 130- 137: sdhvd LkaAaaa-G ltvae FDH_SOLTU : 138- 145: aaaag LtvAevt-G sntvs LDHD_LACDE : 133- 140: varhd LrwApti-G revrd LDHD_LACHE : 133- 140: makrd LrwApti-G revrd LDHD_LACPL : 244- 251: idsed LikAlds-G kvaga PDXB_ECOLI : 77- 83: vdeaw LkqAgi--G fsaap PDXB_ECOLI : 104- 111: vfssl LmlAerd-G fslyd PDXB_ECOLI : 203- 209: kpgai LinAcr--G avvdn PDXB_ECOLI : 289- 296: valdt LlpApef-G ritlh SERA_BACSU : 132- 139: ideaa LleAlen-G hvaga SERA_BACSU : 164- 172: lvdhp LviAtphlG astke SERA_ECOLI : 90- 97: tnqvd LdaAakr-G ipvfn SERA_ECOLI : 234- 240: kpgsl LinAsr--G tvvdi SERA_HAEIN : 92- 99: tnqvd LnaAkar-G ipvfn SERA_HAEIN : 236- 242: kqgai LinAar--G tvvdi SERA_HAEIN : 250- 257: vdida LaqAlkd-G klqga SERX_YEAST : 138- 145: tnqvd LdyAtsr-G iavfn SERY_YEAST : 138- 145: tnqvd LkyAask-G iavfn VANH_ENTFC : 240- 247: vdtye LvkAlen-G klgga YF56_HAEIN : 80- 87: tnnvd LvaAeem-G iavrn YF56_HAEIN : 242- 249: idela LvdAlkt-G hlgga YIAE_ECOLI : 250- 257: vdena LiaAlqk-G eihaa YIAE_ECOLI : 309- 315: cavdn LidAlq--G kvekn YPRA_CORGL : 226- 233: intdd LvdAlnn-G tiaga C 3: 11.5102 32( 23) G-x(2)-V-x(2,4)-A Occurences: 32(23) DDH_HAEIN : 91- 99: aaqel GiqVvrvpA yspea DDH_ZYMMO : 237- 244: vntsr GglVdtk-A viksl DHD2_LACCA : 226- 233: nlmkp GaiVint-A rpnli DHGY_CUCSA : 165- 173: gnllk GqtVgvigA grigs DHGY_HYPME : 91- 97: ackar GikVgn--A phgvt DHGY_HYPME : 100- 106: gnaph GvtVat--A eiaml DHGY_HYPME : 232- 239: kslpq GaiVvnt-A rgdlv FDH_EMENI : 113- 120: vaevt GsnVvsv-A ehvvm FDH_HANPO : 116- 123: vlevt GsnVvsv-A ehvvm FDH_HANPO : 148- 155: qiisg GwnVaei-A kdsfd FDH_NEUCR : 118- 125: vaevt GsnVvsv-A ehvlm FDH_PSESR : 203- 211: aagri GlaVlrrlA pfdvh FDH_SOLTU : 192- 200: aydle GktVgtvgA grigr LDHD_LACDE : 236- 243: vnvsr GplVdtd-A virgl LDHD_LACHE : 236- 243: vncsr GrlVdtd-A virgl LDHD_LACPL : 173- 180: gakvi GydVyrn-A eleke PDXB_ECOLI : 209- 216: inacr GavVdnt-A lltcl SERA_BACSU : 196- 202: lqfak GlpVms--A inlpa SERA_ECOLI : 97- 103: aaakr GipVfn--A pfsnt SERA_ECOLI : 240- 247: inasr GtvVdip-A lcdal SERA_ECOLI : 376- 384: tsaqm GyvVidieA dedva SERA_HAEIN : 99- 105: aakar GipVfn--A pfsnt SERA_HAEIN : 242- 249: inaar GtvVdid-A laqal SERX_YEAST : 279- 285: aamkd GayVin--A srgtv SERX_YEAST : 360- 366: aqssi GieVat--A lskyi SERY_YEAST : 279- 285: aamkd GayVin--A srgtv SERY_YEAST : 360- 366: aqssi GieVat--A lskyi VANH_ENTFC : 94- 101: aakrm GitVdnv-A yspds YF56_HAEIN : 158- 165: gkgcl GteVgrl-A navgm YF56_HAEIN : 169- 175: lanav GmkVly--A ehkda YIAE_ECOLI : 242- 249: inagr GpvVden-A liaal YPRA_CORGL : 159- 165: avnns GrpVeg--A detfa D 4: 11.5102 50( 23) G-x(2,3)-V-x(2,3)-A Occurences: 50(23) DDH_HAEIN : 78- 86: alrca GfnnVdlkA aqelg DDH_HAEIN : 91- 99: aaqel GiqvVrvpA yspea DDH_ZYMMO : 78- 86: alrca GynnVdldA akkln DDH_ZYMMO : 237- 244: vntsr Ggl-VdtkA viksl DHD2_LACCA : 226- 233: nlmkp Gai-VintA rpnli DHGY_CUCSA : 96- 104: snmav GynnVdvnA ankyg DHGY_HYPME : 91- 97: ackar Gik-Vgn-A phgvt DHGY_HYPME : 100- 106: gnaph Gvt-Vat-A eiaml DHGY_HYPME : 232- 239: kslpq GaivVnt-A rgdlv DHGY_HYPME : 232- 239: kslpq Gai-VvntA rgdlv FDH_EMENI : 90- 98: vtagi GsdhVdldA anktn FDH_EMENI : 113- 120: vaevt GsnvVsv-A ehvvm FDH_EMENI : 113- 120: vaevt Gsn-VvsvA ehvvm FDH_EMENI : 144- 152: dqirn GdwnVaavA knefd FDH_EMENI : 263- 270: lmyhk GswlVnt-A rgaiv FDH_HANPO : 116- 123: vlevt GsnvVsv-A ehvvm FDH_HANPO : 116- 123: vlevt Gsn-VvsvA ehvvm FDH_HANPO : 147- 155: eqiis GgwnVaeiA kdsfd FDH_HANPO : 148- 155: qiisg Gwn-VaeiA kdsfd FDH_HANPO : 249- 256: khfkk GawlVnt-A rgaic FDH_NEUCR : 95- 103: vtagi GsdhVdlnA anktn FDH_NEUCR : 118- 125: vaevt GsnvVsv-A ehvlm FDH_NEUCR : 118- 125: vaevt Gsn-VvsvA ehvlm FDH_NEUCR : 149- 156: eqiqe GrwdVae-A aknef FDH_NEUCR : 149- 157: eqiqe GrwdVaeaA knefd FDH_NEUCR : 251- 258: skmkk GswlVnt-A rgaiv FDH_PSESR : 276- 283: klfkr GayiVnt-A rgklc FDH_SOLTU : 124- 132: ltagi GsdhVdlkA aaaag FDH_SOLTU : 145- 152: vaevt GsntVsv-A edelm FDH_SOLTU : 176- 184: hqvin GewnVaaiA hrayd FDH_SOLTU : 277- 284: aklkk GvliVnn-A rgaim LDHD_LACDE : 236- 243: vnvsr Gpl-VdtdA virgl LDHD_LACHE : 236- 243: vncsr Grl-VdtdA virgl LDHD_LACPL : 173- 180: gakvi Gyd-VyrnA eleke PDXB_ECOLI : 68- 75: gtata GtdhVde-A wlkqa PDXB_ECOLI : 209- 216: inacr Gav-VdntA lltcl PDXB_ECOLI : 266- 273: egkar GttqVfe-A yskfi PDXB_ECOLI : 369- 377: llckl GfnaVhhpA r SERA_BACSU : 196- 202: lqfak Glp-Vms-A inlpa SERA_ECOLI : 84- 92: gcfci GtnqVdldA aakrg SERA_ECOLI : 97- 103: aaakr Gip-Vfn-A pfsnt SERA_ECOLI : 240- 247: inasr Gtv-VdipA lcdal SERA_HAEIN : 86- 94: gcfci GtnqVdlnA akarg SERA_HAEIN : 99- 105: aakar Gip-Vfn-A pfsnt SERA_HAEIN : 242- 249: inaar Gtv-VdidA laqal SERX_YEAST : 279- 285: aamkd Gay-Vin-A srgtv SERX_YEAST : 360- 366: aqssi Gie-Vat-A lskyi SERY_YEAST : 279- 285: aamkd Gay-Vin-A srgtv SERY_YEAST : 360- 366: aqssi Gie-Vat-A lskyi VANH_ENTFC : 94- 101: aakrm Git-VdnvA yspds YF56_HAEIN : 74- 82: aitat GtnnVdlvA aeemg YF56_HAEIN : 158- 165: gkgcl Gte-VgrlA navgm YF56_HAEIN : 169- 175: lanav Gmk-Vly-A ehkda YIAE_ECOLI : 242- 249: inagr Gpv-VdenA liaal YPRA_CORGL : 159- 165: avnns Grp-Veg-A detfa E 5: 11.5102 24( 23) G-x(0,1)-G-x(2,3)-G Occurences: 24(23) DDH_HAEIN : 151- 156: tvgvi GtGki-G iavmr DDH_ZYMMO : 151- 156: tvgii GvGhi-G svfah DHD2_LACCA : 152- 157: tvgvm GtGhi-G qvaik DHGY_CUCSA : 172- 177: tvgvi GaGri-G sayar DHGY_HYPME : 154- 159: tlgiy GfGsi-G qalak FDH_EMENI : 167- 172: vvgtv GvGri-G ervlr FDH_HANPO : 170- 175: viati GaGri-G yrvle FDH_NEUCR : 11- 15: avlyd G-Gkh-G eevpe FDH_NEUCR : 172- 177: vvgtv GvGri-G ervlr FDH_PSESR : 370- 375: ylivq G-GalaG tgahs FDH_SOLTU : 199- 204: tvgtv GaGri-G rlllq LDHD_LACDE : 152- 157: vvgvv GtGhi-G qvfmq LDHD_LACHE : 152- 157: vvgvv GtGhi-G qvfmr LDHD_LACPL : 152- 157: tvgvi GtGri-G raaid PDXB_ECOLI : 123- 128: tvgiv GvGnv-G rrlqa SERA_BACSU : 39- 44: tlgiv GlGri-G seiaq SERA_ECOLI : 157- 162: klgii GyGhi-G tqlgi SERA_HAEIN : 159- 164: klgii GyGhi-G sqlsi SERX_YEAST : 205- 210: tlgii GyGhi-G sqlsv SERY_YEAST : 205- 210: tlgii GyGhi-G sqlsv VANH_ENTFC : 153- 158: tvgvv GtGqi-G kavie YF56_HAEIN : 153- 158: tlgvf GkGcl-G tevgr YIAE_ECOLI : 156- 161: tlgiv GmGri-G malaq YPRA_CORGL : 133- 138: tvail GaGgi-G vrlle F 6: 11.0102 54( 23) L-x(2,3)-A-x(0,2)-G Occurences: 54(23) DDH_HAEIN : 61- 68: gsrkv LeklAalG vkiva DDH_HAEIN : 74- 78: vkiva Lrc-A--G fnnvd DDH_ZYMMO : 61- 66: anaev LeilA--G lgikl DDH_ZYMMO : 61- 68: anaev LeilAglG iklva DDH_ZYMMO : 74- 78: iklva Lrc-A--G ynnvd DDH_ZYMMO : 222- 228: inget Lar-AkkG fylvn DHD2_LACCA : 267- 274: yeted LlnlAkhG sfkdp DHD2_LACCA : 268- 274: etedl Lnl-AkhG sfkdp DHGY_CUCSA : 82- 86: vlfsa Lsr-A--G gkafs DHGY_CUCSA : 82- 87: vlfsa Lsr-Ag-G kafsn DHGY_HYPME : 162- 168: sigqa LakrAq-G fdmdi DHGY_HYPME : 258- 262: leagr Lay-A--G fdvfa DHGY_HYPME : 306- 312: hqand Lid-AlfG gadms FDH_EMENI : 83- 88: aknlk LavtA--G igsdh FDH_EMENI : 83- 90: aknlk LavtAgiG sdhvd FDH_EMENI : 266- 272: hkgsw LvntAr-G aivvk FDH_HANPO : 6- 10: kvvlv Lyd-A--G khaqd FDH_HANPO : 86- 91: akklk LlvvA--G vgsdh FDH_HANPO : 86- 93: akklk LlvvAgvG sdhid FDH_HANPO : 87- 91: kklkl Lvv-A--G vgsdh FDH_HANPO : 87- 93: kklkl Lvv-AgvG sdhid FDH_HANPO : 252- 258: kkgaw LvntAr-G aicva FDH_NEUCR : 88- 93: akklk LavtA--G igsdh FDH_NEUCR : 88- 95: akklk LavtAgiG sdhvd FDH_NEUCR : 254- 260: kkgsw LvntAr-G aivvk FDH_PSESR : 116- 121: aknlk LaltA--G igsdh FDH_PSESR : 116- 123: aknlk LaltAgiG sdhvd FDH_PSESR : 302- 307: lesgr LagyA--G dvwfp FDH_SOLTU : 117- 122: aknlq LlltA--G igsdh FDH_SOLTU : 117- 124: aknlq LlltAgiG sdhvd FDH_SOLTU : 118- 122: knlql Llt-A--G igsdh FDH_SOLTU : 118- 124: knlql Llt-AgiG sdhvd FDH_SOLTU : 130- 137: sdhvd LkaaAaaG ltvae FDH_SOLTU : 343- 348: tidaq LryaA--G tkdml FDH_SOLTU : 343- 348: tidaq Lry-Aa-G tkdml LDHD_LACDE : 42- 48: petaa LakgAd-G vvvyq LDHD_LACDE : 62- 69: ytaet LqalAdnG itkms LDHD_LACHE : 42- 48: petak LakgAd-G vvvyq LDHD_LACHE : 62- 69: ytadt LqalAdaG vtkms LDHD_LACHE : 65- 69: dtlqa Lad-A--G vtkms LDHD_LACPL : 62- 69: ytaev LnklAdeG vknis LDHD_LACPL : 231- 236: dgayi Lnf-Ar-G tlids PDXB_ECOLI : 77- 81: vdeaw Lkq-A--G igfsa PDXB_ECOLI : 77- 83: vdeaw Lkq-AgiG fsaap PDXB_ECOLI : 203- 209: kpgai Lin-AcrG avvdn PDXB_ECOLI : 260- 266: iagyt LegkAr-G ttqvf PDXB_ECOLI : 326- 331: rddap LrkvA--G ipgef SERA_BACSU : 118- 124: kkgvr LincAr-G giide SERA_BACSU : 118- 125: kkgvr LincArgG iidea SERA_BACSU : 191- 196: vseev Lqf-Ak-G lpvms SERA_ECOLI : 26- 30: kales Lra-A--G ytnie SERA_ECOLI : 90- 97: tnqvd LdaaAkrG ipvfn SERA_ECOLI : 233- 240: mkpgs LlinAsrG tvvdi SERA_ECOLI : 234- 240: kpgsl Lin-AsrG tvvdi SERA_ECOLI : 305- 309: qenig Lev-A--G kliky SERA_ECOLI : 369- 376: iaaqy LqtsAqmG yvvid SERA_HAEIN : 28- 32: saldt Lha-A--G ytnid SERA_HAEIN : 236- 242: kqgai LinaAr-G tvvdi SERA_HAEIN : 236- 242: kqgai Lin-AarG tvvdi SERX_YEAST : 216- 221: sqlsv Lae-Am-G lhvly SERY_YEAST : 138- 145: tnqvd LkyaAskG iavfn SERY_YEAST : 216- 221: sqlsv Lae-Am-G lhvly VANH_ENTFC : 67- 71: silla Lkr-A--G vkyis YF56_HAEIN : 164- 169: tevgr Lan-Av-G mkvly YIAE_ECOLI : 164- 171: rigma LaqrAhfG fnmpi YIAE_ECOLI : 309- 315: cavdn Lid-AlqG kvekn YPRA_CORGL : 287- 291: lrnie Lfe-A--G eqmat G 7: 11.0102 42( 23) A-x(0,1)-L-x(0,2)-G Occurences: 42(23) DDH_HAEIN : 65- 68: vlekl AaL--G vkiva DDH_HAEIN : 66- 68: lekla A-L--G vkiva DDH_HAEIN : 254- 256: qrkig A-L--G mdvye DDH_ZYMMO : 65- 68: vleil AgL--G iklva DHD2_LACCA : 125- 130: mgkvq AqLqaG dyeka DHGY_CUCSA : 57- 60: vedil A-Li-G dkcdg DHGY_CUCSA : 378- 380: ivnak A-L--G na DHGY_HYPME : 251- 256: nelvv AaLeaG rlaya DHGY_HYPME : 252- 256: elvva A-LeaG rlaya DHGY_HYPME : 309- 312: ndlid A-Lf-G gadms DHGY_HYPME : 309- 313: ndlid A-LfgG admsy FDH_EMENI : 283- 287: edvae A-LksG hlrgy FDH_HANPO : 26- 28: gcten A-L--G irdwl FDH_NEUCR : 6- 11: mvkvl AvLydG gkhge FDH_NEUCR : 271- 275: edvae A-LksG hlrgy FDH_PSESR : 117- 121: knlkl A-LtaG igsdh FDH_PSESR : 296- 300: davar A-LesG rlagy FDH_PSESR : 372- 375: ivqgg A-La-G tgahs FDH_SOLTU : 57- 59: gcaen A-L--G irewl FDH_SOLTU : 272- 277: dkeri AkLkkG vlivn LDHD_LACDE : 40- 45: ltpet AaLakG adgvv LDHD_LACDE : 41- 45: tpeta A-LakG adgvv LDHD_LACHE : 40- 45: ltpet AkLakG adgvv LDHD_LACPL : 247- 251: edlik A-LdsG kvaga PDXB_ECOLI : 137- 139: qarle A-L--G iktll SERA_BACSU : 135- 139: aalle A-LenG hvaga SERA_BACSU : 260- 264: sfitk AlLs-G flkpr SERA_BACSU : 260- 264: sfitk A-LlsG flkpr SERA_ECOLI : 112- 117: ntrsv AeLviG ellll SERA_HAEIN : 42- 45: dyykk A-Ld-G delke SERA_HAEIN : 114- 119: ntrsv AeLvlG eilll SERA_HAEIN : 228- 233: nvari AqLkqG ailin SERA_HAEIN : 253- 257: dalaq A-LkdG klqga SERX_YEAST : 234- 236: ivtim A-L--G tarqv SERY_YEAST : 160- 165: nsrsv AeLviG eiisl SERY_YEAST : 234- 236: ivtim A-L--G tarqv VANH_ENTFC : 243- 247: yelvk A-LenG klgga YF56_HAEIN : 245- 249: lalvd A-LktG hlgga YIAE_ECOLI : 252- 257: enali AaLqkG eihaa YIAE_ECOLI : 253- 257: nalia A-LqkG eihaa YIAE_ECOLI : 312- 315: dnlid A-Lq-G kvekn YPRA_CORGL : 130- 133: dnktv AiL--G aggig YPRA_CORGL : 130- 135: dnktv AiLgaG gigvr YPRA_CORGL : 229- 233: ddlvd A-LnnG tiaga YPRA_CORGL : 275- 278: nerir A-Lt-G eltlr H 8: 11.0102 30( 23) T-x(0,1)-E-x(1,3)-A Occurences: 30(23) DDH_HAEIN : 300- 303: hqafl T-Ee--A ltnia DDH_ZYMMO : 35- 39: lnerl TkEt--A ekakd DDH_ZYMMO : 38- 42: rltke TaEk--A kdaea DHD2_LACCA : 38- 42: flden TvEw--A kgfdg DHD2_LACCA : 300- 303: hiayy T-Et--A vhnmv DHGY_CUCSA : 120- 124: tpgvl T-Ett-A elaas DHGY_CUCSA : 123- 127: vltet TaEl--A aslsl DHGY_CUCSA : 123- 128: vltet TaEla-A slsla DHGY_CUCSA : 328- 333: saskw TrEgm-A tlaal DHGY_HYPME : 105- 109: gvtva TaEi--A mllll FDH_EMENI : 71- 76: hpgyl TaErl-A kaknl FDH_HANPO : 23- 26: rlygc T-En--A lgird FDH_NEUCR : 76- 81: hpgyl TaErl-A rakkl FDH_PSESR : 104- 109: wpayl TpEri-A kaknl FDH_SOLTU : 21- 26: sslvf TrElq-A spgpk LDHD_LACDE : 36- 40: tdkll TpEt--A alakg LDHD_LACDE : 36- 41: tdkll TpEta-A lakga LDHD_LACDE : 58- 64: qqldy TaEtlqA ladng LDHD_LACHE : 36- 40: tdkll TpEt--A klakg LDHD_LACPL : 301- 304: htafy T-Et--A vhnmv PDXB_ECOLI : 259- 264: hiagy TlEgk-A rgttq SERA_BACSU : 66- 70: fdpfl TeEr--A kkigv SERA_BACSU : 66- 70: fdpfl T-Eer-A kkigv SERA_ECOLI : 267- 270: idvfp T-Ep--A tnsdp SERA_HAEIN : 67- 73: srthl TaEmieA apkli SERX_YEAST : 352- 355: higgs T-Ee--A qssig SERY_YEAST : 352- 355: higgs T-Ee--A qssig VANH_ENTFC : 237- 243: gplvd TyElvkA lengk VANH_ENTFC : 297- 300: htayy T-Eq--A lrdtv YF56_HAEIN : 124- 129: wlrdq T-EakwA eskqf YIAE_ECOLI : 39- 44: nlspq TvEqn-A aifae YIAE_ECOLI : 39- 45: nlspq TvEqnaA ifaea YIAE_ECOLI : 104- 108: tptvl T-Etv-A dtlma YPRA_CORGL : 269- 275: phtan TnErirA ltgel I 9: 11.0102 59( 23) L-x(3,5)-D-x(0,1)-V Occurences: 59(23) DDH_HAEIN : 304- 310: lteea Ltnia-D-V tlsni DDH_ZYMMO : 137- 142: fsleg Ligl--D-V hdktv DDH_ZYMMO : 254- 261: lkakh LggyaaD-V yeeeg DHD2_LACCA : 194- 200: vsled Lfkqs-D-V idlhv DHGY_CUCSA : 58- 66: edila LigdkcDgV igqlt DHGY_CUCSA : 234- 239: smdev Lrea--D-V islhp DHGY_HYPME : 258- 265: leagr LayagfD-V fagep FDH_EMENI : 289- 296: lksgh LrgyggD-V wfpqp FDH_HANPO : 33- 40: girdw LekqghD-V vvtsd FDH_HANPO : 33- 41: girdw LekqghDvV vtsdk FDH_HANPO : 217- 224: hdike Lvaqa-DiV tincp FDH_HANPO : 275- 282: vksgq LrgyggD-V wfpqp FDH_NEUCR : 220- 225: dleem Laqc--D-V vtinc FDH_NEUCR : 220- 226: dleem Laqc--DvV tincp FDH_NEUCR : 277- 284: lksgh LrgyggD-V wfpqp FDH_PSESR : 4- 12: akv LcvlydDpV dgypk FDH_PSESR : 87- 92: vfere Lvda--D-V visqp FDH_PSESR : 87- 93: vfere Lvda--DvV isqpf FDH_PSESR : 210- 215: avlrr Lapf--D-V hlhyt FDH_PSESR : 287- 293: targk Lcdr--DaV arale FDH_PSESR : 302- 309: lesgr LagyagD-V wfpqp FDH_SOLTU : 246- 252: dldkm Lskc--DiV vintp LDHD_LACDE : 42- 49: petaa Lakga-DgV vvyqq LDHD_LACDE : 195- 201: dsldd Lykqa-D-V islhv LDHD_LACDE : 204- 209: advis Lhvp--D-V panvh LDHD_LACDE : 238- 244: vsrgp Lvdt--DaV irgld LDHD_LACHE : 42- 49: petak Lakga-DgV vvyqq LDHD_LACHE : 195- 201: dsldd Lykqa-D-V islhv LDHD_LACHE : 204- 209: advis Lhvp--D-V panvh LDHD_LACHE : 238- 244: csrgr Lvdt--DaV irgld LDHD_LACPL : 34- 40: klvpe Llte--DnV dlakg LDHD_LACPL : 195- 201: dtlde Lyaqa-D-V itlhv LDHD_LACPL : 285- 291: kvfmn Lfnr--DnV litph PDXB_ECOLI : 227- 233: negqk Lsvvl-D-V wegep PDXB_ECOLI : 312- 319: ptlkr LvhlvyD-V rrdda SERA_BACSU : 404- 411: kivke Ltnvp-DiV svkli SERA_ECOLI : 199- 205: qhlsd Llnms-D-V vslhv SERA_ECOLI : 199- 206: qhlsd Llnms-DvV slhvp SERA_ECOLI : 200- 205: hlsdl Lnms--D-V vslhv SERA_ECOLI : 200- 206: hlsdl Lnms--DvV slhvp SERA_ECOLI : 257- 264: laskh LagaaiD-V fptep SERA_ECOLI : 280- 286: pftsp Lcef--DnV lltph SERA_HAEIN : 48- 55: ldgde LkeaikD-V hfigl SERA_HAEIN : 201- 207: rslee Llssc-D-V vslhv SERA_HAEIN : 201- 208: rslee Llssc-DvV slhvp SERA_HAEIN : 202- 207: sleel Lssc--D-V vslhv SERA_HAEIN : 202- 208: sleel Lssc--DvV slhvp SERA_HAEIN : 259- 266: lkdgk LqgaaiD-V fpvep SERA_HAEIN : 282- 288: efisp Lref--DnV iltph SERX_YEAST : 94- 101: lpeee LiekikD-V haigi SERX_YEAST : 222- 230: aeamg LhvlyyDiV timal SERX_YEAST : 247- 254: stlde Llnks-DfV tlhvp SERX_YEAST : 248- 254: tldel Lnks--DfV tlhvp SERY_YEAST : 94- 101: lpede LiekikD-V haigi SERY_YEAST : 222- 230: aeamg LhvlyyDiV timal SERY_YEAST : 247- 254: stlde Llnks-DfV tlhvp SERY_YEAST : 248- 254: tldel Lnks--DfV tlhvp VANH_ENTFC : 191- 198: vpfde Llqns-DiV tlhvp VANH_ENTFC : 192- 198: pfdel Lqns--DiV tlhvp VANH_ENTFC : 249- 256: lengk LggaalD-V legee YF56_HAEIN : 194- 200: pfdev Lkqa--DiV tlhcp YF56_HAEIN : 251- 258: lktgh LggaalD-V mvkep YIAE_ECOLI : 201- 208: cdldt Llqes-DfV clilp YIAE_ECOLI : 202- 208: dldtl Lqes--DfV clilp YPRA_CORGL : 220- 227: vgrgp Lintd-DlV dalnn YPRA_CORGL : 254- 260: pdshp Lwem--DnV vitph J 10: 11.0102 43( 23) L-x(0,2)-G-x(2,3)-G Occurences: 43(23) DDH_HAEIN : 134- 139: eanfs Le-Gli-G fnmyg DDH_ZYMMO : 134- 139: ennfs Le-Gli-G ldvhd DHD2_LACCA : 247- 254: amlsn LksGklaG vgidt DHGY_CUCSA : 162- 169: lfvgn LlkGqtvG vigag DHGY_CUCSA : 163- 169: fvgnl Lk-GqtvG vigag DHGY_CUCSA : 341- 346: aalnv L--GkikG ypvws DHGY_HYPME : 150- 154: ldnkt L--Giy-G fgsig FDH_EMENI : 284- 291: dvaea LksGhlrG yggdv FDH_EMENI : 289- 294: lksgh Lr-Gyg-G dvwfp FDH_HANPO : 230- 236: tincp LhaGsk-G lvnae FDH_HANPO : 275- 280: vksgq Lr-Gyg-G dvwfp FDH_NEUCR : 8- 15: kvlav LydGgkhG eevpe FDH_NEUCR : 163- 169: knefd Le-GkvvG tvgvg FDH_NEUCR : 272- 279: dvaea LksGhlrG yggdv FDH_NEUCR : 277- 282: lksgh Lr-Gyg-G dvwfp FDH_PSESR : 49- 55: ftpgq Ll-GsvsG elglr FDH_PSESR : 50- 55: tpgql L--GsvsG elglr FDH_PSESR : 297- 304: avara LesGrlaG yagdv FDH_PSESR : 302- 307: lesgr La-Gya-G dvwfp FDH_SOLTU : 190- 196: hrayd Le-GktvG tvgag LDHD_LACDE : 42- 48: petaa LakGad-G vvvyq LDHD_LACDE : 248- 255: avirg LdsGkvfG yamdv LDHD_LACHE : 42- 48: petak LakGad-G vvvyq LDHD_LACHE : 248- 255: avirg LdsGkifG fvmdt LDHD_LACPL : 42- 48: ednvd LakGfd-G advyq LDHD_LACPL : 248- 255: dlika LdsGkvaG aalvt PDXB_ECOLI : 260- 266: iagyt Le-GkarG ttqvf SERA_BACSU : 30- 36: yvgse Ly-GktlG ivglg SERA_BACSU : 35- 39: lygkt L--Giv-G lgrig SERA_BACSU : 40- 44: lgivg L--Gri-G seiaq SERA_BACSU : 136- 143: allea LenGhvaG aaldv SERA_ECOLI : 153- 157: argkk L--Gii-G yghig SERA_HAEIN : 155- 159: vrgkk L--Gii-G yghig SERA_HAEIN : 254- 261: alaqa LkdGklqG aaidv SERX_YEAST : 201- 205: vrgkt L--Gii-G yghig SERY_YEAST : 201- 205: vrgkt L--Gii-G yghig VANH_ENTFC : 244- 250: elvka LenGkl-G gaald VANH_ENTFC : 244- 251: elvka LenGklgG aaldv YF56_HAEIN : 149- 153: vrgst L--Gvf-G kgclg YF56_HAEIN : 157- 162: fgkgc L--GtevG rlana YF56_HAEIN : 246- 252: alvda LktGhl-G gaald YF56_HAEIN : 246- 253: alvda LktGhlgG aaldv YIAE_ECOLI : 152- 156: vhhkt L--Giv-G mgrig YPRA_CORGL : 132- 136: ktvai L--Gag-G igvrl YPRA_CORGL : 132- 138: ktvai LgaGgi-G vrlle YPRA_CORGL : 230- 237: dlvda LnnGtiaG aaldv K 11: 11.0102 41( 23) D-x(3,4)-A-x(2,4)-G Occurences: 41(23) DDH_HAEIN : 83- 91: gfnnv Dlka-Aqel-G iqvvr DDH_ZYMMO : 179- 187: ykphp Dpel-Aekv-G frfts DDH_ZYMMO : 316- 323: hsilq Disd-Aea--G kempd DHD2_LACCA : 131- 140: qlqag Dyek-AgtfiG kelgq DHD2_LACCA : 266- 274: eyete DllnlAkh--G sfkdp DHGY_CUCSA : 101- 109: gynnv Dvna-Anky-G vavgn DHGY_CUCSA : 142- 152: rivea DefmrAgrydG wlpnl DHGY_HYPME : 305- 312: ahqan Dlid-Alf--G gadms DHGY_HYPME : 305- 313: ahqan Dlid-Alfg-G admsy FDH_EMENI : 5- 15: mvly DggshAkdqpG llgtt FDH_EMENI : 95- 104: gsdhv Dlda-AnktnG gitva FDH_EMENI : 279- 287: ivvke Dvae-Alks-G hlrgy FDH_HANPO : 265- 273: icvae Dvaa-Avks-G qlrgy FDH_NEUCR : 100- 109: gsdhv Dlna-AnktnG gitva FDH_NEUCR : 267- 275: ivvke Dvae-Alks-G hlrgy FDH_PSESR : 291- 300: klcdr DavarAles-G rlagy FDH_SOLTU : 129- 137: gsdhv DlkaaAaa--G ltvae FDH_SOLTU : 129- 137: gsdhv Dlka-Aaaa-G ltvae FDH_SOLTU : 267- 277: tkgmf DkeriAklkkG vlivn LDHD_LACDE : 84- 92: gvdni Dmak-Akel-G fqitn LDHD_LACDE : 132- 140: kvarh Dlrw-Apti-G revrd LDHD_LACHE : 60- 69: ldyta Dtlq-AladaG vtkms LDHD_LACHE : 84- 92: gvdni Dmdk-Akel-G fqitn LDHD_LACHE : 132- 140: kmakr Dlrw-Apti-G revrd LDHD_LACHE : 218- 227: vhmin Dksi-AemkdG vvivn LDHD_LACPL : 38- 48: ellte DnvdlAkgfdG advyq LDHD_LACPL : 243- 251: lidse Dlik-Alds-G kvaga PDXB_ECOLI : 146- 153: ktllc Dppr-Adr--G degdf PDXB_ECOLI : 287- 296: qhval DtllpApef-G ritlh SERA_BACSU : 369- 378: ilgdn Dini-AtmqvG rkekg SERA_ECOLI : 89- 97: gtnqv DldaaAkr--G ipvfn SERA_ECOLI : 89- 97: gtnqv Dlda-Aakr-G ipvfn SERA_HAEIN : 37- 45: gytni DyykkAld--G delke SERA_HAEIN : 91- 99: gtnqv Dlna-Akar-G ipvfn SERA_HAEIN : 248- 257: tvvdi DalaqAlkd-G klqga SERX_YEAST : 137- 145: gtnqv Dldy-Atsr-G iavfn SERY_YEAST : 11- 21: adnlq DsfqrAmnfsG spgav SERY_YEAST : 137- 145: gtnqv DlkyaAsk--G iavfn SERY_YEAST : 137- 145: gtnqv Dlky-Aask-G iavfn VANH_ENTFC : 86- 94: gcnhi Dtta-Akrm-G itvdn YF56_HAEIN : 79- 87: gtnnv Dlva-Aeem-G iavrn YIAE_ECOLI : 307- 315: aacav DnlidAlq--G kvekn YPRA_CORGL : 125- 133: kswlh DnktvAil--G aggig YPRA_CORGL : 125- 135: kswlh DnktvAilgaG gigvr YPRA_CORGL : 224- 233: plint DdlvdAlnn-G tiaga YPRA_CORGL : 225- 233: lintd Dlvd-Alnn-G tiaga L 12: 11.0102 44( 23) D-x(3,5)-A-x(3,4)-G Occurences: 44(23) DDH_HAEIN : 83- 91: gfnnv Dlka--Aqel-G iqvvr DDH_ZYMMO : 179- 187: ykphp Dpel--Aekv-G frfts DHD2_LACCA : 80- 91: rnvgt DnidmtAmkqyG irlsn DHD2_LACCA : 131- 140: qlqag Dyek--AgtfiG kelgq DHGY_CUCSA : 101- 109: gynnv Dvna--Anky-G vavgn DHGY_CUCSA : 142- 152: rivea Defmr-AgrydG wlpnl DHGY_HYPME : 80- 91: ysigf DhidldAckarG ikvgn DHGY_HYPME : 245- 256: rgdlv DnelvvAaleaG rlaya DHGY_HYPME : 305- 313: ahqan Dlid--Alfg-G admsy FDH_EMENI : 5- 15: mvly Dggsh-AkdqpG llgtt FDH_EMENI : 95- 104: gsdhv Dlda--AnktnG gitva FDH_EMENI : 279- 287: ivvke Dvae--Alks-G hlrgy FDH_HANPO : 265- 273: icvae Dvaa--Avks-G qlrgy FDH_NEUCR : 100- 109: gsdhv Dlna--AnktnG gitva FDH_NEUCR : 267- 275: ivvke Dvae--Alks-G hlrgy FDH_NEUCR : 293- 304: qpapq DhplryAknpfG ggnam FDH_PSESR : 291- 300: klcdr Davar-Ales-G rlagy FDH_SOLTU : 126- 137: agigs DhvdlkAaaaaG ltvae FDH_SOLTU : 129- 137: gsdhv Dlka--Aaaa-G ltvae FDH_SOLTU : 267- 277: tkgmf Dkeri-AklkkG vlivn LDHD_LACDE : 84- 92: gvdni Dmak--Akel-G fqitn LDHD_LACDE : 132- 140: kvarh Dlrw--Apti-G revrd LDHD_LACHE : 60- 69: ldyta Dtlq--AladaG vtkms LDHD_LACHE : 84- 92: gvdni Dmdk--Akel-G fqitn LDHD_LACHE : 132- 140: kmakr Dlrw--Apti-G revrd LDHD_LACHE : 218- 227: vhmin Dksi--AemkdG vvivn LDHD_LACPL : 38- 48: ellte Dnvdl-AkgfdG advyq LDHD_LACPL : 243- 251: lidse Dlik--Alds-G kvaga PDXB_ECOLI : 287- 296: qhval Dtllp-Apef-G ritlh SERA_BACSU : 161- 172: dnklv DhplviAtphlG astke SERA_BACSU : 367- 378: grilg DndiniAtmqvG rkekg SERA_BACSU : 369- 378: ilgdn Dini--AtmqvG rkekg SERA_ECOLI : 89- 97: gtnqv Dlda--Aakr-G ipvfn SERA_HAEIN : 91- 99: gtnqv Dlna--Akar-G ipvfn SERA_HAEIN : 248- 257: tvvdi Dalaq-Alkd-G klqga SERX_YEAST : 137- 145: gtnqv Dldy--Atsr-G iavfn SERY_YEAST : 11- 21: adnlq Dsfqr-AmnfsG spgav SERY_YEAST : 137- 145: gtnqv Dlky--Aask-G iavfn VANH_ENTFC : 86- 94: gcnhi Dtta--Akrm-G itvdn YF56_HAEIN : 79- 87: gtnnv Dlva--Aeem-G iavrn YIAE_ECOLI : 246- 257: rgpvv DenaliAalqkG eihaa YPRA_CORGL : 125- 135: kswlh Dnktv-AilgaG gigvr YPRA_CORGL : 224- 233: plint Ddlvd-Alnn-G tiaga YPRA_CORGL : 225- 233: lintd Dlvd--Alnn-G tiaga M 13: 11.0102 45( 23) L-x(4,5)-D-x(0,2)-V Occurences: 45(23) DDH_HAEIN : 304- 310: lteea Ltnia-D--V tlsni DDH_ZYMMO : 254- 261: lkakh LggyaaD--V yeeeg DHD2_LACCA : 194- 200: vsled Lfkqs-D--V idlhv DHGY_CUCSA : 32- 40: trwin Llieq-DcrV eicte DHGY_CUCSA : 58- 66: edila LigdkcDg-V igqlt DHGY_HYPME : 258- 265: leagr LayagfD--V fagep FDH_EMENI : 289- 296: lksgh LrgyggD--V wfpqp FDH_HANPO : 33- 40: girdw LekqghD--V vvtsd FDH_HANPO : 33- 41: girdw LekqghDv-V vtsdk FDH_HANPO : 33- 42: girdw LekqghDvvV tsdke FDH_HANPO : 53- 62: gqnsv LeknisDadV iistp FDH_HANPO : 217- 224: hdike Lvaqa-Di-V tincp FDH_HANPO : 275- 282: vksgq LrgyggD--V wfpqp FDH_NEUCR : 277- 284: lksgh LrgyggD--V wfpqp FDH_PSESR : 4- 12: akv LcvlydDp-V dgypk FDH_PSESR : 4- 12: akv Lcvly-DdpV dgypk FDH_PSESR : 129- 137: sdhvd Lqsai-DrnV tvaev FDH_PSESR : 302- 309: lesgr LagyagD--V wfpqp FDH_SOLTU : 84- 93: gpdce LekhipDlhV listp LDHD_LACDE : 42- 49: petaa Lakga-Dg-V vvyqq LDHD_LACDE : 42- 50: petaa Lakga-DgvV vyqql LDHD_LACDE : 195- 201: dsldd Lykqa-D--V islhv LDHD_LACHE : 42- 49: petak Lakga-Dg-V vvyqq LDHD_LACHE : 42- 50: petak Lakga-DgvV vyqql LDHD_LACHE : 62- 70: ytadt Lqala-DagV tkmsl LDHD_LACHE : 195- 201: dsldd Lykqa-D--V islhv LDHD_LACPL : 62- 70: ytaev Lnkla-DegV knisl LDHD_LACPL : 195- 201: dtlde Lyaqa-D--V itlhv LDHD_LACPL : 272- 281: ifnkd LegqtiDdkV fmnlf PDXB_ECOLI : 227- 233: negqk Lsvvl-D--V wegep PDXB_ECOLI : 312- 319: ptlkr LvhlvyD--V rrdda SERA_BACSU : 266- 274: llsgf Lkprv-DstV nevna SERA_BACSU : 404- 411: kivke Ltnvp-Di-V svkli SERA_ECOLI : 199- 205: qhlsd Llnms-D--V vslhv SERA_ECOLI : 199- 206: qhlsd Llnms-Dv-V slhvp SERA_ECOLI : 257- 264: laskh LagaaiD--V fptep SERA_HAEIN : 48- 55: ldgde LkeaikD--V hfigl SERA_HAEIN : 201- 207: rslee Llssc-D--V vslhv SERA_HAEIN : 201- 208: rslee Llssc-Dv-V slhvp SERA_HAEIN : 259- 266: lkdgk LqgaaiD--V fpvep SERX_YEAST : 94- 101: lpeee LiekikD--V haigi SERX_YEAST : 222- 230: aeamg LhvlyyDi-V timal SERX_YEAST : 247- 254: stlde Llnks-Df-V tlhvp SERY_YEAST : 94- 101: lpede LiekikD--V haigi SERY_YEAST : 222- 230: aeamg LhvlyyDi-V timal SERY_YEAST : 247- 254: stlde Llnks-Df-V tlhvp VANH_ENTFC : 191- 198: vpfde Llqns-Di-V tlhvp VANH_ENTFC : 249- 256: lengk LggaalD--V legee YF56_HAEIN : 173- 182: vgmkv LyaehkDatV cregy YF56_HAEIN : 251- 258: lktgh LggaalD--V mvkep YF56_HAEIN : 251- 260: lktgh LggaalDvmV keppe YIAE_ECOLI : 201- 208: cdldt Llqes-Df-V clilp YPRA_CORGL : 220- 227: vgrgp Lintd-Dl-V dalnn N 14: 11.0102 25( 23) G-x(0,1)-G-x(1,3)-G Occurences: 25(23) DDH_HAEIN : 151- 156: tvgvi GtGki-G iavmr DDH_ZYMMO : 151- 156: tvgii GvGhi-G svfah DHD2_LACCA : 152- 157: tvgvm GtGhi-G qvaik DHGY_CUCSA : 172- 177: tvgvi GaGri-G sayar DHGY_HYPME : 154- 159: tlgiy GfGsi-G qalak FDH_EMENI : 167- 172: vvgtv GvGri-G ervlr FDH_HANPO : 170- 175: viati GaGri-G yrvle FDH_NEUCR : 11- 15: avlyd G-Gkh-G eevpe FDH_NEUCR : 172- 177: vvgtv GvGri-G ervlr FDH_PSESR : 370- 375: ylivq G-GalaG tgahs FDH_SOLTU : 199- 204: tvgtv GaGri-G rlllq LDHD_LACDE : 152- 157: vvgvv GtGhi-G qvfmq LDHD_LACHE : 152- 157: vvgvv GtGhi-G qvfmr LDHD_LACPL : 152- 157: tvgvi GtGri-G raaid PDXB_ECOLI : 123- 128: tvgiv GvGnv-G rrlqa SERA_BACSU : 39- 44: tlgiv GlGri-G seiaq SERA_ECOLI : 157- 162: klgii GyGhi-G tqlgi SERA_HAEIN : 159- 164: klgii GyGhi-G sqlsi SERX_YEAST : 205- 210: tlgii GyGhi-G sqlsv SERY_YEAST : 205- 210: tlgii GyGhi-G sqlsv VANH_ENTFC : 153- 158: tvgvv GtGqi-G kavie YF56_HAEIN : 153- 158: tlgvf GkGcl-G tevgr YIAE_ECOLI : 156- 161: tlgiv GmGri-G malaq YPRA_CORGL : 133- 138: tvail GaGgi-G vrlle YPRA_CORGL : 135- 138: ailga G-Gi--G vrlle O 15: 11.0102 74( 23) A-x(1,3)-G-x(2,3)-V Occurences: 74(23) DDH_HAEIN : 65- 72: vlekl Aal-GvkiV alrca DDH_HAEIN : 66- 72: lekla Al--GvkiV alrca DDH_HAEIN : 87- 94: vdlka AqelGiq-V vrvpa DDH_HAEIN : 87- 95: vdlka AqelGiqvV rvpay DDH_HAEIN : 254- 259: qrkig Al--Gmd-V yener DDH_ZYMMO : 65- 72: vleil Agl-GiklV alrca DDH_ZYMMO : 225- 232: etlar Akk-GfylV ntsrg DHD2_LACCA : 5- 10: mkii Ay--Gar-V deiqy DHGY_CUCSA : 94- 100: afsnm Av--GynnV dvnaa DHGY_CUCSA : 105- 112: vdvna AnkyGva-V gntpg DHGY_CUCSA : 216- 222: geflk An--GeapV twrra DHGY_HYPME : 89- 94: ldack Ar--Gik-V gnaph DHGY_HYPME : 97- 103: ikvgn Aph-Gvt-V ataei DHGY_HYPME : 239- 244: ivvnt Ar--Gdl-V dnelv DHGY_HYPME : 259- 265: eagrl Aya-Gfd-V fagep FDH_EMENI : 87- 94: klavt Agi-GsdhV dldaa FDH_EMENI : 109- 116: ggitv AevtGsn-V vsvae FDH_EMENI : 109- 117: ggitv AevtGsnvV svaeh FDH_EMENI : 270- 275: wlvnt Ar--Gai-V vkedv FDH_EMENI : 270- 276: wlvnt Ar--GaivV kedva FDH_HANPO : 171- 178: iatig AgriGyr-V lerlv FDH_HANPO : 256- 262: wlvnt Ar--GaicV aedva FDH_NEUCR : 92- 99: klavt Agi-GsdhV dlnaa FDH_NEUCR : 114- 121: ggitv AevtGsn-V vsvae FDH_NEUCR : 114- 122: ggitv AevtGsnvV svaeh FDH_NEUCR : 206- 213: saeke Aei-GcrrV adlee FDH_NEUCR : 258- 263: wlvnt Ar--Gai-V vkedv FDH_NEUCR : 258- 264: wlvnt Ar--GaivV kedva FDH_PSESR : 120- 127: klalt Agi-GsdhV dlqsa FDH_PSESR : 199- 206: vgtva AgriGla-V lrrla FDH_SOLTU : 121- 128: qlllt Agi-GsdhV dlkaa FDH_SOLTU : 133- 140: vdlka AaaaGlt-V aevtg FDH_SOLTU : 134- 140: dlkaa Aaa-Glt-V aevtg FDH_SOLTU : 135- 140: lkaaa Aa--Glt-V aevtg FDH_SOLTU : 141- 149: agltv AevtGsntV svaed LDHD_LACDE : 41- 49: tpeta AlakGadgV vvyqq LDHD_LACDE : 43- 49: etaal Ak--GadgV vvyqq LDHD_LACDE : 46- 51: alakg Ad--Gvv-V yqqld LDHD_LACDE : 136- 143: hdlrw AptiGre-V rdqvv LDHD_LACHE : 43- 49: etakl Ak--GadgV vvyqq LDHD_LACHE : 46- 51: klakg Ad--Gvv-V yqqld LDHD_LACHE : 136- 143: rdlrw AptiGre-V rdqvv LDHD_LACPL : 169- 176: fkgfg AkviGyd-V yrnae PDXB_ECOLI : 65- 72: kfvgt Ata-GtdhV deawl PDXB_ECOLI : 206- 212: ailin Acr-Gav-V dntal PDXB_ECOLI : 264- 270: tlegk Ar--GttqV feays SERA_BACSU : 53- 58: aqrrg Af--Gmt-V hvfdp SERA_BACSU : 194- 199: evlqf Ak--Glp-V msain SERA_BACSU : 223- 230: pyhqi AgkiGsl-V sqcmk SERA_ECOLI : 93- 100: vdlda AakrGip-V fnapf SERA_ECOLI : 94- 100: dldaa Akr-Gip-V fnapf SERA_ECOLI : 169- 176: qlgil AeslGmy-V yfydi SERA_ECOLI : 237- 243: sllin Asr-Gtv-V dipal SERA_ECOLI : 373- 379: ylqts Aqm-Gyv-V idiea SERA_HAEIN : 95- 102: vdlna AkarGip-V fnapf SERA_HAEIN : 97- 102: lnaak Ar--Gip-V fnapf SERA_HAEIN : 144- 150: vwnks At--GsheV rgkkl SERA_HAEIN : 171- 178: qlsii AeslGmd-V yfydi SERA_HAEIN : 239- 245: ailin Aar-Gtv-V didal SERA_HAEIN : 240- 245: ilina Ar--Gtv-V didal SERX_YEAST : 141- 148: vdldy AtsrGia-V fnspf SERX_YEAST : 217- 224: qlsvl AeamGlh-V lyydi SERX_YEAST : 219- 224: svlae Am--Glh-V lyydi SERX_YEAST : 275- 282: apqfa AmkdGay-V inasr SERX_YEAST : 285- 291: ayvin Asr-Gtv-V dipsl SERY_YEAST : 141- 148: vdlky AaskGia-V fnspf SERY_YEAST : 142- 148: dlkya Ask-Gia-V fnspf SERY_YEAST : 217- 224: qlsvl AeamGlh-V lyydi SERY_YEAST : 219- 224: svlae Am--Glh-V lyydi SERY_YEAST : 275- 282: apqfa AmkdGay-V inasr SERY_YEAST : 285- 291: ayvin Asr-Gtv-V dipsl VANH_ENTFC : 90- 97: idtta AkrmGit-V dnvay YF56_HAEIN : 72- 78: liait At--GtnnV dlvaa YF56_HAEIN : 83- 90: vdlva AeemGia-V rnvtg YF56_HAEIN : 165- 172: evgrl AnavGmk-V lyaeh YF56_HAEIN : 167- 172: grlan Av--Gmk-V lyaeh YIAE_ECOLI : 239- 245: aifin Agr-Gpv-V denal YIAE_ECOLI : 261- 266: kgeih Aa--Gld-V feqep YPRA_CORGL : 134- 139: vailg Ag--Gig-V rllem P 16: 11.0102 56( 23) L-x(1,2)-A-x(1,3)-G Occurences: 56(23) DDH_HAEIN : 64- 68: kvlek La-Al--G vkiva DDH_HAEIN : 84- 91: fnnvd LkaAqelG iqvvr DDH_ZYMMO : 222- 228: inget LarAkk-G fylvn DDH_ZYMMO : 249- 255: aviks Lk-AkhlG gyaad DHD2_LACCA : 268- 274: etedl LnlAkh-G sfkdp DHGY_CUCSA : 82- 87: vlfsa LsrAg--G kafsn DHGY_CUCSA : 214- 218: aygef Lk-An--G eapvt DHGY_HYPME : 114- 121: amlll LgsArraG egekm DHGY_HYPME : 306- 312: hqand LidAlf-G gadms DHGY_HYPME : 306- 313: hqand LidAlfgG admsy FDH_EMENI : 81- 88: akakn LklAvtaG igsdh FDH_HANPO : 87- 93: kklkl LvvAgv-G sdhid FDH_HANPO : 230- 236: tincp Lh-AgskG lvnae FDH_NEUCR : 86- 93: arakk LklAvtaG igsdh FDH_PSESR : 114- 121: akakn LklAltaG igsdh FDH_PSESR : 118- 123: nlkla Lt-Agi-G sdhvd FDH_PSESR : 189- 195: shayd Le-AmhvG tvaag FDH_SOLTU : 24- 29: vftre Lq-Asp-G pkkiv FDH_SOLTU : 118- 124: knlql LltAgi-G sdhvd FDH_SOLTU : 119- 124: nlqll Lt-Agi-G sdhvd FDH_SOLTU : 130- 137: sdhvd LkaAaaaG ltvae FDH_SOLTU : 138- 145: aaaag LtvAevtG sntvs FDH_SOLTU : 343- 348: tidaq LryAa--G tkdml LDHD_LACDE : 133- 140: varhd LrwAptiG revrd LDHD_LACHE : 133- 140: makrd LrwAptiG revrd LDHD_LACPL : 231- 236: dgayi LnfAr--G tlids LDHD_LACPL : 244- 251: idsed LikAldsG kvaga PDXB_ECOLI : 77- 83: vdeaw LkqAgi-G fsaap PDXB_ECOLI : 104- 111: vfssl LmlAerdG fslyd PDXB_ECOLI : 135- 139: rlqar Le-Al--G iktll PDXB_ECOLI : 203- 209: kpgai LinAcr-G avvdn PDXB_ECOLI : 289- 296: valdt LlpApefG ritlh PDXB_ECOLI : 290- 296: aldtl Lp-ApefG ritlh SERA_BACSU : 132- 139: ideaa LleAlenG hvaga SERA_BACSU : 133- 139: deaal Le-AlenG hvaga SERA_BACSU : 191- 196: vseev LqfAk--G lpvms SERA_ECOLI : 26- 30: kales Lr-Aa--G ytnie SERA_ECOLI : 75- 79: naaek Lv-Ai--G cfcig SERA_ECOLI : 90- 97: tnqvd LdaAakrG ipvfn SERA_ECOLI : 234- 240: kpgsl LinAsr-G tvvdi SERA_HAEIN : 28- 32: saldt Lh-Aa--G ytnid SERA_HAEIN : 77- 81: eaapk Li-Av--G cfcig SERA_HAEIN : 92- 99: tnqvd LnaAkarG ipvfn SERA_HAEIN : 236- 242: kqgai LinAar-G tvvdi SERA_HAEIN : 250- 257: vdida LaqAlkdG klqga SERX_YEAST : 138- 145: tnqvd LdyAtsrG iavfn SERX_YEAST : 216- 221: sqlsv LaeAm--G lhvly SERY_YEAST : 138- 145: tnqvd LkyAaskG iavfn SERY_YEAST : 216- 221: sqlsv LaeAm--G lhvly VANH_ENTFC : 240- 247: vdtye LvkAlenG klgga YF56_HAEIN : 80- 87: tnnvd LvaAeemG iavrn YF56_HAEIN : 164- 169: tevgr LanAv--G mkvly YF56_HAEIN : 242- 249: idela LvdAlktG hlgga YIAE_ECOLI : 250- 257: vdena LiaAlqkG eihaa YIAE_ECOLI : 309- 315: cavdn LidAlq-G kvekn YPRA_CORGL : 132- 136: ktvai Lg-Ag--G igvrl YPRA_CORGL : 132- 138: ktvai Lg-AggiG vrlle YPRA_CORGL : 226- 233: intdd LvdAlnnG tiaga Q 17: 11.0102 40( 23) G-x(1,2)-V-x(2,4)-A Occurences: 40(23) DDH_HAEIN : 91- 99: aaqel GiqVvrvpA yspea DDH_ZYMMO : 237- 244: vntsr GglVdtk-A viksl DDH_ZYMMO : 238- 244: ntsrg Gl-Vdtk-A viksl DHD2_LACCA : 226- 233: nlmkp GaiVint-A rpnli DHGY_CUCSA : 75- 81: ltedw Ge-Vlfs-A lsrag DHGY_CUCSA : 165- 173: gnllk GqtVgvigA grigs DHGY_CUCSA : 274- 280: incsr Gp-Vide-A alvdh DHGY_CUCSA : 274- 281: incsr Gp-VideaA lvdhl DHGY_HYPME : 91- 97: ackar GikVgn--A phgvt DHGY_HYPME : 100- 106: gnaph GvtVat--A eiaml DHGY_HYPME : 232- 239: kslpq GaiVvnt-A rgdlv FDH_EMENI : 113- 120: vaevt GsnVvsv-A ehvvm FDH_HANPO : 116- 123: vlevt GsnVvsv-A ehvvm FDH_HANPO : 148- 155: qiisg GwnVaei-A kdsfd FDH_HANPO : 313- 318: tphys Gs-Vid--A qvrya FDH_NEUCR : 118- 125: vaevt GsnVvsv-A ehvlm FDH_PSESR : 203- 211: aagri GlaVlrrlA pfdvh FDH_SOLTU : 192- 200: aydle GktVgtvgA grigr LDHD_LACDE : 236- 243: vnvsr GplVdtd-A virgl LDHD_LACDE : 251- 257: rglds Gk-Vfgy-A mdvye LDHD_LACHE : 236- 243: vncsr GrlVdtd-A virgl LDHD_LACPL : 173- 180: gakvi GydVyrn-A eleke LDHD_LACPL : 251- 256: kalds Gk-Vag--A alvty LDHD_LACPL : 251- 257: kalds Gk-Vaga-A lvtye PDXB_ECOLI : 209- 216: inacr GavVdnt-A lltcl PDXB_ECOLI : 209- 216: inacr Ga-VvdntA lltcl SERA_BACSU : 139- 144: ealen Gh-Vag--A aldvf SERA_BACSU : 139- 145: ealen Gh-Vaga-A ldvfe SERA_BACSU : 196- 202: lqfak GlpVms--A inlpa SERA_ECOLI : 97- 103: aaakr GipVfn--A pfsnt SERA_ECOLI : 240- 247: inasr GtvVdip-A lcdal SERA_ECOLI : 240- 247: inasr Gt-VvdipA lcdal SERA_ECOLI : 376- 384: tsaqm GyvVidieA dedva SERA_HAEIN : 99- 105: aakar GipVfn--A pfsnt SERA_HAEIN : 242- 249: inaar GtvVdid-A laqal SERA_HAEIN : 242- 249: inaar Gt-VvdidA laqal SERX_YEAST : 279- 285: aamkd GayVin--A srgtv SERX_YEAST : 360- 366: aqssi GieVat--A lskyi SERY_YEAST : 279- 285: aamkd GayVin--A srgtv SERY_YEAST : 360- 366: aqssi GieVat--A lskyi VANH_ENTFC : 94- 101: aakrm GitVdnv-A yspds YF56_HAEIN : 158- 165: gkgcl GteVgrl-A navgm YF56_HAEIN : 169- 175: lanav GmkVly--A ehkda YIAE_ECOLI : 242- 249: inagr GpvVden-A liaal YIAE_ECOLI : 242- 249: inagr Gp-VvdenA liaal YPRA_CORGL : 67- 73: alvkr Gv-Vnek-A rwana YPRA_CORGL : 159- 165: avnns GrpVeg--A detfa R 18: 11.0102 53( 23) G-x(1,3)-V-x(3,4)-A Occurences: 53(23) DDH_HAEIN : 56- 65: fvndn GsrkVleklA algvk DDH_HAEIN : 68- 77: klaal GvkiValrcA gfnnv DDH_HAEIN : 78- 86: alrca GfnnVdlk-A aqelg DDH_HAEIN : 78- 87: alrca GfnnVdlkaA qelgi DDH_HAEIN : 91- 99: aaqel GiqvVrvp-A yspea DDH_HAEIN : 91- 99: aaqel Giq-VvrvpA yspea DDH_ZYMMO : 68- 77: ilagl GiklValrcA gynnv DDH_ZYMMO : 78- 86: alrca GynnVdld-A akkln DDH_ZYMMO : 78- 87: alrca GynnVdldaA kklni DDH_ZYMMO : 237- 244: vntsr Ggl-Vdtk-A viksl DDH_ZYMMO : 238- 244: ntsrg Gl--Vdtk-A viksl DHD2_LACCA : 226- 233: nlmkp Gai-Vint-A rpnli DHGY_CUCSA : 75- 81: ltedw Ge--Vlfs-A lsrag DHGY_CUCSA : 96- 104: snmav GynnVdvn-A ankyg DHGY_CUCSA : 96- 105: snmav GynnVdvnaA nkygv DHGY_CUCSA : 165- 173: gnllk Gqt-VgvigA grigs DHGY_CUCSA : 218- 227: flkan GeapVtwrrA ssmde DHGY_CUCSA : 274- 280: incsr Gp--Vide-A alvdh DHGY_CUCSA : 274- 281: incsr Gp--VideaA lvdhl DHGY_HYPME : 232- 239: kslpq Gai-Vvnt-A rgdlv FDH_EMENI : 90- 98: vtagi GsdhVdld-A anktn FDH_EMENI : 90- 99: vtagi GsdhVdldaA nktng FDH_EMENI : 113- 120: vaevt Gsn-Vvsv-A ehvvm FDH_EMENI : 144- 152: dqirn GdwnVaav-A knefd FDH_EMENI : 272- 281: vntar GaivVkedvA ealks FDH_HANPO : 116- 123: vlevt Gsn-Vvsv-A ehvvm FDH_HANPO : 147- 155: eqiis GgwnVaei-A kdsfd FDH_HANPO : 148- 155: qiisg Gwn-Vaei-A kdsfd FDH_HANPO : 258- 267: vntar GaicVaedvA aavks FDH_NEUCR : 95- 103: vtagi GsdhVdln-A anktn FDH_NEUCR : 95- 104: vtagi GsdhVdlnaA nktng FDH_NEUCR : 118- 125: vaevt Gsn-Vvsv-A ehvlm FDH_NEUCR : 149- 157: eqiqe GrwdVaea-A knefd FDH_NEUCR : 260- 269: vntar GaivVkedvA ealks FDH_PSESR : 123- 132: ltagi GsdhVdlqsA idrnv FDH_PSESR : 203- 211: aagri Gla-VlrrlA pfdvh FDH_SOLTU : 124- 132: ltagi GsdhVdlk-A aaaag FDH_SOLTU : 124- 133: ltagi GsdhVdlkaA aaagl FDH_SOLTU : 176- 184: hqvin GewnVaai-A hrayd FDH_SOLTU : 192- 200: aydle Gkt-VgtvgA grigr LDHD_LACDE : 236- 243: vnvsr Gpl-Vdtd-A virgl LDHD_LACDE : 251- 257: rglds Gk--Vfgy-A mdvye LDHD_LACHE : 236- 243: vncsr Grl-Vdtd-A virgl LDHD_LACPL : 173- 180: gakvi Gyd-Vyrn-A eleke LDHD_LACPL : 251- 257: kalds Gk--Vaga-A lvtye PDXB_ECOLI : 209- 216: inacr Gav-Vdnt-A lltcl PDXB_ECOLI : 209- 216: inacr Ga--VvdntA lltcl PDXB_ECOLI : 369- 377: llckl GfnaVhhp-A r SERA_BACSU : 139- 145: ealen Gh--Vaga-A ldvfe SERA_ECOLI : 84- 92: gcfci GtnqVdld-A aakrg SERA_ECOLI : 84- 93: gcfci GtnqVdldaA akrgi SERA_ECOLI : 240- 247: inasr Gtv-Vdip-A lcdal SERA_ECOLI : 240- 247: inasr Gt--VvdipA lcdal SERA_ECOLI : 376- 384: tsaqm Gyv-VidieA dedva SERA_HAEIN : 86- 94: gcfci GtnqVdln-A akarg SERA_HAEIN : 86- 95: gcfci GtnqVdlnaA kargi SERA_HAEIN : 242- 249: inaar Gtv-Vdid-A laqal SERA_HAEIN : 242- 249: inaar Gt--VvdidA laqal SERX_YEAST : 132- 141: gcfci GtnqVdldyA tsrgi SERY_YEAST : 132- 141: gcfci GtnqVdlkyA askgi VANH_ENTFC : 94- 101: aakrm Git-Vdnv-A yspds YF56_HAEIN : 74- 82: aitat GtnnVdlv-A aeemg YF56_HAEIN : 74- 83: aitat GtnnVdlvaA eemgi YF56_HAEIN : 158- 165: gkgcl Gte-Vgrl-A navgm YIAE_ECOLI : 240- 249: ifina GrgpVvdenA liaal YIAE_ECOLI : 242- 249: inagr Gpv-Vden-A liaal YIAE_ECOLI : 242- 249: inagr Gp--VvdenA liaal YPRA_CORGL : 67- 73: alvkr Gv--Vnek-A rwana S 19: 11.0102 58( 23) G-x(1,3)-V-x(2,3)-A Occurences: 58(23) DDH_HAEIN : 78- 86: alrca GfnnVdlkA aqelg DDH_HAEIN : 91- 99: aaqel GiqvVrvpA yspea DDH_ZYMMO : 78- 86: alrca GynnVdldA akkln DDH_ZYMMO : 237- 244: vntsr Ggl-VdtkA viksl DDH_ZYMMO : 238- 244: ntsrg Gl--VdtkA viksl DHD2_LACCA : 226- 233: nlmkp Gai-VintA rpnli DHGY_CUCSA : 75- 81: ltedw Ge--VlfsA lsrag DHGY_CUCSA : 96- 104: snmav GynnVdvnA ankyg DHGY_CUCSA : 274- 280: incsr Gp--VideA alvdh DHGY_HYPME : 91- 97: ackar Gik-Vgn-A phgvt DHGY_HYPME : 100- 106: gnaph Gvt-Vat-A eiaml DHGY_HYPME : 232- 239: kslpq GaivVnt-A rgdlv DHGY_HYPME : 232- 239: kslpq Gai-VvntA rgdlv FDH_EMENI : 90- 98: vtagi GsdhVdldA anktn FDH_EMENI : 113- 120: vaevt GsnvVsv-A ehvvm FDH_EMENI : 113- 120: vaevt Gsn-VvsvA ehvvm FDH_EMENI : 144- 152: dqirn GdwnVaavA knefd FDH_EMENI : 263- 270: lmyhk GswlVnt-A rgaiv FDH_HANPO : 116- 123: vlevt GsnvVsv-A ehvvm FDH_HANPO : 116- 123: vlevt Gsn-VvsvA ehvvm FDH_HANPO : 147- 155: eqiis GgwnVaeiA kdsfd FDH_HANPO : 148- 155: qiisg Gwn-VaeiA kdsfd FDH_HANPO : 249- 256: khfkk GawlVnt-A rgaic FDH_HANPO : 313- 318: tphys Gs--Vid-A qvrya FDH_NEUCR : 95- 103: vtagi GsdhVdlnA anktn FDH_NEUCR : 118- 125: vaevt GsnvVsv-A ehvlm FDH_NEUCR : 118- 125: vaevt Gsn-VvsvA ehvlm FDH_NEUCR : 149- 156: eqiqe GrwdVae-A aknef FDH_NEUCR : 149- 157: eqiqe GrwdVaeaA knefd FDH_NEUCR : 251- 258: skmkk GswlVnt-A rgaiv FDH_PSESR : 276- 283: klfkr GayiVnt-A rgklc FDH_SOLTU : 124- 132: ltagi GsdhVdlkA aaaag FDH_SOLTU : 145- 152: vaevt GsntVsv-A edelm FDH_SOLTU : 176- 184: hqvin GewnVaaiA hrayd FDH_SOLTU : 277- 284: aklkk GvliVnn-A rgaim LDHD_LACDE : 236- 243: vnvsr Gpl-VdtdA virgl LDHD_LACDE : 251- 257: rglds Gk--VfgyA mdvye LDHD_LACHE : 236- 243: vncsr Grl-VdtdA virgl LDHD_LACPL : 173- 180: gakvi Gyd-VyrnA eleke LDHD_LACPL : 251- 256: kalds Gk--Vag-A alvty LDHD_LACPL : 251- 257: kalds Gk--VagaA lvtye PDXB_ECOLI : 68- 75: gtata GtdhVde-A wlkqa PDXB_ECOLI : 209- 216: inacr Gav-VdntA lltcl PDXB_ECOLI : 266- 273: egkar GttqVfe-A yskfi PDXB_ECOLI : 369- 377: llckl GfnaVhhpA r SERA_BACSU : 139- 144: ealen Gh--Vag-A aldvf SERA_BACSU : 139- 145: ealen Gh--VagaA ldvfe SERA_BACSU : 196- 202: lqfak Glp-Vms-A inlpa SERA_ECOLI : 84- 92: gcfci GtnqVdldA aakrg SERA_ECOLI : 97- 103: aaakr Gip-Vfn-A pfsnt SERA_ECOLI : 240- 247: inasr Gtv-VdipA lcdal SERA_HAEIN : 86- 94: gcfci GtnqVdlnA akarg SERA_HAEIN : 99- 105: aakar Gip-Vfn-A pfsnt SERA_HAEIN : 242- 249: inaar Gtv-VdidA laqal SERX_YEAST : 279- 285: aamkd Gay-Vin-A srgtv SERX_YEAST : 360- 366: aqssi Gie-Vat-A lskyi SERY_YEAST : 279- 285: aamkd Gay-Vin-A srgtv SERY_YEAST : 360- 366: aqssi Gie-Vat-A lskyi VANH_ENTFC : 94- 101: aakrm Git-VdnvA yspds YF56_HAEIN : 74- 82: aitat GtnnVdlvA aeemg YF56_HAEIN : 158- 165: gkgcl Gte-VgrlA navgm YF56_HAEIN : 169- 175: lanav Gmk-Vly-A ehkda YIAE_ECOLI : 242- 249: inagr Gpv-VdenA liaal YPRA_CORGL : 67- 73: alvkr Gv--VnekA rwana YPRA_CORGL : 159- 165: avnns Grp-Veg-A detfa T 20: 11.0102 52( 23) A-x(1,3)-K-x(1,2)-G Occurences: 52(23) DDH_HAEIN : 221- 226: nceaf Akm-Kd-G vmivn DDH_ZYMMO : 183- 187: pdpel Ae--Kv-G frfts DDH_ZYMMO : 223- 228: ngetl Ara-Kk-G fylvn DHD2_LACCA : 86- 91: nidmt Am--KqyG irlsn DHGY_CUCSA : 104- 109: nvdvn Aan-Ky-G vavgn DHGY_CUCSA : 105- 109: vdvna An--Ky-G vavgn DHGY_HYPME : 86- 91: hidld Ac--KarG ikvgn DHGY_HYPME : 89- 95: ldack ArgiKv-G naphg FDH_EMENI : 98- 104: hvdld Aan-KtnG gitva FDH_EMENI : 99- 104: vdlda An--KtnG gitva FDH_EMENI : 281- 287: vkedv AealKs-G hlrgy FDH_EMENI : 283- 287: edvae Al--Ks-G hlrgy FDH_EMENI : 367- 372: hggdy At--KayG qrekk FDH_HANPO : 202- 207: slske Aee-Kv-G arrvh FDH_HANPO : 267- 273: vaedv AaavKs-G qlrgy FDH_HANPO : 268- 273: aedva Aav-Ks-G qlrgy FDH_HANPO : 269- 273: edvaa Av--Ks-G qlrgy FDH_HANPO : 298- 302: pwrsm An--Ky-G agnam FDH_NEUCR : 103- 109: hvdln Aan-KtnG gitva FDH_NEUCR : 104- 109: vdlna An--KtnG gitva FDH_NEUCR : 269- 275: vkedv AealKs-G hlrgy FDH_NEUCR : 271- 275: edvae Al--Ks-G hlrgy FDH_NEUCR : 355- 360: yggdy At--KsyG erera FDH_PSESR : 172- 176: pshew Ar--Kg-G wniad FDH_SOLTU : 272- 277: dkeri Akl-Kk-G vlivn LDHD_LACDE : 86- 92: dnidm Aka-KelG fqitn LDHD_LACHE : 222- 227: ndksi Aem-Kd-G vvivn LDHD_LACPL : 180- 186: dvyrn AeleKe-G myvdt PDXB_ECOLI : 75- 81: dhvde Awl-KqaG igfsa PDXB_ECOLI : 273- 279: tqvfe Ays-KfiG heqhv PDXB_ECOLI : 324- 331: vrrdd AplrKvaG ipgef SERA_BACSU : 70- 74: lteer Ak--Ki-G vnsrt SERA_BACSU : 110- 115: nketi Akt-Kk-G vrlin SERA_BACSU : 223- 227: pyhqi Ag--Ki-G slvsq SERA_ECOLI : 92- 97: qvdld Aaa-Kr-G ipvfn SERA_ECOLI : 93- 97: vdlda Aa--Kr-G ipvfn SERA_ECOLI : 148- 154: agsfe ArgkKl-G iigyg SERA_ECOLI : 148- 154: agsfe Arg-KklG iigyg SERA_HAEIN : 94- 99: qvdln Aa--KarG ipvfn SERA_HAEIN : 228- 233: nvari Aql-Kq-G ailin SERA_HAEIN : 251- 257: didal AqalKd-G klqga SERA_HAEIN : 253- 257: dalaq Al--Kd-G klqga SERX_YEAST : 274- 279: sapqf Aam-Kd-G ayvin SERX_YEAST : 275- 279: apqfa Am--Kd-G ayvin SERX_YEAST : 302- 307: iqavk An--KiaG aaldv SERY_YEAST : 274- 279: sapqf Aam-Kd-G ayvin SERY_YEAST : 275- 279: apqfa Am--Kd-G ayvin SERY_YEAST : 302- 307: iqavk An--KiaG aaldv VANH_ENTFC : 66- 71: asill Al--KraG vkyis VANH_ENTFC : 89- 94: hidtt Aa--KrmG itvdn YF56_HAEIN : 245- 249: lalvd Al--Kt-G hlgga YIAE_ECOLI : 126- 132: rvvev AervKa-G ewtas YPRA_CORGL : 62- 67: magid Alv-Kr-G vvnek Number of patterns evaluated by Pratt:2794 Total running time: 6 seconds