------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file DPS_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DPS_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DPS_ECOLI 166 MRGA_BACSU 153 NAPA_HELPY 144 TPF1_TREPA 176 TYF1_TREPE 176 YBP2_STRAU 150 YD49_HAEIN 160 YLT2_ANAVA 179 Pratt run started at Thu Feb 6 19:24:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.0203 8( 8) D-x(2)-A-E-R-x(1,3)-L-x(0,2)-G 2: 19.3503 9( 8) D-x(1,2)-A-E-R-x(1,3)-L 3: 18.8503 8( 8) A-E-R-x(1,3)-L-x(0,2)-G 4: 14.6802 8( 8) E-R-x(1,3)-L-x(0,2)-G 5: 12.5102 8( 8) H-W-x(3)-G 6: 12.0102 13( 8) E-x-L-x(4,5)-A 7: 11.5102 11( 8) A-x(3)-L-x(1,3)-L 8: 11.5102 8( 8) L-x(3,4)-A-x(2,3)-V 9: 11.0102 12( 8) D-x(2,3)-A-x(1,3)-L 10: 11.0102 11( 8) A-x(1,3)-D-x(2,3)-A 11: 11.0102 17( 8) E-x(0,1)-L-x(3,5)-A 12: 11.0102 13( 8) E-x(3,4)-L-x(3,5)-A 13: 11.0102 13( 8) E-x(0,2)-L-x(0,1)-L 14: 11.0102 12( 8) A-x(0,2)-D-x(3,4)-L 15: 11.0102 10( 8) L-x(3,4)-A-x(1,3)-V 16: 11.0102 10( 8) T-x(3,5)-L-x(2,3)-L 17: 10.5102 11( 8) E-x(0,2)-L-x(0,2)-A 18: 10.5102 8( 8) Q-x(1,3)-S-x(3,5)-L 19: 10.5102 12( 8) A-x(0,2)-D-x(2,4)-L 20: 10.5102 17( 8) A-x(1,3)-E-x(3,5)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 35.2908 8( 8) D-[ADET]-[ILMV]-A-E-R-x(1,3)-L-x(0,2)-G-x(2)-[AP]-x-[AGNV]-[ADST] B 2: 27.7485 8( 8) H-W-x-[IMV]-x-G-x(4)-[ANQST]-[LV]-H-x(3)-[DE] C 3: 26.5089 8( 8) A-E-R-x(1,3)-L-x(0,2)-G-x(2)-[AP]-x-[AGNV]-[ADST] D 4: 24.2199 9( 8) D-x(1,2)-A-E-R-x(1,3)-L-[AGQT]-x(2)-[AGP] E 5: 22.3388 8( 8) E-R-x(1,3)-L-x(0,2)-G-x(2)-[AP]-x-[AGNV]-[ADST] F 6: 15.8230 9( 8) A-x(1,3)-D-x(2,3)-A-x(2)-[ILM]-x-[ADGQT] G 7: 13.3878 9( 8) A-[DEQST]-x(2)-L-x(1,3)-L H 8: 13.2469 10( 8) D-x(2,3)-A-x(1,3)-L-[AEQT] I 9: 13.2236 11( 8) E-x(0,1)-L-x(3,5)-A-x(2)-[AEGT] J 10: 12.0102 13( 8) E-x-L-x(4,5)-A K 11: 11.5102 8( 8) L-x(3,4)-A-x(2,3)-V L 12: 11.0102 13( 8) E-x(3,4)-L-x(3,5)-A M 13: 11.0102 13( 8) E-x(0,2)-L-x(0,1)-L N 14: 11.0102 12( 8) A-x(0,2)-D-x(3,4)-L O 15: 11.0102 10( 8) L-x(3,4)-A-x(1,3)-V P 16: 11.0102 10( 8) T-x(3,5)-L-x(2,3)-L Q 17: 10.5102 11( 8) E-x(0,2)-L-x(0,2)-A R 18: 10.5102 8( 8) Q-x(1,3)-S-x(3,5)-L S 19: 10.5102 12( 8) A-x(0,2)-D-x(2,4)-L T 20: 10.5102 17( 8) A-x(1,3)-E-x(3,5)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 35.2908 8( 8) D-[ADET]-[ILMV]-A-E-R-x(1,3)-L-x(0,2)-G-x(2)-[AP]-x-[AGNV]-[ADST] Occurences: 8(8) DPS_ECOLI : 77- 93: lidhl DTMAERavqL--GgvAlGT tqvin MRGA_BACSU : 62- 78: aaetv DTIAERl--LaiGgqPvAT vkeyt NAPA_HELPY : 52- 68: fadmf DDLAERlvqL--GhhPlVT lseal TPF1_TREPA : 83- 99: vteaf DTIAERllqL--GaqApAS maeyl TPF1_TREPA : 83- 99: vteaf DTIAERl--LqlGaqApAS maeyl TYF1_TREPE : 83- 99: vteaf DTIAERllqL--GaqApAS maeyl TYF1_TREPE : 83- 99: vteaf DTIAERl--LqlGaqApAS maeyl YBP2_STRAU : 84- 100: qlelv DALAERvqtL--GgvAvGD prhaa YD49_HAEIN : 65- 81: lvarv DEVAERiltL--GytPnNA ysqyl YD49_HAEIN : 65- 81: lvarv DEVAERi--LtlGytPnNA ysqyl YLT2_ANAVA : 65- 81: lteni DAIAERvrtL--GgyPiGS megfl B 2: 27.7485 8( 8) H-W-x-[IMV]-x-G-x(4)-[ANQST]-[LV]-H-x(3)-[DE] Occurences: 8(8) DPS_ECOLI : 50- 66: itkqa HWnMrGanfiAVHemlD gfrta MRGA_BACSU : 35- 51: klhrf HWyVkGphffTLHekfE elydh NAPA_HELPY : 25- 41: kvhnf HWnVkGtdffNVHkatE eiyee TPF1_TREPA : 56- 72: klhny HWhIyGiefkQVHellE eyyvs TYF1_TREPE : 56- 72: klhny HWhIyGiefkQVHellE eyyvs YBP2_STRAU : 57- 73: lykkc HWgMrGptayQLHllfD khaqe YD49_HAEIN : 38- 54: nvrgy HWnIkGvnffALHakfE eiytn YLT2_ANAVA : 38- 54: ktkky HWdVvGpqfrSLHqlwE ehyek C 3: 26.5089 8( 8) A-E-R-x(1,3)-L-x(0,2)-G-x(2)-[AP]-x-[AGNV]-[ADST] Occurences: 8(8) DPS_ECOLI : 80- 93: hldtm AERavqL--GgvAlGT tqvin MRGA_BACSU : 65- 78: tvdti AERl--LaiGgqPvAT vkeyt NAPA_HELPY : 55- 68: mfddl AERlvqL--GhhPlVT lseal TPF1_TREPA : 86- 99: afdti AERllqL--GaqApAS maeyl TPF1_TREPA : 86- 99: afdti AERl--LqlGaqApAS maeyl TYF1_TREPE : 86- 99: afdti AERllqL--GaqApAS maeyl TYF1_TREPE : 86- 99: afdti AERl--LqlGaqApAS maeyl YBP2_STRAU : 87- 100: lvdal AERvqtL--GgvAvGD prhaa YD49_HAEIN : 68- 81: rvdev AERiltL--GytPnNA ysqyl YD49_HAEIN : 68- 81: rvdev AERi--LtlGytPnNA ysqyl YLT2_ANAVA : 68- 81: nidai AERvrtL--GgyPiGS megfl D 4: 24.2199 9( 8) D-x(1,2)-A-E-R-x(1,3)-L-[AGQT]-x(2)-[AGP] Occurences: 9(8) DPS_ECOLI : 77- 90: lidhl DtmAERavqLGgvA lgttq MRGA_BACSU : 62- 73: aaetv DtiAERl--LAigG qpvat NAPA_HELPY : 52- 65: fadmf DdlAERlvqLGhhP lvtls NAPA_HELPY : 53- 65: admfd Dl-AERlvqLGhhP lvtls TPF1_TREPA : 83- 94: vteaf DtiAERl--LQlgA qapas TPF1_TREPA : 83- 96: vteaf DtiAERllqLGaqA pasma TYF1_TREPE : 83- 94: vteaf DtiAERl--LQlgA qapas TYF1_TREPE : 83- 96: vteaf DtiAERllqLGaqA pasma YBP2_STRAU : 84- 97: qlelv DalAERvqtLGgvA vgdpr YD49_HAEIN : 65- 78: lvarv DevAERiltLGytP nnays YLT2_ANAVA : 65- 78: lteni DaiAERvrtLGgyP igsme E 5: 22.3388 8( 8) E-R-x(1,3)-L-x(0,2)-G-x(2)-[AP]-x-[AGNV]-[ADST] Occurences: 8(8) DPS_ECOLI : 81- 93: ldtma ERavqL--GgvAlGT tqvin MRGA_BACSU : 66- 78: vdtia ERl--LaiGgqPvAT vkeyt NAPA_HELPY : 56- 68: fddla ERlvqL--GhhPlVT lseal TPF1_TREPA : 87- 99: fdtia ERllqL--GaqApAS maeyl TPF1_TREPA : 87- 99: fdtia ERl--LqlGaqApAS maeyl TYF1_TREPE : 87- 99: fdtia ERllqL--GaqApAS maeyl TYF1_TREPE : 87- 99: fdtia ERl--LqlGaqApAS maeyl YBP2_STRAU : 88- 100: vdala ERvqtL--GgvAvGD prhaa YD49_HAEIN : 69- 81: vdeva ERiltL--GytPnNA ysqyl YD49_HAEIN : 69- 81: vdeva ERi--LtlGytPnNA ysqyl YLT2_ANAVA : 69- 81: idaia ERvrtL--GgyPiGS megfl F 6: 15.8230 9( 8) A-x(1,3)-D-x(2,3)-A-x(2)-[ILM]-x-[ADGQT] Occurences: 9(8) DPS_ECOLI : 138- 149: kaige Akd-Ddt-AdiLtA asrdl DPS_ECOLI : 138- 149: kaige Ak--DddtAdiLtA asrdl MRGA_BACSU : 58- 70: lydha AetvDti-AerLlA iggqp NAPA_HELPY : 48- 60: iyeef AdmfDdl-AerLvQ lghhp TPF1_TREPA : 81- 91: vsvte Af--Dti-AerLlQ lgaqa TYF1_TREPE : 81- 91: vsvte Af--Dti-AerLlQ lgaqa YBP2_STRAU : 97- 109: tlggv Avg-DprhAarItG vprpp YD49_HAEIN : 62- 73: ytnlv Arv-Dev-AerIlT lgytp YD49_HAEIN : 128- 139: afann An--DegtAsqMsD yikeq YLT2_ANAVA : 95- 106: tlkeh Ag--DvpsAtgMvA nlvqd G 7: 13.3878 9( 8) A-[DEQST]-x(2)-L-x(1,3)-L Occurences: 9(8) DPS_ECOLI : 150- 158: dilta ASrdLdkfL wfies MRGA_BACSU : 129- 137: enqdn ATadLfvgL ieeve NAPA_HELPY : 125- 132: vtvty ADdqLak-L qksiw TPF1_TREPA : 86- 92: afdti AErlLq--L gaqap TYF1_TREPE : 86- 92: afdti AErlLq--L gaqap YBP2_STRAU : 76- 82: lfdkh AQeqLe--L vdala YD49_HAEIN : 68- 74: rvdev AEriLt--L gytpn YD49_HAEIN : 100- 108: iavse AQecLsgtL qglkt YLT2_ANAVA : 25- 31: lnqdl ADsyLl--L vktkk H 8: 13.2469 10( 8) D-x(2,3)-A-x(1,3)-L-[AEQT] Occurences: 10(8) DPS_ECOLI : 140- 148: igeak DddtAdi-LT aasrd DPS_ECOLI : 141- 148: geakd Ddt-Adi-LT aasrd MRGA_BACSU : 62- 70: aaetv Dti-AerlLA iggqp NAPA_HELPY : 126- 133: tvtya DdqlAk--LQ ksiwm NAPA_HELPY : 127- 133: vtyad Dql-Ak--LQ ksiwm TPF1_TREPA : 83- 91: vteaf Dti-AerlLQ lgaqa TYF1_TREPE : 83- 91: vteaf Dti-AerlLQ lgaqa YBP2_STRAU : 73- 81: lhllf Dkh-AqeqLE lvdal YD49_HAEIN : 65- 73: lvarv Dev-AeriLT lgytp YLT2_ANAVA : 132- 140: gdefq DqgtAdf-LT glmee I 9: 13.2236 11( 8) E-x(0,1)-L-x(3,5)-A-x(2)-[AEGT] Occurences: 11(8) DPS_ECOLI : 119- 128: qdhlk E-Ladry-AivA ndvrk MRGA_BACSU : 51- 60: lhekf EeLydh--AaeT vdtia MRGA_BACSU : 52- 60: hekfe E-Lydh--AaeT vdtia NAPA_HELPY : 108- 116: ekefk E-Lsnt--AekE gdkvt TPF1_TREPA : 36- 46: iaaic EqLrqhv-AdlG vlyik TPF1_TREPA : 102- 113: pasma EyLalsgiAeeT ekeit TYF1_TREPE : 36- 46: iaaic EqLrrhv-AdlG vlyik TYF1_TREPE : 102- 113: pasma EyLalsgiAeeT ekeit YBP2_STRAU : 78- 88: dkhaq EqLelvd-AlaE rvqtl YD49_HAEIN : 120- 131: ldqqr EiLafannAndE gtasq YLT2_ANAVA : 58- 69: weehy EkLtenidAiaE rvrtl J 10: 12.0102 13( 8) E-x-L-x(4,5)-A Occurences: 13(8) DPS_ECOLI : 63- 71: fiavh EmLdgfrtA lidhl MRGA_BACSU : 51- 58: lhekf EeLydha-A etvdt NAPA_HELPY : 5- 12: mktf EiLkhlq-A daivl TPF1_TREPA : 36- 43: iaaic EqLrqhv-A dlgvl TPF1_TREPA : 87- 94: fdtia ErLlqlg-A qapas TPF1_TREPA : 102- 110: pasma EyLalsgiA eetek TYF1_TREPE : 36- 43: iaaic EqLrrhv-A dlgvl TYF1_TREPE : 87- 94: fdtia ErLlqlg-A qapas TYF1_TREPE : 102- 110: pasma EyLalsgiA eetek YBP2_STRAU : 78- 85: dkhaq EqLelvd-A laerv YD49_HAEIN : 120- 128: ldqqr EiLafannA ndegt YD49_HAEIN : 145- 153: yikeq EkLvwmfqA acqtc YLT2_ANAVA : 58- 66: weehy EkLtenidA iaerv K 11: 11.5102 8( 8) L-x(3,4)-A-x(2,3)-V Occurences: 8(8) DPS_ECOLI : 76- 84: alidh Ldtm-AeraV qlggv MRGA_BACSU : 53- 61: ekfee LydhaAet-V dtiae MRGA_BACSU : 53- 61: ekfee Lydh-AaetV dtiae NAPA_HELPY : 7- 16: ktfei LkhlqAdaiV lfmkv TPF1_TREPA : 38- 47: aiceq LrqhvAdlgV lyikl TYF1_TREPE : 38- 47: aiceq LrrhvAdlgV lyikl YBP2_STRAU : 82- 90: qeqle LvdalAer-V qtlgg YD49_HAEIN : 20- 29: eladk LnellAtyqV fytnv YLT2_ANAVA : 91- 98: lqlat Lkeh-Agd-V psatg L 12: 11.0102 13( 8) E-x(3,4)-L-x(3,5)-A Occurences: 13(8) DPS_ECOLI : 81- 90: ldtma EravqLggv--A lgttq MRGA_BACSU : 48- 57: fftlh EkfeeLydh--A aetvd MRGA_BACSU : 48- 58: fftlh EkfeeLydha-A etvdt NAPA_HELPY : 5- 14: mktf EilkhLqad--A ivlfm NAPA_HELPY : 105- 113: khlek Efke-Lsnt--A ekegd TPF1_TREPA : 87- 96: fdtia ErllqLgaq--A pasma TPF1_TREPA : 87- 98: fdtia ErllqLgaqapA smaey TPF1_TREPA : 102- 110: pasma Eyla-Lsgi--A eetek TYF1_TREPE : 87- 96: fdtia ErllqLgaq--A pasma TYF1_TREPE : 87- 98: fdtia ErllqLgaqapA smaey TYF1_TREPE : 102- 110: pasma Eyla-Lsgi--A eetek YBP2_STRAU : 78- 87: dkhaq Eqle-Lvdal-A ervqt YBP2_STRAU : 88- 97: vdala ErvqtLggv--A vgdpr YD49_HAEIN : 15- 25: kvqsa EladkLnell-A tyqvf YD49_HAEIN : 143- 153: sdyik Eqek-LvwmfqA acqtc YLT2_ANAVA : 55- 66: hqlwe EhyekLtenidA iaerv M 13: 11.0102 13( 8) E-x(0,2)-L-x(0,1)-L Occurences: 13(8) DPS_ECOLI : 30- 32: kkatv E--L-L nrqvi MRGA_BACSU : 66- 69: vdtia Er-L-L aiggq NAPA_HELPY : 71- 75: lvtls Ea-LkL trvkd TPF1_TREPA : 69- 71: fkqvh E--L-L eeyyv TPF1_TREPA : 87- 90: fdtia Er-L-L qlgaq TPF1_TREPA : 87- 92: fdtia ErlLqL gaqap TPF1_TREPA : 102- 106: pasma Ey-LaL sgiae TYF1_TREPE : 69- 71: fkqvh E--L-L eeyyv TYF1_TREPE : 87- 90: fdtia Er-L-L qlgaq TYF1_TREPE : 87- 92: fdtia ErlLqL gaqap TYF1_TREPE : 102- 106: pasma Ey-LaL sgiae YBP2_STRAU : 78- 82: dkhaq Eq-LeL vdala YD49_HAEIN : 22- 24: adkln E--L-L atyqv YD49_HAEIN : 69- 74: vdeva EriLtL gytpn YLT2_ANAVA : 83- 88: pigsm EgfLqL atlke N 14: 11.0102 12( 8) A-x(0,2)-D-x(3,4)-L Occurences: 12(8) DPS_ECOLI : 150- 158: dilta AsrDldkfL wfies MRGA_BACSU : 129- 137: enqdn AtaDlfvgL ieeve MRGA_BACSU : 131- 137: qdnat A--DlfvgL ieeve NAPA_HELPY : 12- 17: lkhlq A--Daiv-L fmkvh NAPA_HELPY : 48- 54: iyeef A--DmfddL aerlv NAPA_HELPY : 125- 132: vtvty Ad-DqlakL qksiw TPF1_TREPA : 43- 48: lrqhv A--Dlgv-L yiklh TYF1_TREPE : 43- 48: lrrhv A--Dlgv-L yiklh YBP2_STRAU : 44- 49: lnrvl A--Dtqf-L yalyk YD49_HAEIN : 17- 23: qsael A--DklneL latyq YLT2_ANAVA : 25- 30: lnqdl A--Dsyl-L lvktk YLT2_ANAVA : 25- 31: lnqdl A--DsyllL vktkk YLT2_ANAVA : 136- 142: qdqgt A--DfltgL meehe O 15: 11.0102 10( 8) L-x(3,4)-A-x(1,3)-V Occurences: 10(8) DPS_ECOLI : 76- 84: alidh Ldtm-AeraV qlggv DPS_ECOLI : 120- 127: dhlke LadryAi--V andvr MRGA_BACSU : 53- 61: ekfee LydhaAet-V dtiae MRGA_BACSU : 53- 61: ekfee Lydh-AaetV dtiae NAPA_HELPY : 7- 16: ktfei LkhlqAdaiV lfmkv NAPA_HELPY : 10- 16: eilkh Lqad-Ai--V lfmkv TPF1_TREPA : 38- 47: aiceq LrqhvAdlgV lyikl TYF1_TREPE : 38- 47: aiceq LrrhvAdlgV lyikl YBP2_STRAU : 82- 90: qeqle LvdalAer-V qtlgg YD49_HAEIN : 20- 29: eladk LnellAtyqV fytnv YLT2_ANAVA : 91- 98: lqlat Lkeh-Agd-V psatg P 16: 11.0102 10( 8) T-x(3,5)-L-x(2,3)-L Occurences: 10(8) DPS_ECOLI : 148- 158: tadil TaasrdLdkfL wfies MRGA_BACSU : 11- 21: aktnq TlvensLntqL snwfl NAPA_HELPY : 3- 10: mk Tfei--Lkh-L qadai NAPA_HELPY : 123- 132: dkvtv TyaddqLak-L qksiw TPF1_TREPA : 84- 92: teafd Tiaer-Llq-L gaqap TYF1_TREPE : 84- 92: teafd Tiaer-Llq-L gaqap YBP2_STRAU : 19- 27: iqefg Tvtq--LpiaL shdar YBP2_STRAU : 64- 71: gmrgp Tayq--Lhl-L fdkha YD49_HAEIN : 107- 114: eclsg Tlqg--Lkt-L ldqqr YD49_HAEIN : 107- 115: eclsg Tlqg--LktlL dqqre YLT2_ANAVA : 135- 142: fqdqg Tadf--Ltg-L meehe Q 17: 10.5102 11( 8) E-x(0,2)-L-x(0,2)-A Occurences: 11(8) DPS_ECOLI : 119- 121: qdhlk E--L--A dryai MRGA_BACSU : 66- 70: vdtia ErlL--A iggqp MRGA_BACSU : 66- 70: vdtia Er-Ll-A iggqp NAPA_HELPY : 140- 144: siwml EahL--A TPF1_TREPA : 102- 105: pasma Ey-L--A lsgia TYF1_TREPE : 102- 105: pasma Ey-L--A lsgia YBP2_STRAU : 81- 85: aqeql E--LvdA laerv YBP2_STRAU : 132- 136: lldah EtiL--A dvrda YD49_HAEIN : 15- 17: kvqsa E--L--A dklne YD49_HAEIN : 22- 25: adkln El-L--A tyqvf YD49_HAEIN : 22- 25: adkln E--Ll-A tyqvf YD49_HAEIN : 120- 123: ldqqr Ei-L--A fanna YD49_HAEIN : 120- 125: ldqqr Ei-LafA nnand YLT2_ANAVA : 83- 89: pigsm EgfLqlA tlkeh R 18: 10.5102 8( 8) Q-x(1,3)-S-x(3,5)-L Occurences: 8(8) DPS_ECOLI : 95- 103: algtt QvinSktp--L ksypl MRGA_BACSU : 20- 26: nslnt Ql--Snwf--L lyskl MRGA_BACSU : 20- 27: nslnt Ql--Snwfl-L ysklh NAPA_HELPY : 133- 139: qlakl Qk--Siwm--L eahla TPF1_TREPA : 95- 104: lqlga QapaSmaey-L alsgi TYF1_TREPE : 95- 104: lqlga QapaSmaey-L alsgi YBP2_STRAU : 33- 39: shdar Qy--Scqr--L nrvla YD49_HAEIN : 101- 111: avsea QeclSgtlqgL ktlld YLT2_ANAVA : 45- 52: dvvgp Qfr-Slhq--L weehy S 19: 10.5102 12( 8) A-x(0,2)-D-x(2,4)-L Occurences: 12(8) DPS_ECOLI : 150- 158: dilta AsrDldkfL wfies MRGA_BACSU : 129- 137: enqdn AtaDlfvgL ieeve MRGA_BACSU : 131- 137: qdnat A--DlfvgL ieeve NAPA_HELPY : 12- 17: lkhlq A--Daiv-L fmkvh NAPA_HELPY : 48- 54: iyeef A--DmfddL aerlv NAPA_HELPY : 125- 129: vtvty A--Ddq--L aklqk NAPA_HELPY : 125- 132: vtvty Ad-DqlakL qksiw TPF1_TREPA : 43- 48: lrqhv A--Dlgv-L yiklh TYF1_TREPE : 43- 48: lrrhv A--Dlgv-L yiklh YBP2_STRAU : 44- 49: lnrvl A--Dtqf-L yalyk YD49_HAEIN : 17- 23: qsael A--DklneL latyq YLT2_ANAVA : 25- 29: lnqdl A--Dsy--L llvkt YLT2_ANAVA : 25- 30: lnqdl A--Dsyl-L lvktk YLT2_ANAVA : 25- 31: lnqdl A--DsyllL vktkk YLT2_ANAVA : 136- 142: qdqgt A--DfltgL meehe T 20: 10.5102 17( 8) A-x(1,3)-E-x(3,5)-V Occurences: 17(8) DPS_ECOLI : 27- 36: dsekk Atv-EllnrqV iqfid MRGA_BACSU : 97- 105: gnets As--EmvqalV ndykq NAPA_HELPY : 113- 120: elsnt Aek-Egdk--V tvtya NAPA_HELPY : 113- 122: elsnt Aek-EgdkvtV tyadd TPF1_TREPA : 32- 42: darai AaicEqlrqhV adlgv TPF1_TREPA : 33- 42: araia Aic-EqlrqhV adlgv TPF1_TREPA : 110- 120: alsgi AeetEkeitiV salar TPF1_TREPA : 144- 151: qtqvl Aa--Esgda-V tdgii TYF1_TREPE : 32- 42: darai AaicEqlrrhV adlgv TYF1_TREPE : 33- 42: araia Aic-EqlrrhV adlgv TYF1_TREPE : 110- 120: alsgi AeetEkeitiV salar TYF1_TREPE : 144- 151: qtqvl Aa--Esgda-V tdgii YBP2_STRAU : 12- 20: lhqha AeiqEfgt--V tqlpi YBP2_STRAU : 76- 83: lfdkh Aq--Eqlel-V dalae YBP2_STRAU : 130- 138: srlld Ah--EtiladV rdaat YD49_HAEIN : 51- 61: ffalh AkfeEiytnlV arvde YLT2_ANAVA : 89- 98: gflql AtlkEhagd-V psatg YLT2_ANAVA : 170- 177: ngtqp At--Etktp-V gv Number of patterns evaluated by Pratt:760 Total running time: 1 seconds