------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file DNA_POLYMERASE_X PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DNA_POLYMERASE_X.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DPO4_YEAST 581 DPOB_HUMAN 334 DPOB_RAT 334 O174_ASFB7 174 TDT_BOVIN 520 TDT_CHICK 506 TDT_HUMAN 508 TDT_MOUSE 529 TDT_XENLA 507 YA26_SCHPO 506 Pratt run started at Thu Feb 6 19:24:10 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 10( 10) I-x(5)-L-x(2,3)-E-x(3,4)-N 2: 12.5102 10( 10) Y-x(2)-P-x(2)-R 3: 12.5102 12( 10) V-x(2)-K-x(3)-K 4: 12.0102 10( 10) L-x(1,2)-T-x(4)-K 5: 12.0102 13( 10) I-x(5)-L-x(2,3)-E 6: 12.0102 13( 10) V-x(2)-K-x(3,4)-K 7: 12.0102 13( 10) L-x(3)-K-x(3,4)-E 8: 12.0102 18( 10) L-x(0,1)-E-x-K 9: 12.0102 12( 10) L-x(5)-E-x(0,1)-E 10: 12.0102 11( 10) K-x(3,4)-R-x(3)-L 11: 12.0102 16( 10) L-x(4,5)-I-x(4)-F 12: 12.0102 15( 10) E-x(4,5)-K-x-V 13: 12.0102 11( 10) I-x(3)-E-x(3,4)-K 14: 12.0102 12( 10) L-L-x(4,5)-E 15: 12.0102 14( 10) L-x(5)-E-x(3,4)-K 16: 12.0102 10( 10) L-x(3)-E-x(3,4)-N 17: 12.0102 11( 10) G-x-L-x(2,3)-E 18: 12.0102 16( 10) G-x(2,3)-R-R 19: 12.0102 16( 10) R-x(3,4)-E-x(4)-L 20: 12.0102 14( 10) K-x(0,1)-I-x(3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 18.0383 10( 10) E-x(4,5)-K-x-V-x(2)-[ADGNT]-x(4)-[DGNPS]-x(4)-[APTV] B 2: 17.9194 10( 10) I-x(4)-[DGNS]-L-x(2,3)-E-x(3,4)-N C 3: 16.1023 11( 10) I-x(4)-[DGNSV]-L-x(2,3)-E-[DEPS] D 4: 14.6414 10( 10) G-x-L-x(2,3)-E-[DEK] E 5: 14.2508 12( 10) L-x(4)-[ADEN]-E-x(0,1)-E F 6: 14.2335 10( 10) L-[DEKR]-x(2)-E-x(3,4)-N G 7: 13.6624 13( 10) L-x(5)-E-x(3,4)-K-x(4)-[DGNQST] H 8: 12.5102 10( 10) Y-x(2)-P-x(2)-R I 9: 12.5102 12( 10) V-x(2)-K-x(3)-K J 10: 12.0102 10( 10) L-x(1,2)-T-x(4)-K K 11: 12.0102 13( 10) V-x(2)-K-x(3,4)-K L 12: 12.0102 13( 10) L-x(3)-K-x(3,4)-E M 13: 12.0102 18( 10) L-x(0,1)-E-x-K N 14: 12.0102 11( 10) K-x(3,4)-R-x(3)-L O 15: 12.0102 16( 10) L-x(4,5)-I-x(4)-F P 16: 12.0102 11( 10) I-x(3)-E-x(3,4)-K Q 17: 12.0102 12( 10) L-L-x(4,5)-E R 18: 12.0102 16( 10) G-x(2,3)-R-R S 19: 12.0102 16( 10) R-x(3,4)-E-x(4)-L T 20: 12.0102 14( 10) K-x(0,1)-I-x(3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 18.0383 10( 10) E-x(4,5)-K-x-V-x(2)-[ADGNT]-x(4)-[DGNPS]-x(4)-[APTV] Occurences: 10(10) DPO4_YEAST : 330- 351: kmsrn EcfthlKkVqkAlrgiDpecqV elqgs DPOB_HUMAN : 20- 41: tdmlt ElanfeKnVsqAihkyNayrkA asvia DPOB_RAT : 20- 41: tdmlv ElanfeKnVsqAihkyNayrkA asvia O174_ASFB7 : 58- 78: liivp Ekkll-KhVlpNirikGlsfsV kvcge TDT_BOVIN : 244- 264: iiedg Essev-KaVlnDeryqSfklfT svfgv TDT_CHICK : 233- 253: iieeg Essra-KdVlnDerykSfkefT svfgv TDT_HUMAN : 233- 253: iiedg Essev-KaVlnDeryqSfklfT svfgv TDT_MOUSE : 233- 253: iiedg Essea-KaVlnDerykSfklfT svfgv TDT_XENLA : 421- 441: dphec Erknw-KaVrlDlvitPyeqyP yallg YA26_SCHPO : 22- 42: snsqy Edars-KiVnfGgeftNdaakA dyifv B 2: 17.9194 10( 10) I-x(4)-[DGNS]-L-x(2,3)-E-x(3,4)-N Occurences: 10(10) DPO4_YEAST : 558- 573: fnerr IfellNLkyaEpehrN iewek DPOB_HUMAN : 118- 132: fvdeg IktleDLrknEdkl-N hhqri DPOB_RAT : 118- 132: lvdeg IktleDLrknEdkl-N hhqri O174_ASFB7 : 34- 48: ilskn IvavgSLrreEkml-N dvdll O174_ASFB7 : 34- 48: ilskn IvavgSLrr-EekmlN dvdll TDT_BOVIN : 504- 519: eseee IfahlGLdyiEpwerN a TDT_CHICK : 490- 505: gseee IfahlGLdyvEpwerN a TDT_HUMAN : 492- 507: eseee IfahlGLdyiEpwerN a TDT_MOUSE : 513- 528: eseee IfahlGLdyiEpwerN a TDT_XENLA : 491- 506: nneed IfkqlGLdylEpwerN a YA26_SCHPO : 489- 504: eaekd IfryfSLeyiEpkfrN tg C 3: 16.1023 11( 10) I-x(4)-[DGNSV]-L-x(2,3)-E-[DEPS] Occurences: 11(10) DPO4_YEAST : 283- 294: gigse IakrwNLlnfES fcvaa DPO4_YEAST : 558- 569: fnerr IfellNLkyaEP ehrni DPOB_HUMAN : 118- 129: fvdeg IktleDLrknED klnhh DPOB_RAT : 118- 129: lvdeg IktleDLrknED klnhh O174_ASFB7 : 34- 44: ilskn IvavgSLrr-EE kmlnd TDT_BOVIN : 504- 515: eseee IfahlGLdyiEP werna TDT_CHICK : 490- 501: gseee IfahlGLdyvEP werna TDT_HUMAN : 492- 503: eseee IfahlGLdyiEP werna TDT_MOUSE : 513- 524: eseee IfahlGLdyiEP werna TDT_XENLA : 491- 502: nneed IfkqlGLdylEP werna YA26_SCHPO : 489- 500: eaekd IfryfSLeyiEP kfrnt D 4: 14.6414 10( 10) G-x-L-x(2,3)-E-[DEK] Occurences: 10(10) DPO4_YEAST : 466- 472: mknde GtLli-EE eeeee DPO4_YEAST : 466- 473: mknde GtLlieEE eeeet DPOB_HUMAN : 79- 86: eflat GkLrklEK irqdd DPOB_RAT : 79- 86: eflat GkLrklEK irqdd O174_ASFB7 : 38- 44: nivav GsLrr-EE kmlnd O174_ASFB7 : 38- 45: nivav GsLrreEK mlndv TDT_BOVIN : 303- 309: kmqka GfLyy-ED lvscv TDT_CHICK : 292- 298: kmqra GfLyy-ED lvscv TDT_HUMAN : 292- 298: rmqka GfLyy-ED lvscv TDT_MOUSE : 292- 298: qmqka GfLyy-ED lvscv TDT_XENLA : 288- 294: kmqkc GlLyy-ED itsyv YA26_SCHPO : 246- 253: efast GtLkeaEE fqkdp E 5: 14.2508 12( 10) L-x(4)-[ADEN]-E-x(0,1)-E Occurences: 12(10) DPO4_YEAST : 468- 475: ndegt LlieeEE-E eetkl DPO4_YEAST : 468- 476: ndegt LlieeEEeE etkln DPO4_YEAST : 469- 476: degtl LieeeEE-E etkln DPO4_YEAST : 469- 477: degtl LieeeEEeE tklnp DPO4_YEAST : 562- 570: rifel LnlkyAEpE hrnie DPOB_HUMAN : 240- 248: mgvcq LpsknDEkE yphrr DPOB_RAT : 240- 248: mgvcq LpsenDEnE yphrr O174_ASFB7 : 101- 108: tyqld LftalAE-E kpyai TDT_BOVIN : 496- 503: tkrvf LkaesEE-E ifahl TDT_CHICK : 482- 489: rkrvf LkagsEE-E ifahl TDT_HUMAN : 484- 491: tkrif LkaesEE-E ifahl TDT_MOUSE : 505- 512: alrvf LeaesEE-E ifahl TDT_XENLA : 270- 278: mgfrt LeeikNEkE lkltk YA26_SCHPO : 375- 382: hlvdv LlrilDE-E fqfrl F 6: 14.2335 10( 10) L-[DEKR]-x(2)-E-x(3,4)-N Occurences: 10(10) DPO4_YEAST : 564- 573: felln LKyaEpehrN iewek DPOB_HUMAN : 124- 132: ktled LRknEdkl-N hhqri DPOB_RAT : 124- 132: ktled LRknEdkl-N hhqri O174_ASFB7 : 40- 48: vavgs LRreEkml-N dvdll TDT_BOVIN : 510- 519: fahlg LDyiEpwerN a TDT_CHICK : 496- 505: fahlg LDyvEpwerN a TDT_HUMAN : 498- 507: fahlg LDyiEpwerN a TDT_MOUSE : 519- 528: fahlg LDyiEpwerN a TDT_XENLA : 497- 506: fkqlg LDylEpwerN a YA26_SCHPO : 495- 504: fryfs LEyiEpkfrN tg G 7: 13.6624 13( 10) L-x(5)-E-x(3,4)-K-x(4)-[DGNQST] Occurences: 13(10) DPO4_YEAST : 468- 484: ndegt LlieeeEeeetKlnpiD qymsl DPO4_YEAST : 469- 484: degtl LieeeeEeet-KlnpiD qymsl DPOB_HUMAN : 209- 224: tkqpk LlhqvvEqlq-KvhfiT dtlsk DPOB_RAT : 209- 224: skqpk LlhrvvEqlq-KvrfiT dtlsk O174_ASFB7 : 52- 68: lndvd LliivpEkkllKhvlpN irikg TDT_BOVIN : 386- 402: kkgll LyydlvEstfeKfklpS rqvdt TDT_CHICK : 366- 382: hkgll LycdiiEstfvKeqipS rhvda TDT_HUMAN : 375- 391: kkgll LyydlvEstfeKlrlpS rkvda TDT_MOUSE : 376- 392: qqgll LycdilEstfeKfkqpS rkvda TDT_XENLA : 270- 285: mgfrt LeeiknEkel-KltkmQ kcgll TDT_XENLA : 483- 498: tknnf LkanneEdif-KqlglD ylepw YA26_SCHPO : 16- 32: vlhnr LsnsqyEdarsKivnfG geftn YA26_SCHPO : 217- 232: ikafp LpidsaEqle-KmpgcG pkivh H 8: 12.5102 10( 10) Y-x(2)-P-x(2)-R Occurences: 10(10) DPO4_YEAST : 566- 572: llnlk YaePehR niewe DPOB_HUMAN : 326- 332: yiqwk YrePkdR se DPOB_RAT : 326- 332: yiqwr YrePkdR se O174_ASFB7 : 167- 173: elgft YriPkkR l TDT_BOVIN : 512- 518: hlgld YiePweR na TDT_CHICK : 498- 504: hlgld YvePweR na TDT_HUMAN : 500- 506: hlgld YiePweR na TDT_MOUSE : 521- 527: hlgld YiePweR na TDT_XENLA : 499- 505: qlgld YlePweR na YA26_SCHPO : 497- 503: yfsle YiePkfR ntg I 9: 12.5102 12( 10) V-x(2)-K-x(3)-K Occurences: 12(10) DPO4_YEAST : 178- 185: grasl VtdKtkyK nneli DPOB_HUMAN : 44- 51: rkaas ViaKyphK iksga DPOB_HUMAN : 64- 71: kklpg VgtKiaeK idefl DPOB_RAT : 44- 51: rkaas ViaKyphK iksga DPOB_RAT : 64- 71: kklpg VgtKiaeK idefl O174_ASFB7 : 56- 63: dllii VpeKkllK hvlpn TDT_BOVIN : 269- 276: tsvfg VglKtseK wfrmg TDT_CHICK : 258- 265: tsvfg VgvKtseK wfrmg TDT_HUMAN : 258- 265: tsvfg VglKtseK wfrmg TDT_MOUSE : 258- 265: tsvfg VglKtaeK wfrmg TDT_XENLA : 254- 261: tsvfg VglKtsdK wfrmg YA26_SCHPO : 70- 77: pletc VscKlivK idwln J 10: 12.0102 10( 10) L-x(1,2)-T-x(4)-K Occurences: 10(10) DPO4_YEAST : 403- 411: yihcf LqlTpnleK lflkr DPOB_HUMAN : 76- 83: kidef La-TgklrK lekir DPOB_RAT : 76- 83: kidef La-TgklrK lekir O174_ASFB7 : 163- 171: elike LgfTyripK krl TDT_BOVIN : 212- 220: svlks LpfTiismK dtegi TDT_CHICK : 271- 278: wfrmg Lr-TveevK adktl TDT_HUMAN : 201- 209: svlks LpfTiismK dtegi TDT_MOUSE : 381- 389: lycdi LesTfekfK qpsrk TDT_XENLA : 356- 364: kekni LhnTmsvlK nrgll YA26_SCHPO : 66- 73: tigtp Le-TcvscK livki K 11: 12.0102 13( 10) V-x(2)-K-x(3,4)-K Occurences: 13(10) DPO4_YEAST : 178- 185: grasl VtdKtky-K nneli DPOB_HUMAN : 44- 51: rkaas ViaKyph-K iksga DPOB_HUMAN : 64- 71: kklpg VgtKiae-K idefl DPOB_RAT : 44- 51: rkaas ViaKyph-K iksga DPOB_RAT : 64- 71: kklpg VgtKiae-K idefl O174_ASFB7 : 56- 63: dllii VpeKkll-K hvlpn O174_ASFB7 : 149- 157: knqtl VplKitteK elike TDT_BOVIN : 269- 276: tsvfg VglKtse-K wfrmg TDT_CHICK : 258- 265: tsvfg VgvKtse-K wfrmg TDT_HUMAN : 258- 265: tsvfg VglKtse-K wfrmg TDT_MOUSE : 258- 265: tsvfg VglKtae-K wfrmg TDT_XENLA : 254- 261: tsvfg VglKtsd-K wfrmg YA26_SCHPO : 70- 77: pletc VscKliv-K idwln L 12: 12.0102 13( 10) L-x(3)-K-x(3,4)-E Occurences: 13(10) DPO4_YEAST : 561- 570: rrife LlnlKyaepE hrnie DPOB_HUMAN : 76- 85: kidef LatgKlrklE kirqd DPOB_HUMAN : 162- 171: mqdiv LnevKkvdsE yiatv DPOB_RAT : 76- 85: kidef LatgKlrklE kirqd DPOB_RAT : 162- 171: mqdiv LnevKkldpE yiatv O174_ASFB7 : 148- 156: fknqt LvplKitt-E kelik TDT_BOVIN : 66- 75: nflme LarrKgfrvE nelsd TDT_CHICK : 55- 64: tflme LarsKgfrvE selsd TDT_HUMAN : 55- 64: aflme LarrKgfrvE nelsd TDT_MOUSE : 55- 64: aflme LarrKgfrvE nelsd TDT_MOUSE : 90- 98: lewlq LqniKass-E felld TDT_XENLA : 270- 278: mgfrt LeeiKnek-E lkltk YA26_SCHPO : 186- 194: afvna LsvlKtcr-E vnges M 13: 12.0102 18( 10) L-x(0,1)-E-x-K Occurences: 18(10) DPO4_YEAST : 25- 28: ffksi L-EkK gativ DPO4_YEAST : 168- 172: plkrl LqEdK grasl DPO4_YEAST : 266- 269: ndsvg L-EdK lkyfk DPO4_YEAST : 455- 459: fspre LeElK emknd DPO4_YEAST : 458- 462: relee LkEmK ndegt DPOB_HUMAN : 162- 166: mqdiv LnEvK kvdse DPOB_RAT : 162- 166: mqdiv LnEvK kldpe O174_ASFB7 : 105- 109: dlfta LaEeK pyaif TDT_BOVIN : 51- 54: lvlfi L-EkK mgttr TDT_BOVIN : 378- 382: pkvin LwEkK gllly TDT_CHICK : 119- 122: grpvd L-EkK yhlve TDT_HUMAN : 40- 43: lvvfi L-EkK mgttr TDT_HUMAN : 367- 371: qkvmn LwEkK gllly TDT_MOUSE : 40- 43: lvlfi L-EkK mgttr TDT_XENLA : 39- 43: eivlf LvErK mgssr TDT_XENLA : 225- 229: iieei LeEgK sykvl TDT_XENLA : 270- 274: mgfrt LeEiK nekel YA26_SCHPO : 81- 85: vkidw LnEpK esltp N 14: 12.0102 11( 10) K-x(3,4)-R-x(3)-L Occurences: 11(10) DPO4_YEAST : 65- 74: mhltq KdifqReagL ndvde DPO4_YEAST : 207- 215: eiege Kfra-RsyrL akqsm DPOB_HUMAN : 147- 155: fgdfe Krip-ReemL qmqdi DPOB_RAT : 147- 155: fedfe Krip-ReemL qmqdi O174_ASFB7 : 79- 88: lsfsv KvcgeRkcvL fiewe TDT_BOVIN : 54- 63: filek KmgttRrnfL melar TDT_CHICK : 43- 52: fimqr KmgmtRrtfL melar TDT_HUMAN : 43- 52: filek KmgttRrafL melar TDT_MOUSE : 43- 52: filek KmgttRrafL melar TDT_XENLA : 43- 52: flver KmgssRrtfL melar YA26_SCHPO : 487- 495: pveae Kdif-RyfsL eyiep O 15: 12.0102 16( 10) L-x(4,5)-I-x(4)-F Occurences: 16(10) DPO4_YEAST : 197- 208: galkr LtkkyeIegekF rarsy DPO4_YEAST : 543- 553: ltqhg Lfrnn-IllesF nerri DPOB_HUMAN : 131- 142: knedk LnhhqrIglkyF gdfek DPOB_RAT : 131- 142: knedk LnhhqrIglkyF edfek O174_ASFB7 : 66- 76: llkhv Lpnir-IkglsF svkvc TDT_BOVIN : 172- 183: qrktt LnnynhIftdaF eilae TDT_CHICK : 364- 375: llhkg LllycdIiestF vkeqi TDT_CHICK : 365- 375: lhkgl Llycd-IiestF vkeqi TDT_HUMAN : 161- 172: qrrtt LnncnqIftdaF dilae TDT_MOUSE : 374- 385: wkqqg LllycdIlestF ekfkq TDT_MOUSE : 375- 385: kqqgl Llycd-IlestF ekfkq TDT_XENLA : 157- 168: qrctt LqdtnrIftdaF dilae TDT_XENLA : 188- 199: rtvaf LrasslIkslpF pitam TDT_XENLA : 368- 379: lknrg LllfynIiestF detkl TDT_XENLA : 369- 379: knrgl Llfyn-IiestF detkl YA26_SCHPO : 465- 476: feiin LktgkdIcpdeF newkd P 16: 12.0102 11( 10) I-x(3)-E-x(3,4)-K Occurences: 11(10) DPO4_YEAST : 470- 479: egtll IeeeEeeetK lnpid DPOB_HUMAN : 118- 126: fvdeg IktlEdlr-K nedkl DPOB_RAT : 118- 126: lvdeg IktlEdlr-K nedkl O174_ASFB7 : 54- 63: dvdll IivpEkkllK hvlpn TDT_BOVIN : 240- 249: iieei IedgEssevK avlnd TDT_CHICK : 229- 238: vieei IeegEssraK dvlnd TDT_HUMAN : 229- 238: iieei IedgEssevK avlnd TDT_MOUSE : 229- 238: iiegi IedgEsseaK avlnd TDT_XENLA : 415- 423: digni IdphEcer-K nwkav YA26_SCHPO : 219- 227: afplp IdsaEqle-K mpgcg YA26_SCHPO : 471- 480: ktgkd IcpdEfnewK dpvea Q 17: 12.0102 12( 10) L-L-x(4,5)-E Occurences: 12(10) DPO4_YEAST : 468- 474: ndegt LLieee-E eeetk DPO4_YEAST : 468- 475: ndegt LLieeeeE eetkl DPO4_YEAST : 549- 555: frnni LLesfn-E rrife DPO4_YEAST : 561- 568: rrife LLnlkyaE pehrn DPOB_HUMAN : 209- 215: tkqpk LLhqvv-E qlqkv DPOB_RAT : 209- 215: skqpk LLhrvv-E qlqkv O174_ASFB7 : 52- 58: lndvd LLiivp-E kkllk TDT_BOVIN : 385- 392: ekkgl LLyydlvE stfek TDT_CHICK : 365- 372: lhkgl LLycdiiE stfvk TDT_HUMAN : 374- 381: ekkgl LLyydlvE stfek TDT_MOUSE : 375- 382: kqqgl LLycdilE stfek TDT_XENLA : 369- 376: knrgl LLfyniiE stfde YA26_SCHPO : 375- 381: hlvdv LLrild-E efqfr YA26_SCHPO : 375- 382: hlvdv LLrildeE fqfrl R 18: 12.0102 16( 10) G-x(2,3)-R-R Occurences: 16(10) DPO4_YEAST : 494- 499: lnakd GnycRR ldffc DPOB_HUMAN : 178- 182: iatvc Gsf-RR gaess DPOB_RAT : 178- 182: iatvc Gsf-RR gaess O174_ASFB7 : 38- 42: nivav Gsl-RR eekml TDT_BOVIN : 56- 60: lekkm Gtt-RR nflme TDT_BOVIN : 343- 347: fvtmt Ggf-RR gkkig TDT_CHICK : 45- 49: mqrkm Gmt-RR tflme TDT_CHICK : 332- 336: lvtit Ggf-RR gkkig TDT_CHICK : 453- 458: gsrqf GrdlRR yathe TDT_HUMAN : 45- 49: lekkm Gtt-RR aflme TDT_HUMAN : 332- 336: fvtmt Ggf-RR gkkmg TDT_MOUSE : 45- 49: lekkm Gtt-RR aflme TDT_MOUSE : 332- 336: lvtmt Ggf-RR gkmtg TDT_XENLA : 45- 49: verkm Gss-RR tflme TDT_XENLA : 328- 332: ivtlt Ggf-RR gkkkg YA26_SCHPO : 344- 348: qsclv Ggf-RR gkpvg S 19: 12.0102 16( 10) R-x(3,4)-E-x(4)-L Occurences: 16(10) DPO4_YEAST : 228- 237: cdfnv Rsge-EahtkL rnigp DPO4_YEAST : 343- 353: vqkal RgidpEcqveL qgsyn DPOB_HUMAN : 111- 121: gpsaa RkfvdEgiktL edlrk DPOB_RAT : 111- 121: gpsaa RklvdEgiktL edlrk O174_ASFB7 : 17- 26: nhlrs Rlaf-EyngqL ikils TDT_BOVIN : 316- 325: vscvt Raea-EavgvL vkeav TDT_BOVIN : 472- 482: erdir RyathErkmmL dnhal TDT_CHICK : 115- 125: cmemg RpvdlEkkyhL veqag TDT_CHICK : 458- 468: grdlr RyathErkmmL dnhal TDT_HUMAN : 305- 314: vscvt Raea-EavsvL vkeav TDT_HUMAN : 460- 470: erdlr RyathErkmiL dnhal TDT_MOUSE : 305- 314: vscvn Rpea-EavsmL vkeav TDT_MOUSE : 461- 471: erdlr RyathErkmmL dnhal TDT_XENLA : 301- 310: tsyvs Raea-EtteqL iksiv TDT_XENLA : 459- 469: erdlr RyathEkrmmL dnhgl YA26_SCHPO : 377- 387: vdvll RildeEfqfrL isvqe T 20: 12.0102 14( 10) K-x(0,1)-I-x(3)-L Occurences: 14(10) DPO4_YEAST : 246- 252: gpsia KkIqviL dtgvl DPO4_YEAST : 247- 252: psiak K-IqviL dtgvl DPO4_YEAST : 384- 389: ttela K-ImetL cikly DPOB_HUMAN : 71- 76: tkiae K-IdefL atgkl DPOB_RAT : 71- 76: tkiae K-IdefL atgkl O174_ASFB7 : 8- 14: tliqg KkIvnhL rsrla O174_ASFB7 : 9- 14: liqgk K-IvnhL rsrla TDT_BOVIN : 439- 445: egktw KaIrvdL vmcpy TDT_CHICK : 425- 431: evkdw KaIrvdL vitpf TDT_HUMAN : 428- 434: egktw KaIrvdL vlcpy TDT_MOUSE : 429- 435: egkgw KaIrvdL vmcpy TDT_XENLA : 33- 39: hnvkf KeIvlfL verkm YA26_SCHPO : 300- 306: kdsft KqIkvgL efyed YA26_SCHPO : 337- 342: mpdgi K-IqscL vggfr Number of patterns evaluated by Pratt:4392 Total running time: 4 seconds