------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file DNA_PHOTOLYASES_1_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DNA_PHOTOLYASES_1_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PHR1_SINAL 501 PHR_ANANI 483 PHR_BACFI 339 PHR_ECOLI 472 PHR_HALHA 481 PHR_NEUCR 642 PHR_SALTY 450 PHR_STRGR 455 PHR_YEAST 565 Pratt run started at Thu Feb 6 19:22:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.5406 9( 9) N-R-x-R-x(5)-F-x(2)-K-x-L-x(2,3)-W-x(2)-G-x(3)-F-x(3)-L-x-D-x-D 2: 45.3706 9( 9) R-x-R-x(5)-F-x(2)-K-x-L-x(2,3)-W-x(2)-G-x(3)-F-x(3)-L-x-D-x-D 3: 41.2005 9( 9) R-x(5)-F-x(2)-K-x-L-x(2,3)-W-x(2)-G-x(3)-F-x(3)-L-x-D-x-D 4: 37.0305 9( 9) F-x(2)-K-x-L-x(2,3)-W-x(2)-G-x(3)-F-x(3)-L-x-D-x-D 5: 36.5305 9( 9) W-x(3,4)-T-G-x-P-x(2)-D-A-x-M-R-x(1,2)-L 6: 32.8604 9( 9) K-x-L-x(2,3)-W-x(2)-G-x(3)-F-x(3)-L-x-D-x-D 7: 32.8604 9( 9) T-G-x-P-x(2)-D-A-x-M-R-x(1,2)-L 8: 31.3604 9( 9) L-x(1,3)-L-x(1,3)-W-x(2)-G-x(3)-F-x(3)-L-x-D-x-D 9: 25.0203 9( 9) W-x(2)-G-x(3)-F-x(3)-L-x-D-x-D 10: 24.5203 9( 9) P-x(2)-D-A-x-M-R-x(1,2)-L 11: 24.5203 9( 9) G-x(4)-D-A-x-M-R-x(1,2)-L 12: 20.8503 9( 9) G-x(3)-F-x(3)-L-x-D-x-D 13: 20.3503 9( 9) D-A-x-M-R-x(1,2)-L 14: 20.3503 9( 9) P-x(1,2)-V-D-x(3)-R-x-L 15: 19.8503 9( 9) F-L-x(3,4)-L-x(3,4)-R-x(5)-F 16: 19.3503 9( 9) G-x(4)-P-x(3)-A-x(2,3)-R-x(0,2)-L 17: 19.3503 16( 9) L-x(2,3)-W-x(2)-G-x(3)-F-x(3,5)-D 18: 16.6802 9( 9) F-x(3)-L-x-D-x-D 19: 16.6802 9( 9) V-D-x(3)-R-x-L 20: 16.1802 9( 9) A-x-M-R-x(1,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 89.1557 9( 9) N-R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] B 2: 84.9857 9( 9) R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] C 3: 81.5078 9( 9) R-x-R-x-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] D 4: 80.8156 9( 9) R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] E 5: 78.2212 9( 9) R-x-R-x(2)-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] F 6: 75.6146 9( 9) R-x-R-x(3)-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] G 7: 73.3587 9( 9) W-x(3,4)-T-G-x-P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L H 8: 72.4354 9( 9) R-x-R-x(4)-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] I 9: 69.6887 9( 9) T-G-x-P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L J 10: 69.2563 9( 9) R-x-R-x(5)-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] K 11: 65.5186 9( 9) G-x-P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L L 12: 61.3486 9( 9) P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L M 13: 60.9162 9( 9) F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] N 14: 51.3898 9( 9) K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] O 15: 50.6670 9( 9) D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L P 16: 49.8898 9( 9) L-x(1,3)-L-x(1,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Q 17: 49.7761 9( 9) N-R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W R 18: 46.4970 9( 9) A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L S 19: 45.6060 9( 9) R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W T 20: 43.5497 9( 9) W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 89.1557 9( 9) N-R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 355- 394: tgwmh NRiRVIVSSFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 348- 387: tgwmh NRcRMIVASFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 204- 243: egwmh NRlRMITASFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 342- 381: tgwmh NRlRMITASFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 349- 388: eaymh NRvRMIVAAFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 501- 540: tgymh NRlRMIVASFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 326- 364: atgmh NRlRMITASFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 330- 369: egwmh NRaRMLAASFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 451- 490: tgyin NRsRMITASFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc B 2: 84.9857 9( 9) R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 356- 394: gwmhn RiRVIVSSFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 349- 387: gwmhn RcRMIVASFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 205- 243: gwmhn RlRMITASFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 343- 381: gwmhn RlRMITASFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 350- 388: aymhn RvRMIVAAFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 502- 540: gymhn RlRMIVASFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 327- 364: tgmhn RlRMITASFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 331- 369: gwmhn RaRMLAASFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 452- 490: gyinn RsRMITASFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc C 3: 81.5078 9( 9) R-x-R-x-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 356- 394: gwmhn RiRvIVSSFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 349- 387: gwmhn RcRmIVASFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 205- 243: gwmhn RlRmITASFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 343- 381: gwmhn RlRmITASFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 350- 388: aymhn RvRmIVAAFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 502- 540: gymhn RlRmIVASFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 327- 364: tgmhn RlRmITASFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 331- 369: gwmhn RaRmLAASFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 452- 490: gyinn RsRmITASFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc D 4: 80.8156 9( 9) R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 358- 394: mhnri RVIVSSFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 351- 387: mhnrc RMIVASFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 207- 243: mhnrl RMITASFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 345- 381: mhnrl RMITASFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 352- 388: mhnrv RMIVAAFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 504- 540: mhnrl RMIVASFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 329- 364: mhnrl RMITASFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 333- 369: mhnra RMLAASFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 454- 490: innrs RMITASFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc E 5: 78.2212 9( 9) R-x-R-x(2)-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 356- 394: gwmhn RiRviVSSFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 349- 387: gwmhn RcRmiVASFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 205- 243: gwmhn RlRmiTASFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 343- 381: gwmhn RlRmiTASFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 350- 388: aymhn RvRmiVAAFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 502- 540: gymhn RlRmiVASFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 327- 364: tgmhn RlRmiTASFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 331- 369: gwmhn RaRmlAASFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 452- 490: gyinn RsRmiTASFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc F 6: 75.6146 9( 9) R-x-R-x(3)-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 356- 394: gwmhn RiRvivSSFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 349- 387: gwmhn RcRmivASFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 205- 243: gwmhn RlRmitASFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 343- 381: gwmhn RlRmitASFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 350- 388: aymhn RvRmivAAFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 502- 540: gymhn RlRmivASFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 327- 364: tgmhn RlRmitASFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 331- 369: gwmhn RaRmlaASFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 452- 490: gyinn RsRmitASFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc G 7: 73.3587 9( 9) W-x(3,4)-T-G-x-P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L Occurences: 9(9) PHR1_SINAL : 330- 369: dkfka WrqgrTGyPLVDAGMRe-LwaTgwmhNrirViVSsFAvKfL llpwk PHR_ANANI : 323- 362: alfta WtqaqTGyPIVDAAMRq-LteTgwmhNrcrMiVAsFLtKdL iidwr PHR_BACFI : 179- 218: ddlts WkrgeTGfPIVDAGMRq-LlnEgwmhNrlrMiTAsFLtKdL lidwr PHR_ECOLI : 317- 356: ahlqa WqegkTGyPIVDAAMRq-LnsTgwmhNrlrMiTAsFLvKdL lidwr PHR_HALHA : 324- 363: aalqa WkdgeTGyPIVDAGMRq-LraEaymhNrvrMiVAaFLtKdL lvdwr PHR_NEUCR : 476- 516: dhfha WtqgrTGfPIIDAAMRqvLstGymhnRlrmIvASfLAkDlL vdwrm PHR_SALTY : 303- 341: hyfqa Wqge-TGyPIVDAAMRq-LnaTgmhnRlrmItASfLVkDlL iwrlg PHR_STRGR : 305- 344: demha WksglTGyPLVDAAMRq-LahEgwmhNrarMlAAsFLtKtL yvdwr PHR_YEAST : 426- 465: vafek WctgnTGiPIVDAIMRk-LlyTgyinNrsrMiTAsFLsKnL lidwr H 8: 72.4354 9( 9) R-x-R-x(4)-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 356- 394: gwmhn RiRvivsSFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 349- 387: gwmhn RcRmivaSFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 205- 243: gwmhn RlRmitaSFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 343- 381: gwmhn RlRmitaSFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 350- 388: aymhn RvRmivaAFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 502- 540: gymhn RlRmivaSFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 327- 364: tgmhn RlRmitaSFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 331- 369: gwmhn RaRmlaaSFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 452- 490: gyinn RsRmitaSFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc I 9: 69.6887 9( 9) T-G-x-P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L Occurences: 9(9) PHR1_SINAL : 335- 369: wrqgr TGyPLVDAGMRe-LwaTgwmhNrirViVSsFAvKfL llpwk PHR_ANANI : 328- 362: wtqaq TGyPIVDAAMRq-LteTgwmhNrcrMiVAsFLtKdL iidwr PHR_BACFI : 184- 218: wkrge TGfPIVDAGMRq-LlnEgwmhNrlrMiTAsFLtKdL lidwr PHR_ECOLI : 322- 356: wqegk TGyPIVDAAMRq-LnsTgwmhNrlrMiTAsFLvKdL lidwr PHR_HALHA : 329- 363: wkdge TGyPIVDAGMRq-LraEaymhNrvrMiVAaFLtKdL lvdwr PHR_NEUCR : 481- 516: wtqgr TGfPIIDAAMRqvLstGymhnRlrmIvASfLAkDlL vdwrm PHR_SALTY : 307- 341: awqge TGyPIVDAAMRq-LnaTgmhnRlrmItASfLVkDlL iwrlg PHR_STRGR : 310- 344: wksgl TGyPLVDAAMRq-LahEgwmhNrarMlAAsFLtKtL yvdwr PHR_YEAST : 431- 465: wctgn TGiPIVDAIMRk-LlyTgyinNrsrMiTAsFLsKnL lidwr J 10: 69.2563 9( 9) R-x-R-x(5)-F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 356- 394: gwmhn RiRvivssFAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 349- 387: gwmhn RcRmivasFLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 205- 243: gwmhn RlRmitasFLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 343- 381: gwmhn RlRmitasFLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 350- 388: aymhn RvRmivaaFLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 502- 540: gymhn RlRmivasFLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 327- 364: tgmhn RlRmitasFLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 331- 369: gwmhn RaRmlaasFLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 452- 490: gyinn RsRmitasFLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc K 11: 65.5186 9( 9) G-x-P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L Occurences: 9(9) PHR1_SINAL : 336- 369: rqgrt GyPLVDAGMRe-LwaTgwmhNrirViVSsFAvKfL llpwk PHR_ANANI : 329- 362: tqaqt GyPIVDAAMRq-LteTgwmhNrcrMiVAsFLtKdL iidwr PHR_BACFI : 185- 218: krget GfPIVDAGMRq-LlnEgwmhNrlrMiTAsFLtKdL lidwr PHR_ECOLI : 323- 356: qegkt GyPIVDAAMRq-LnsTgwmhNrlrMiTAsFLvKdL lidwr PHR_HALHA : 330- 363: kdget GyPIVDAGMRq-LraEaymhNrvrMiVAaFLtKdL lvdwr PHR_NEUCR : 482- 516: tqgrt GfPIIDAAMRqvLstGymhnRlrmIvASfLAkDlL vdwrm PHR_SALTY : 308- 341: wqget GyPIVDAAMRq-LnaTgmhnRlrmItASfLVkDlL iwrlg PHR_STRGR : 311- 344: ksglt GyPLVDAAMRq-LahEgwmhNrarMlAAsFLtKtL yvdwr PHR_YEAST : 432- 465: ctgnt GiPIVDAIMRk-LlyTgyinNrsrMiTAsFLsKnL lidwr L 12: 61.3486 9( 9) P-[IL]-[IV]-D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L Occurences: 9(9) PHR1_SINAL : 338- 369: grtgy PLVDAGMRe-LwaTgwmhNrirViVSsFAvKfL llpwk PHR_ANANI : 331- 362: aqtgy PIVDAAMRq-LteTgwmhNrcrMiVAsFLtKdL iidwr PHR_BACFI : 187- 218: getgf PIVDAGMRq-LlnEgwmhNrlrMiTAsFLtKdL lidwr PHR_ECOLI : 325- 356: gktgy PIVDAAMRq-LnsTgwmhNrlrMiTAsFLvKdL lidwr PHR_HALHA : 332- 363: getgy PIVDAGMRq-LraEaymhNrvrMiVAaFLtKdL lvdwr PHR_NEUCR : 484- 516: grtgf PIIDAAMRqvLstGymhnRlrmIvASfLAkDlL vdwrm PHR_SALTY : 310- 341: getgy PIVDAAMRq-LnaTgmhnRlrmItASfLVkDlL iwrlg PHR_STRGR : 313- 344: gltgy PLVDAAMRq-LahEgwmhNrarMlAAsFLtKtL yvdwr PHR_YEAST : 434- 465: gntgi PIVDAIMRk-LlyTgyinNrsrMiTAsFLsKnL lidwr M 13: 60.9162 9( 9) F-[AL]-[ASTV]-K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 364- 394: vivss FAVKfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 357- 387: mivas FLTKdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 213- 243: mitas FLTKdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 351- 381: mitas FLVKdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 358- 388: mivaa FLTKdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 510- 540: mivas FLAKdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 335- 364: mitas FLVKdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 339- 369: mlaas FLTKtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 460- 490: mitas FLSKnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc N 14: 51.3898 9( 9) K-x-L-x(2,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 367- 394: ssfav KfLllpWKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 360- 387: asflt KdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 216- 243: asflt KdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 354- 381: asflv KdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 361- 388: aaflt KdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 513- 540: asfla KdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 338- 364: asflv KdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 342- 369: asflt KtLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 463- 490: asfls KnLlidWRwGerWFmkhLIDgDsSSNvG gwgfc O 15: 50.6670 9( 9) D-A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L Occurences: 9(9) PHR1_SINAL : 341- 369: gyplv DAGMRe-LwaTgwmhNrirViVSsFAvKfL llpwk PHR_ANANI : 334- 362: gypiv DAAMRq-LteTgwmhNrcrMiVAsFLtKdL iidwr PHR_BACFI : 190- 218: gfpiv DAGMRq-LlnEgwmhNrlrMiTAsFLtKdL lidwr PHR_ECOLI : 328- 356: gypiv DAAMRq-LnsTgwmhNrlrMiTAsFLvKdL lidwr PHR_HALHA : 335- 363: gypiv DAGMRq-LraEaymhNrvrMiVAaFLtKdL lvdwr PHR_NEUCR : 487- 516: gfpii DAAMRqvLstGymhnRlrmIvASfLAkDlL vdwrm PHR_SALTY : 313- 341: gypiv DAAMRq-LnaTgmhnRlrmItASfLVkDlL iwrlg PHR_STRGR : 316- 344: gyplv DAAMRq-LahEgwmhNrarMlAAsFLtKtL yvdwr PHR_YEAST : 437- 465: gipiv DAIMRk-LlyTgyinNrsrMiTAsFLsKnL lidwr P 16: 49.8898 9( 9) L-x(1,3)-L-x(1,3)-W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 369- 394: favkf Ll--Lp--WKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 358- 387: ivasf LtkdLiidWRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 214- 243: itasf LtkdLlidWRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 352- 381: itasf LvkdLlidWReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 359- 388: ivaaf LtkdLlvdWRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 511- 540: ivasf LakdLlvdWRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 336- 364: itasf LvkdLli-WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 340- 369: laasf LtktLyvdWReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 461- 490: itasf LsknLlidWRwGerWFmkhLIDgDsSSNvG gwgfc Q 17: 49.7761 9( 9) N-R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W Occurences: 9(9) PHR1_SINAL : 355- 373: tgwmh NRiRVIVSSFAVKfLllpW kwgmk PHR_ANANI : 348- 366: tgwmh NRcRMIVASFLTKdLiidW rrgeq PHR_BACFI : 204- 222: egwmh NRlRMITASFLTKdLlidW rlger PHR_ECOLI : 342- 360: tgwmh NRlRMITASFLVKdLlidW reger PHR_HALHA : 349- 367: eaymh NRvRMIVAAFLTKdLlvdW ragyd PHR_NEUCR : 501- 519: tgymh NRlRMIVASFLAKdLlvdW rmger PHR_SALTY : 326- 343: atgmh NRlRMITASFLVKdLli-W rlger PHR_STRGR : 330- 348: egwmh NRaRMLAASFLTKtLyvdW regar PHR_YEAST : 451- 469: tgyin NRsRMITASFLSKnLlidW rwger R 18: 46.4970 9( 9) A-[AGI]-M-R-x(1,2)-L-x(2)-[EGT]-x(4)-[NR]-x(3)-[IMV]-x-[ATV]-[AS]-x-[FL]-[ALV]-x-[DK]-x-L Occurences: 9(9) PHR1_SINAL : 342- 369: yplvd AGMRe-LwaTgwmhNrirViVSsFAvKfL llpwk PHR_ANANI : 335- 362: ypivd AAMRq-LteTgwmhNrcrMiVAsFLtKdL iidwr PHR_BACFI : 191- 218: fpivd AGMRq-LlnEgwmhNrlrMiTAsFLtKdL lidwr PHR_ECOLI : 329- 356: ypivd AAMRq-LnsTgwmhNrlrMiTAsFLvKdL lidwr PHR_HALHA : 336- 363: ypivd AGMRq-LraEaymhNrvrMiVAaFLtKdL lvdwr PHR_NEUCR : 488- 516: fpiid AAMRqvLstGymhnRlrmIvASfLAkDlL vdwrm PHR_SALTY : 314- 341: ypivd AAMRq-LnaTgmhnRlrmItASfLVkDlL iwrlg PHR_STRGR : 317- 344: yplvd AAMRq-LahEgwmhNrarMlAAsFLtKtL yvdwr PHR_YEAST : 438- 465: ipivd AIMRk-LlyTgyinNrsrMiTAsFLsKnL lidwr S 19: 45.6060 9( 9) R-x-R-[MV]-[IL]-[ATV]-[AS]-[AS]-F-[AL]-[ASTV]-K-x-L-x(2,3)-W Occurences: 9(9) PHR1_SINAL : 356- 373: gwmhn RiRVIVSSFAVKfLllpW kwgmk PHR_ANANI : 349- 366: gwmhn RcRMIVASFLTKdLiidW rrgeq PHR_BACFI : 205- 222: gwmhn RlRMITASFLTKdLlidW rlger PHR_ECOLI : 343- 360: gwmhn RlRMITASFLVKdLlidW reger PHR_HALHA : 350- 367: aymhn RvRMIVAAFLTKdLlvdW ragyd PHR_NEUCR : 502- 519: gymhn RlRMIVASFLAKdLlvdW rmger PHR_SALTY : 327- 343: tgmhn RlRMITASFLVKdLli-W rlger PHR_STRGR : 331- 348: gwmhn RaRMLAASFLTKtLyvdW regar PHR_YEAST : 452- 469: gyinn RsRMITASFLSKnLlidW rwger T 20: 43.5497 9( 9) W-[KR]-x-G-x(2)-[FHWY]-F-x(3)-L-[AILV]-D-x-D-x-[AES]-[ACNS]-[DN]-x-[GIL] Occurences: 9(9) PHR1_SINAL : 373- 394: flllp WKwGmkYFwdtLLDaDlECDiI gwqyi PHR_ANANI : 366- 387: dliid WRrGeqFFmqhLVDgDlAANnG gwqws PHR_BACFI : 222- 243: dllid WRlGerYFermLIDyDpSSNiG gwqwa PHR_ECOLI : 360- 381: dllid WReGerYFmsqLIDgDlAANnG gwqwa PHR_HALHA : 367- 388: dllvd WRaGydWFrekLADhDtANDnG gwqwa PHR_NEUCR : 519- 540: dllvd WRmGerYFmehLIDgDfASNnG gwgfa PHR_SALTY : 343- 364: kdlli WRlGerYFmsqLIDgDlAANgG wqwaa PHR_STRGR : 348- 369: tlyvd WReGarHFldlLVDgDvANNqL nwqwv PHR_YEAST : 469- 490: nllid WRwGerWFmkhLIDgDsSSNvG gwgfc Number of patterns evaluated by Pratt:6500 Total running time: 7 seconds