------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file DNA_MISMATCH_REPAIR_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DNA_MISMATCH_REPAIR_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DUG_HUMAN 1137 HEXA_STRPN 844 MSH1_YEAST 959 MSH2_HUMAN 934 MSH2_MOUSE 935 MSH2_YEAST 966 MSH3_YEAST 1047 MSH4_YEAST 878 MUTS_AZOVI 855 MUTS_ECOLI 853 MUTS_HAEIN 861 MUTS_SALTY 854 REP3_MOUSE 1091 SPE1_DROME 913 SWI4_SCHPO 993 Pratt run started at Thu Feb 6 19:20:42 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 15( 15) T-G-x-N-M-x-G-K-S 2: 25.0203 15( 15) G-x-N-M-x-G-K-S 3: 24.0203 15( 15) E-x-G-R-G-x(5)-G-x(3,5)-A 4: 24.0203 15( 15) D-x(2)-G-R-G-x(5)-G-x(3,5)-A 5: 20.8503 15( 15) N-M-x-G-K-S 6: 19.8503 15( 15) G-R-G-x(5)-G-x(3,5)-A 7: 16.6802 15( 15) M-x-G-K-S 8: 16.1802 15( 15) T-x(2)-G-x-R-x(0,1)-L 9: 15.6802 26( 15) I-x(0,1)-T-x(2,3)-N-x(4)-S 10: 15.6802 26( 15) I-x(0,1)-T-x(5)-G-x(1,2)-S 11: 15.6802 15( 15) I-x(1,2)-P-x(3,4)-K-S 12: 15.6802 16( 15) R-G-x(5)-G-x(3,5)-A 13: 15.6802 17( 15) L-x(3)-D-x(3,4)-R-x(0,1)-G 14: 15.6802 16( 15) L-x(3,4)-D-x(0,1)-E-x-G 15: 15.6802 15( 15) P-x(3,4)-K-S-x(3,4)-Q 16: 15.6802 15( 15) G-x(0,1)-P-x(3)-G-x(0,1)-S 17: 15.1802 24( 15) L-x(1,3)-D-x(0,1)-E-x-G 18: 15.1802 20( 15) L-x(3,5)-L-x(2,3)-T-x(4)-G 19: 15.1802 19( 15) S-x(0,2)-L-x(3)-D-x(3,4)-R 20: 15.1802 15( 15) A-x(3,4)-S-x(0,2)-L-x(4)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 111.2228 15( 15) T-G-[CP]-N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] B 2: 108.0223 15( 15) T-G-x-N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] C 3: 107.0527 15( 15) G-[CP]-N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] D 4: 99.6823 15( 15) N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] E 5: 97.7468 15( 15) M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS]-x(4)-[EGNS] F 6: 44.7257 15( 15) L-[AILPV]-[IL]-[FILMV]-D-x(3,4)-R-x(0,1)-G-[ST]-[AGS]-x(3)-[GS]-x-[ACGNS]-[ILMV]-[AS]-x(4)-[DEK]-x-[FIL] G 7: 42.1045 26( 15) I-x(0,1)-T-x(2,3)-N-x-[GS]-[GT]-[EK]-S-x(4)-[QRS]-x-[AGT]-x(2)-[ACSTV]-x(2)-[AQ]-x(2)-[GL]-x(3)-[AP] H 8: 41.6385 26( 15) I-x(0,1)-T-[GQ]-x-[EN]-x-[GQS]-G-x(1,2)-S-x(4)-[QRS]-x-[AGT]-x(2)-[ACSTV]-x(2)-[AQ]-x(2)-[GL]-x(3)-[AP] I 9: 39.7916 15( 15) D-E-[ILV]-G-R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A J 10: 35.6215 15( 15) E-[ILV]-G-R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A K 11: 28.7896 15( 15) G-R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A L 12: 27.6024 15( 15) P-x(3,4)-K-S-x(3,4)-Q-x-[AGST]-x(2)-[ANSTV]-x(2)-[APS]-x(2)-[GLV]-x(3)-[APT] M 13: 24.9108 15( 15) G-x(0,1)-P-[AN]-[LM]-x-G-x(0,1)-S-x(2)-[ILMV] N 14: 24.6196 15( 15) R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A O 15: 21.3907 18( 15) S-x(0,2)-L-[AILPV]-x-[FILMV]-D-x(3,4)-R-x(2)-[ACGS] P 16: 19.6187 15( 15) A-x(3,4)-S-x(0,2)-L-x(3)-[ADET]-E-x-[GNSV] Q 17: 18.3653 16( 15) L-x(3,4)-D-x(0,1)-E-x-G-x-[CGS] R 18: 17.8653 24( 15) L-x(1,3)-D-x(0,1)-E-x-G-x-[CGS] S 19: 16.1802 15( 15) T-x(2)-G-x-R-x(0,1)-L T 20: 15.6802 15( 15) I-x(1,2)-P-x(3,4)-K-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 111.2228 15( 15) T-G-[CP]-N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] Occurences: 15(15) DUG_HUMAN : 895- 943: rvmii TGPNMGGKSSYIKQvAliTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg HEXA_STRPN : 601- 649: siqlv TGPNMSGKSTYMRQlAmtAVMAqlGSyVPAesahLPiFDaIftRIGAaD dlvsg MSH1_YEAST : 770- 818: nlwvi TGPNMGGKSTFLRQnAiiVILAqiGCfVPCskarVGiVDkLfsRVGSaD dlyne MSH2_HUMAN : 668- 716: mfhii TGPNMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_MOUSE : 668- 716: mfhii TGPNMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_YEAST : 687- 735: dflii TGPNMGGKSTYIRQvGviSLMAqiGCfVPCeeaeIAiVDaIlcRVGAgD sqlkg MSH3_YEAST : 819- 867: kinii TGPNMGGKSSYIRQvAllTIMAqiGSfVPAeeirLSiFEnVltRIGAhD diing MSH4_YEAST : 633- 681: slqii TGCNMSGKSVYLKQvAliCIMAqmGSgIPAlygsFPvFKrLhaRVCNdS melts MUTS_AZOVI : 612- 660: rmlii TGPNMGGKSTYMRQtAliVLLAhiGSfVPAqsceLSlVDrIftRIGSsD dlagg MUTS_ECOLI : 613- 661: rmlii TGPNMGGKSTYMRQtAliALMAyiGSyVPAqkveIGpIDrIftRVGAaD dlasg MUTS_HAEIN : 615- 663: hllvi TGPNMGGKSTYMRQtAliTLLAyiGSfVPAdsarIGpIDrIftRIGAsD dlasg MUTS_SALTY : 614- 662: rmlii TGPNMGGKSTYMRQtAliALLAyiGSyVPAqnveIGpIDrIftRVGAaD dlasg REP3_MOUSE : 849- 897: rvmii TGPNMGGKSSYIKQvTlvTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg SPE1_DROME : 662- 710: nmfii TGPNMGGKSTYIRSvGtaVLMAhiGAfVPCslatISmVDsIlgRVGAsD niikg SWI4_SCHPO : 758- 806: rclli TGPNMGGKSSFVKQlAlsAIMAqsGCfVPAksalLPiFDsIliRMGSsD nlsvn B 2: 108.0223 15( 15) T-G-x-N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] Occurences: 15(15) DUG_HUMAN : 895- 943: rvmii TGpNMGGKSSYIKQvAliTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg HEXA_STRPN : 601- 649: siqlv TGpNMSGKSTYMRQlAmtAVMAqlGSyVPAesahLPiFDaIftRIGAaD dlvsg MSH1_YEAST : 770- 818: nlwvi TGpNMGGKSTFLRQnAiiVILAqiGCfVPCskarVGiVDkLfsRVGSaD dlyne MSH2_HUMAN : 668- 716: mfhii TGpNMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_MOUSE : 668- 716: mfhii TGpNMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_YEAST : 687- 735: dflii TGpNMGGKSTYIRQvGviSLMAqiGCfVPCeeaeIAiVDaIlcRVGAgD sqlkg MSH3_YEAST : 819- 867: kinii TGpNMGGKSSYIRQvAllTIMAqiGSfVPAeeirLSiFEnVltRIGAhD diing MSH4_YEAST : 633- 681: slqii TGcNMSGKSVYLKQvAliCIMAqmGSgIPAlygsFPvFKrLhaRVCNdS melts MUTS_AZOVI : 612- 660: rmlii TGpNMGGKSTYMRQtAliVLLAhiGSfVPAqsceLSlVDrIftRIGSsD dlagg MUTS_ECOLI : 613- 661: rmlii TGpNMGGKSTYMRQtAliALMAyiGSyVPAqkveIGpIDrIftRVGAaD dlasg MUTS_HAEIN : 615- 663: hllvi TGpNMGGKSTYMRQtAliTLLAyiGSfVPAdsarIGpIDrIftRIGAsD dlasg MUTS_SALTY : 614- 662: rmlii TGpNMGGKSTYMRQtAliALLAyiGSyVPAqnveIGpIDrIftRVGAaD dlasg REP3_MOUSE : 849- 897: rvmii TGpNMGGKSSYIKQvTlvTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg SPE1_DROME : 662- 710: nmfii TGpNMGGKSTYIRSvGtaVLMAhiGAfVPCslatISmVDsIlgRVGAsD niikg SWI4_SCHPO : 758- 806: rclli TGpNMGGKSSFVKQlAlsAIMAqsGCfVPAksalLPiFDsIliRMGSsD nlsvn C 3: 107.0527 15( 15) G-[CP]-N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] Occurences: 15(15) DUG_HUMAN : 896- 943: vmiit GPNMGGKSSYIKQvAliTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg HEXA_STRPN : 602- 649: iqlvt GPNMSGKSTYMRQlAmtAVMAqlGSyVPAesahLPiFDaIftRIGAaD dlvsg MSH1_YEAST : 771- 818: lwvit GPNMGGKSTFLRQnAiiVILAqiGCfVPCskarVGiVDkLfsRVGSaD dlyne MSH2_HUMAN : 669- 716: fhiit GPNMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_MOUSE : 669- 716: fhiit GPNMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_YEAST : 688- 735: fliit GPNMGGKSTYIRQvGviSLMAqiGCfVPCeeaeIAiVDaIlcRVGAgD sqlkg MSH3_YEAST : 820- 867: iniit GPNMGGKSSYIRQvAllTIMAqiGSfVPAeeirLSiFEnVltRIGAhD diing MSH4_YEAST : 634- 681: lqiit GCNMSGKSVYLKQvAliCIMAqmGSgIPAlygsFPvFKrLhaRVCNdS melts MUTS_AZOVI : 613- 660: mliit GPNMGGKSTYMRQtAliVLLAhiGSfVPAqsceLSlVDrIftRIGSsD dlagg MUTS_ECOLI : 614- 661: mliit GPNMGGKSTYMRQtAliALMAyiGSyVPAqkveIGpIDrIftRVGAaD dlasg MUTS_HAEIN : 616- 663: llvit GPNMGGKSTYMRQtAliTLLAyiGSfVPAdsarIGpIDrIftRIGAsD dlasg MUTS_SALTY : 615- 662: mliit GPNMGGKSTYMRQtAliALLAyiGSyVPAqnveIGpIDrIftRVGAaD dlasg REP3_MOUSE : 850- 897: vmiit GPNMGGKSSYIKQvTlvTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg SPE1_DROME : 663- 710: mfiit GPNMGGKSTYIRSvGtaVLMAhiGAfVPCslatISmVDsIlgRVGAsD niikg SWI4_SCHPO : 759- 806: cllit GPNMGGKSSFVKQlAlsAIMAqsGCfVPAksalLPiFDsIliRMGSsD nlsvn D 4: 99.6823 15( 15) N-M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS] Occurences: 15(15) DUG_HUMAN : 898- 943: iitgp NMGGKSSYIKQvAliTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg HEXA_STRPN : 604- 649: lvtgp NMSGKSTYMRQlAmtAVMAqlGSyVPAesahLPiFDaIftRIGAaD dlvsg MSH1_YEAST : 773- 818: vitgp NMGGKSTFLRQnAiiVILAqiGCfVPCskarVGiVDkLfsRVGSaD dlyne MSH2_HUMAN : 671- 716: iitgp NMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_MOUSE : 671- 716: iitgp NMGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgD sqlkg MSH2_YEAST : 690- 735: iitgp NMGGKSTYIRQvGviSLMAqiGCfVPCeeaeIAiVDaIlcRVGAgD sqlkg MSH3_YEAST : 822- 867: iitgp NMGGKSSYIRQvAllTIMAqiGSfVPAeeirLSiFEnVltRIGAhD diing MSH4_YEAST : 636- 681: iitgc NMSGKSVYLKQvAliCIMAqmGSgIPAlygsFPvFKrLhaRVCNdS melts MUTS_AZOVI : 615- 660: iitgp NMGGKSTYMRQtAliVLLAhiGSfVPAqsceLSlVDrIftRIGSsD dlagg MUTS_ECOLI : 616- 661: iitgp NMGGKSTYMRQtAliALMAyiGSyVPAqkveIGpIDrIftRVGAaD dlasg MUTS_HAEIN : 618- 663: vitgp NMGGKSTYMRQtAliTLLAyiGSfVPAdsarIGpIDrIftRIGAsD dlasg MUTS_SALTY : 617- 662: iitgp NMGGKSTYMRQtAliALLAyiGSyVPAqnveIGpIDrIftRVGAaD dlasg REP3_MOUSE : 852- 897: iitgp NMGGKSSYIKQvTlvTIMAqiGSyVPAeeatIGiVDgIftRMGAaD niykg SPE1_DROME : 665- 710: iitgp NMGGKSTYIRSvGtaVLMAhiGAfVPCslatISmVDsIlgRVGAsD niikg SWI4_SCHPO : 761- 806: litgp NMGGKSSFVKQlAlsAIMAqsGCfVPAksalLPiFDsIliRMGSsD nlsvn E 5: 97.7468 15( 15) M-[GS]-G-K-S-[STV]-[FY]-[ILMV]-[KR]-[QS]-x-[AGT]-x(2)-[ACSTV]-[ILV]-[LM]-A-x(2)-G-[ACS]-x-[IV]-P-[AC]-x(4)-[FILV]-[AGPS]-x-[FIV]-[DEK]-x-[ILV]-x(2)-R-[IMV]-[CG]-[ANS]-x-[DS]-x(4)-[EGNS] Occurences: 15(15) DUG_HUMAN : 899- 948: itgpn MGGKSSYIKQvAliTIMAqiGSyVPAeeatIGiVDgIftRMGAaDniykG rstfm HEXA_STRPN : 605- 654: vtgpn MSGKSTYMRQlAmtAVMAqlGSyVPAesahLPiFDaIftRIGAaDdlvsG qstfm MSH1_YEAST : 774- 823: itgpn MGGKSTFLRQnAiiVILAqiGCfVPCskarVGiVDkLfsRVGSaDdlynE mstfm MSH2_HUMAN : 672- 721: itgpn MGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgDsqlkG vstfm MSH2_MOUSE : 672- 721: itgpn MGGKSTYIRQtGviVLMAqiGCfVPCesaeVSiVDcIlaRVGAgDsqlkG vstfm MSH2_YEAST : 691- 740: itgpn MGGKSTYIRQvGviSLMAqiGCfVPCeeaeIAiVDaIlcRVGAgDsqlkG vstfm MSH3_YEAST : 823- 872: itgpn MGGKSSYIRQvAllTIMAqiGSfVPAeeirLSiFEnVltRIGAhDdiinG dstfk MSH4_YEAST : 637- 686: itgcn MSGKSVYLKQvAliCIMAqmGSgIPAlygsFPvFKrLhaRVCNdSmeltS snfgf MUTS_AZOVI : 616- 665: itgpn MGGKSTYMRQtAliVLLAhiGSfVPAqsceLSlVDrIftRIGSsDdlagG rstfm MUTS_ECOLI : 617- 666: itgpn MGGKSTYMRQtAliALMAyiGSyVPAqkveIGpIDrIftRVGAaDdlasG rstfm MUTS_HAEIN : 619- 668: itgpn MGGKSTYMRQtAliTLLAyiGSfVPAdsarIGpIDrIftRIGAsDdlasG rstfm MUTS_SALTY : 618- 667: itgpn MGGKSTYMRQtAliALLAyiGSyVPAqnveIGpIDrIftRVGAaDdlasG rstfm REP3_MOUSE : 853- 902: itgpn MGGKSSYIKQvTlvTIMAqiGSyVPAeeatIGiVDgIftRMGAaDniykG rstfm SPE1_DROME : 666- 715: itgpn MGGKSTYIRSvGtaVLMAhiGAfVPCslatISmVDsIlgRVGAsDniikG lstfm SWI4_SCHPO : 762- 811: itgpn MGGKSSFVKQlAlsAIMAqsGCfVPAksalLPiFDsIliRMGSsDnlsvN mstfm F 6: 44.7257 15( 15) L-[AILPV]-[IL]-[FILMV]-D-x(3,4)-R-x(0,1)-G-[ST]-[AGS]-x(3)-[GS]-x-[ACGNS]-[ILMV]-[AS]-x(4)-[DEK]-x-[FIL] Occurences: 15(15) DUG_HUMAN : 971- 997: atsqs LVILDelg-R-GTSthdGiAIAyatlEyF irdvk HEXA_STRPN : 677- 703: atkns LILFDelg-R-GTAtydGmALAqsiiEyI hehig MSH1_YEAST : 846- 872: aters LAILDeig-R-GTSgkeGiSIAyatlKyL lennq MSH2_HUMAN : 744- 770: atkds LIIIDelg-R-GTStydGfGLAwaisEyI atkig MSH2_MOUSE : 744- 770: atkds LIIIDelg-R-GTStydGfGLAwaisDyI atkig MSH2_YEAST : 763- 789: askns LIIVDelg-R-GTStydGfGLAwaiaEhI askig MSH3_YEAST : 895- 921: cnkrs LLLLDevg-R-GTGthdGiAISyaliKyF selsd MSH4_YEAST : 708- 734: intet LLILDelg-R-GSSiadGfCVSlavtEhL lrtea MUTS_AZOVI : 688- 714: asers LVLMDevg-R-GTStfdGlSLAwaaaEhL aglra MUTS_ECOLI : 689- 715: ateys LVLMDeig-R-GTStydGlSLAwacaEnL ankik MUTS_HAEIN : 691- 717: ataqs LVLIDeig-R-GTStydGlSLAwacaEwL skkir MUTS_SALTY : 690- 716: atens LVLMDeig-R-GTStydGlSLAwacaEnL ankik REP3_MOUSE : 925- 951: aspqs LVILDelg-R-GTSthdGiAIAyatlEyF irdvk SPE1_DROME : 738- 764: atdks LVIIDelg-R-GTStyeGcGIAwsiaEhL aketk SWI4_SCHPO : 792- 820: aksal LPIFDsiliRmGSSdnlSvNMStfmvEmL etkev G 7: 42.1045 26( 15) I-x(0,1)-T-x(2,3)-N-x-[GS]-[GT]-[EK]-S-x(4)-[QRS]-x-[AGT]-x(2)-[ACSTV]-x(2)-[AQ]-x(2)-[GL]-x(3)-[AP] Occurences: 26(15) DUG_HUMAN : 893- 923: servm IiTgp-NmGGKSsyikQvAliTimAqiGsyvP aeeat DUG_HUMAN : 894- 923: ervmi I-Tgp-NmGGKSsyikQvAliTimAqiGsyvP aeeat HEXA_STRPN : 780- 811: aradk IlTqleNqGTESpppmRqTsaVteQisLfdrA eehpi MSH1_YEAST : 769- 798: dnlwv I-Tgp-NmGGKStflrQnAiiVilAqiGcfvP cskar MSH2_HUMAN : 666- 696: kqmfh IiTgp-NmGGKStyirQtGviVlmAqiGcfvP cesae MSH2_HUMAN : 667- 696: qmfhi I-Tgp-NmGGKStyirQtGviVlmAqiGcfvP cesae MSH2_MOUSE : 666- 696: kqmfh IiTgp-NmGGKStyirQtGviVlmAqiGcfvP cesae MSH2_MOUSE : 667- 696: qmfhi I-Tgp-NmGGKStyirQtGviVlmAqiGcfvP cesae MSH2_YEAST : 685- 715: kgdfl IiTgp-NmGGKStyirQvGviSlmAqiGcfvP ceeae MSH2_YEAST : 686- 715: gdfli I-Tgp-NmGGKStyirQvGviSlmAqiGcfvP ceeae MSH3_YEAST : 817- 847: ngkin IiTgp-NmGGKSsyirQvAllTimAqiGsfvP aeeir MSH3_YEAST : 818- 847: gkini I-Tgp-NmGGKSsyirQvAllTimAqiGsfvP aeeir MSH4_YEAST : 631- 661: ssslq IiTgc-NmSGKSvylkQvAliCimAqmGsgiP alygs MSH4_YEAST : 632- 661: sslqi I-Tgc-NmSGKSvylkQvAliCimAqmGsgiP alygs MUTS_AZOVI : 610- 640: ntrml IiTgp-NmGGKStymrQtAliVllAhiGsfvP aqsce MUTS_AZOVI : 611- 640: trmli I-Tgp-NmGGKStymrQtAliVllAhiGsfvP aqsce MUTS_ECOLI : 611- 641: qrrml IiTgp-NmGGKStymrQtAliAlmAyiGsyvP aqkve MUTS_ECOLI : 612- 641: rrmli I-Tgp-NmGGKStymrQtAliAlmAyiGsyvP aqkve MUTS_HAEIN : 614- 643: rhllv I-Tgp-NmGGKStymrQtAliTllAyiGsfvP adsar MUTS_SALTY : 612- 642: qrrml IiTgp-NmGGKStymrQtAliAllAyiGsyvP aqnve MUTS_SALTY : 613- 642: rrmli I-Tgp-NmGGKStymrQtAliAllAyiGsyvP aqnve REP3_MOUSE : 847- 877: servm IiTgp-NmGGKSsyikQvTlvTimAqiGsyvP aeeat REP3_MOUSE : 848- 877: ervmi I-Tgp-NmGGKSsyikQvTlvTimAqiGsyvP aeeat SPE1_DROME : 660- 690: ecnmf IiTgp-NmGGKStyirSvGtaVlmAhiGafvP cslat SPE1_DROME : 661- 690: cnmfi I-Tgp-NmGGKStyirSvGtaVlmAhiGafvP cslat SWI4_SCHPO : 757- 786: vrcll I-Tgp-NmGGKSsfvkQlAlsAimAqsGcfvP aksal H 8: 41.6385 26( 15) I-x(0,1)-T-[GQ]-x-[EN]-x-[GQS]-G-x(1,2)-S-x(4)-[QRS]-x-[AGT]-x(2)-[ACSTV]-x(2)-[AQ]-x(2)-[GL]-x(3)-[AP] Occurences: 26(15) DUG_HUMAN : 893- 923: servm IiTGpNmGGk-SsyikQvAliTimAqiGsyvP aeeat DUG_HUMAN : 894- 923: ervmi I-TGpNmGGk-SsyikQvAliTimAqiGsyvP aeeat HEXA_STRPN : 780- 811: aradk IlTQlEnQGteSpppmRqTsaVteQisLfdrA eehpi MSH1_YEAST : 769- 798: dnlwv I-TGpNmGGk-StflrQnAiiVilAqiGcfvP cskar MSH2_HUMAN : 666- 696: kqmfh IiTGpNmGGk-StyirQtGviVlmAqiGcfvP cesae MSH2_HUMAN : 667- 696: qmfhi I-TGpNmGGk-StyirQtGviVlmAqiGcfvP cesae MSH2_MOUSE : 666- 696: kqmfh IiTGpNmGGk-StyirQtGviVlmAqiGcfvP cesae MSH2_MOUSE : 667- 696: qmfhi I-TGpNmGGk-StyirQtGviVlmAqiGcfvP cesae MSH2_YEAST : 685- 715: kgdfl IiTGpNmGGk-StyirQvGviSlmAqiGcfvP ceeae MSH2_YEAST : 686- 715: gdfli I-TGpNmGGk-StyirQvGviSlmAqiGcfvP ceeae MSH3_YEAST : 817- 847: ngkin IiTGpNmGGk-SsyirQvAllTimAqiGsfvP aeeir MSH3_YEAST : 818- 847: gkini I-TGpNmGGk-SsyirQvAllTimAqiGsfvP aeeir MSH4_YEAST : 631- 661: ssslq IiTGcNmSGk-SvylkQvAliCimAqmGsgiP alygs MSH4_YEAST : 632- 661: sslqi I-TGcNmSGk-SvylkQvAliCimAqmGsgiP alygs MUTS_AZOVI : 610- 640: ntrml IiTGpNmGGk-StymrQtAliVllAhiGsfvP aqsce MUTS_AZOVI : 611- 640: trmli I-TGpNmGGk-StymrQtAliVllAhiGsfvP aqsce MUTS_ECOLI : 611- 641: qrrml IiTGpNmGGk-StymrQtAliAlmAyiGsyvP aqkve MUTS_ECOLI : 612- 641: rrmli I-TGpNmGGk-StymrQtAliAlmAyiGsyvP aqkve MUTS_HAEIN : 614- 643: rhllv I-TGpNmGGk-StymrQtAliTllAyiGsfvP adsar MUTS_SALTY : 612- 642: qrrml IiTGpNmGGk-StymrQtAliAllAyiGsyvP aqnve MUTS_SALTY : 613- 642: rrmli I-TGpNmGGk-StymrQtAliAllAyiGsyvP aqnve REP3_MOUSE : 847- 877: servm IiTGpNmGGk-SsyikQvTlvTimAqiGsyvP aeeat REP3_MOUSE : 848- 877: ervmi I-TGpNmGGk-SsyikQvTlvTimAqiGsyvP aeeat SPE1_DROME : 660- 690: ecnmf IiTGpNmGGk-StyirSvGtaVlmAhiGafvP cslat SPE1_DROME : 661- 690: cnmfi I-TGpNmGGk-StyirSvGtaVlmAhiGafvP cslat SWI4_SCHPO : 757- 786: vrcll I-TGpNmGGk-SsfvkQlAlsAimAqsGcfvP aksal I 9: 39.7916 15( 15) D-E-[ILV]-G-R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A Occurences: 15(15) DUG_HUMAN : 975- 990: slvil DELGRGTSthDGiai--A yatle DUG_HUMAN : 975- 992: slvil DELGRGTSthDGiaiayA tleyf HEXA_STRPN : 681- 696: slilf DELGRGTAtyDGmal--A qsiie MSH1_YEAST : 850- 865: slail DEIGRGTSgkEGisi--A yatlk MSH1_YEAST : 850- 867: slail DEIGRGTSgkEGisiayA tlkyl MSH2_HUMAN : 748- 763: sliii DELGRGTStyDGfgl--A waise MSH2_HUMAN : 748- 765: sliii DELGRGTStyDGfglawA iseyi MSH2_MOUSE : 748- 763: sliii DELGRGTStyDGfgl--A waisd MSH2_MOUSE : 748- 765: sliii DELGRGTStyDGfglawA isdyi MSH2_YEAST : 767- 782: sliiv DELGRGTStyDGfgl--A waiae MSH2_YEAST : 767- 784: sliiv DELGRGTStyDGfglawA iaehi MSH3_YEAST : 899- 916: sllll DEVGRGTGthDGiaisyA likyf MSH4_YEAST : 712- 729: tllil DELGRGSSiaDGfcvslA vtehl MUTS_AZOVI : 692- 707: slvlm DEVGRGTStfDGlsl--A waaae MUTS_AZOVI : 692- 709: slvlm DEVGRGTStfDGlslawA aaehl MUTS_ECOLI : 693- 708: slvlm DEIGRGTStyDGlsl--A wacae MUTS_ECOLI : 693- 710: slvlm DEIGRGTStyDGlslawA caenl MUTS_HAEIN : 695- 710: slvli DEIGRGTStyDGlsl--A wacae MUTS_HAEIN : 695- 712: slvli DEIGRGTStyDGlslawA caewl MUTS_SALTY : 694- 709: slvlm DEIGRGTStyDGlsl--A wacae MUTS_SALTY : 694- 711: slvlm DEIGRGTStyDGlslawA caenl REP3_MOUSE : 929- 944: slvil DELGRGTSthDGiai--A yatle REP3_MOUSE : 929- 946: slvil DELGRGTSthDGiaiayA tleyf SPE1_DROME : 742- 757: slvii DELGRGTStyEGcgi--A wsiae SWI4_SCHPO : 838- 855: smvii DELGRGTStiDGeaisyA vlhyl J 10: 35.6215 15( 15) E-[ILV]-G-R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A Occurences: 15(15) DUG_HUMAN : 976- 990: lvild ELGRGTSthDGiai--A yatle DUG_HUMAN : 976- 992: lvild ELGRGTSthDGiaiayA tleyf HEXA_STRPN : 682- 696: lilfd ELGRGTAtyDGmal--A qsiie MSH1_YEAST : 851- 865: laild EIGRGTSgkEGisi--A yatlk MSH1_YEAST : 851- 867: laild EIGRGTSgkEGisiayA tlkyl MSH2_HUMAN : 749- 763: liiid ELGRGTStyDGfgl--A waise MSH2_HUMAN : 749- 765: liiid ELGRGTStyDGfglawA iseyi MSH2_MOUSE : 749- 763: liiid ELGRGTStyDGfgl--A waisd MSH2_MOUSE : 749- 765: liiid ELGRGTStyDGfglawA isdyi MSH2_YEAST : 768- 782: liivd ELGRGTStyDGfgl--A waiae MSH2_YEAST : 768- 784: liivd ELGRGTStyDGfglawA iaehi MSH3_YEAST : 900- 916: lllld EVGRGTGthDGiaisyA likyf MSH4_YEAST : 713- 729: llild ELGRGSSiaDGfcvslA vtehl MUTS_AZOVI : 693- 707: lvlmd EVGRGTStfDGlsl--A waaae MUTS_AZOVI : 693- 709: lvlmd EVGRGTStfDGlslawA aaehl MUTS_ECOLI : 694- 708: lvlmd EIGRGTStyDGlsl--A wacae MUTS_ECOLI : 694- 710: lvlmd EIGRGTStyDGlslawA caenl MUTS_HAEIN : 696- 710: lvlid EIGRGTStyDGlsl--A wacae MUTS_HAEIN : 696- 712: lvlid EIGRGTStyDGlslawA caewl MUTS_SALTY : 695- 709: lvlmd EIGRGTStyDGlsl--A wacae MUTS_SALTY : 695- 711: lvlmd EIGRGTStyDGlslawA caenl REP3_MOUSE : 930- 944: lvild ELGRGTSthDGiai--A yatle REP3_MOUSE : 930- 946: lvild ELGRGTSthDGiaiayA tleyf SPE1_DROME : 743- 757: lviid ELGRGTStyEGcgi--A wsiae SWI4_SCHPO : 839- 855: mviid ELGRGTStiDGeaisyA vlhyl K 11: 28.7896 15( 15) G-R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A Occurences: 15(15) DUG_HUMAN : 978- 990: ildel GRGTSthDGiai--A yatle DUG_HUMAN : 978- 992: ildel GRGTSthDGiaiayA tleyf HEXA_STRPN : 684- 696: lfdel GRGTAtyDGmal--A qsiie MSH1_YEAST : 853- 865: ildei GRGTSgkEGisi--A yatlk MSH1_YEAST : 853- 867: ildei GRGTSgkEGisiayA tlkyl MSH2_HUMAN : 751- 763: iidel GRGTStyDGfgl--A waise MSH2_HUMAN : 751- 765: iidel GRGTStyDGfglawA iseyi MSH2_MOUSE : 751- 763: iidel GRGTStyDGfgl--A waisd MSH2_MOUSE : 751- 765: iidel GRGTStyDGfglawA isdyi MSH2_YEAST : 770- 782: ivdel GRGTStyDGfgl--A waiae MSH2_YEAST : 770- 784: ivdel GRGTStyDGfglawA iaehi MSH3_YEAST : 902- 916: lldev GRGTGthDGiaisyA likyf MSH4_YEAST : 715- 729: ildel GRGSSiaDGfcvslA vtehl MUTS_AZOVI : 695- 707: lmdev GRGTStfDGlsl--A waaae MUTS_AZOVI : 695- 709: lmdev GRGTStfDGlslawA aaehl MUTS_ECOLI : 696- 708: lmdei GRGTStyDGlsl--A wacae MUTS_ECOLI : 696- 710: lmdei GRGTStyDGlslawA caenl MUTS_HAEIN : 698- 710: lidei GRGTStyDGlsl--A wacae MUTS_HAEIN : 698- 712: lidei GRGTStyDGlslawA caewl MUTS_SALTY : 697- 709: lmdei GRGTStyDGlsl--A wacae MUTS_SALTY : 697- 711: lmdei GRGTStyDGlslawA caenl REP3_MOUSE : 932- 944: ildel GRGTSthDGiai--A yatle REP3_MOUSE : 932- 946: ildel GRGTSthDGiaiayA tleyf SPE1_DROME : 745- 757: iidel GRGTStyEGcgi--A wsiae SWI4_SCHPO : 841- 855: iidel GRGTStiDGeaisyA vlhyl L 12: 27.6024 15( 15) P-x(3,4)-K-S-x(3,4)-Q-x-[AGST]-x(2)-[ANSTV]-x(2)-[APS]-x(2)-[GLV]-x(3)-[APT] Occurences: 15(15) DUG_HUMAN : 897- 923: miitg PnmggKSsyikQvAliTimAqiGsyvP aeeat HEXA_STRPN : 603- 629: qlvtg PnmsgKStymrQlAmtAvmAqlGsyvP aesah MSH1_YEAST : 772- 798: wvitg PnmggKStflrQnAiiVilAqiGcfvP cskar MSH2_HUMAN : 670- 696: hiitg PnmggKStyirQtGviVlmAqiGcfvP cesae MSH2_MOUSE : 670- 696: hiitg PnmggKStyirQtGviVlmAqiGcfvP cesae MSH2_YEAST : 689- 715: liitg PnmggKStyirQvGviSlmAqiGcfvP ceeae MSH3_YEAST : 821- 847: niitg PnmggKSsyirQvAllTimAqiGsfvP aeeir MSH4_YEAST : 30- 54: nsisk Pstk-KSirn-QkSptNisSwaLkkkT lqiae MUTS_AZOVI : 614- 640: liitg PnmggKStymrQtAliVllAhiGsfvP aqsce MUTS_ECOLI : 615- 641: liitg PnmggKStymrQtAliAlmAyiGsyvP aqkve MUTS_HAEIN : 617- 643: lvitg PnmggKStymrQtAliTllAyiGsfvP adsar MUTS_SALTY : 616- 642: liitg PnmggKStymrQtAliAllAyiGsyvP aqnve REP3_MOUSE : 851- 877: miitg PnmggKSsyikQvTlvTimAqiGsyvP aeeat SPE1_DROME : 813- 838: lyqvr PgvmeKSfgi-QvArlAnfPehVvqnA qevyn SWI4_SCHPO : 760- 786: llitg PnmggKSsfvkQlAlsAimAqsGcfvP aksal M 13: 24.9108 15( 15) G-x(0,1)-P-[AN]-[LM]-x-G-x(0,1)-S-x(2)-[ILMV] Occurences: 15(15) DUG_HUMAN : 896- 906: vmiit G-PNMgGkSsyI kqval HEXA_STRPN : 602- 612: iqlvt G-PNMsGkStyM rqlam MSH1_YEAST : 771- 781: lwvit G-PNMgGkStfL rqnai MSH2_HUMAN : 669- 679: fhiit G-PNMgGkStyI rqtgv MSH2_MOUSE : 669- 679: fhiit G-PNMgGkStyI rqtgv MSH2_YEAST : 688- 698: fliit G-PNMgGkStyI rqvgv MSH3_YEAST : 820- 830: iniit G-PNMgGkSsyI rqval MSH4_YEAST : 659- 669: aqmgs GiPALyG-SfpV fkrlh MUTS_AZOVI : 613- 623: mliit G-PNMgGkStyM rqtal MUTS_ECOLI : 614- 624: mliit G-PNMgGkStyM rqtal MUTS_HAEIN : 616- 626: llvit G-PNMgGkStyM rqtal MUTS_SALTY : 615- 625: mliit G-PNMgGkStyM rqtal REP3_MOUSE : 850- 860: vmiit G-PNMgGkSsyI kqvtl SPE1_DROME : 663- 673: mfiit G-PNMgGkStyI rsvgt SWI4_SCHPO : 759- 769: cllit G-PNMgGkSsfV kqlal N 14: 24.6196 15( 15) R-G-[ST]-[AGS]-x(2)-[DE]-G-x(3,5)-A Occurences: 15(15) DUG_HUMAN : 979- 990: ldelg RGTSthDGiai--A yatle DUG_HUMAN : 979- 992: ldelg RGTSthDGiaiayA tleyf HEXA_STRPN : 685- 696: fdelg RGTAtyDGmal--A qsiie MSH1_YEAST : 854- 865: ldeig RGTSgkEGisi--A yatlk MSH1_YEAST : 854- 867: ldeig RGTSgkEGisiayA tlkyl MSH2_HUMAN : 752- 763: idelg RGTStyDGfgl--A waise MSH2_HUMAN : 752- 765: idelg RGTStyDGfglawA iseyi MSH2_MOUSE : 752- 763: idelg RGTStyDGfgl--A waisd MSH2_MOUSE : 752- 765: idelg RGTStyDGfglawA isdyi MSH2_YEAST : 771- 782: vdelg RGTStyDGfgl--A waiae MSH2_YEAST : 771- 784: vdelg RGTStyDGfglawA iaehi MSH3_YEAST : 903- 916: ldevg RGTGthDGiaisyA likyf MSH4_YEAST : 716- 729: ldelg RGSSiaDGfcvslA vtehl MUTS_AZOVI : 696- 707: mdevg RGTStfDGlsl--A waaae MUTS_AZOVI : 696- 709: mdevg RGTStfDGlslawA aaehl MUTS_ECOLI : 697- 708: mdeig RGTStyDGlsl--A wacae MUTS_ECOLI : 697- 710: mdeig RGTStyDGlslawA caenl MUTS_HAEIN : 699- 710: ideig RGTStyDGlsl--A wacae MUTS_HAEIN : 699- 712: ideig RGTStyDGlslawA caewl MUTS_SALTY : 698- 709: mdeig RGTStyDGlsl--A wacae MUTS_SALTY : 698- 711: mdeig RGTStyDGlslawA caenl REP3_MOUSE : 933- 944: ldelg RGTSthDGiai--A yatle REP3_MOUSE : 933- 946: ldelg RGTSthDGiaiayA tleyf SPE1_DROME : 746- 757: idelg RGTStyEGcgi--A wsiae SWI4_SCHPO : 842- 855: idelg RGTStiDGeaisyA vlhyl O 15: 21.3907 18( 15) S-x(0,2)-L-[AILPV]-x-[FILMV]-D-x(3,4)-R-x(2)-[ACGS] Occurences: 18(15) DUG_HUMAN : 968- 982: irkat SqsLViLDelg-RgtS thdgi DUG_HUMAN : 970- 982: katsq S--LViLDelg-RgtS thdgi HEXA_STRPN : 632- 647: yvpae SahLPiFDaiftRigA addlv HEXA_STRPN : 676- 688: hatkn S--LIlFDelg-RgtA tydgm MSH1_YEAST : 845- 857: gater S--LAiLDeig-RgtS gkegi MSH2_HUMAN : 743- 755: satkd S--LIiIDelg-RgtS tydgf MSH2_MOUSE : 743- 755: satkd S--LIiIDelg-RgtS tydgf MSH2_YEAST : 762- 774: naskn S--LIiVDelg-RgtS tydgf MSH3_YEAST : 894- 906: ncnkr S--LLlLDevg-RgtG thdgi MSH4_YEAST : 345- 358: rlemk S--LPdLDklfsRllC inhsa MUTS_AZOVI : 687- 699: naser S--LVlMDevg-RgtS tfdgl MUTS_ECOLI : 688- 700: natey S--LVlMDeig-RgtS tydgl MUTS_HAEIN : 690- 702: qataq S--LVlIDeig-RgtS tydgl MUTS_SALTY : 689- 701: naten S--LVlMDeig-RgtS tydgl REP3_MOUSE : 924- 936: raspq S--LViLDelg-RgtS thdgi SPE1_DROME : 145- 159: gnsii Sl-LVkLDgggqRrvG vasve SPE1_DROME : 737- 749: tatdk S--LViIDelg-RgtS tyegc SWI4_SCHPO : 789- 804: fvpak SalLPiFDsiliRmgS sdnls P 16: 19.6187 15( 15) A-x(3,4)-S-x(0,2)-L-x(3)-[ADET]-E-x-[GNSV] Occurences: 15(15) DUG_HUMAN : 966- 978: eiirk Atsq-S--LvilDElG rgtst HEXA_STRPN : 672- 684: naish Atkn-S--LilfDElG rgtat MSH1_YEAST : 841- 853: filqg Ater-S--LailDEiG rgtsg MSH2_HUMAN : 739- 751: silrs Atkd-S--LiiiDElG rgtst MSH2_MOUSE : 739- 751: silrs Atkd-S--LiiiDElG rgtst MSH2_YEAST : 758- 770: silkn Askn-S--LiivDElG rgtst MSH3_YEAST : 62- 76: avgng Agse-SicLdtdEEdN lssva MSH4_YEAST : 558- 571: lldki Athi-Se-LfmiAEaV aildl MUTS_AZOVI : 683- 695: nilhn Aser-S--LvlmDEvG rgtst MUTS_ECOLI : 684- 696: nilhn Atey-S--LvlmDEiG rgtst MUTS_HAEIN : 686- 698: nilhq Ataq-S--LvliDEiG rgtst MUTS_SALTY : 685- 697: nilhn Aten-S--LvlmDEiG rgtst REP3_MOUSE : 920- 932: eiirr Aspq-S--LvilDElG rgtst SPE1_DROME : 733- 745: giirt Atdk-S--LviiDElG rgtst SWI4_SCHPO : 933- 947: nvarm AgipfSi-LsraTEiS enyek Q 17: 18.3653 16( 15) L-x(3,4)-D-x(0,1)-E-x-G-x-[CGS] Occurences: 16(15) DUG_HUMAN : 971- 980: atsqs Lvil-D-ElGrG tsthd HEXA_STRPN : 677- 686: atkns Lilf-D-ElGrG tatyd MSH1_YEAST : 846- 855: aters Lail-D-EiGrG tsgke MSH2_HUMAN : 744- 753: atkds Liii-D-ElGrG tstyd MSH2_MOUSE : 744- 753: atkds Liii-D-ElGrG tstyd MSH2_YEAST : 763- 772: askns Liiv-D-ElGrG tstyd MSH3_YEAST : 895- 904: cnkrs Llll-D-EvGrG tgthd MSH4_YEAST : 708- 717: intet Llil-D-ElGrG ssiad MUTS_AZOVI : 688- 697: asers Lvlm-D-EvGrG tstfd MUTS_ECOLI : 689- 698: ateys Lvlm-D-EiGrG tstyd MUTS_HAEIN : 691- 700: ataqs Lvli-D-EiGrG tstyd MUTS_SALTY : 690- 699: atens Lvlm-D-EiGrG tstyd REP3_MOUSE : 573- 584: qienl LrklpDvErGlC siyhk REP3_MOUSE : 925- 934: aspqs Lvil-D-ElGrG tsthd SPE1_DROME : 738- 747: atdks Lvii-D-ElGrG tstye SWI4_SCHPO : 482- 493: airkm LyrlpDlEkGlS riyyq R 18: 17.8653 24( 15) L-x(1,3)-D-x(0,1)-E-x-G-x-[CGS] Occurences: 24(15) DUG_HUMAN : 971- 980: atsqs LvilD-ElGrG tsthd HEXA_STRPN : 677- 686: atkns LilfD-ElGrG tatyd HEXA_STRPN : 679- 686: knsli Lf--D-ElGrG tatyd MSH1_YEAST : 846- 855: aters LailD-EiGrG tsgke MSH2_HUMAN : 744- 753: atkds LiiiD-ElGrG tstyd MSH2_MOUSE : 744- 753: atkds LiiiD-ElGrG tstyd MSH2_YEAST : 763- 772: askns LiivD-ElGrG tstyd MSH3_YEAST : 895- 904: cnkrs LlllD-EvGrG tgthd MSH3_YEAST : 896- 904: nkrsl Lll-D-EvGrG tgthd MSH3_YEAST : 897- 904: krsll Ll--D-EvGrG tgthd MSH4_YEAST : 708- 717: intet LlilD-ElGrG ssiad MSH4_YEAST : 709- 717: ntetl Lil-D-ElGrG ssiad MUTS_AZOVI : 688- 697: asers LvlmD-EvGrG tstfd MUTS_AZOVI : 690- 697: erslv Lm--D-EvGrG tstfd MUTS_ECOLI : 689- 698: ateys LvlmD-EiGrG tstyd MUTS_ECOLI : 691- 698: eyslv Lm--D-EiGrG tstyd MUTS_HAEIN : 691- 700: ataqs LvliD-EiGrG tstyd MUTS_HAEIN : 693- 700: aqslv Li--D-EiGrG tstyd MUTS_SALTY : 690- 699: atens LvlmD-EiGrG tstyd MUTS_SALTY : 692- 699: enslv Lm--D-EiGrG tstyd REP3_MOUSE : 576- 584: nllrk Lp--DvErGlC siyhk REP3_MOUSE : 925- 934: aspqs LvilD-ElGrG tsthd SPE1_DROME : 738- 747: atdks LviiD-ElGrG tstye SWI4_SCHPO : 485- 493: kmlyr Lp--DlEkGlS riyyq S 19: 16.1802 15( 15) T-x(2)-G-x-R-x(0,1)-L Occurences: 15(15) DUG_HUMAN : 569- 576: ldhtk TsfGrRkL kkwvt HEXA_STRPN : 284- 290: ldetk TamGmR-L lrswi HEXA_STRPN : 284- 291: ldetk TamGmRlL rswih MSH1_YEAST : 397- 403: irrtv TpsGtR-L lsqwl MSH1_YEAST : 397- 404: irrtv TpsGtRlL sqwls MSH2_HUMAN : 335- 341: lnkck TpqGqR-L vnqwi MSH2_MOUSE : 335- 341: lnkck TaqGqR-L vnqwi MSH2_YEAST : 347- 353: lnhck TnaGvR-L lnewl MSH2_YEAST : 347- 354: lnhck TnaGvRlL newlk MSH3_YEAST : 478- 485: ldhtr TsfGlRmL rewil MSH4_YEAST : 298- 305: ldtts TkmGqRsL rnsil MUTS_AZOVI : 297- 303: idrcq TamGsR-L lgrwl MUTS_AZOVI : 297- 304: idrcq TamGsRlL grwln MUTS_ECOLI : 300- 307: ldctv TpmGsRmL krwlh MUTS_HAEIN : 300- 306: ldkcv TpmGsR-L lkrwi MUTS_HAEIN : 300- 307: ldkcv TpmGsRlL krwih MUTS_SALTY : 302- 309: ldctv TpmGsRmL krwlh REP3_MOUSE : 527- 534: ldhtk TsfGrRkL knwvt SPE1_DROME : 332- 338: ldhcr TpqGhR-L mgqwv SWI4_SCHPO : 436- 443: ldrty TrfGqRmL qrwlq T 20: 15.6802 15( 15) I-x(1,2)-P-x(3,4)-K-S Occurences: 15(15) DUG_HUMAN : 894- 903: ervmi ItgPnmggKS syikq HEXA_STRPN : 750- 758: tflhk Ie-PgpadKS ygihv MSH1_YEAST : 769- 778: dnlwv ItgPnmggKS tflrq MSH2_HUMAN : 667- 676: qmfhi ItgPnmggKS tyirq MSH2_MOUSE : 667- 676: qmfhi ItgPnmggKS tyirq MSH2_YEAST : 686- 695: gdfli ItgPnmggKS tyirq MSH3_YEAST : 818- 827: gkini ItgPnmggKS syirq MSH4_YEAST : 27- 35: nssns IskPstk-KS irnqk MUTS_AZOVI : 611- 620: trmli ItgPnmggKS tymrq MUTS_ECOLI : 612- 621: rrmli ItgPnmggKS tymrq MUTS_HAEIN : 614- 623: rhllv ItgPnmggKS tymrq MUTS_SALTY : 613- 622: rrmli ItgPnmggKS tymrq REP3_MOUSE : 848- 857: ervmi ItgPnmggKS syikq SPE1_DROME : 661- 670: cnmfi ItgPnmggKS tyirs SWI4_SCHPO : 757- 766: vrcll ItgPnmggKS sfvkq Number of patterns evaluated by Pratt:37870 Total running time: 87 seconds