------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file DNA_MISMATCH_REPAIR_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DNA_MISMATCH_REPAIR_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HEXB_STRPN 649 MLH1_HUMAN 756 MLH1_YEAST 769 MUTL_ECOLI 615 MUTL_HAEIN 629 MUTL_SALTY 618 PMS1_YEAST 904 Pratt run started at Thu Feb 6 19:20:11 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 33.3604 7( 7) G-F-R-G-E-A-L-x-S 2: 32.3604 7( 7) P-x(3,4)-D-V-N-V-x-P-x-K-x(1,2)-V 3: 29.1904 7( 7) F-R-G-E-A-L-x-S 4: 28.6904 7( 7) D-V-N-V-x-P-x-K-x(1,2)-V 5: 28.1904 7( 7) G-x(0,1)-T-x(2,3)-V-x(2)-L-F-x-N-x(3)-R 6: 27.1904 7( 7) G-T-x(3)-V-x(0,2)-L-x(0,2)-F-x-N-x(3)-R 7: 25.0203 7( 7) R-G-E-A-L-x-S 8: 24.5203 7( 7) V-N-V-x-P-x-K-x(1,2)-V 9: 24.0203 11( 7) I-x(1,3)-D-N-G-x-G-I 10: 24.0203 8( 7) A-x(1,3)-K-E-x(3)-N-x(2)-D-A 11: 23.5203 12( 7) V-x(0,2)-N-V-x-P-x-K-x(1,2)-V 12: 23.5203 10( 7) D-x(3,5)-I-x(3,4)-F-x(4)-L-x-S-I 13: 23.0203 9( 7) T-x(0,2)-V-x(2,4)-L-F-x-N-x(3)-R 14: 23.0203 7( 7) T-x(3)-V-x(0,2)-L-x(0,2)-F-x-N-x(3)-R 15: 20.8503 7( 7) V-x(2)-L-F-x-N-x(3)-R 16: 20.8503 7( 7) G-E-A-L-x-S 17: 20.8503 7( 7) D-N-G-x-G-I 18: 20.8503 7( 7) K-E-x(3)-N-x(2)-D-A 19: 20.3503 7( 7) N-V-x-P-x-K-x(1,2)-V 20: 19.8503 7( 7) I-x(3,4)-G-x(2)-G-x(2,3)-L-x(5)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 117.5273 7( 7) D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV]-x(2)-[KR]-[FH]-x-T-S-K-[IL]-x(3)-[ADEQ]-D-[LV]-x(2)-[IV]-x-[ST]-x-G-F-R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS] B 2: 114.2934 11( 7) I-x(1,3)-D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV]-x(2)-[KR]-[FH]-x-T-S-K-[IL]-x(3)-[ADEQ]-D-[LV]-x(2)-[IV]-x-[ST]-x-G-F-R-G-E-A-L-[APS]-S-[IL]-[ACS] C 3: 110.2698 7( 7) K-E-[LM]-[IMV]-[DE]-N-[ACS]-[IL]-D-A-x-[AS]-[NST]-x-[IV]-x-[IV]-x-[FIV]-[EK]-[DENR]-x-G-[AIL]-x(2)-[ILV]-[EQR]-x(2)-D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV]-x(2)-[KR]-[FH]-x-T D 4: 102.8465 8( 7) A-x(1,3)-K-E-[LM]-[IMV]-[DE]-N-[ACS]-[IL]-D-A-x-[AS]-[NST]-x-[IV]-x-[IV]-x-[FIV]-[EK]-[DENR]-x-G-[AIL]-x(2)-[ILV]-[EQR]-x(2)-D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV] E 5: 63.7206 7( 7) G-F-R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] F 6: 59.9127 10( 7) D-x(3,5)-I-x(3,4)-F-[KR]-[DG]-x-[AG]-L-x-S-I-[AES]-x-[SV]-[ADS]-x-[GLV]-[DT]-[GILV]-x-[DST]-x-[STV]-x(2)-[ADEGQ]-x(2)-[AG] G 7: 59.5506 7( 7) F-R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] H 8: 55.3805 7( 7) R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] I 9: 51.2104 7( 7) G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] J 10: 47.5942 7( 7) P-x(3,4)-D-V-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] K 11: 44.9086 7( 7) G-x(0,1)-T-x(2,3)-V-x-[DNQ]-L-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] L 12: 43.9799 7( 7) G-T-x-[ILV]-x-V-x(0,2)-L-x(0,2)-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] M 13: 43.9241 7( 7) D-V-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] N 14: 39.8099 7( 7) T-x-[ILV]-x-V-x(0,2)-L-x(0,2)-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] O 15: 39.7541 7( 7) V-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] P 16: 38.7541 12( 7) V-x(0,2)-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] Q 17: 37.5685 7( 7) V-x-[DNQ]-L-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] R 18: 37.5084 7( 7) I-x(3,4)-G-x(2)-G-x(2,3)-L-x-[ES]-[IV]-[ADS]-x-V-x(2)-[LV]-[NT]-[ILPV] S 19: 37.1480 9( 7) T-x(0,2)-V-x(2,4)-L-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] T 20: 35.5840 7( 7) N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 117.5273 7( 7) D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV]-x(2)-[KR]-[FH]-x-T-S-K-[IL]-x(3)-[ADEQ]-D-[LV]-x(2)-[IV]-x-[ST]-x-G-F-R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS] Occurences: 7(7) HEXB_STRPN : 59- 107: kvqit DNGhGIahDEveLAlrRHaTSKIknqADLfrIrTlGFRGEALPSIAsVS vltll MLH1_HUMAN : 63- 111: liqiq DNGtGIrkEDldIVceRFtTSKLqsfEDLasIsTyGFRGEALASIShVA hvtit MLH1_YEAST : 60- 108: vlqit DNGsGInkADlpILceRFtTSKLqkfEDLsqIqTyGFRGEALASIShVA rvtvt MUTL_ECOLI : 58- 106: lirir DNGcGIkkDElaLAlaRHaTSKIaslDDLeaIiSlGFRGEALASISsVS rltlt MUTL_HAEIN : 58- 106: lirir DNGcGIpkEElsLAlaRHaTSKIadlDDLeaIlSlGFRGEALASISsVS rltlt MUTL_SALTY : 58- 106: lirir DNGcGIkkEElaLAlaRHaTSKIaslDDLeaIiSlGFRGEALASISsVS rltlt PMS1_YEAST : 90- 138: siecs DNGdGIdpSNyeFLalKHyTSKIakfQDVakVqTlGFRGEALSSLCgIA klsvi B 2: 114.2934 11( 7) I-x(1,3)-D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV]-x(2)-[KR]-[FH]-x-T-S-K-[IL]-x(3)-[ADEQ]-D-[LV]-x(2)-[IV]-x-[ST]-x-G-F-R-G-E-A-L-[APS]-S-[IL]-[ACS] Occurences: 11(7) HEXB_STRPN : 57- 104: lkkvq It--DNGhGIahDEveLAlrRHaTSKIknqADLfrIrTlGFRGEALPSIA svsvl MLH1_HUMAN : 59- 108: gglkl IqiqDNGtGIrkEDldIVceRFtTSKLqsfEDLasIsTyGFRGEALASIS hvahv MLH1_HUMAN : 61- 108: lkliq Iq--DNGtGIrkEDldIVceRFtTSKLqsfEDLasIsTyGFRGEALASIS hvahv MLH1_YEAST : 58- 105: ikvlq It--DNGsGInkADlpILceRFtTSKLqkfEDLsqIqTyGFRGEALASIS hvarv MUTL_ECOLI : 54- 103: ggakl IrirDNGcGIkkDElaLAlaRHaTSKIaslDDLeaIiSlGFRGEALASIS svsrl MUTL_ECOLI : 56- 103: aklir Ir--DNGcGIkkDElaLAlaRHaTSKIaslDDLeaIiSlGFRGEALASIS svsrl MUTL_HAEIN : 54- 103: gganl IrirDNGcGIpkEElsLAlaRHaTSKIadlDDLeaIlSlGFRGEALASIS svsrl MUTL_HAEIN : 56- 103: anlir Ir--DNGcGIpkEElsLAlaRHaTSKIadlDDLeaIlSlGFRGEALASIS svsrl MUTL_SALTY : 54- 103: ggakl IrirDNGcGIkkEElaLAlaRHaTSKIaslDDLeaIiSlGFRGEALASIS svsrl MUTL_SALTY : 56- 103: aklir Ir--DNGcGIkkEElaLAlaRHaTSKIaslDDLeaIiSlGFRGEALASIS svsrl PMS1_YEAST : 86- 135: ygles IecsDNGdGIdpSNyeFLalKHyTSKIakfQDVakVqTlGFRGEALSSLC giakl C 3: 110.2698 7( 7) K-E-[LM]-[IMV]-[DE]-N-[ACS]-[IL]-D-A-x-[AS]-[NST]-x-[IV]-x-[IV]-x-[FIV]-[EK]-[DENR]-x-G-[AIL]-x(2)-[ILV]-[EQR]-x(2)-D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV]-x(2)-[KR]-[FH]-x-T Occurences: 7(7) HEXB_STRPN : 29- 78: pasvc KELVENAIDAgSSqIiIeIEEaGLkkVQitDNGhGIahDEveLAlrRHaT skikn MLH1_HUMAN : 33- 82: panai KEMIENCLDAkSTsIqViVKEgGLklIQiqDNGtGIrkEDldIVceRFtT sklqs MLH1_YEAST : 30- 79: pvnal KEMMENSIDAnATmIdIlVKEgGIkvLQitDNGsGInkADlpILceRFtT sklqk MUTL_ECOLI : 28- 77: pasvv KELVENSLDAgATrIdIdIERgGAklIRirDNGcGIkkDElaLAlaRHaT skias MUTL_HAEIN : 28- 77: pasvv KELVENSLDAgANkIqIdIENgGAnlIRirDNGcGIpkEElsLAlaRHaT skiad MUTL_SALTY : 28- 77: pasvv KELVENSLDAgATrVdIdIERgGAklIRirDNGcGIkkEElaLAlaRHaT skias PMS1_YEAST : 60- 109: lttav KELVDNSIDAnANqIeIiFKDyGLesIEcsDNGdGIdpSNyeFLalKHyT skiak D 4: 102.8465 8( 7) A-x(1,3)-K-E-[LM]-[IMV]-[DE]-N-[ACS]-[IL]-D-A-x-[AS]-[NST]-x-[IV]-x-[IV]-x-[FIV]-[EK]-[DENR]-x-G-[AIL]-x(2)-[ILV]-[EQR]-x(2)-D-N-G-x-G-I-x(2)-[ADES]-[DEN]-x(2)-[FIL]-[ALV] Occurences: 8(7) HEXB_STRPN : 25- 72: vierp AsvcKELVENAIDAgSSqIiIeIEEaGLkkVQitDNGhGIahDEveLA lrrha MLH1_HUMAN : 29- 76: viqrp AnaiKEMIENCLDAkSTsIqViVKEgGLklIQiqDNGtGIrkEDldIV cerft MLH1_HUMAN : 31- 76: qrpan Ai--KEMIENCLDAkSTsIqViVKEgGLklIQiqDNGtGIrkEDldIV cerft MLH1_YEAST : 28- 73: ispvn Al--KEMMENSIDAnATmIdIlVKEgGIkvLQitDNGsGInkADlpIL cerft MUTL_ECOLI : 24- 71: vverp AsvvKELVENSLDAgATrIdIdIERgGAklIRirDNGcGIkkDElaLA larha MUTL_HAEIN : 24- 71: vverp AsvvKELVENSLDAgANkIqIdIENgGAnlIRirDNGcGIpkEElsLA larha MUTL_SALTY : 24- 71: vverp AsvvKELVENSLDAgATrVdIdIERgGAklIRirDNGcGIkkEElaLA larha PMS1_YEAST : 58- 103: tdltt Av--KELVDNSIDAnANqIeIiFKDyGLesIEcsDNGdGIdpSNyeFL alkhy E 5: 63.7206 7( 7) G-F-R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] Occurences: 7(7) HEXB_STRPN : 94- 115: rirtl GFRGEALPSIAsVSvLTLlTaV dgash MLH1_HUMAN : 98- 119: sisty GFRGEALASIShVAhVTItTkT adgkc MLH1_YEAST : 95- 116: qiqty GFRGEALASIShVArVTVtTkV kedrc MUTL_ECOLI : 93- 114: aiisl GFRGEALASISsVSrLTLtSrT aeqqe MUTL_HAEIN : 93- 114: ailsl GFRGEALASISsVSrLTLtSrT eeqte MUTL_SALTY : 93- 114: aiisl GFRGEALASISsVSrLTLtSrT aeqae PMS1_YEAST : 125- 146: kvqtl GFRGEALSSLCgIAkLSViTtT sppka F 6: 59.9127 10( 7) D-x(3,5)-I-x(3,4)-F-[KR]-[DG]-x-[AG]-L-x-S-I-[AES]-x-[SV]-[ADS]-x-[GLV]-[DT]-[GILV]-x-[DST]-x-[STV]-x(2)-[ADEGQ]-x(2)-[AG] Occurences: 10(7) HEXB_STRPN : 86- 121: iknqa Dlfr--IrtlgFRGeALpSIAsVSvLTLlTaVdgAshG tklva MLH1_HUMAN : 90- 125: lqsfe Dlas--IstygFRGeALaSIShVAhVTItTkTadGkcA yrasy MLH1_YEAST : 87- 122: lqkfe Dlsq--IqtygFRGeALaSIShVArVTVtTkVkeDrcA wrvsy MUTL_ECOLI : 84- 120: kiasl DdleaiIslg-FRGeALaSISsVSrLTLtSrTaeQqeA wqaya MUTL_ECOLI : 84- 120: kiasl Ddlea-IislgFRGeALaSISsVSrLTLtSrTaeQqeA wqaya MUTL_ECOLI : 85- 120: iasld Dleai-Islg-FRGeALaSISsVSrLTLtSrTaeQqeA wqaya MUTL_ECOLI : 85- 120: iasld Dlea--IislgFRGeALaSISsVSrLTLtSrTaeQqeA wqaya MUTL_HAEIN : 84- 120: kiadl Ddlea-IlslgFRGeALaSISsVSrLTLtSrTeeQteA wqvya MUTL_HAEIN : 85- 120: iadld Dlea--IlslgFRGeALaSISsVSrLTLtSrTeeQteA wqvya MUTL_SALTY : 84- 120: kiasl DdleaiIslg-FRGeALaSISsVSrLTLtSrTaeQaeA wqaya MUTL_SALTY : 84- 120: kiasl Ddlea-IislgFRGeALaSISsVSrLTLtSrTaeQaeA wqaya MUTL_SALTY : 85- 120: iasld Dleai-Islg-FRGeALaSISsVSrLTLtSrTaeQaeA wqaya MUTL_SALTY : 85- 120: iasld Dlea--IislgFRGeALaSISsVSrLTLtSrTaeQaeA wqaya PMS1_YEAST : 68- 104: vdnsi DananqIeii-FKDyGLeSIEcSDnGDGiDpSnyEflA lkhyt G 7: 59.5506 7( 7) F-R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] Occurences: 7(7) HEXB_STRPN : 95- 115: irtlg FRGEALPSIAsVSvLTLlTaV dgash MLH1_HUMAN : 99- 119: istyg FRGEALASIShVAhVTItTkT adgkc MLH1_YEAST : 96- 116: iqtyg FRGEALASIShVArVTVtTkV kedrc MUTL_ECOLI : 94- 114: iislg FRGEALASISsVSrLTLtSrT aeqqe MUTL_HAEIN : 94- 114: ilslg FRGEALASISsVSrLTLtSrT eeqte MUTL_SALTY : 94- 114: iislg FRGEALASISsVSrLTLtSrT aeqae PMS1_YEAST : 126- 146: vqtlg FRGEALSSLCgIAkLSViTtT sppka H 8: 55.3805 7( 7) R-G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] Occurences: 7(7) HEXB_STRPN : 96- 115: rtlgf RGEALPSIAsVSvLTLlTaV dgash MLH1_HUMAN : 100- 119: stygf RGEALASIShVAhVTItTkT adgkc MLH1_YEAST : 97- 116: qtygf RGEALASIShVArVTVtTkV kedrc MUTL_ECOLI : 95- 114: islgf RGEALASISsVSrLTLtSrT aeqqe MUTL_HAEIN : 95- 114: lslgf RGEALASISsVSrLTLtSrT eeqte MUTL_SALTY : 95- 114: islgf RGEALASISsVSrLTLtSrT aeqae PMS1_YEAST : 127- 146: qtlgf RGEALSSLCgIAkLSViTtT sppka I 9: 51.2104 7( 7) G-E-A-L-[APS]-S-[IL]-[ACS]-x-[IV]-[AS]-x-[LV]-[ST]-[ILV]-x-[ST]-x-[TV] Occurences: 7(7) HEXB_STRPN : 97- 115: tlgfr GEALPSIAsVSvLTLlTaV dgash MLH1_HUMAN : 101- 119: tygfr GEALASIShVAhVTItTkT adgkc MLH1_YEAST : 98- 116: tygfr GEALASIShVArVTVtTkV kedrc MUTL_ECOLI : 96- 114: slgfr GEALASISsVSrLTLtSrT aeqqe MUTL_HAEIN : 96- 114: slgfr GEALASISsVSrLTLtSrT eeqte MUTL_SALTY : 96- 114: slgfr GEALASISsVSrLTLtSrT aeqae PMS1_YEAST : 128- 146: tlgfr GEALSSLCgIAkLSViTtT sppka J 10: 47.5942 7( 7) P-x(3,4)-D-V-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] Occurences: 7(7) HEXB_STRPN : 292- 318: hihid Pyla-DVNVhPTKqeVrIskEKeLmtlV seaia MLH1_HUMAN : 300- 326: sleis Pqnv-DVNVhPTKheVhFlhEEsIlerV qqhie MLH1_YEAST : 300- 326: givid Paav-DVNVhPTKreVrFlsQDeIiekI anqlh MUTL_ECOLI : 296- 322: yleid Phqv-DVNVhPAKheVrFhqSRlVhdfI yqgvl MUTL_HAEIN : 295- 321: fidln Phdv-DVNVhPTKheVrFhqQRlIhdfI yegis MUTL_SALTY : 296- 322: yleid Phqv-DVNVhPAKheVrFhqSRlVhdfI yqgvl PMS1_YEAST : 352- 378: lnlel PmsliDVNVtPDKr-ViLlhNErAvidI fkttl K 11: 44.9086 7( 7) G-x(0,1)-T-x(2,3)-V-x-[DNQ]-L-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] Occurences: 7(7) HEXB_STRPN : 142- 161: atspv G-TkvcVeDLFFNtPARlKyM ksqqa MLH1_HUMAN : 147- 166: cagnq G-TqitVeDLFYNiATRrKaL knpse MLH1_YEAST : 144- 163: vagkd GtTil-VeDLFFNiPSRlRaL rshnd MLH1_YEAST : 144- 163: vagkd G-TtilVeDLFFNiPSRlRaL rshnd MUTL_ECOLI : 142- 161: aahpv GtTle-VlDLFYNtPARrKfL rtekt MUTL_ECOLI : 142- 161: aahpv G-TtleVlDLFYNtPARrKfL rtekt MUTL_HAEIN : 142- 161: ashpv GtTve-VaNLFFNtPARrKfL rtdkt MUTL_HAEIN : 142- 161: ashpv G-TtveVaNLFFNtPARrKfL rtdkt MUTL_SALTY : 142- 161: aahpv GtTle-VlDLFYNtPARrKfM rtekt MUTL_SALTY : 142- 161: aahpv G-TtleVlDLFYNtPARrKfM rtekt PMS1_YEAST : 173- 192: tsrnk GtTvl-VsQLFHNlPVRqKeF sktfk PMS1_YEAST : 173- 192: tsrnk G-TtvlVsQLFHNlPVRqKeF sktfk L 12: 43.9799 7( 7) G-T-x-[ILV]-x-V-x(0,2)-L-x(0,2)-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] Occurences: 7(7) HEXB_STRPN : 142- 161: atspv GTkVcVedL--FFNtPARlKyM ksqqa MLH1_HUMAN : 147- 166: cagnq GTqItVedL--FYNiATRrKaL knpse MLH1_YEAST : 144- 163: vagkd GTtIlVedL--FFNiPSRlRaL rshnd MUTL_ECOLI : 142- 161: aahpv GTtLeVldL--FYNtPARrKfL rtekt MUTL_ECOLI : 142- 161: aahpv GTtLeV--LdlFYNtPARrKfL rtekt MUTL_HAEIN : 142- 161: ashpv GTtVeVanL--FFNtPARrKfL rtdkt MUTL_SALTY : 142- 161: aahpv GTtLeVldL--FYNtPARrKfM rtekt MUTL_SALTY : 142- 161: aahpv GTtLeV--LdlFYNtPARrKfM rtekt PMS1_YEAST : 173- 192: tsrnk GTtVlVsqL--FHNlPVRqKeF sktfk M 13: 43.9241 7( 7) D-V-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] Occurences: 7(7) HEXB_STRPN : 296- 318: dpyla DVNVhPTKqeVrIskEKeLmtlV seaia MLH1_HUMAN : 304- 326: spqnv DVNVhPTKheVhFlhEEsIlerV qqhie MLH1_YEAST : 304- 326: dpaav DVNVhPTKreVrFlsQDeIiekI anqlh MUTL_ECOLI : 300- 322: dphqv DVNVhPAKheVrFhqSRlVhdfI yqgvl MUTL_HAEIN : 299- 321: nphdv DVNVhPTKheVrFhqQRlIhdfI yegis MUTL_SALTY : 300- 322: dphqv DVNVhPAKheVrFhqSRlVhdfI yqgvl PMS1_YEAST : 357- 378: pmsli DVNVtPDKr-ViLlhNErAvidI fkttl N 14: 39.8099 7( 7) T-x-[ILV]-x-V-x(0,2)-L-x(0,2)-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] Occurences: 7(7) HEXB_STRPN : 143- 161: tspvg TkVcVedL--FFNtPARlKyM ksqqa MLH1_HUMAN : 148- 166: agnqg TqItVedL--FYNiATRrKaL knpse MLH1_YEAST : 145- 163: agkdg TtIlVedL--FFNiPSRlRaL rshnd MUTL_ECOLI : 143- 161: ahpvg TtLeVldL--FYNtPARrKfL rtekt MUTL_ECOLI : 143- 161: ahpvg TtLeV--LdlFYNtPARrKfL rtekt MUTL_HAEIN : 143- 161: shpvg TtVeVanL--FFNtPARrKfL rtdkt MUTL_SALTY : 143- 161: ahpvg TtLeVldL--FYNtPARrKfM rtekt MUTL_SALTY : 143- 161: ahpvg TtLeV--LdlFYNtPARrKfM rtekt PMS1_YEAST : 174- 192: srnkg TtVlVsqL--FHNlPVRqKeF sktfk O 15: 39.7541 7( 7) V-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] Occurences: 7(7) HEXB_STRPN : 297- 318: pylad VNVhPTKqeVrIskEKeLmtlV seaia MLH1_HUMAN : 305- 326: pqnvd VNVhPTKheVhFlhEEsIlerV qqhie MLH1_YEAST : 305- 326: paavd VNVhPTKreVrFlsQDeIiekI anqlh MUTL_ECOLI : 301- 322: phqvd VNVhPAKheVrFhqSRlVhdfI yqgvl MUTL_HAEIN : 300- 321: phdvd VNVhPTKheVrFhqQRlIhdfI yegis MUTL_SALTY : 301- 322: phqvd VNVhPAKheVrFhqSRlVhdfI yqgvl PMS1_YEAST : 358- 378: mslid VNVtPDKr-ViLlhNErAvidI fkttl P 16: 38.7541 12( 7) V-x(0,2)-N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] Occurences: 12(7) HEXB_STRPN : 297- 318: pylad V--NVhPTKqeVrIskEKeLmtlV seaia MLH1_HUMAN : 303- 326: ispqn VdvNVhPTKheVhFlhEEsIlerV qqhie MLH1_HUMAN : 305- 326: pqnvd V--NVhPTKheVhFlhEEsIlerV qqhie MLH1_YEAST : 303- 326: idpaa VdvNVhPTKreVrFlsQDeIiekI anqlh MLH1_YEAST : 305- 326: paavd V--NVhPTKreVrFlsQDeIiekI anqlh MUTL_ECOLI : 299- 322: idphq VdvNVhPAKheVrFhqSRlVhdfI yqgvl MUTL_ECOLI : 301- 322: phqvd V--NVhPAKheVrFhqSRlVhdfI yqgvl MUTL_HAEIN : 298- 321: lnphd VdvNVhPTKheVrFhqQRlIhdfI yegis MUTL_HAEIN : 300- 321: phdvd V--NVhPTKheVrFhqQRlIhdfI yegis MUTL_SALTY : 299- 322: idphq VdvNVhPAKheVrFhqSRlVhdfI yqgvl MUTL_SALTY : 301- 322: phqvd V--NVhPAKheVrFhqSRlVhdfI yqgvl PMS1_YEAST : 358- 378: mslid V--NVtPDKr-ViLlhNErAvidI fkttl Q 17: 37.5685 7( 7) V-x-[DNQ]-L-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] Occurences: 7(7) HEXB_STRPN : 147- 161: gtkvc VeDLFFNtPARlKyM ksqqa MLH1_HUMAN : 152- 166: gtqit VeDLFYNiATRrKaL knpse MLH1_YEAST : 149- 163: gttil VeDLFFNiPSRlRaL rshnd MUTL_ECOLI : 147- 161: gttle VlDLFYNtPARrKfL rtekt MUTL_HAEIN : 147- 161: gttve VaNLFFNtPARrKfL rtdkt MUTL_SALTY : 147- 161: gttle VlDLFYNtPARrKfM rtekt PMS1_YEAST : 178- 192: gttvl VsQLFHNlPVRqKeF sktfk R 18: 37.5084 7( 7) I-x(3,4)-G-x(2)-G-x(2,3)-L-x-[ES]-[IV]-[ADS]-x-V-x(2)-[LV]-[NT]-[ILPV] Occurences: 7(7) HEXB_STRPN : 90- 111: adlfr Irtl-GfrGea-LpSIAsVsvLTL ltavd MLH1_HUMAN : 94- 115: edlas Isty-GfrGea-LaSIShVahVTI ttkta MLH1_YEAST : 91- 112: edlsq Iqty-GfrGea-LaSIShVarVTV ttkvk MUTL_ECOLI : 89- 110: ddlea Iisl-GfrGea-LaSISsVsrLTL tsrta MUTL_HAEIN : 89- 110: ddlea Ilsl-GfrGea-LaSISsVsrLTL tsrte MUTL_SALTY : 89- 110: ddlea Iisl-GfrGea-LaSISsVsrLTL tsrta PMS1_YEAST : 246- 269: smrkn IssvfGagGmrgLeEVDlVldLNP fknrm S 19: 37.1480 9( 7) T-x(0,2)-V-x(2,4)-L-F-[FHY]-N-x-[AP]-[ASTV]-R-x-[KR]-x-[FLM] Occurences: 9(7) HEXB_STRPN : 143- 161: tspvg Tk-VcvedLFFNtPARlKyM ksqqa MLH1_HUMAN : 151- 166: qgtqi T--Ved--LFYNiATRrKaL knpse MLH1_YEAST : 146- 163: gkdgt TilVed--LFFNiPSRlRaL rshnd MUTL_ECOLI : 144- 161: hpvgt TleVld--LFYNtPARrKfL rtekt MUTL_HAEIN : 143- 161: shpvg Tt-VevanLFFNtPARrKfL rtdkt MUTL_HAEIN : 144- 161: hpvgt TveVan--LFFNtPARrKfL rtdkt MUTL_HAEIN : 144- 161: hpvgt T--VevanLFFNtPARrKfL rtdkt MUTL_SALTY : 144- 161: hpvgt TleVld--LFYNtPARrKfM rtekt PMS1_YEAST : 174- 192: srnkg Tt-VlvsqLFHNlPVRqKeF sktfk PMS1_YEAST : 175- 192: rnkgt TvlVsq--LFHNlPVRqKeF sktfk PMS1_YEAST : 175- 192: rnkgt T--VlvsqLFHNlPVRqKeF sktfk T 20: 35.5840 7( 7) N-V-x-P-[ADT]-K-x(1,2)-V-x-[FIL]-x(2)-[ENQS]-[DEKR]-x-[AILV]-x(3)-[IV] Occurences: 7(7) HEXB_STRPN : 298- 318: yladv NVhPTKqeVrIskEKeLmtlV seaia MLH1_HUMAN : 306- 326: qnvdv NVhPTKheVhFlhEEsIlerV qqhie MLH1_YEAST : 306- 326: aavdv NVhPTKreVrFlsQDeIiekI anqlh MUTL_ECOLI : 302- 322: hqvdv NVhPAKheVrFhqSRlVhdfI yqgvl MUTL_HAEIN : 301- 321: hdvdv NVhPTKheVrFhqQRlIhdfI yegis MUTL_SALTY : 302- 322: hqvdv NVhPAKheVrFhqSRlVhdfI yqgvl PMS1_YEAST : 359- 378: slidv NVtPDKr-ViLlhNErAvidI fkttl Number of patterns evaluated by Pratt:34494 Total running time: 31 seconds