------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file DNA_LIGASE_A2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DNA_LIGASE_A2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DNLI_ASFB7 419 DNLI_ASFM2 419 DNLI_BPT3 346 DNLI_BPT4 487 DNLI_BPT6 487 DNLI_BPT7 359 DNLI_DESAM 600 DNLI_HUMAN 919 DNLI_MOUSE 916 DNLI_SCHPO 768 DNLI_VACCC 552 DNLI_VACCV 552 DNLI_VARV 552 DNLI_YEAST 755 Pratt run started at Thu Feb 6 19:19:18 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 14( 14) K-x(2)-G-x-R 2: 12.0102 14( 14) F-x(2)-F-x(4,5)-D 3: 12.0102 19( 14) L-x(1,2)-G-x-L 4: 12.0102 14( 14) K-x(3,4)-K-x(3)-E 5: 12.0102 18( 14) Y-x(2,3)-G-K 6: 12.0102 29( 14) I-x-K-x(1,2)-K 7: 12.0102 17( 14) E-x-L-x(1,2)-K 8: 12.0102 23( 14) L-x(4)-L-x(3,4)-L 9: 12.0102 31( 14) L-x(3,4)-L-x(3)-L 10: 12.0102 23( 14) K-x(4,5)-L-x(4)-L 11: 12.0102 19( 14) L-x-G-x(1,2)-L 12: 12.0102 23( 14) E-x(4,5)-K-x-L 13: 11.5102 15( 14) G-x(1,2)-D-x(3,4)-K 14: 11.5102 18( 14) K-x(4,5)-E-x(1,2)-N 15: 11.5102 30( 14) S-x(2,3)-K-x(3,4)-E 16: 11.5102 17( 14) D-G-x(3,5)-H 17: 11.5102 18( 14) E-x(1,2)-T-x(4,5)-L 18: 11.5102 27( 14) S-x(1,3)-K-x(3)-E 19: 11.5102 22( 14) A-x(1,3)-S-x(2)-L 20: 11.5102 24( 14) D-x(1,3)-I-x(3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 25.1776 14( 14) K-x-[DN]-G-x-R-[ACGV]-x-[AIV]-x(3)-[EGN]-[DGNTV] B 2: 13.6451 17( 14) L-[ADENST]-G-x(1,2)-L C 3: 12.0102 14( 14) F-x(2)-F-x(4,5)-D D 4: 12.0102 19( 14) L-x(1,2)-G-x-L E 5: 12.0102 14( 14) K-x(3,4)-K-x(3)-E F 6: 12.0102 18( 14) Y-x(2,3)-G-K G 7: 12.0102 29( 14) I-x-K-x(1,2)-K H 8: 12.0102 17( 14) E-x-L-x(1,2)-K I 9: 12.0102 23( 14) L-x(4)-L-x(3,4)-L J 10: 12.0102 31( 14) L-x(3,4)-L-x(3)-L K 11: 12.0102 23( 14) K-x(4,5)-L-x(4)-L L 12: 12.0102 23( 14) E-x(4,5)-K-x-L M 13: 11.5102 15( 14) G-x(1,2)-D-x(3,4)-K N 14: 11.5102 18( 14) K-x(4,5)-E-x(1,2)-N O 15: 11.5102 30( 14) S-x(2,3)-K-x(3,4)-E P 16: 11.5102 17( 14) D-G-x(3,5)-H Q 17: 11.5102 18( 14) E-x(1,2)-T-x(4,5)-L R 18: 11.5102 27( 14) S-x(1,3)-K-x(3)-E S 19: 11.5102 22( 14) A-x(1,3)-S-x(2)-L T 20: 11.5102 24( 14) D-x(1,3)-I-x(3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 25.1776 14( 14) K-x-[DN]-G-x-R-[ACGV]-x-[AIV]-x(3)-[EGN]-[DGNTV] Occurences: 14(14) DNLI_ASFB7 : 151- 164: pivqr KrNGvRAvAcqqGD gcill DNLI_ASFM2 : 151- 164: pivhg KrNGvRAvAcqqGD gsill DNLI_BPT3 : 34- 47: liadc KyDGvRGnIvvdNV aeaaw DNLI_BPT4 : 159- 172: afaql KaDGaRCfAevrGD elddv DNLI_BPT6 : 159- 172: afaql KaDGaRCfAevrGD elddv DNLI_BPT7 : 34- 47: liaei KyDGvRGnIcvdNT ansyw DNLI_DESAM : 261- 274: alvdy KyDGeRGqIhkaGD kifif DNLI_HUMAN : 568- 581: ftcey KyDGqRAqIhalEG gevki DNLI_MOUSE : 566- 579: ftcey KyDGqRAqIhvlEG gevki DNLI_SCHPO : 416- 429: ftcey KyDGeRAqVhftED gkfyv DNLI_VACCC : 231- 244: mfaev KyDGeRVqVhknNN efaff DNLI_VACCV : 231- 244: mfaev KyDGeRVqVhknNN efaff DNLI_VARV : 231- 244: mfaev KyDGeRVqVhknNN efaff DNLI_YEAST : 419- 432: ftsey KyDGeRAqVhllND gtmri B 2: 13.6451 17( 14) L-[ADENST]-G-x(1,2)-L Occurences: 17(14) DNLI_ASFB7 : 200- 204: dvrvy LDGe-L ylhrk DNLI_ASFM2 : 200- 204: dvrvy LDGe-L ylhrk DNLI_BPT3 : 90- 94: pdgfm LDGe-L mvkgv DNLI_BPT4 : 343- 348: yidqg LEGiiL knidg DNLI_BPT6 : 343- 348: yidqg LEGiiL knidg DNLI_BPT7 : 90- 94: kdgfm LDGe-L mvkgv DNLI_DESAM : 148- 152: ikirl LAGl-L kdasp DNLI_HUMAN : 446- 450: fiars LSGr-L rlgla DNLI_HUMAN : 665- 670: fdliy LNGesL vrepl DNLI_MOUSE : 444- 448: yiarc LSGr-L rlglg DNLI_MOUSE : 663- 668: fdliy LNGesL vrqpl DNLI_SCHPO : 306- 310: ylira LEGk-L rlqla DNLI_SCHPO : 513- 518: fdily LNGqpL letpl DNLI_VACCC : 376- 381: altrk LEGlvL kding DNLI_VACCV : 376- 381: altrk LEGlvL kding DNLI_VARV : 376- 381: altrk LEGlvL kding DNLI_YEAST : 5- 9: mrrl LTGc-L lssar DNLI_YEAST : 5- 10: mrrl LTGclL ssarp C 3: 12.0102 14( 14) F-x(2)-F-x(4,5)-D Occurences: 14(14) DNLI_ASFB7 : 229- 238: sselh FyvFdcfwsD qlqmp DNLI_ASFM2 : 229- 238: sselh FyvFdcfwsD qlqmp DNLI_BPT3 : 332- 340: lrhps FekFrgte-D npqek DNLI_BPT4 : 152- 161: nknik FpaFaqlkaD garcf DNLI_BPT6 : 152- 161: nknik FpaFaqlkaD garcf DNLI_BPT7 : 345- 353: lrhps FvmFrgte-D npqek DNLI_DESAM : 559- 568: glsir FprFirwrpD ksped DNLI_HUMAN : 872- 881: gislr FprFirvreD kqpeq DNLI_MOUSE : 870- 879: gislr FprFirvrkD kqpeq DNLI_SCHPO : 723- 732: gislr FprFirireD kswed DNLI_VACCC : 525- 534: gisir FprFtrireD ktwke DNLI_VACCV : 525- 534: gisir FprFtrireD ktwke DNLI_VARV : 525- 534: gisir FprFtrireD ktwke DNLI_YEAST : 722- 731: gvslr FprFlrireD kgved D 4: 12.0102 19( 14) L-x(1,2)-G-x-L Occurences: 19(14) DNLI_ASFB7 : 200- 204: dvrvy Ld-GeL ylhrk DNLI_ASFM2 : 200- 204: dvrvy Ld-GeL ylhrk DNLI_BPT3 : 90- 94: pdgfm Ld-GeL mvkgv DNLI_BPT3 : 278- 283: gfsvl LetGrL vdann DNLI_BPT4 : 213- 218: hpegv LidGeL vyheq DNLI_BPT6 : 213- 218: hpegv LidGeL vyheq DNLI_BPT7 : 90- 94: kdgfm Ld-GeL mvkgv DNLI_BPT7 : 139- 144: kvpfk LhtGhL hikly DNLI_BPT7 : 272- 277: gfevl LesGrL vnatn DNLI_DESAM : 147- 152: dikir LlaGlL kdasp DNLI_DESAM : 148- 152: ikirl La-GlL kdasp DNLI_HUMAN : 446- 450: fiars Ls-GrL rlgla DNLI_MOUSE : 444- 448: yiarc Ls-GrL rlglg DNLI_SCHPO : 306- 310: ylira Le-GkL rlqla DNLI_VACCC : 294- 299: ehnvp LpfGsL gihkk DNLI_VACCV : 294- 299: ehnvp LpfGsL gihkk DNLI_VARV : 294- 299: ehnvq LpfGsL gihkk DNLI_YEAST : 4- 9: mrr LltGcL lssar DNLI_YEAST : 5- 9: mrrl Lt-GcL lssar E 5: 12.0102 14( 14) K-x(3,4)-K-x(3)-E Occurences: 14(14) DNLI_ASFB7 : 282- 291: ealrl KaqfiKegyE gaivr DNLI_ASFM2 : 282- 291: ealrl KtqfiKegyE gaivr DNLI_BPT3 : 239- 248: ykrgk KsgwwKlkpE ceadg DNLI_BPT4 : 194- 203: gldll KeeliKmtaE arqih DNLI_BPT6 : 194- 203: gldll KeeliKmtaE arqih DNLI_BPT7 : 233- 242: ykrgk KsgwwKmkpE neadg DNLI_DESAM : 585- 593: ilemy Ksql-KkieE kpsdq DNLI_HUMAN : 236- 245: fftpr KpavkKevkE eepga DNLI_MOUSE : 146- 154: nedkt Ktak-KrkkE eetpk DNLI_SCHPO : 64- 73: tsekr KvesvKlvdE skhnn DNLI_VACCC : 177- 186: ydvfr KsnnlKeiiE nsskq DNLI_VACCV : 177- 186: ydvfr KsnnlKeiiE naskq DNLI_VARV : 177- 186: ydvfr KsnnlKeiiE neskq DNLI_YEAST : 60- 68: gtpsp Kkss-KhmlE ermdn F 6: 12.0102 18( 14) Y-x(2,3)-G-K Occurences: 18(14) DNLI_ASFB7 : 330- 334: filvd Ytq-GK kgkdl DNLI_ASFM2 : 330- 334: filvd Ytq-GK kgkdl DNLI_BPT3 : 234- 238: dpqgi Ykr-GK ksgww DNLI_BPT4 : 93- 98: eeltg YitdGK kddve DNLI_BPT4 : 431- 435: menqn Yyi-GK ilece DNLI_BPT6 : 93- 98: eeltg YitdGK kddve DNLI_BPT6 : 431- 435: menqn Yyi-GK ilece DNLI_BPT7 : 228- 232: dpmci Ykr-GK ksgww DNLI_DESAM : 43- 48: idkvv YiiqGK lwpdf DNLI_HUMAN : 765- 770: vviga YlgrGK ragry DNLI_MOUSE : 763- 768: vviga YlgrGK ragry DNLI_SCHPO : 614- 619: iviga YygkGK rtsvy DNLI_SCHPO : 615- 619: vigay Ygk-GK rtsvy DNLI_VACCC : 388- 392: dingv Yep-GK rrwlk DNLI_VACCV : 388- 392: dingv Yep-GK rrwlk DNLI_VARV : 388- 392: dingv Yep-GK rrwlk DNLI_YEAST : 617- 622: cvlga YygrGK rtgty DNLI_YEAST : 618- 622: vlgay Ygr-GK rtgty G 7: 12.0102 29( 14) I-x-K-x(1,2)-K Occurences: 29(14) DNLI_ASFB7 : 183- 188: lgldn IkKelK qlylf DNLI_ASFB7 : 254- 258: qlltn IfKq-K edltf DNLI_ASFM2 : 183- 188: lgldn IkKelK qlylf DNLI_ASFM2 : 254- 258: qlltn IfKq-K edltf DNLI_BPT3 : 233- 238: kdpqg IyKrgK ksgww DNLI_BPT4 : 47- 52: glqyy IkKwpK pgiat DNLI_BPT4 : 146- 151: ydekg InKniK fpafa DNLI_BPT6 : 47- 52: glqyy IkKwpK pgiat DNLI_BPT6 : 146- 151: ydekg InKniK fpafa DNLI_BPT7 : 129- 134: lfvep IrKkdK vpfkl DNLI_BPT7 : 227- 232: kdpmc IyKrgK ksgww DNLI_DESAM : 81- 86: vsdde IeKmyK svgdl DNLI_DESAM : 297- 302: dvaey IsKyvK gnefi DNLI_HUMAN : 605- 609: diisr IpKi-K lpsvt DNLI_MOUSE : 603- 607: diisr IpKi-K hpsvt DNLI_SCHPO : 666- 670: lkdiv IsKk-K dfyah DNLI_VACCC : 150- 155: cvvml IdKdlK ikagp DNLI_VACCC : 268- 273: ylkey IpKafK katsi DNLI_VACCC : 301- 305: fgslg IhKk-K eykns DNLI_VACCC : 471- 476: ltmik InKdpK kipew DNLI_VACCV : 150- 155: cvvml IdKdlK ikagp DNLI_VACCV : 268- 273: ylkey IpKafK katsi DNLI_VACCV : 301- 305: fgslg IhKk-K eykns DNLI_VACCV : 471- 476: ltmvk InKdpK kipew DNLI_VARV : 150- 155: cvvml IdKdlK ikagp DNLI_VARV : 268- 273: ylkey IpKafK katsi DNLI_VARV : 301- 305: fgslg IhKk-K eykns DNLI_VARV : 471- 476: ltmvk InKdpK kipew DNLI_YEAST : 522- 527: nderl InKslK errey H 8: 12.0102 17( 14) E-x-L-x(1,2)-K Occurences: 17(14) DNLI_ASFB7 : 277- 282: vknvd EaLrlK aqfik DNLI_ASFM2 : 277- 282: vkned EaLrlK tqfik DNLI_BPT3 : 223- 228: raegh EgLivK dpqgi DNLI_BPT4 : 195- 199: ldllk EeLi-K mtaea DNLI_BPT6 : 195- 199: ldllk EeLi-K mtaea DNLI_BPT7 : 217- 222: raegh EgLivK dpmci DNLI_DESAM : 247- 251: lsdpa EmLs-K vgnia DNLI_HUMAN : 720- 725: vkdsc EgLmvK tldvd DNLI_MOUSE : 718- 723: vkdsc EgLmvK tldvd DNLI_SCHPO : 568- 573: vkdsc EgLmvK mlegp DNLI_VACCC : 377- 382: ltrkl EgLvlK dingv DNLI_VACCV : 377- 382: ltrkl EgLvlK dingv DNLI_VARV : 377- 382: ltrkl EgLvlK dingv DNLI_YEAST : 211- 216: elglg EnLlmK tiset DNLI_YEAST : 519- 524: lcynd ErLinK slker DNLI_YEAST : 531- 535: lkerr EyLt-K vtkvv DNLI_YEAST : 571- 576: vnhsc EgLmvK mlegp I 9: 12.0102 23( 14) L-x(4)-L-x(3,4)-L Occurences: 23(14) DNLI_ASFB7 : 377- 387: kltpa LfkkhLygkeL tveya DNLI_ASFM2 : 377- 387: kltpa LfkkhLygkeL tveya DNLI_BPT3 : 145- 154: kfefh LdpkrLsvr-L yavmp DNLI_BPT4 : 188- 197: agney LgldlLkee-L ikmta DNLI_BPT6 : 188- 197: agney LgldlLkee-L ikmta DNLI_BPT7 : 139- 148: kvpfk LhtghLhik-L yailp DNLI_DESAM : 20- 29: kissr LqltsLlad-L fkktd DNLI_DESAM : 49- 59: iiqgk LwpdfLgmpeL gigek DNLI_HUMAN : 322- 331: rsvva LsppdLlpv-L ylsln DNLI_HUMAN : 328- 338: sppdl LpvlyLslnhL gppqq DNLI_HUMAN : 665- 675: fdliy LngesLvrepL srrrq DNLI_MOUSE : 320- 329: psvva LsppdLlpv-L ylsln DNLI_MOUSE : 326- 336: sppdl LpvlyLslnrL gppqq DNLI_MOUSE : 663- 673: fdliy LngesLvrqpL srrrq DNLI_SCHPO : 188- 198: hpsdl LacvyLsinkL gpdys DNLI_SCHPO : 259- 268: fkpaa LtipfLfds-L kkiaq DNLI_SCHPO : 358- 368: dvycq LpsydLivphL iehgl DNLI_SCHPO : 363- 373: lpsyd LivphLiehgL gtlre DNLI_SCHPO : 513- 523: fdily LngqpLletpL nerrk DNLI_VACCC : 39- 48: rddky LiiklLlpg-L ddriy DNLI_VACCV : 39- 48: rddky LiiklLlpg-L ddriy DNLI_VARV : 39- 48: rddky LiiklLlpg-L ddriy DNLI_YEAST : 281- 291: gkdsq LkkmkLikrmL tackg J 10: 12.0102 31( 14) L-x(3,4)-L-x(3)-L Occurences: 31(14) DNLI_ASFB7 : 369- 377: adrya Lfqk-LtpaL fkkhl DNLI_ASFM2 : 369- 377: adrya Lfqk-LtpaL fkkhl DNLI_BPT3 : 145- 154: kfefh LdpkrLsvrL yavmp DNLI_BPT4 : 188- 197: agney LgldlLkeeL ikmta DNLI_BPT6 : 188- 197: agney LgldlLkeeL ikmta DNLI_BPT7 : 139- 148: kvpfk LhtghLhikL yailp DNLI_BPT7 : 144- 152: lhtgh Lhik-LyaiL plhiv DNLI_DESAM : 20- 29: kissr LqltsLladL fkktd DNLI_HUMAN : 322- 331: rsvva LsppdLlpvL ylsln DNLI_HUMAN : 327- 335: lsppd Llpv-LylsL nhlgp DNLI_HUMAN : 446- 454: fiars Lsgr-LrlgL aeqsv DNLI_MOUSE : 320- 329: psvva LsppdLlpvL ylsln DNLI_MOUSE : 325- 333: lsppd Llpv-LylsL nrlgp DNLI_MOUSE : 444- 452: yiarc Lsgr-LrlgL geqsv DNLI_SCHPO : 259- 268: fkpaa LtipfLfdsL kkiaq DNLI_SCHPO : 302- 310: aepky Lira-LegkL rlqla DNLI_SCHPO : 306- 314: ylira Legk-LrlqL aekti DNLI_SCHPO : 692- 700: fepky Lwev-LaadL slspv DNLI_VACCC : 39- 48: rddky LiiklLlpgL ddriy DNLI_VACCC : 364- 372: snesq Ltdv-LddaL trkle DNLI_VACCC : 368- 376: qltdv Ldda-LtrkL eglvl DNLI_VACCV : 39- 48: rddky LiiklLlpgL ddriy DNLI_VACCV : 364- 372: snesq Ltdv-LddaL trkle DNLI_VACCV : 368- 376: qltdv Ldda-LtrkL eglvl DNLI_VARV : 39- 48: rddky LiiklLlpgL ddriy DNLI_VARV : 364- 372: snesq Ltdv-LddaL trkle DNLI_VARV : 368- 376: qltdv Ldda-LtrkL eglvl DNLI_YEAST : 205- 213: dyeag Lelg-LgenL lmkti DNLI_YEAST : 302- 310: ieakf Lirs-LeskL rigla DNLI_YEAST : 306- 314: flirs Lesk-LrigL aektv DNLI_YEAST : 693- 701: feptt Lfev-LtadL slspi K 11: 12.0102 23( 14) K-x(4,5)-L-x(4)-L Occurences: 23(14) DNLI_ASFB7 : 337- 348: qgkkg KdlgaiLwvceL pnkkr DNLI_ASFB7 : 372- 382: yalfq Kltpa-LfkkhL ygkel DNLI_ASFM2 : 337- 348: qgkkg KdlgaiLwvceL pnkkr DNLI_ASFM2 : 372- 382: yalfq Kltpa-LfkkhL ygkel DNLI_BPT3 : 140- 150: evidg Kfefh-LdpkrL svrly DNLI_BPT4 : 337- 348: kviyk KyidqgLegiiL knidg DNLI_BPT6 : 337- 348: kviyk KyidqgLegiiL knidg DNLI_BPT7 : 134- 144: irkkd Kvpfk-LhtghL hikly DNLI_DESAM : 15- 25: fdrle Kissr-LqltsL ladlf DNLI_DESAM : 48- 59: yiiqg KlwpdfLgmpeL gigek DNLI_DESAM : 153- 163: lagll Kdasp-LeakyL vrfvd DNLI_HUMAN : 716- 727: leqsv KdscegLmvktL dvdat DNLI_MOUSE : 714- 725: leqsv KdscegLmvktL dvdat DNLI_SCHPO : 564- 575: leesv KdscegLmvkmL egpds DNLI_VACCC : 37- 48: tdrdd KyliikLllpgL ddriy DNLI_VACCC : 144- 154: tcndl Kcvvm-LidkdL kikag DNLI_VACCV : 37- 48: tdrdd KyliikLllpgL ddriy DNLI_VACCV : 144- 154: tcndl Kcvvm-LidkdL kikag DNLI_VARV : 37- 48: tdrdd KyliikLllpgL ddriy DNLI_VARV : 144- 154: tcndl Kcvvm-LidkdL kikag DNLI_YEAST : 17- 28: sarpl KsrlplLmsssL pssag DNLI_YEAST : 317- 328: iglae KtvlisLskalL lhden DNLI_YEAST : 478- 489: avawd KdqgkiLpfqvL strkr L 12: 12.0102 23( 14) E-x(4,5)-K-x-L Occurences: 23(14) DNLI_ASFB7 : 203- 211: vyldg ElylhrKpL qwiag DNLI_ASFM2 : 203- 211: vyldg ElylhrKpL qwiag DNLI_BPT3 : 16- 23: avsfv Esavk-KaL etsgy DNLI_BPT3 : 142- 150: idgkf EfhldpKrL svrly DNLI_BPT4 : 356- 363: idglw Enars-KnL ykfke DNLI_BPT6 : 356- 363: idglw Enars-KnL ykfke DNLI_BPT7 : 16- 23: avsfv Esaik-KaL dnagy DNLI_DESAM : 58- 66: flgmp ElgigeKfL irals DNLI_DESAM : 359- 366: myyeg Edytv-KpL serrk DNLI_DESAM : 410- 417: isega Egvmv-KsL apdai DNLI_HUMAN : 720- 727: vkdsc Eglmv-KtL dvdat DNLI_HUMAN : 807- 815: deele EhhqslKaL vlpsp DNLI_MOUSE : 718- 725: vkdsc Eglmv-KtL dvdat DNLI_SCHPO : 96- 103: nnivs Eakkq-KtL gssss DNLI_SCHPO : 295- 302: llssc Egaep-KyL irale DNLI_SCHPO : 568- 575: vkdsc Eglmv-KmL egpds DNLI_VACCC : 124- 131: ssvtk Eshqi-KlL tdias DNLI_VACCV : 124- 131: ssvtk Eshqi-KlL tdias DNLI_VARV : 124- 131: ssitk Eshqi-KlL tdias DNLI_YEAST : 77- 85: dnvsg EeeyatKkL kqtav DNLI_YEAST : 78- 85: nvsge Eeyat-KkL kqtav DNLI_YEAST : 519- 526: lcynd Erlin-KsL kerre DNLI_YEAST : 571- 578: vnhsc Eglmv-KmL egpes M 13: 11.5102 15( 14) G-x(1,2)-D-x(3,4)-K Occurences: 15(14) DNLI_ASFB7 : 179- 185: ekefl Gl-Dnik-K elkql DNLI_ASFM2 : 179- 185: ekefl Gl-Dnik-K elkql DNLI_BPT3 : 337- 345: fekfr GteDnpqeK m DNLI_BPT4 : 408- 416: vnags GlkDkagvK sheld DNLI_BPT6 : 408- 416: vnags GlkDkagvK sheld DNLI_BPT7 : 68- 74: lehln Gf-Dvrw-K rllnd DNLI_BPT7 : 350- 358: fvmfr GteDnpqeK m DNLI_DESAM : 358- 364: lmyye Ge-Dytv-K plser DNLI_HUMAN : 348- 356: qglel GvgDgvllK avaqa DNLI_MOUSE : 346- 354: qglel GvgDgvllK avaqa DNLI_SCHPO : 472- 479: dceav Gw-DrdenK ilpfq DNLI_VACCC : 436- 444: avflm GcyDdesgK wktvt DNLI_VACCV : 436- 444: avflm GcyDdesgK wktvt DNLI_VARV : 436- 444: avflm GcyDdesgK wktvt DNLI_YEAST : 276- 282: iaktq Gk-Dsql-K kmkli DNLI_YEAST : 276- 283: iaktq Gk-DsqlkK mklik N 14: 11.5102 18( 14) K-x(4,5)-E-x(1,2)-N Occurences: 18(14) DNLI_ASFB7 : 77- 86: avris KmtrvtEgkN lgkkn DNLI_ASFM2 : 77- 86: avris KttrvtEgkN lgkkn DNLI_BPT3 : 58- 67: lsrvs KfipalEhlN gfdkr DNLI_BPT3 : 334- 341: hpsfe Kfrgt-Ed-N pqekm DNLI_BPT4 : 18- 25: gstkq Kqail-Ek-N kdnel DNLI_BPT4 : 435- 442: nyyig Kilec-Ec-N gwlks DNLI_BPT6 : 18- 25: gstkq Kqail-Ek-N kdnel DNLI_BPT6 : 435- 442: nyyig Kilec-Ec-N gwlks DNLI_BPT7 : 58- 67: lsrvs KtipalEhlN gfdvr DNLI_DESAM : 372- 380: serrk KlesivEd-N dyvhi DNLI_HUMAN : 18- 26: kegka Kkpek-EasN ssret DNLI_HUMAN : 36- 43: teppp Kaalk-Ew-N gvvse DNLI_MOUSE : 36- 43: keppp Kvalk-Er-N qvvpe DNLI_SCHPO : 130- 137: iplpi Keppl-Es-N arndk DNLI_VACCC : 340- 348: rrsfl Kdvmv-EipN rivfs DNLI_VACCV : 340- 348: rrsfl Kdvmv-EipN rivfs DNLI_VARV : 340- 348: rrsfl Kdvmv-EipN rivfs DNLI_YEAST : 493- 500: vlstr Krkdv-El-N dvkvk O 15: 11.5102 30( 14) S-x(2,3)-K-x(3,4)-E Occurences: 30(14) DNLI_ASFB7 : 52- 61: tdemf StdvKdavaE iftkf DNLI_ASFM2 : 52- 61: tdemf StdvKdavaE iftkf DNLI_BPT3 : 17- 24: vsfve Sav-Kkal-E tsgyl DNLI_BPT3 : 240- 248: krgkk SgwwKlkp-E ceadg DNLI_BPT3 : 299- 306: mdeft Snv-Kahg-E dfyng DNLI_BPT3 : 331- 339: slrhp Sfe-KfrgtE dnpqe DNLI_BPT4 : 14- 23: iasig StkqKqailE knkdn DNLI_BPT4 : 242- 249: aypen Ska-Kefa-E vaesr DNLI_BPT4 : 312- 321: leqmt SgydKviliE nqvvn DNLI_BPT6 : 14- 23: iasig StkqKqailE knkdn DNLI_BPT6 : 242- 249: ahpen Skv-Kdft-E vaesr DNLI_BPT6 : 312- 321: leqmt SgydKviliE nqvvn DNLI_BPT7 : 234- 242: krgkk SgwwKmkp-E neadg DNLI_DESAM : 586- 593: lemyk Sql-Kkie-E kpsdq DNLI_HUMAN : 552- 560: ptrgi SevlKrfe-E aaftc DNLI_MOUSE : 550- 558: ptrgv SevlKrfe-E vdftc DNLI_SCHPO : 34- 43: nffis SashKsehvE vsqss DNLI_SCHPO : 58- 66: nvdgr StseKrkv-E svklv DNLI_SCHPO : 212- 220: lgige SiimKaig-E stgqt DNLI_VACCC : 65- 73: iikly SiifKqsq-E dmlqd DNLI_VACCC : 178- 186: dvfrk SnnlKeii-E nsskq DNLI_VACCC : 337- 345: lyerr Sfl-KdvmvE ipnri DNLI_VACCV : 65- 73: iikly SiifKqsq-E dmlqd DNLI_VACCV : 178- 186: dvfrk SnnlKeii-E naskq DNLI_VACCV : 337- 345: lyerr Sfl-KdvmvE ipnri DNLI_VARV : 89- 97: igdti StffKent-E irprn DNLI_VARV : 178- 186: dvfrk SnnlKeii-E neskq DNLI_VARV : 337- 345: lykrr Sfl-KdvmvE ipnri DNLI_YEAST : 416- 423: getft Sey-Kydg-E raqvh DNLI_YEAST : 490- 498: pfqvl Str-KrkdvE lndvk P 16: 11.5102 17( 14) D-G-x(3,5)-H Occurences: 17(14) DNLI_ASFB7 : 201- 207: vrvyl DGelyl-H rkplq DNLI_ASFM2 : 201- 207: vrvyl DGelyl-H rkplq DNLI_BPT3 : 138- 144: grevi DGkfef-H ldpkr DNLI_BPT3 : 324- 329: meatp DGslr--H psfek DNLI_BPT4 : 215- 221: egvli DGelvy-H eqvkk DNLI_BPT6 : 215- 221: egvli DGelvy-H eqvkk DNLI_BPT7 : 337- 342: meetp DGslr--H psfvm DNLI_DESAM : 263- 270: vdyky DGergqiH kagdk DNLI_HUMAN : 570- 577: ceyky DGqraqiH alegg DNLI_HUMAN : 827- 834: pyvri DGavipdH wldps DNLI_MOUSE : 568- 575: ceyky DGqraqiH vlegg DNLI_MOUSE : 825- 832: pyvri DGavapdH wldps DNLI_SCHPO : 418- 425: ceyky DGeraqvH ftedg DNLI_VACCC : 233- 240: aevky DGervqvH knnne DNLI_VACCV : 233- 240: aevky DGervqvH knnne DNLI_VARV : 233- 240: aevky DGervqvH knnne DNLI_YEAST : 421- 428: seyky DGeraqvH llndg Q 17: 11.5102 18( 14) E-x(1,2)-T-x(4,5)-L Occurences: 18(14) DNLI_ASFB7 : 386- 394: hlygk El-TveyaeL spktg DNLI_ASFM2 : 386- 394: hlygk El-TveyaeL spktg DNLI_BPT3 : 320- 327: qvnym Ea-Tpdgs-L rhpsf DNLI_BPT4 : 73- 81: mldfi Ef-TlatrkL tgnaa DNLI_BPT6 : 73- 81: mldfi Ef-TlatrkL tgnaa DNLI_BPT7 : 333- 340: qisym Ee-Tpdgs-L rhpsf DNLI_DESAM : 572- 581: pdksp EdaTtnreiL emyks DNLI_HUMAN : 156- 164: kkeee EeeTpkes-L teaev DNLI_HUMAN : 157- 164: keeee Ee-Tpkes-L teaev DNLI_MOUSE : 154- 162: kkrkk EeeTpkes-L aeaed DNLI_MOUSE : 155- 162: krkke Ee-Tpkes-L aeaed DNLI_SCHPO : 316- 323: rlqla Ek-Tilva-L anata DNLI_VACCC : 539- 546: dktwk Es-Thlnd-L vnltk DNLI_VACCV : 539- 546: dktwk Es-Thlnd-L vnltk DNLI_VARV : 539- 546: dktwk Es-Thlnd-L vnltk DNLI_YEAST : 316- 323: rigla Ek-Tvlis-L skall DNLI_YEAST : 689- 697: pdvwf EptTlfev-L tadls DNLI_YEAST : 689- 697: pdvwf Ep-TtlfevL tadls DNLI_YEAST : 695- 703: pttlf EvlTadls-L spiyk R 18: 11.5102 27( 14) S-x(1,3)-K-x(3)-E Occurences: 27(14) DNLI_ASFB7 : 271- 277: qvenf Sv--KnvdE alrlk DNLI_ASFM2 : 271- 277: qvenf Sv--KnedE alrlk DNLI_BPT3 : 17- 24: vsfve Sav-KkalE tsgyl DNLI_BPT3 : 240- 248: krgkk SgwwKlkpE ceadg DNLI_BPT3 : 299- 306: mdeft Snv-KahgE dfyng DNLI_BPT4 : 242- 249: aypen Ska-KefaE vaesr DNLI_BPT6 : 242- 249: ahpen Skv-KdftE vaesr DNLI_BPT7 : 234- 242: krgkk SgwwKmkpE neadg DNLI_DESAM : 586- 593: lemyk Sql-KkieE kpsdq DNLI_HUMAN : 552- 560: ptrgi SevlKrfeE aaftc DNLI_HUMAN : 714- 720: efleq Sv--KdscE glmvk DNLI_MOUSE : 550- 558: ptrgv SevlKrfeE vdftc DNLI_MOUSE : 712- 718: efleq Sv--KdscE glmvk DNLI_SCHPO : 58- 66: nvdgr StseKrkvE svklv DNLI_SCHPO : 60- 66: dgrst Se--KrkvE svklv DNLI_SCHPO : 67- 73: krkve Sv--KlvdE skhnn DNLI_SCHPO : 212- 220: lgige SiimKaigE stgqt DNLI_SCHPO : 562- 568: eflee Sv--KdscE glmvk DNLI_VACCC : 65- 73: iikly SiifKqsqE dmlqd DNLI_VACCC : 178- 186: dvfrk SnnlKeiiE nsskq DNLI_VACCV : 65- 73: iikly SiifKqsqE dmlqd DNLI_VACCV : 178- 186: dvfrk SnnlKeiiE naskq DNLI_VARV : 89- 97: igdti StffKentE irprn DNLI_VARV : 178- 186: dvfrk SnnlKeiiE neskq DNLI_YEAST : 62- 68: pspkk Ss--KhmlE ermdn DNLI_YEAST : 416- 423: getft Sey-KydgE raqvh DNLI_YEAST : 525- 531: rlink Sl--KerrE yltkv S 19: 11.5102 22( 14) A-x(1,3)-S-x(2)-L Occurences: 22(14) DNLI_ASFB7 : 220- 227: agqan AktdSseL hfyvf DNLI_ASFM2 : 220- 227: agqan AkadSseL hfyvf DNLI_ASFM2 : 222- 227: qanak Ad--SseL hfyvf DNLI_BPT3 : 22- 29: savkk AletSgyL iadck DNLI_BPT3 : 286- 293: grlvd AnniSraL mdeft DNLI_BPT4 : 358- 363: glwen Ar--SknL ykfke DNLI_BPT4 : 413- 420: glkdk AgvkSheL drtri DNLI_BPT6 : 358- 363: glwen Ar--SknL ykfke DNLI_BPT6 : 413- 420: glkdk AgvkSheL drtri DNLI_BPT7 : 48- 53: cvdnt An--SywL srvsk DNLI_BPT7 : 280- 287: grlvn AtniSraL mdeft DNLI_DESAM : 113- 120: laflg AqkaSkpL tvekv DNLI_HUMAN : 443- 450: earfi ArslSgrL rlgla DNLI_MOUSE : 441- 448: earyi ArclSgrL rlglg DNLI_SCHPO : 461- 466: wkkpd Ar--SfiL dceav DNLI_VACCC : 275- 280: kafkk At--SivL dseiv DNLI_VACCC : 409- 414: negsm Ad--SadL vvlga DNLI_VACCV : 275- 280: kafkk At--SivL dseiv DNLI_VACCV : 409- 414: negsm Ad--SadL vvlga DNLI_VARV : 275- 280: kafkk At--SivL dseiv DNLI_VARV : 409- 414: negsm Ad--SadL vvlga DNLI_YEAST : 160- 165: fnkie Ai--SsrL eiiri T 20: 11.5102 24( 14) D-x(1,3)-I-x(3)-L Occurences: 24(14) DNLI_ASFB7 : 181- 187: eflgl Dn--IkkeL kqlyl DNLI_ASFM2 : 181- 187: eflgl Dn--IkkeL kqlyl DNLI_BPT3 : 285- 293: tgrlv DannIsraL mdeft DNLI_BPT4 : 70- 76: ltdml Df--IeftL atrkl DNLI_BPT6 : 70- 76: ltdml Df--IeftL atrkl DNLI_BPT7 : 246- 252: penea Dg--IiqgL vwgtk DNLI_DESAM : 177- 184: rvgig Dat-IldaL aitfg DNLI_DESAM : 207- 215: ynlra DlgnIakiL anggi DNLI_HUMAN : 512- 520: fcevp DldrIipvL lehgl DNLI_HUMAN : 514- 520: evpdl Dr--IipvL lehgl DNLI_HUMAN : 514- 521: evpdl Dri-IpvlL ehgle DNLI_HUMAN : 703- 711: sldtk DieqIaefL eqsvk DNLI_HUMAN : 758- 766: vgdtl DlvvIgayL grgkr DNLI_MOUSE : 510- 518: fcevp DldrIipvL lehgl DNLI_MOUSE : 512- 518: evpdl Dr--IipvL lehgl DNLI_MOUSE : 512- 519: evpdl Dri-IpvlL ehgle DNLI_MOUSE : 701- 709: sldtk DteqIaefL eqsvk DNLI_MOUSE : 756- 764: vgdtl DlvvIgayL grgkr DNLI_SCHPO : 362- 368: qlpsy Dl--IvphL iehgl DNLI_VACCC : 36- 44: itdrd DkylIiklL lpgld DNLI_VACCC : 474- 482: ikink DpkkIpewL vvnki DNLI_VACCV : 36- 44: itdrd DkylIiklL lpgld DNLI_VACCV : 474- 482: vkink DpkkIpewL vvnki DNLI_VARV : 36- 44: itdrd DkylIiklL lpgld DNLI_VARV : 474- 482: vkink DpkkIpewL vvnki DNLI_YEAST : 518- 526: ilcyn DerlInksL kerre Number of patterns evaluated by Pratt:7565 Total running time: 12 seconds