------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file DNASE_I_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DNASE_I_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DRN1_BOVIN 260 DRN1_HUMAN 282 DRN1_PIG 262 DRN1_RAT 284 DRN1_SHEEP 260 Pratt run started at Thu Feb 6 19:18:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 153.2919 5( 5) I-A-A-F-N-I-x-T-F-G-x-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-x(2)-R-Y-D-I-x(5)-V-R-D-x-H-L-x-A-V-G-K-L-L 2: 149.1218 5( 5) V-x(0,1)-Q-x(0,1)-K-W-x-L-x-D-x-M-x-M-G-D-F-N-A-x-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D-x-A-D-T-T 3: 149.1218 5( 5) D-V-Y-L-x-V-x(0,1)-Q-x(0,1)-K-W-x-L-x-D-x-M-x-M-G-D-F-N-A-x-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D 4: 149.1218 5( 5) Y-D-V-Y-L-x-V-x(0,1)-Q-x(0,1)-K-W-x-L-x-D-x-M-x-M-G-D-F-N-A-x-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P 5: 149.1218 5( 5) L-Y-D-V-Y-L-x-V-x(0,1)-Q-x(0,1)-K-W-x-L-x-D-x-M-x-M-G-D-F-N-A-x-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I 6: 149.1218 5( 5) A-A-F-N-I-x-T-F-G-x-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-x(2)-R-Y-D-I-x(5)-V-R-D-x-H-L-x-A-V-G-K-L-L 7: 149.1218 5( 5) L-x-I-A-A-F-N-I-x-T-F-G-x-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-x(2)-R-Y-D-I-x(5)-V-R-D-x-H-L-x-A-V-G-K 8: 144.9518 5( 5) W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D-x-A-D-T-T-x(3,4)-T-x(0,1)-C-A-Y-D-R-I-V-V-A-G-x-L-L-x(3)-V-V-x(2)-S-A 9: 144.9518 5( 5) L-x-V-x(0,1)-Q-x(0,1)-K-W-x-L-x-D-x-M-x-M-G-D-F-N-A-x-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D-x-A-D 10: 144.9518 5( 5) V-Y-L-x-V-x(0,1)-Q-x(0,1)-K-W-x-L-x-D-x-M-x-M-G-D-F-N-A-x-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D 11: 144.9518 5( 5) N-I-x-T-F-G-x-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-x(2)-R-Y-D-I-x(5)-V-R-D-x-H-L-x-A-V-G-K-L-L-x(2)-L-N 12: 144.9518 5( 5) F-N-I-x-T-F-G-x-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-x(2)-R-Y-D-I-x(5)-V-R-D-x-H-L-x-A-V-G-K-L-L-x(2)-L 13: 144.9518 5( 5) A-F-N-I-x-T-F-G-x-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-x(2)-R-Y-D-I-x(5)-V-R-D-x-H-L-x-A-V-G-K-L-L 14: 141.7817 5( 5) S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D-x-A-D-T-T-x(5)-C-A-Y-D-R-I-V-V-A-G-x-L-L 15: 141.7817 5( 5) D-x-N-A-x-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D-x-A-D-T-T-x(5)-C-A-Y-D-R-I-V-V 16: 141.2817 5( 5) A-x(1,2)-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D-x-A-D-T-T-x(5)-C-A-Y-D-R-I-V-V-A-G-x-L 17: 141.2817 5( 5) D-x(2)-A-x(0,1)-C-S-Y-V-x(2)-S-x-W-S-S-I-R-L-x(2)-S-x(2)-F-Q-W-L-I-P-D-x-A-D-T-T-x(5)-C-A-Y-D-R-I-V-V-A 18: 140.7817 5( 5) A-Y-D-R-I-V-V-A-G-x-L-L-x(3)-V-V-x(0,1)-P-x(0,1)-S-A-x-P-F-x-F-Q-A-x(3)-L-x(4)-A-x-A-I-S-D-H-Y-P-V-E-V-x-L 19: 140.7817 5( 5) C-A-Y-D-R-I-V-V-A-G-x-L-L-x(3)-V-V-x(0,1)-P-x(0,1)-S-A-x-P-F-x-F-Q-A-x(3)-L-x(4)-A-x-A-I-S-D-H-Y-P-V-E-V 20: 140.7817 5( 5) F-Q-W-L-I-P-D-x-A-D-T-T-x(3,4)-T-x(0,1)-C-A-Y-D-R-I-V-V-A-G-x-L-L-x(3)-V-V-x(2)-S-A-x-P-F-x-F-Q-A-x(3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 188.3419 5( 5) I-A-A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L B 2: 187.4200 5( 5) L-[KR]-I-A-A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K C 3: 184.1718 5( 5) A-A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L D 4: 183.1758 5( 5) N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L-[DN]-x-L-N E 5: 183.1758 5( 5) F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L-[DN]-x-L F 6: 183.1758 5( 5) A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L-[DN] G 7: 173.5843 5( 5) V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T H 8: 173.5829 5( 5) D-V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D I 9: 173.5829 5( 5) Y-D-V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P J 10: 173.5829 5( 5) L-Y-D-V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I K 11: 172.5882 5( 5) L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D L 12: 169.4128 5( 5) V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D M 13: 168.2608 5( 5) A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-x(0,1)-P-x(0,1)-S-A-[ALV]-P-F-[DN]-F-Q-A-[AE]-[FY]-x-L-[ST]-[DNQ]-[EQ]-x-A-x-A-I-S-D-H-Y-P-V-E-V-x-L N 14: 168.2608 5( 5) C-A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-x(0,1)-P-x(0,1)-S-A-[ALV]-P-F-[DN]-F-Q-A-[AE]-[FY]-x-L-[ST]-[DNQ]-[EQ]-x-A-x-A-I-S-D-H-Y-P-V-E-V O 15: 167.9305 5( 5) F-Q-W-L-I-P-D-[ST]-A-D-T-T-x(3,4)-T-x(0,1)-C-A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-[GP]-[DGPS]-S-A-[ALV]-P-F-[DN]-F-Q-A-[AE]-[FY]-x-L P 16: 166.7062 5( 5) D-x-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V Q 17: 166.2823 5( 5) W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-x(3,4)-T-x(0,1)-C-A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-[GP]-[DGPS]-S-A R 18: 163.4665 5( 5) S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V-A-G-x-L-L S 19: 162.9665 5( 5) A-x(1,2)-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V-A-G-x-L T 20: 162.9665 5( 5) D-x(2)-A-x(0,1)-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 188.3419 5( 5) I-A-A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L Occurences: 5(5) DRN1_BOVIN : 3- 52: lk IAAFNIRTFGETKMSNATLaS-YIVrIVRRYDIVLIQEVRDSHLVAVGKLL dylnq DRN1_HUMAN : 25- 74: avslk IAAFNIQTFGETKMSNATLvS-YIVqILSRYDIALVQEVRDSHLTAVGKLL dnlnq DRN1_PIG : 3- 52: lr IAAFNIRTFGETKMSNATL-SnYIVrILSRYDIALIQEVRDSHLTAVGKLL nelnq DRN1_RAT : 25- 74: aatlr IAAFNIRTFGDTKMSNATLsS-YIVkILSRYDIAVVQEVRDTHLVAVGKLL delnr DRN1_RAT : 25- 74: aatlr IAAFNIRTFGDTKMSNATL-SsYIVkILSRYDIAVVQEVRDTHLVAVGKLL delnr DRN1_SHEEP : 3- 52: lk IAAFNIRTFGETKMSNATLsS-YIVrILRRYDIALIEQVRDSHLVAVGKLL ddlnq DRN1_SHEEP : 3- 52: lk IAAFNIRTFGETKMSNATL-SsYIVrILRRYDIALIEQVRDSHLVAVGKLL ddlnq B 2: 187.4200 5( 5) L-[KR]-I-A-A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K Occurences: 5(5) DRN1_BOVIN : 1- 50: LKIAAFNIRTFGETKMSNATLaS-YIVrIVRRYDIVLIQEVRDSHLVAVGK lldyl DRN1_HUMAN : 23- 72: qgavs LKIAAFNIQTFGETKMSNATLvS-YIVqILSRYDIALVQEVRDSHLTAVGK lldnl DRN1_PIG : 1- 50: LRIAAFNIRTFGETKMSNATL-SnYIVrILSRYDIALIQEVRDSHLTAVGK llnel DRN1_RAT : 23- 72: qlaat LRIAAFNIRTFGDTKMSNATLsS-YIVkILSRYDIAVVQEVRDTHLVAVGK lldel DRN1_RAT : 23- 72: qlaat LRIAAFNIRTFGDTKMSNATL-SsYIVkILSRYDIAVVQEVRDTHLVAVGK lldel DRN1_SHEEP : 1- 50: LKIAAFNIRTFGETKMSNATLsS-YIVrILRRYDIALIEQVRDSHLVAVGK llddl DRN1_SHEEP : 1- 50: LKIAAFNIRTFGETKMSNATL-SsYIVrILRRYDIALIEQVRDSHLVAVGK llddl C 3: 184.1718 5( 5) A-A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L Occurences: 5(5) DRN1_BOVIN : 4- 52: lki AAFNIRTFGETKMSNATLaS-YIVrIVRRYDIVLIQEVRDSHLVAVGKLL dylnq DRN1_HUMAN : 26- 74: vslki AAFNIQTFGETKMSNATLvS-YIVqILSRYDIALVQEVRDSHLTAVGKLL dnlnq DRN1_PIG : 4- 52: lri AAFNIRTFGETKMSNATL-SnYIVrILSRYDIALIQEVRDSHLTAVGKLL nelnq DRN1_RAT : 26- 74: atlri AAFNIRTFGDTKMSNATLsS-YIVkILSRYDIAVVQEVRDTHLVAVGKLL delnr DRN1_RAT : 26- 74: atlri AAFNIRTFGDTKMSNATL-SsYIVkILSRYDIAVVQEVRDTHLVAVGKLL delnr DRN1_SHEEP : 4- 52: lki AAFNIRTFGETKMSNATLsS-YIVrILRRYDIALIEQVRDSHLVAVGKLL ddlnq DRN1_SHEEP : 4- 52: lki AAFNIRTFGETKMSNATL-SsYIVrILRRYDIALIEQVRDSHLVAVGKLL ddlnq D 4: 183.1758 5( 5) N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L-[DN]-x-L-N Occurences: 5(5) DRN1_BOVIN : 7- 56: kiaaf NIRTFGETKMSNATLaS-YIVrIVRRYDIVLIQEVRDSHLVAVGKLLDyLN qddpn DRN1_HUMAN : 29- 78: kiaaf NIQTFGETKMSNATLvS-YIVqILSRYDIALVQEVRDSHLTAVGKLLDnLN qdapd DRN1_PIG : 7- 56: riaaf NIRTFGETKMSNATL-SnYIVrILSRYDIALIQEVRDSHLTAVGKLLNeLN qddpn DRN1_RAT : 29- 78: riaaf NIRTFGDTKMSNATLsS-YIVkILSRYDIAVVQEVRDTHLVAVGKLLDeLN rdipd DRN1_RAT : 29- 78: riaaf NIRTFGDTKMSNATL-SsYIVkILSRYDIAVVQEVRDTHLVAVGKLLDeLN rdipd DRN1_SHEEP : 7- 56: kiaaf NIRTFGETKMSNATLsS-YIVrILRRYDIALIEQVRDSHLVAVGKLLDdLN qddpn DRN1_SHEEP : 7- 56: kiaaf NIRTFGETKMSNATL-SsYIVrILRRYDIALIEQVRDSHLVAVGKLLDdLN qddpn E 5: 183.1758 5( 5) F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L-[DN]-x-L Occurences: 5(5) DRN1_BOVIN : 6- 55: lkiaa FNIRTFGETKMSNATLaS-YIVrIVRRYDIVLIQEVRDSHLVAVGKLLDyL nqddp DRN1_HUMAN : 28- 77: lkiaa FNIQTFGETKMSNATLvS-YIVqILSRYDIALVQEVRDSHLTAVGKLLDnL nqdap DRN1_PIG : 6- 55: lriaa FNIRTFGETKMSNATL-SnYIVrILSRYDIALIQEVRDSHLTAVGKLLNeL nqddp DRN1_RAT : 28- 77: lriaa FNIRTFGDTKMSNATLsS-YIVkILSRYDIAVVQEVRDTHLVAVGKLLDeL nrdip DRN1_RAT : 28- 77: lriaa FNIRTFGDTKMSNATL-SsYIVkILSRYDIAVVQEVRDTHLVAVGKLLDeL nrdip DRN1_SHEEP : 6- 55: lkiaa FNIRTFGETKMSNATLsS-YIVrILRRYDIALIEQVRDSHLVAVGKLLDdL nqddp DRN1_SHEEP : 6- 55: lkiaa FNIRTFGETKMSNATL-SsYIVrILRRYDIALIEQVRDSHLVAVGKLLDdL nqddp F 6: 183.1758 5( 5) A-F-N-I-[QR]-T-F-G-[DE]-T-K-M-S-N-A-T-L-x(0,1)-S-x(0,1)-Y-I-V-x-I-[LV]-[RS]-R-Y-D-I-[AV]-[LV]-[IV]-[EQ]-[EQ]-V-R-D-[ST]-H-L-[TV]-A-V-G-K-L-L-[DN] Occurences: 5(5) DRN1_BOVIN : 5- 53: lkia AFNIRTFGETKMSNATLaS-YIVrIVRRYDIVLIQEVRDSHLVAVGKLLD ylnqd DRN1_HUMAN : 27- 75: slkia AFNIQTFGETKMSNATLvS-YIVqILSRYDIALVQEVRDSHLTAVGKLLD nlnqd DRN1_PIG : 5- 53: lria AFNIRTFGETKMSNATL-SnYIVrILSRYDIALIQEVRDSHLTAVGKLLN elnqd DRN1_RAT : 27- 75: tlria AFNIRTFGDTKMSNATLsS-YIVkILSRYDIAVVQEVRDTHLVAVGKLLD elnrd DRN1_RAT : 27- 75: tlria AFNIRTFGDTKMSNATL-SsYIVkILSRYDIAVVQEVRDTHLVAVGKLLD elnrd DRN1_SHEEP : 5- 53: lkia AFNIRTFGETKMSNATLsS-YIVrILRRYDIALIEQVRDSHLVAVGKLLD dlnqd DRN1_SHEEP : 5- 53: lkia AFNIRTFGETKMSNATL-SsYIVrILRRYDIALIEQVRDSHLVAVGKLLD dlnqd G 7: 173.5843 5( 5) V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T Occurences: 5(5) DRN1_BOVIN : 154- 203: dvyld VqQ-KWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSADTT atstn DRN1_BOVIN : 154- 203: dvyld V-QqKWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSADTT atstn DRN1_HUMAN : 176- 225: dvyld V-QeKWgLEDVMLMGDFNAGCSYVrPSqWSSIRLwTSPtFQWLIPDSADTT atpth DRN1_PIG : 154- 203: dvyln VrQ-KWdLQDIMLMGDFNAGCSYVtTShWSSIRLrESPpFQWLIPDTADTT vssht DRN1_RAT : 176- 225: dvyld VrQ-KWgLEDIMFMGDFNAGCSYVtSSqWSSIRLrTSPiFQWLIPDSADTT atsth DRN1_SHEEP : 154- 203: dvyld VqQ-KWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSADTT atstn DRN1_SHEEP : 154- 203: dvyld V-QqKWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSADTT atstn H 8: 173.5829 5( 5) D-V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D Occurences: 5(5) DRN1_BOVIN : 149- 198: insly DVYLDVqQ-KWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt DRN1_BOVIN : 149- 198: insly DVYLDV-QqKWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt DRN1_HUMAN : 171- 220: idaly DVYLDV-QeKWgLEDVMLMGDFNAGCSYVrPSqWSSIRLwTSPtFQWLIPD sadtt DRN1_PIG : 149- 198: insly DVYLNVrQ-KWdLQDIMLMGDFNAGCSYVtTShWSSIRLrESPpFQWLIPD tadtt DRN1_RAT : 171- 220: idaly DVYLDVrQ-KWgLEDIMFMGDFNAGCSYVtSSqWSSIRLrTSPiFQWLIPD sadtt DRN1_SHEEP : 149- 198: insly DVYLDVqQ-KWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt DRN1_SHEEP : 149- 198: insly DVYLDV-QqKWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt I 9: 173.5829 5( 5) Y-D-V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P Occurences: 5(5) DRN1_BOVIN : 148- 197: einsl YDVYLDVqQ-KWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIP dsadt DRN1_BOVIN : 148- 197: einsl YDVYLDV-QqKWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIP dsadt DRN1_HUMAN : 170- 219: eidal YDVYLDV-QeKWgLEDVMLMGDFNAGCSYVrPSqWSSIRLwTSPtFQWLIP dsadt DRN1_PIG : 148- 197: einsl YDVYLNVrQ-KWdLQDIMLMGDFNAGCSYVtTShWSSIRLrESPpFQWLIP dtadt DRN1_RAT : 170- 219: eidal YDVYLDVrQ-KWgLEDIMFMGDFNAGCSYVtSSqWSSIRLrTSPiFQWLIP dsadt DRN1_SHEEP : 148- 197: einsl YDVYLDVqQ-KWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIP dsadt DRN1_SHEEP : 148- 197: einsl YDVYLDV-QqKWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIP dsadt J 10: 173.5829 5( 5) L-Y-D-V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I Occurences: 5(5) DRN1_BOVIN : 147- 196: aeins LYDVYLDVqQ-KWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLI pdsad DRN1_BOVIN : 147- 196: aeins LYDVYLDV-QqKWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLI pdsad DRN1_HUMAN : 169- 218: aeida LYDVYLDV-QeKWgLEDVMLMGDFNAGCSYVrPSqWSSIRLwTSPtFQWLI pdsad DRN1_PIG : 147- 196: aeins LYDVYLNVrQ-KWdLQDIMLMGDFNAGCSYVtTShWSSIRLrESPpFQWLI pdtad DRN1_RAT : 169- 218: seida LYDVYLDVrQ-KWgLEDIMFMGDFNAGCSYVtSSqWSSIRLrTSPiFQWLI pdsad DRN1_SHEEP : 147- 196: aeins LYDVYLDVqQ-KWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLI pdsad DRN1_SHEEP : 147- 196: aeins LYDVYLDV-QqKWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLI pdsad K 11: 172.5882 5( 5) L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D Occurences: 5(5) DRN1_BOVIN : 152- 201: lydvy LDVqQ-KWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSAD ttats DRN1_BOVIN : 152- 201: lydvy LDV-QqKWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSAD ttats DRN1_HUMAN : 174- 223: lydvy LDV-QeKWgLEDVMLMGDFNAGCSYVrPSqWSSIRLwTSPtFQWLIPDSAD ttatp DRN1_PIG : 152- 201: lydvy LNVrQ-KWdLQDIMLMGDFNAGCSYVtTShWSSIRLrESPpFQWLIPDTAD ttvss DRN1_RAT : 174- 223: lydvy LDVrQ-KWgLEDIMFMGDFNAGCSYVtSSqWSSIRLrTSPiFQWLIPDSAD ttats DRN1_SHEEP : 152- 201: lydvy LDVqQ-KWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSAD ttats DRN1_SHEEP : 152- 201: lydvy LDV-QqKWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPDSAD ttats L 12: 169.4128 5( 5) V-Y-L-[DN]-V-x(0,1)-Q-x(0,1)-K-W-x-L-[ENQ]-D-[IV]-M-[FL]-M-G-D-F-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D Occurences: 5(5) DRN1_BOVIN : 150- 198: nslyd VYLDVqQ-KWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt DRN1_BOVIN : 150- 198: nslyd VYLDV-QqKWhLNDVMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt DRN1_HUMAN : 172- 220: dalyd VYLDV-QeKWgLEDVMLMGDFNAGCSYVrPSqWSSIRLwTSPtFQWLIPD sadtt DRN1_PIG : 150- 198: nslyd VYLNVrQ-KWdLQDIMLMGDFNAGCSYVtTShWSSIRLrESPpFQWLIPD tadtt DRN1_RAT : 172- 220: dalyd VYLDVrQ-KWgLEDIMFMGDFNAGCSYVtSSqWSSIRLrTSPiFQWLIPD sadtt DRN1_SHEEP : 150- 198: nslyd VYLDVqQ-KWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt DRN1_SHEEP : 150- 198: nslyd VYLDV-QqKWdLNDIMLMGDFNADCSYVtSSqWSSIRLrTSStFQWLIPD sadtt M 13: 168.2608 5( 5) A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-x(0,1)-P-x(0,1)-S-A-[ALV]-P-F-[DN]-F-Q-A-[AE]-[FY]-x-L-[ST]-[DNQ]-[EQ]-x-A-x-A-I-S-D-H-Y-P-V-E-V-x-L Occurences: 5(5) DRN1_BOVIN : 210- 259: tstnc AYDRIVVAGsLLQsSVV-PgSAAPFDFQAAYgLSNEmAlAISDHYPVEVtL t DRN1_HUMAN : 232- 281: tpthc AYDRIVVAGmLLRgAVV-PdSALPFNFQAAYgLSDQlAqAISDHYPVEVmL k DRN1_PIG : 210- 259: sshtc AYDRIVVAGpLLQrAVV-PdSAAPFDFQAAFgLSQEtAlAISDHYPVEVtL kra DRN1_RAT : 232- 281: tsthc AYDRIVVAGaLLQaAVV-PsSAVPFDFQAEYrLTNQmAeAISDHYPVEVtL rkt DRN1_SHEEP : 210- 259: tstnc AYDRIVVAGsLLQsSVVgP-SAVPFDFQAAYgLSNEmAlAISDHYPVEVtL t N 14: 168.2608 5( 5) C-A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-x(0,1)-P-x(0,1)-S-A-[ALV]-P-F-[DN]-F-Q-A-[AE]-[FY]-x-L-[ST]-[DNQ]-[EQ]-x-A-x-A-I-S-D-H-Y-P-V-E-V Occurences: 5(5) DRN1_BOVIN : 209- 257: atstn CAYDRIVVAGsLLQsSVV-PgSAAPFDFQAAYgLSNEmAlAISDHYPVEV tlt DRN1_HUMAN : 231- 279: atpth CAYDRIVVAGmLLRgAVV-PdSALPFNFQAAYgLSDQlAqAISDHYPVEV mlk DRN1_PIG : 209- 257: vssht CAYDRIVVAGpLLQrAVV-PdSAAPFDFQAAFgLSQEtAlAISDHYPVEV tlkra DRN1_RAT : 231- 279: atsth CAYDRIVVAGaLLQaAVV-PsSAVPFDFQAEYrLTNQmAeAISDHYPVEV tlrkt DRN1_SHEEP : 209- 257: atstn CAYDRIVVAGsLLQsSVVgP-SAVPFDFQAAYgLSNEmAlAISDHYPVEV tlt O 15: 167.9305 5( 5) F-Q-W-L-I-P-D-[ST]-A-D-T-T-x(3,4)-T-x(0,1)-C-A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-[GP]-[DGPS]-S-A-[ALV]-P-F-[DN]-F-Q-A-[AE]-[FY]-x-L Occurences: 5(5) DRN1_BOVIN : 192- 241: rtsst FQWLIPDSADTTats-TnCAYDRIVVAGsLLQsSVVPGSAAPFDFQAAYgL snema DRN1_HUMAN : 214- 263: wtspt FQWLIPDSADTTatp-ThCAYDRIVVAGmLLRgAVVPDSALPFNFQAAYgL sdqla DRN1_PIG : 192- 241: respp FQWLIPDTADTTvsshT-CAYDRIVVAGpLLQrAVVPDSAAPFDFQAAFgL sqeta DRN1_RAT : 214- 263: rtspi FQWLIPDSADTTats-ThCAYDRIVVAGaLLQaAVVPSSAVPFDFQAEYrL tnqma DRN1_SHEEP : 192- 241: rtsst FQWLIPDSADTTats-TnCAYDRIVVAGsLLQsSVVGPSAVPFDFQAAYgL snema P 16: 166.7062 5( 5) D-x-N-A-[DG]-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V Occurences: 5(5) DRN1_BOVIN : 168- 216: vmlmg DfNADCSYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVV agsll DRN1_HUMAN : 190- 238: vmlmg DfNAGCSYVrPSqWSSIRLwTSPtFQWLIPDSADTTATPthCAYDRIVV agmll DRN1_PIG : 168- 216: imlmg DfNAGCSYVtTShWSSIRLrESPpFQWLIPDTADTTVSShtCAYDRIVV agpll DRN1_RAT : 190- 238: imfmg DfNAGCSYVtSSqWSSIRLrTSPiFQWLIPDSADTTATSthCAYDRIVV agall DRN1_SHEEP : 168- 216: imlmg DfNADCSYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVV agsll Q 17: 166.2823 5( 5) W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-x(3,4)-T-x(0,1)-C-A-Y-D-R-I-V-V-A-G-x-L-L-[QR]-x-[AS]-V-V-[GP]-[DGPS]-S-A Occurences: 5(5) DRN1_BOVIN : 181- 230: vtssq WSSIRLrTSStFQWLIPDSADTTats-TnCAYDRIVVAGsLLQsSVVPGSA apfdf DRN1_HUMAN : 203- 252: vrpsq WSSIRLwTSPtFQWLIPDSADTTatp-ThCAYDRIVVAGmLLRgAVVPDSA lpfnf DRN1_PIG : 181- 230: vttsh WSSIRLrESPpFQWLIPDTADTTvsshT-CAYDRIVVAGpLLQrAVVPDSA apfdf DRN1_RAT : 203- 252: vtssq WSSIRLrTSPiFQWLIPDSADTTats-ThCAYDRIVVAGaLLQaAVVPSSA vpfdf DRN1_SHEEP : 181- 230: vtssq WSSIRLrTSStFQWLIPDSADTTats-TnCAYDRIVVAGsLLQsSVVGPSA vpfdf R 18: 163.4665 5( 5) S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V-A-G-x-L-L Occurences: 5(5) DRN1_BOVIN : 174- 221: fnadc SYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVVAGsLL qssvv DRN1_HUMAN : 196- 243: fnagc SYVrPSqWSSIRLwTSPtFQWLIPDSADTTATPthCAYDRIVVAGmLL rgavv DRN1_PIG : 174- 221: fnagc SYVtTShWSSIRLrESPpFQWLIPDTADTTVSShtCAYDRIVVAGpLL qravv DRN1_RAT : 196- 243: fnagc SYVtSSqWSSIRLrTSPiFQWLIPDSADTTATSthCAYDRIVVAGaLL qaavv DRN1_SHEEP : 174- 221: fnadc SYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVVAGsLL qssvv S 19: 162.9665 5( 5) A-x(1,2)-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V-A-G-x-L Occurences: 5(5) DRN1_BOVIN : 171- 220: mgdfn AdcSYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVVAGsL lqssv DRN1_HUMAN : 193- 242: mgdfn AgcSYVrPSqWSSIRLwTSPtFQWLIPDSADTTATPthCAYDRIVVAGmL lrgav DRN1_PIG : 171- 220: mgdfn AgcSYVtTShWSSIRLrESPpFQWLIPDTADTTVSShtCAYDRIVVAGpL lqrav DRN1_RAT : 193- 242: mgdfn AgcSYVtSSqWSSIRLrTSPiFQWLIPDSADTTATSthCAYDRIVVAGaL lqaav DRN1_SHEEP : 171- 220: mgdfn AdcSYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVVAGsL lqssv T 20: 162.9665 5( 5) D-x(2)-A-x(0,1)-C-S-Y-V-x-[PST]-S-x-W-S-S-I-R-L-x-[ET]-S-[PS]-x-F-Q-W-L-I-P-D-[ST]-A-D-T-T-[AV]-[ST]-[PS]-x(2)-C-A-Y-D-R-I-V-V-A Occurences: 5(5) DRN1_BOVIN : 168- 217: vmlmg DfnAdCSYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVVA gsllq DRN1_HUMAN : 190- 239: vmlmg DfnAgCSYVrPSqWSSIRLwTSPtFQWLIPDSADTTATPthCAYDRIVVA gmllr DRN1_PIG : 168- 217: imlmg DfnAgCSYVtTShWSSIRLrESPpFQWLIPDTADTTVSShtCAYDRIVVA gpllq DRN1_RAT : 190- 239: imfmg DfnAgCSYVtSSqWSSIRLrTSPiFQWLIPDSADTTATSthCAYDRIVVA gallq DRN1_SHEEP : 168- 217: imlmg DfnAdCSYVtSSqWSSIRLrTSStFQWLIPDSADTTATStnCAYDRIVVA gsllq Number of patterns evaluated by Pratt:64559 Total running time: 8 seconds