------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 26 sequences from file DEAH_ATP_HELICASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 26 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 33 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DEAH_ATP_HELICASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CHL1_YEAST 861 ETF1_FOWP1 605 ETF1_SFVKA 635 ETF1_VACCC 637 ETF1_VACCV 637 ETF1_VARV 637 HRPA_ECOLI 1277 HRPA_HAEIN 1280 MLE_DROME 1293 PR02_YEAST 876 PR16_YEAST 1071 PR22_YEAST 1145 PRH1_SCHPO 719 RAD3_YEAST 778 RNHA_HUMAN 1279 SGS1_YEAST 1447 VI08_VACCC 676 VI08_VACCV 676 VI08_VARV 676 XPD_HUMAN 760 YABC_SCHPO 1328 YHF0_YEAST 697 YIS2_YEAST 993 YKH8_YEAST 735 YKQ0_CAEEL 1152 YMS2_CAEEL 1131 Pratt run started at Thu Feb 6 19:16:25 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 29( 26) D-E-x-H 2: 12.5102 32( 26) G-x-G-K 3: 12.0102 34( 26) Q-x(2)-G-x(0,1)-R 4: 12.0102 29( 26) Q-x(2,3)-R-x(2)-R 5: 12.0102 70( 26) L-x(2)-L-x(2,3)-L 6: 12.0102 37( 26) G-K-x(0,1)-T 7: 11.5102 62( 26) L-x(0,1)-L-x(4,5)-K 8: 11.5102 53( 26) K-x(2,3)-E-x(1,2)-L 9: 11.5102 58( 26) L-x(1,3)-E-L 10: 11.5102 51( 26) V-x(0,1)-L-x(1,2)-L 11: 11.5102 46( 26) T-x(3)-L-x(0,2)-L 12: 11.5102 69( 26) T-x(3,4)-L-x(2,3)-L 13: 11.5102 77( 26) L-x(2,3)-L-x(0,1)-I 14: 11.5102 75( 26) L-x(1,2)-L-x(0,1)-S 15: 11.5102 60( 26) L-x(1,2)-L-x(0,1)-I 16: 11.5102 67( 26) I-x(0,1)-L-x(2,3)-L 17: 11.5102 58( 26) I-x(0,2)-L-x(2)-L 18: 11.5102 75( 26) S-x(1,3)-L-x(2)-L 19: 11.5102 52( 26) K-x(1,2)-I-x(1,2)-S 20: 11.5102 65( 26) L-x(4,5)-K-x(2,3)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.8324 26( 26) Q-x(2)-G-x(0,1)-R-[ACGSTV]-x-[ER] B 2: 15.6856 27( 26) G-x-G-K-[ST] C 3: 14.7494 26( 26) D-E-[AILV]-H D 4: 12.5102 29( 26) D-E-x-H E 5: 12.0102 29( 26) Q-x(2,3)-R-x(2)-R F 6: 12.0102 70( 26) L-x(2)-L-x(2,3)-L G 7: 12.0102 37( 26) G-K-x(0,1)-T H 8: 11.5102 62( 26) L-x(0,1)-L-x(4,5)-K I 9: 11.5102 53( 26) K-x(2,3)-E-x(1,2)-L J 10: 11.5102 58( 26) L-x(1,3)-E-L K 11: 11.5102 51( 26) V-x(0,1)-L-x(1,2)-L L 12: 11.5102 46( 26) T-x(3)-L-x(0,2)-L M 13: 11.5102 69( 26) T-x(3,4)-L-x(2,3)-L N 14: 11.5102 77( 26) L-x(2,3)-L-x(0,1)-I O 15: 11.5102 75( 26) L-x(1,2)-L-x(0,1)-S P 16: 11.5102 60( 26) L-x(1,2)-L-x(0,1)-I Q 17: 11.5102 67( 26) I-x(0,1)-L-x(2,3)-L R 18: 11.5102 58( 26) I-x(0,2)-L-x(2)-L S 19: 11.5102 75( 26) S-x(1,3)-L-x(2)-L T 20: 11.5102 52( 26) K-x(1,2)-I-x(1,2)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.8324 26( 26) Q-x(2)-G-x(0,1)-R-[ACGSTV]-x-[ER] Occurences: 26(26) CHL1_YEAST : 797- 804: mkavn QsvG-RAiR handy ETF1_FOWP1 : 449- 456: fsqyn QilG-RSiR kfsyk ETF1_SFVKA : 449- 456: fsqyn QilG-RSiR kfsyk ETF1_VACCC : 450- 457: fsqyn QilG-RSiR kfsya ETF1_VACCV : 450- 457: fsqyn QilG-RSiR kfsya ETF1_VARV : 450- 457: fsqyn QilG-RSiR kfsyv HRPA_ECOLI : 375- 382: qasan QrkG-RCgR vsegi HRPA_HAEIN : 375- 382: qasan QrkG-RCgR vsegi MLE_DROME : 764- 771: ktnle QrkG-RAgR vrpgf PR02_YEAST : 548- 555: rasvd QraG-RAgR vgpgk PR16_YEAST : 685- 692: kanad QrsG-RAgR tapgt PR22_YEAST : 804- 811: qaqan QrkG-RAgR tgpgk PRH1_SCHPO : 417- 424: qsaam QrsG-RAgR eaagq RAD3_YEAST : 664- 671: mrhaa QclG-RVlR gkddy RNHA_HUMAN : 759- 766: ktnle QrkG-RAgR stagf SGS1_YEAST : 986- 993: legyy QetG-RAgR dgnys VI08_VACCC : 491- 498: ksmrd QrkG-RVgR vnpgt VI08_VACCV : 491- 498: ksmrd QrkG-RVgR vnpgt VI08_VARV : 491- 498: ksmrd QrkG-RVgR vnpgt XPD_HUMAN : 662- 669: mrhaa QcvG-RAiR gktdy YABC_SCHPO : 829- 836: legyy QetG-RAgR dgkpa YHF0_YEAST : 355- 363: nmnvl QflGfRSdE ikhlf YIS2_YEAST : 603- 610: pikni QrmG-RTgR krdgk YKH8_YEAST : 407- 414: qasam QrsG-RAgR esegk YKQ0_CAEEL : 654- 661: qasgd QraG-RAgR isagh YMS2_CAEEL : 762- 769: qasan QrtG-RAgR tgpgq B 2: 15.6856 27( 26) G-x-G-K-[ST] Occurences: 27(26) CHL1_YEAST : 45- 49: lespt GtGKT lslic ETF1_FOWP1 : 48- 52: lfhim GsGKT iiall ETF1_SFVKA : 48- 52: lfhim GsGKT iiall ETF1_VACCC : 48- 52: lfhim GsGKT iiall ETF1_VACCV : 48- 52: lfhim GsGKT iiall ETF1_VARV : 48- 52: lfhim GsGKT iiall HRPA_ECOLI : 84- 88: vaget GsGKT tqlpk HRPA_HAEIN : 85- 89: vaget GsGKT tqlpk MLE_DROME : 410- 414: irgnt GcGKT tqiaq PR02_YEAST : 249- 253: imget GsGKT tqlpq PR16_YEAST : 376- 380: iiget GsGKT tqlaq PR22_YEAST : 509- 513: ivget GsGKT tqitq PRH1_SCHPO : 122- 126: vvget GsGKS tqipq RAD3_YEAST : 45- 49: lemps GtGKT vslls RNHA_HUMAN : 414- 418: irgat GcGKT tqvpq SGS1_YEAST : 703- 707: vlmpt GgGKS lcyql SGS1_YEAST : 1133- 1137: tleeh GiGKS mqkse VI08_VACCC : 188- 192: ltggt GvGKT sqvpk VI08_VACCV : 188- 192: ltggt GvGKT sqvpk VI08_VARV : 188- 192: ltggt GvGKT sqvpk XPD_HUMAN : 45- 49: lemps GtGKT vslla YABC_SCHPO : 544- 548: ilmpt GgGKS lcyql YHF0_YEAST : 14- 18: vqapp GyGKT elfhl YIS2_YEAST : 110- 114: caipt GmGKT fiast YKH8_YEAST : 107- 111: liget GsGKS tqipq YKQ0_CAEEL : 262- 266: vcget GsGKT tqipq YMS2_CAEEL : 467- 471: ivget GsGKT tqlaq C 3: 14.7494 26( 26) D-E-[AILV]-H Occurences: 26(26) CHL1_YEAST : 393- 396: sivii DEAH nliet ETF1_FOWP1 : 135- 138: sifii DEAH nifgn ETF1_SFVKA : 135- 138: aifii DEAH nifgn ETF1_VACCC : 135- 138: sifiv DEAH nifgn ETF1_VACCV : 135- 138: sifiv DEAH nifgn ETF1_VARV : 135- 138: sifiv DEAH nifgn HRPA_ECOLI : 178- 181: dtiii DEAH ehsln HRPA_HAEIN : 179- 182: sclii DEAH ersln MLE_DROME : 507- 510: shiiv DEIH erdvn PR02_YEAST : 346- 349: scimi DEAH ertla PR16_YEAST : 473- 476: scvii DEAH ersln PR22_YEAST : 603- 606: sviml DEAH ertva PRH1_SCHPO : 216- 219: htlil DEAH ertlm RAD3_YEAST : 235- 238: sivif DEAH nidnv RNHA_HUMAN : 511- 514: shviv DEIH erdin SGS1_YEAST : 808- 811: arivv DEAH cvsnw VI08_VACCC : 296- 299: gtlii DEVH ehdqi VI08_VACCV : 296- 299: gtlii DEVH ehdqi VI08_VARV : 296- 299: gtlii DEVH ehdqi XPD_HUMAN : 234- 237: avvvf DEAH nidnv YABC_SCHPO : 651- 654: arivi DEAH cvshw YHF0_YEAST : 121- 124: gyliv DELH nfete YIS2_YEAST : 209- 212: vclvi DEAH ratgs YKH8_YEAST : 203- 206: svivi DEAH ertvl YKQ0_CAEEL : 355- 358: svili DEAH ersmy YMS2_CAEEL : 561- 564: saiim DEAH ersln D 4: 12.5102 29( 26) D-E-x-H Occurences: 29(26) CHL1_YEAST : 393- 396: sivii DEaH nliet ETF1_FOWP1 : 135- 138: sifii DEaH nifgn ETF1_SFVKA : 135- 138: aifii DEaH nifgn ETF1_VACCC : 135- 138: sifiv DEaH nifgn ETF1_VACCV : 135- 138: sifiv DEaH nifgn ETF1_VARV : 135- 138: sifiv DEaH nifgn HRPA_ECOLI : 178- 181: dtiii DEaH ehsln HRPA_ECOLI : 522- 525: kqqas DEkH rrfhd HRPA_HAEIN : 179- 182: sclii DEaH ersln HRPA_HAEIN : 438- 441: fvdap DErH iqdgv HRPA_HAEIN : 524- 527: kqqas DEkH rrfad MLE_DROME : 507- 510: shiiv DEiH erdvn PR02_YEAST : 346- 349: scimi DEaH ertla PR16_YEAST : 473- 476: scvii DEaH ersln PR22_YEAST : 603- 606: sviml DEaH ertva PRH1_SCHPO : 216- 219: htlil DEaH ertlm RAD3_YEAST : 235- 238: sivif DEaH nidnv RNHA_HUMAN : 511- 514: shviv DEiH erdin SGS1_YEAST : 808- 811: arivv DEaH cvsnw VI08_VACCC : 296- 299: gtlii DEvH ehdqi VI08_VACCV : 296- 299: gtlii DEvH ehdqi VI08_VARV : 296- 299: gtlii DEvH ehdqi XPD_HUMAN : 234- 237: avvvf DEaH nidnv YABC_SCHPO : 651- 654: arivi DEaH cvshw YHF0_YEAST : 121- 124: gyliv DElH nfete YIS2_YEAST : 209- 212: vclvi DEaH ratgs YKH8_YEAST : 203- 206: svivi DEaH ertvl YKQ0_CAEEL : 355- 358: svili DEaH ersmy YMS2_CAEEL : 561- 564: saiim DEaH ersln E 5: 12.0102 29( 26) Q-x(2,3)-R-x(2)-R Occurences: 29(26) CHL1_YEAST : 797- 804: mkavn QsvgRaiR handy ETF1_FOWP1 : 449- 456: fsqyn QilgRsiR kfsyk ETF1_SFVKA : 449- 456: fsqyn QilgRsiR kfsyk ETF1_VACCC : 450- 457: fsqyn QilgRsiR kfsya ETF1_VACCV : 450- 457: fsqyn QilgRsiR kfsya ETF1_VARV : 450- 457: fsqyn QilgRsiR kfsyv HRPA_ECOLI : 375- 382: qasan QrkgRcgR vsegi HRPA_HAEIN : 197- 204: lgylk QllpRrrR dlkli HRPA_HAEIN : 375- 382: qasan QrkgRcgR vsegi MLE_DROME : 764- 771: ktnle QrkgRagR vrpgf PR02_YEAST : 548- 555: rasvd QragRagR vgpgk PR16_YEAST : 685- 692: kanad QrsgRagR tapgt PR22_YEAST : 801- 808: pisqa QanqRkgR agrtg PR22_YEAST : 804- 811: qaqan QrkgRagR tgpgk PRH1_SCHPO : 417- 424: qsaam QrsgRagR eaagq RAD3_YEAST : 664- 671: mrhaa QclgRvlR gkddy RNHA_HUMAN : 759- 766: ktnle QrkgRagR stagf SGS1_YEAST : 216- 222: dakrl Qls-RdiR pqlsn SGS1_YEAST : 986- 993: legyy QetgRagR dgnys VI08_VACCC : 491- 498: ksmrd QrkgRvgR vnpgt VI08_VACCV : 491- 498: ksmrd QrkgRvgR vnpgt VI08_VARV : 491- 498: ksmrd QrkgRvgR vnpgt XPD_HUMAN : 662- 669: mrhaa QcvgRaiR gktdy YABC_SCHPO : 829- 836: legyy QetgRagR dgkpa YHF0_YEAST : 571- 577: qyvkl Qfs-RhhR qlrsr YIS2_YEAST : 603- 610: pikni QrmgRtgR krdgk YKH8_YEAST : 407- 414: qasam QrsgRagR esegk YKQ0_CAEEL : 654- 661: qasgd QragRagR isagh YMS2_CAEEL : 762- 769: qasan QrtgRagR tgpgq F 6: 12.0102 70( 26) L-x(2)-L-x(2,3)-L Occurences: 70(26) CHL1_YEAST : 340- 347: qdied LvpLgksL gicpy CHL1_YEAST : 441- 447: gnrvn LlkLns-L lmtli CHL1_YEAST : 441- 448: gnrvn LlkLnslL mtliq CHL1_YEAST : 444- 451: vnllk LnsLlmtL iqfiv CHL1_YEAST : 538- 544: kvsqf LycLtn-L tsegq ETF1_FOWP1 : 24- 30: ilphq LatLdy-L lrtil ETF1_FOWP1 : 24- 31: ilphq LatLdylL rtild ETF1_FOWP1 : 279- 285: mtnvs LavLgp-L nlans ETF1_SFVKA : 24- 30: ilphq LatLdy-L vrgii ETF1_SFVKA : 279- 285: mnnvs LavLgq-L nlinn ETF1_VACCC : 24- 30: ilphq LatLdy-L vrtii ETF1_VACCV : 24- 30: ilphq LatLdy-L vrtii ETF1_VARV : 24- 30: ilphq LatLdy-L vrtii HRPA_ECOLI : 191- 197: nidfl LgyLke-L lprrp HRPA_ECOLI : 191- 198: nidfl LgyLkelL prrpd HRPA_ECOLI : 466- 473: asayk LtpLgrqL sqlpv HRPA_ECOLI : 914- 920: vkple LplLds-L erelr HRPA_ECOLI : 917- 924: lelpl LdsLereL rrmtg HRPA_ECOLI : 966- 973: kegrs LqdLkdaL kgkvq HRPA_ECOLI : 1047- 1053: amwng LrrLll-L nipsp HRPA_HAEIN : 192- 198: nndfi LgyLkq-L lprrr HRPA_HAEIN : 192- 199: nndfi LgyLkqlL prrrr HRPA_HAEIN : 922- 929: lekpl LdtLiyeL rrmtg HRPA_HAEIN : 971- 978: aesmn LdeLkfnL kdrvq HRPA_HAEIN : 1052- 1058: amqqg LrrLll-L nvpsp HRPA_HAEIN : 1188- 1195: sgydr LpdLqryL qavdk MLE_DROME : 491- 498: tvgvl LrkLeagL rgvsh MLE_DROME : 852- 858: dande LtpLgr-L larlp MLE_DROME : 852- 859: dande LtpLgrlL arlpi MLE_DROME : 855- 862: deltp LgrLlarL piepr MLE_DROME : 1001- 1008: vldvs LalLclgL ypnic PR02_YEAST : 620- 626: tlrks LenLyi-L galns PR02_YEAST : 623- 629: kslen LyiLga-L nskgt PR16_YEAST : 27- 33: ltpgl LltLqk-L aqkpn PR16_YEAST : 728- 734: nlsnt LllLks-L dvtde PR16_YEAST : 755- 761: plqtf LssLye-L wfiga PR16_YEAST : 941- 947: hptsa LhgLgd-L ppyvv PR22_YEAST : 873- 879: pknlm LnaLte-L yhlqs PR22_YEAST : 876- 882: lmlna LteLyh-L qsldd PR22_YEAST : 879- 885: nalte LyhLqs-L ddegk PRH1_SCHPO : 485- 491: skegl LraLeh-L ysiga PRH1_SCHPO : 512- 519: gyqms LipLlpsL aravl PRH1_SCHPO : 573- 579: segdl LtcLna-L rqyle PRH1_SCHPO : 576- 583: dlltc LnaLrqyL esshd RAD3_YEAST : 83- 89: eieka LveLen-L mdyrt RAD3_YEAST : 335- 342: hfvsf LkrLieyL ktrmk RAD3_YEAST : 360- 366: tpksf LqhLkq-L tfier RAD3_YEAST : 381- 388: fcser LslLvrtL evtev RNHA_HUMAN : 835- 841: eaeht LreLda-L dande RNHA_HUMAN : 847- 854: dande LtpLgriL aklpi SGS1_YEAST : 1282- 1289: mtyer LreLslnL gnrmv VI08_VACCC : 586- 593: ieyak LyvLspiL aeeld VI08_VACCV : 586- 593: ieyak LyvLspiL aeeld VI08_VARV : 586- 593: ieyak LyvLspiL aeeld XPD_HUMAN : 102- 109: qegek LpfLglaL ssrkn XPD_HUMAN : 177- 183: agiyn LddLka-L grrqg XPD_HUMAN : 330- 336: taehf LgfLrr-L leyvk XPD_HUMAN : 330- 337: taehf LgfLrrlL eyvkw XPD_HUMAN : 379- 386: fcaer LrsLlhtL eitdl XPD_HUMAN : 738- 744: qlgls LlsLeq-L eseet YABC_SCHPO : 268- 274: phqnl LqyLdi-L rdeks YABC_SCHPO : 580- 586: lmqdq LdhLrk-L nipsl YABC_SCHPO : 1122- 1128: vmtrc LkdLkl-L rsnlm YABC_SCHPO : 1125- 1132: rclkd LklLrsnL maidd YHF0_YEAST : 611- 617: hwtaf LsmLig-L fynkt YIS2_YEAST : 820- 826: rtges LttLkp-L hnfer YKH8_YEAST : 216- 222: ltdli LgfLks-L iqgpr YKH8_YEAST : 478- 484: aivmg LqeLye-L galdt YKH8_YEAST : 481- 487: mglqe LyeLga-L dtrgk YKH8_YEAST : 502- 509: gqqma LlpLqphL ssvli YKH8_YEAST : 566- 572: krygd LimLke-L fdiyf YKQ0_CAEEL : 728- 734: saekr LcrLga-L sestk YKQ0_CAEEL : 829- 835: tgarr LgdLkv-L mhaas YKQ0_CAEEL : 1049- 1055: yryfa LflLdg-L vfekl YMS2_CAEEL : 41- 47: psgks LlgLdr-L astkr YMS2_CAEEL : 837- 843: nsmyq LwtLga-L dntgq G 7: 12.0102 37( 26) G-K-x(0,1)-T Occurences: 37(26) CHL1_YEAST : 47- 49: sptgt GK-T lslic ETF1_FOWP1 : 50- 52: himgs GK-T iiall ETF1_SFVKA : 50- 52: himgs GK-T iiall ETF1_VACCC : 50- 52: himgs GK-T iiall ETF1_VACCV : 50- 52: himgs GK-T iiall ETF1_VARV : 50- 52: himgs GK-T iiall HRPA_ECOLI : 86- 88: getgs GK-T tqlpk HRPA_ECOLI : 86- 89: getgs GKtT qlpki HRPA_HAEIN : 87- 89: getgs GK-T tqlpk HRPA_HAEIN : 87- 90: getgs GKtT qlpkm MLE_DROME : 412- 414: gntgc GK-T tqiaq MLE_DROME : 412- 415: gntgc GKtT qiaqy PR02_YEAST : 251- 253: getgs GK-T tqlpq PR02_YEAST : 251- 254: getgs GKtT qlpqy PR16_YEAST : 378- 380: getgs GK-T tqlaq PR16_YEAST : 378- 381: getgs GKtT qlaqy PR22_YEAST : 469- 472: esisy GKrT slpis PR22_YEAST : 511- 513: getgs GK-T tqitq PR22_YEAST : 511- 514: getgs GKtT qitqy PR22_YEAST : 657- 659: iinip GK-T fpvev PR22_YEAST : 889- 892: sldde GKlT nlgke PRH1_SCHPO : 124- 127: getgs GKsT qipqf RAD3_YEAST : 47- 49: mpsgt GK-T vslls RNHA_HUMAN : 416- 418: gatgc GK-T tqvpq RNHA_HUMAN : 416- 419: gatgc GKtT qvpqf SGS1_YEAST : 719- 721: avvks GK-T hgtti VI08_VACCC : 140- 143: fsnsv GKrT dtigv VI08_VACCC : 190- 192: ggtgv GK-T sqvpk VI08_VACCV : 140- 143: fsnsv GKrT dtigv VI08_VACCV : 190- 192: ggtgv GK-T sqvpk VI08_VARV : 140- 143: fsnsv GKrT dtigv VI08_VARV : 190- 192: ggtgv GK-T sqvpk XPD_HUMAN : 47- 49: mpsgt GK-T vslla XPD_HUMAN : 670- 672: grair GK-T dyglm YABC_SCHPO : 941- 944: lksis GKaT llqlm YHF0_YEAST : 16- 18: appgy GK-T elfhl YIS2_YEAST : 112- 114: iptgm GK-T fiast YKH8_YEAST : 109- 112: getgs GKsT qipqf YKH8_YEAST : 491- 494: aldtr GKiT krgqq YKQ0_CAEEL : 123- 125: lkvfs GK-T kteak YKQ0_CAEEL : 264- 266: getgs GK-T tqipq YKQ0_CAEEL : 264- 267: getgs GKtT qipqf YKQ0_CAEEL : 741- 743: estkn GK-T earit YKQ0_CAEEL : 751- 753: ritkl GK-T lavfp YMS2_CAEEL : 469- 471: getgs GK-T tqlaq YMS2_CAEEL : 469- 472: getgs GKtT qlaqy H 8: 11.5102 62( 26) L-x(0,1)-L-x(4,5)-K Occurences: 62(26) CHL1_YEAST : 108- 114: qekvd L-Lndye-K hlnei CHL1_YEAST : 205- 212: sqiit L-LdkidgK vsrdp CHL1_YEAST : 720- 728: egrgs LlLaivggK lsegi CHL1_YEAST : 721- 728: grgsl L-LaivggK lsegi ETF1_FOWP1 : 293- 300: ansle L-LfveqdK elypn ETF1_FOWP1 : 504- 510: fdikk L-Lylkf-K tketk ETF1_FOWP1 : 505- 512: dikkl LyLkfkt-K etkri ETF1_FOWP1 : 599- 605: vfeks L-Lykhk-K ETF1_SFVKA : 504- 510: fdikk L-Lylkf-K tketn ETF1_SFVKA : 505- 512: dikkl LyLkfkt-K etnri ETF1_VACCC : 506- 512: fdikk L-Lylkf-K tketn ETF1_VACCC : 507- 514: dikkl LyLkfkt-K etnri ETF1_VACCV : 506- 512: fdikk L-Lylkf-K tketn ETF1_VACCV : 507- 514: dikkl LyLkfkt-K etnri ETF1_VARV : 506- 512: fdikk L-Lylkf-K tketn ETF1_VARV : 507- 514: dikkl LyLkfkt-K etnri HRPA_ECOLI : 610- 617: alltg L-LshigmK dadkq HRPA_HAEIN : 612- 619: allsg L-LshiglK eaekq HRPA_HAEIN : 1229- 1235: qayqq L-Laklp-K skpis MLE_DROME : 643- 650: ellea L-LmhiksK nipga PR02_YEAST : 222- 229: qeark L-LpvhqyK dellq PR02_YEAST : 232- 238: qykde L-Lqeik-K nqvli PR16_YEAST : 26- 32: eltpg L-Lltlq-K laqkp PR16_YEAST : 28- 36: tpgll LtLqklaqK pntnl PR16_YEAST : 65- 72: iifne L-LellknK seeds PR16_YEAST : 313- 320: amgev LgLennn-K akdks PR16_YEAST : 459- 466: llret L-LddtldK yscvi PR22_YEAST : 589- 596: lqrea L-LdpemsK ysvim PR22_YEAST : 618- 625: dvlfa L-LkkaaiK rpelk PRH1_SCHPO : 228- 234: lmtdm L-Lgfvk-K iikkr RAD3_YEAST : 114- 122: tsrkn LcLhpevsK erkgt RAD3_YEAST : 181- 188: fsfek L-LkyceeK tlcpy RAD3_YEAST : 581- 588: aqets LaLetyr-K acsng RAD3_YEAST : 598- 605: grgai L-LsvargK vsegi RNHA_HUMAN : 113- 120: hhggp L-LhilalK aenns RNHA_HUMAN : 1064- 1072: tlvpp LqLllfasK kvqsd RNHA_HUMAN : 1066- 1072: vpplq L-Llfas-K kvqsd RNHA_HUMAN : 1066- 1073: vpplq LlLfask-K vqsdg RNHA_HUMAN : 1066- 1073: vpplq L-LlfaskK vqsdg RNHA_HUMAN : 1067- 1073: pplql L-Lfask-K vqsdg SGS1_YEAST : 514- 521: vehid L-LeddleK daild SGS1_YEAST : 545- 552: mshsd LeLidse-K enedf SGS1_YEAST : 742- 748: dqveh L-Lnkni-K asmfs VI08_VACCC : 572- 579: etwnk L-LsnyymK mieya VI08_VACCC : 615- 622: vreai LsLnlri-K ilnfk VI08_VACCV : 572- 579: etwnk L-LsnyymK mieya VI08_VACCV : 615- 622: vreai LsLnlri-K ilnfk VI08_VARV : 572- 579: etwnk L-LsnyymK mieya VI08_VARV : 615- 622: vqeai LsLnlri-K ilnfk XPD_HUMAN : 90- 96: eelrk L-Lnfye-K qegek XPD_HUMAN : 105- 113: eklpf LgLalssrK nlcih XPD_HUMAN : 596- 603: grgai L-LsvargK vsegi YABC_SCHPO : 478- 485: sldrp L-LgemkdK nhkvl YABC_SCHPO : 935- 942: lqaik L-LksisgK atllq YABC_SCHPO : 1149- 1155: ftdsv L-Lsmak-K lprnv YHF0_YEAST : 23- 31: telfh LpLialasK gdvey YHF0_YEAST : 334- 341: gsqmv L-LerkklK aqfpn YHF0_YEAST : 595- 603: hlrdq LaLgvtpsK vphwt YIS2_YEAST : 164- 170: dqtai L-Ldksr-K nreei YKH8_YEAST : 554- 561: vnerr LsLcnag-K rygdl YKQ0_CAEEL : 394- 402: imsat LrLddfthK klfpl YKQ0_CAEEL : 407- 414: kklfp L-LtpkviK vdarq YKQ0_CAEEL : 1088- 1095: krtem L-LnklieK evttr YMS2_CAEEL : 576- 583: dvlfg L-LreviaK radlk I 9: 11.5102 53( 26) K-x(2,3)-E-x(1,2)-L Occurences: 53(26) CHL1_YEAST : 567- 573: lleps Kpf-EsiL nqakc ETF1_FOWP1 : 393- 399: vtskm KsslEd-L levyn ETF1_FOWP1 : 393- 400: vtskm KsslEdlL evyns ETF1_FOWP1 : 593- 599: ffvtn Kvf-EksL lykhk ETF1_SFVKA : 393- 399: vtskm KaslEd-L lvtyn ETF1_SFVKA : 393- 400: vtskm KaslEdlL vtyns ETF1_SFVKA : 556- 562: hhsri KqndEr-L ltavk ETF1_SFVKA : 556- 563: hhsri KqndErlL tavks ETF1_VACCC : 394- 400: vtskm KsslEd-L ldvyn ETF1_VACCC : 394- 401: vtskm KsslEdlL dvyns ETF1_VACCV : 394- 400: vtskm KsslEd-L ldvyn ETF1_VACCV : 394- 401: vtskm KsslEdlL dvyns ETF1_VARV : 394- 400: vtskm KsslEd-L ldvyn ETF1_VARV : 394- 401: vtskm KsslEdlL dvyns HRPA_ECOLI : 910- 916: flgrv Kpl-ElpL ldsle HRPA_ECOLI : 976- 981: dalkg Kvq-Et-L savad HRPA_ECOLI : 1060- 1066: ipspi KylhEk-L pnkak HRPA_ECOLI : 1131- 1137: vvdia Kqv-EqiL tavfn HRPA_ECOLI : 1195- 1200: lqaie Krl-Ek-L avdph HRPA_HAEIN : 296- 301: qkqnl Kht-Ei-L plfar HRPA_HAEIN : 447- 452: iqdgv Kll-Ee-L gafet HRPA_HAEIN : 461- 467: etvqt Ksg-EkrL ltrvg HRPA_HAEIN : 805- 810: kkgaa Kdp-El-L nfehs HRPA_HAEIN : 1065- 1071: vpspi KylhEk-L pnkak MLE_DROME : 254- 260: sgtlk KkkdEq-L kpypv MLE_DROME : 255- 260: gtlkk Kkd-Eq-L kpypv MLE_DROME : 1112- 1118: kigal KpalEd-L itvac PR02_YEAST : 195- 202: llpee KlqyEarL aqale PR02_YEAST : 618- 623: iptlr Ksl-En-L yilga PR16_YEAST : 344- 350: skddi KhtkEq-L pvfrc PR22_YEAST : 642- 648: tlnsa Kfs-EyfL ncpii PRH1_SCHPO : 399- 405: kqfns KlglEs-L tvqpi PRH1_SCHPO : 612- 619: ildir KqlrEhcL kdgwe RAD3_YEAST : 183- 190: fekll KyceEktL cpyfi RAD3_YEAST : 336- 342: fvsfl KrliEy-L ktrmk RNHA_HUMAN : 392- 398: llpvk KfesEi-L eaisq RNHA_HUMAN : 641- 646: ieall Kyi-Et-L nvpga SGS1_YEAST : 429- 435: trdee KeenEl-L nqsdf SGS1_YEAST : 598- 605: ldndl KiitErkL tgdne VI08_VACCC : 410- 417: qchey KsylEkrL pydmy VI08_VACCV : 410- 417: qchey KsylEkrL pydmy VI08_VARV : 410- 417: qchey KsylEkrL pydmy XPD_HUMAN : 82- 87: vpeie Kvi-Ee-L rklln XPD_HUMAN : 96- 102: lnfye KqegEk-L pflgl XPD_HUMAN : 274- 281: tvlri KetdEqrL rdeyr XPD_HUMAN : 634- 640: qsril KarlEy-L rdqfq YABC_SCHPO : 637- 644: itrvl KslyErkL lariv YABC_SCHPO : 1098- 1104: ihsrn KidlEe-L sgqkf YHF0_YEAST : 185- 190: dinel Krs-Ed-L srgls YIS2_YEAST : 281- 288: mkkrk KekiEvpL lleie YIS2_YEAST : 413- 420: ilkni KnqcEnyL sdpkf YIS2_YEAST : 506- 511: apkgr Kkv-Er-L hrqeq YKH8_YEAST : 76- 81: asdll Kmr-Et-L pvyqh YKQ0_CAEEL : 75- 81: srkal KqtqEe-L fagla YKQ0_CAEEL : 483- 488: vyetd Kng-Ev-L vkgtk YKQ0_CAEEL : 934- 941: qeevq KgayEttL ikghv YKQ0_CAEEL : 1083- 1088: waklq Krt-Em-L lnkli YKQ0_CAEEL : 1083- 1089: waklq Krt-EmlL nklie YMS2_CAEEL : 435- 441: meksi KqqrEy-L pvfac YMS2_CAEEL : 855- 861: tpmgr Kmv-EfpL dptls J 10: 11.5102 58( 26) L-x(1,3)-E-L Occurences: 58(26) CHL1_YEAST : 195- 198: dkdyk Ls--EL nsqii ETF1_FOWP1 : 3- 8: mn LeilEL fnghi ETF1_FOWP1 : 225- 230: isyye LcdtEL psiif ETF1_FOWP1 : 313- 318: indgv LygdEL tklni ETF1_FOWP1 : 541- 544: itdvv Lg--EL vrqff ETF1_SFVKA : 313- 318: inngv LygeEL vtlni ETF1_VACCC : 314- 319: inngv LygeEL vtlni ETF1_VACCC : 542- 546: sivkv Llg-EL vrqff ETF1_VACCC : 543- 546: ivkvl Lg--EL vrqff ETF1_VACCV : 314- 319: inngv LygeEL vtlni ETF1_VACCV : 542- 546: sivkv Llg-EL vrqff ETF1_VACCV : 543- 546: ivkvl Lg--EL vrqff ETF1_VARV : 314- 319: inngv LygeEL vtlni ETF1_VARV : 542- 546: sivkv Llg-EL vrqff ETF1_VARV : 543- 546: ivkvl Lg--EL vrqff HRPA_ECOLI : 194- 197: fllgy Lk--EL lprrp HRPA_ECOLI : 448- 452: qdgvr Lle-EL gaitt HRPA_ECOLI : 449- 452: dgvrl Le--EL gaitt HRPA_ECOLI : 721- 725: qidpa Lcr-EL firha HRPA_ECOLI : 875- 879: wqipg Lrr-EL viali HRPA_ECOLI : 920- 924: pllds Ler-EL rrmtg HRPA_HAEIN : 128- 132: riaee Let-EL gglvg HRPA_HAEIN : 448- 452: qdgvk Lle-EL gafet HRPA_HAEIN : 449- 452: dgvkl Le--EL gafet HRPA_HAEIN : 880- 884: wqipg Lre-EL viali HRPA_HAEIN : 925- 929: plldt Liy-EL rrmtg HRPA_HAEIN : 971- 974: aesmn Ld--EL kfnlk MLE_DROME : 201- 204: harsf La--EL siyvp PR02_YEAST : 571- 574: tkwsy Lh--EL elmpk PR02_YEAST : 571- 576: tkwsy LhelEL mpkpe PR16_YEAST : 17- 22: difke LtskEL tpgll PR16_YEAST : 65- 68: iifne Ll--EL lknks PR16_YEAST : 189- 192: lvpep Ls--EL peeak PR16_YEAST : 758- 761: tflss Ly--EL wfiga PR22_YEAST : 876- 879: lmlna Lt--EL yhlqs PRH1_SCHPO : 197- 201: ltdgm Llr-EL indpi PRH1_SCHPO : 198- 201: tdgml Lr--EL indpi RAD3_YEAST : 83- 86: eieka Lv--EL enlmd RNHA_HUMAN : 364- 368: qismd Lkn-EL myqle RNHA_HUMAN : 382- 387: dlqai LqerEL lpvkk RNHA_HUMAN : 835- 838: eaeht Lr--EL dalda SGS1_YEAST : 1282- 1285: mtyer Lr--EL slnlg VI08_VACCC : 593- 597: vlspi Lae-EL dnfer VI08_VACCV : 593- 597: vlspi Lae-EL dnfer VI08_VARV : 593- 597: vlspi Lae-EL dnfer XPD_HUMAN : 220- 225: pkiad LvskEL arkav YABC_SCHPO : 728- 732: kpkkd Lyt-EL yrfis YABC_SCHPO : 1101- 1104: rnkid Le--EL sgqkf YABC_SCHPO : 1196- 1201: ekeqn LegtEL dpslq YHF0_YEAST : 118- 123: vklgy LivdEL hnfet YIS2_YEAST : 978- 983: sqsft LsnaEL ddilg YKH8_YEAST : 184- 188: ltdgm Llr-EL mmnsd YKH8_YEAST : 185- 188: tdgml Lr--EL mmnsd YKH8_YEAST : 478- 481: aivmg Lq--EL yelga YKH8_YEAST : 481- 484: mglqe Ly--EL galdt YKH8_YEAST : 569- 572: gdlim Lk--EL fdiyf YKQ0_CAEEL : 1026- 1030: vtfgp Lnw-EL pnenr YMS2_CAEEL : 674- 677: mikek Lg--EL deapp YMS2_CAEEL : 1051- 1054: vdaiw La--EL gpmfy K 11: 11.5102 51( 26) V-x(0,1)-L-x(1,2)-L Occurences: 51(26) CHL1_YEAST : 439- 444: npgnr VnLlkL nsllm ETF1_FOWP1 : 277- 282: knmtn VsLavL gplnl ETF1_FOWP1 : 281- 285: nvsla V-LgpL nlans ETF1_FOWP1 : 539- 544: pyitd VvLgeL vrqff ETF1_FOWP1 : 540- 544: yitdv V-LgeL vrqff ETF1_SFVKA : 277- 282: knmnn VsLavL gqlnl ETF1_SFVKA : 281- 285: nvsla V-LgqL nlinn ETF1_VACCC : 211- 215: ergvn V-LkdL lkgri ETF1_VACCC : 282- 286: nvsta V-LgqL nlmnn ETF1_VACCC : 541- 546: psivk VlLgeL vrqff ETF1_VACCV : 211- 215: ergvn V-LkdL lkgri ETF1_VACCV : 282- 286: nvsma V-LgqL nlmnn ETF1_VACCV : 541- 546: psivk VlLgeL vrqff ETF1_VARV : 211- 215: ergvn V-LkdL lkgri ETF1_VARV : 282- 286: nvsma V-LgqL nlmnn ETF1_VARV : 541- 546: psivk VlLgeL vrqff HRPA_ECOLI : 1082- 1085: npygk V-Le-L iddci HRPA_HAEIN : 1087- 1090: tpfgr V-Ld-L iddci MLE_DROME : 489- 494: fctvg VlLrkL eaglr MLE_DROME : 999- 1003: dpvld VsLa-L lclgl MLE_DROME : 999- 1004: dpvld VsLalL clgly PR02_YEAST : 591- 594: nlsnt V-Ll-L lslgv PR02_YEAST : 591- 595: nlsnt VlLl-L slgvt PR02_YEAST : 591- 595: nlsnt V-LllL slgvt PR16_YEAST : 312- 315: tamge V-Lg-L ennnk PR22_YEAST : 100- 104: vvtef V-LsiL nksks PR22_YEAST : 614- 618: tvatd V-LfaL lkkaa PRH1_SCHPO : 355- 360: eqqlq VfLpaL anhrk PRH1_SCHPO : 459- 462: dlsqa V-Lt-L kargq RAD3_YEAST : 50- 55: gtgkt VsLlsL tiayq RAD3_YEAST : 84- 89: iekal VeLenL mdyrt RNHA_HUMAN : 493- 498: fctvg VlLrkL eagir RNHA_HUMAN : 652- 656: nvpga V-LvfL pgwnl SGS1_YEAST : 666- 670: pwsde V-LyrL hevfk VI08_VACCC : 223- 227: fherp ViLs-L prial VI08_VACCV : 223- 227: fherp ViLs-L prial VI08_VARV : 223- 227: fherp ViLs-L prial XPD_HUMAN : 50- 55: gtgkt VsLlaL imayq YABC_SCHPO : 315- 319: qkiss V-LevL snnnn YABC_SCHPO : 507- 511: pwske V-LgcL khkfh YABC_SCHPO : 614- 618: lmakn V-LvkL lyvtp YABC_SCHPO : 635- 639: gaitr V-LksL yerkl YHF0_YEAST : 113- 118: frtnn VkLgyL ivdel YHF0_YEAST : 353- 357: senmn V-LqfL gfrsd YHF0_YEAST : 659- 664: adntr VpLymL mvavh YIS2_YEAST : 286- 290: kekie VpLl-L eiedi YIS2_YEAST : 875- 878: dknnm V-Ls-L ddwnf YKH8_YEAST : 118- 122: qipqf V-LekL ydtkk YKH8_YEAST : 210- 214: ahert V-LtdL ilgfl YKH8_YEAST : 449- 452: dvtsp V-Lm-L krygv YKQ0_CAEEL : 696- 699: padql V-Lh-L ksmni YMS2_CAEEL : 572- 576: slntd V-LfgL lrevi YMS2_CAEEL : 804- 808: tnlan VvLl-L kslgv YMS2_CAEEL : 805- 808: nlanv V-Ll-L kslgv L 12: 11.5102 46( 26) T-x(3)-L-x(0,2)-L Occurences: 46(26) CHL1_YEAST : 46- 52: esptg TgktLs-L icatm ETF1_FOWP1 : 26- 31: phqla TldyL--L rtild ETF1_FOWP1 : 52- 57: mgsgk TiiaL--L faliv ETF1_FOWP1 : 275- 282: feknm TnvsLavL gplnl ETF1_FOWP1 : 537- 544: phpyi TdvvLgeL vrqff ETF1_SFVKA : 52- 57: mgsgk TiiaL--L falva ETF1_VACCC : 52- 57: mgsgk TiiaL--L falva ETF1_VACCV : 52- 57: mgsgk TiiaL--L falva ETF1_VARV : 52- 57: mgsgk TiiaL--L falia HRPA_ECOLI : 155- 160: mvklm TdgiL--L aeiqq HRPA_ECOLI : 286- 293: eeipd TadaLnkL nlrht HRPA_HAEIN : 156- 161: qiklm TdgiL--L aeiqn MLE_DROME : 486- 491: ailfc TvgvL--L rklea MLE_DROME : 808- 814: hemal TiklLr-L gsihh PR02_YEAST : 100- 105: nnelt TkkgL--L gdsen PR02_YEAST : 323- 328: vlkym TdgmL--L reflt PR02_YEAST : 590- 595: tnlsn TvllL--L slgvt PR02_YEAST : 590- 597: tnlsn TvllLlsL gvtdl PR16_YEAST : 23- 28: tskel TpglL--L tlqkl PR16_YEAST : 23- 30: tskel TpglLltL qklaq PR16_YEAST : 450- 455: klkfv TdgiL--L retll PR16_YEAST : 727- 734: tnlsn TlllLksL dvtde PR16_YEAST : 769- 776: igaid TsgqLtpL glqma PR22_YEAST : 97- 104: ddpvv TefvLsiL nksks PRH1_SCHPO : 193- 198: rikyl TdgmL--L relin PRH1_SCHPO : 646- 651: lsgyi TntaL--L hpdgs RAD3_YEAST : 49- 55: sgtgk TvslLs-L tiayq RNHA_HUMAN : 490- 495: simfc TvgvL--L rklea RNHA_HUMAN : 520- 527: erdin TsflLvvL rdvvq RNHA_HUMAN : 834- 841: ieaeh TlreLdaL dande SGS1_YEAST : 1278- 1285: nnlrm TyerLreL slnlg VI08_VACCC : 568- 573: diste TwnkL--L snyym VI08_VACCV : 568- 573: diste TwnkL--L snyym VI08_VARV : 568- 573: diste TwnkL--L snyym XPD_HUMAN : 49- 55: sgtgk TvslLa-L imayq XPD_HUMAN : 457- 464: qsvii TsgtLspL diypk XPD_HUMAN : 702- 708: iqehl TdanLn-L tvdeg YABC_SCHPO : 1145- 1150: vssyf TdsvL--L smakk YHF0_YEAST : 657- 664: laadn TrvpLymL mvavh YIS2_YEAST : 816- 823: taiir TgesLttL kplhn YKH8_YEAST : 172- 179: dnttt TrtrLkyL tdgml YKH8_YEAST : 180- 185: rlkyl TdgmL--L relmm YKH8_YEAST : 212- 219: ertvl TdliLgfL ksliq YKH8_YEAST : 446- 452: arsdv TspvLm-L krygv YKQ0_CAEEL : 381- 387: plrsk TarpLr-L vimsa YKQ0_CAEEL : 400- 407: rlddf ThkkLfpL ltpkv YKQ0_CAEEL : 1085- 1092: klqkr TemlLnkL iekev YMS2_CAEEL : 538- 543: iikym TdgiL--L reclg M 13: 11.5102 69( 26) T-x(3,4)-L-x(2,3)-L Occurences: 69(26) CHL1_YEAST : 377- 385: llses Trss-LqinL ensiv ETF1_FOWP1 : 26- 35: phqla TldylLrtiL dhnes ETF1_FOWP1 : 52- 60: mgsgk TiialLfa-L ivskf ETF1_FOWP1 : 52- 60: mgsgk Tiia-LlfaL ivskf ETF1_FOWP1 : 82- 91: ilnif TynldLatnL intey ETF1_FOWP1 : 275- 282: feknm Tnvs-Lav-L gplnl ETF1_FOWP1 : 537- 544: phpyi Tdvv-Lge-L vrqff ETF1_SFVKA : 52- 60: mgsgk TiialLfa-L vasrf ETF1_SFVKA : 52- 60: mgsgk Tiia-LlfaL vasrf ETF1_VACCC : 52- 60: mgsgk TiialLfa-L vasrf ETF1_VACCC : 52- 60: mgsgk Tiia-LlfaL vasrf ETF1_VACCC : 491- 499: slndy Tqde-LinvL pfdik ETF1_VACCV : 52- 60: mgsgk TiialLfa-L vasrf ETF1_VACCV : 52- 60: mgsgk Tiia-LlfaL vasrf ETF1_VACCV : 491- 499: slndy Tqde-LinvL pfdik ETF1_VARV : 52- 60: mgsgk TiialLfa-L iasrf ETF1_VARV : 52- 60: mgsgk Tiia-LlfaL iasrf ETF1_VARV : 491- 499: slndy Tqde-LinvL pfdik HRPA_ECOLI : 286- 293: eeipd Tada-Lnk-L nlrht HRPA_ECOLI : 298- 307: lnlrh TeilpLyarL snseq HRPA_ECOLI : 404- 413: srpef TdpeiLrtnL asvil HRPA_ECOLI : 852- 860: dadgv TvhipLpl-L nqvee HRPA_HAEIN : 298- 307: qnlkh TeilpLfarL saqeq HRPA_HAEIN : 404- 413: srpef TdpeiLrtnL asvil HRPA_HAEIN : 857- 865: dadgv TvhipLpl-L nqvem HRPA_HAEIN : 1143- 1152: veqil TltyqLnqrL kgkmd MLE_DROME : 486- 494: ailfc TvgvlLrk-L eaglr MLE_DROME : 486- 494: ailfc Tvgv-LlrkL eaglr MLE_DROME : 529- 537: rdmvd Typd-LhviL msati MLE_DROME : 853- 862: andel TplgrLlarL piepr PR02_YEAST : 323- 332: vlkym TdgmlLrefL tdskl PR02_YEAST : 566- 574: cfrif TkwsyLhe-L elmpk PR02_YEAST : 590- 597: tnlsn Tvll-Lls-L gvtdl PR02_YEAST : 615- 623: kpsip TlrksLen-L yilga PR16_YEAST : 18- 26: ifkel Tske-LtpgL lltlq PR16_YEAST : 23- 30: tskel Tpgl-Llt-L qklaq PR16_YEAST : 450- 459: klkfv TdgilLretL lddtl PR16_YEAST : 727- 734: tnlsn Tlll-Lks-L dvtde PR16_YEAST : 753- 761: kpplq TflssLye-L wfiga PR16_YEAST : 769- 776: igaid Tsgq-Ltp-L glqma PR22_YEAST : 97- 104: ddpvv Tefv-Lsi-L nksks PR22_YEAST : 877- 885: mlnal TelyhLqs-L ddegk PRH1_SCHPO : 15- 23: nggsi Tkqn-LtdgL vggqr PRH1_SCHPO : 193- 201: rikyl TdgmlLre-L indpi PRH1_SCHPO : 193- 201: rikyl Tdgm-LlreL indpi PRH1_SCHPO : 294- 302: daclr Tifq-LhtkL ppgdi PRH1_SCHPO : 574- 583: egdll TclnaLrqyL esshd RAD3_YEAST : 355- 363: hvise TpksfLqh-L kqltf RAD3_YEAST : 630- 639: ipfqy TesriLkarL efmre RNHA_HUMAN : 490- 498: simfc TvgvlLrk-L eagir RNHA_HUMAN : 490- 498: simfc Tvgv-LlrkL eagir RNHA_HUMAN : 520- 527: erdin Tsfl-Lvv-L rdvvq RNHA_HUMAN : 631- 639: lneke Tpfe-LieaL lkyie RNHA_HUMAN : 834- 841: ieaeh Tlre-Lda-L dande RNHA_HUMAN : 1059- 1067: sakgm TlvppLql-L lfask RNHA_HUMAN : 1059- 1068: sakgm TlvppLqllL faskk SGS1_YEAST : 1278- 1285: nnlrm Tyer-Lre-L slnlg VI08_VACCC : 279- 287: givfs ThklsLtk-L fsygt VI08_VACCV : 279- 287: givfs ThklsLtk-L fsygt VI08_VARV : 279- 287: givfs ThklsLtk-L fsygt XPD_HUMAN : 325- 333: pgsir TaehfLgf-L rrlle XPD_HUMAN : 457- 464: qsvii Tsgt-Lsp-L diypk XPD_HUMAN : 628- 637: vpyvy TqsriLkarL eylrd YABC_SCHPO : 4- 12: mtv Tktn-LnrhL dwffr YHF0_YEAST : 110- 118: ectfr TnnvkLgy-L ivdel YHF0_YEAST : 622- 630: lfynk TfrqkLey-L leqis YHF0_YEAST : 622- 631: lfynk TfrqkLeylL eqise YHF0_YEAST : 657- 664: laadn Trvp-Lym-L mvavh YIS2_YEAST : 816- 823: taiir Tges-Ltt-L kplhn YKH8_YEAST : 171- 179: fdntt TtrtrLky-L tdgml YKH8_YEAST : 172- 179: dnttt Trtr-Lky-L tdgml YKH8_YEAST : 180- 188: rlkyl TdgmlLre-L mmnsd YKH8_YEAST : 180- 188: rlkyl Tdgm-LlreL mmnsd YKH8_YEAST : 212- 219: ertvl Tdli-Lgf-L ksliq YKQ0_CAEEL : 77- 85: kalkq Tqee-LfagL aefql YKQ0_CAEEL : 400- 407: rlddf Thkk-Lfp-L ltpkv YKQ0_CAEEL : 400- 408: rlddf Thkk-LfplL tpkvi YKQ0_CAEEL : 824- 832: rwcsh TgarrLgd-L kvlmh YKQ0_CAEEL : 1022- 1030: ktvkv Tfgp-LnweL pnenr YKQ0_CAEEL : 1085- 1092: klqkr Teml-Lnk-L iekev YMS2_CAEEL : 538- 547: iikym TdgilLrecL gdgsl N 14: 11.5102 77( 26) L-x(2,3)-L-x(0,1)-I Occurences: 77(26) CHL1_YEAST : 343- 349: edlvp LgksLgI cpyya CHL1_YEAST : 447- 452: lklns LlmtL-I qfivk CHL1_YEAST : 448- 452: klnsl Lmt-L-I qfivk ETF1_FOWP1 : 56- 61: ktiia LlfaL-I vskfk ETF1_FOWP1 : 57- 61: tiial Lfa-L-I vskfk ETF1_FOWP1 : 87- 92: tynld LatnL-I nteyv ETF1_FOWP1 : 302- 308: eqdke LypnLkI ndgvl ETF1_FOWP1 : 318- 323: lygde Ltk-LnI sskfk ETF1_FOWP1 : 521- 526: riysi Lkd-LsI nyrss ETF1_SFVKA : 287- 293: lgqln LinnLdI lfqeq ETF1_SFVKA : 302- 308: eqdke LypnLkI nngvl ETF1_SFVKA : 318- 323: lygee Lvt-LnI sskfk ETF1_VACCC : 303- 309: eqdke LypnLkI nngvl ETF1_VACCC : 319- 324: lygee Lvt-LnI sskfk ETF1_VACCV : 303- 309: eqdke LypnLkI nngvl ETF1_VACCV : 319- 324: lygee Lvt-LnI sskfk ETF1_VARV : 56- 61: ktiia LlfaL-I asrfk ETF1_VARV : 57- 61: tiial Lfa-L-I asrfk ETF1_VARV : 303- 309: eqdke LypnLkI nngvl ETF1_VARV : 319- 324: lygee Lvt-LnI sskfk HRPA_ECOLI : 721- 727: qidpa LcreLfI rhalv HRPA_ECOLI : 875- 881: wqipg LrreLvI aliks HRPA_ECOLI : 879- 884: glrre LviaL-I kslpk HRPA_ECOLI : 1050- 1055: nglrr Lll-LnI pspik HRPA_HAEIN : 568- 573: cqkdf Lny-LrI rewqd HRPA_HAEIN : 677- 682: ewiep LaehL-I kksys HRPA_HAEIN : 880- 886: wqipg LreeLvI aliks HRPA_HAEIN : 884- 889: glree LviaL-I kslpk HRPA_HAEIN : 921- 926: plekp LldtL-I yelrr HRPA_HAEIN : 922- 926: lekpl Ldt-L-I yelrr MLE_DROME : 201- 206: harsf Lae-LsI yvpal MLE_DROME : 267- 272: pypvk LspnL-I nkide MLE_DROME : 858- 864: tplgr LlarLpI eprlg MLE_DROME : 859- 864: plgrl Lar-LpI eprlg MLE_DROME : 1115- 1119: alkpa Led-L-I tvacd PR02_YEAST : 372- 376: pqrpt Lkl-L-I ssatm PR02_YEAST : 620- 625: tlrks Len-LyI lgaln PR02_YEAST : 668- 674: qcqgv LeecLtI vsmlh PR16_YEAST : 359- 363: rcrsq Lls-L-I renqv PR16_YEAST : 670- 675: npkig Lds-LvI tpisk PR16_YEAST : 789- 795: plqps LskiLlI avrng PR22_YEAST : 448- 453: neiqm LknqL-I vtewe PRH1_SCHPO : 197- 202: ltdgm LlreL-I ndpil PRH1_SCHPO : 198- 202: tdgml Lre-L-I ndpil PRH1_SCHPO : 320- 324: deiea Lea-L-I ksysk PRH1_SCHPO : 604- 610: inrra LktiLdI rkqlr RAD3_YEAST : 52- 57: gktvs Lls-LtI ayqmh RAD3_YEAST : 335- 339: hfvsf Lkr-L-I eylkt RNHA_HUMAN : 854- 859: plgri Lak-LpI eprfg RNHA_HUMAN : 959- 964: eakvq LkeiL-I nsgfp SGS1_YEAST : 181- 186: levir LqgsL-I malke SGS1_YEAST : 593- 599: adiqe LdndLkI iterk VI08_VACCC : 538- 544: kfnlt LpedLfI iptnl VI08_VACCC : 615- 621: vreai LslnLrI kilnf VI08_VACCV : 538- 544: kfnlt LpedLfI iptnl VI08_VACCV : 615- 621: vreai LslnLrI kilnf VI08_VARV : 538- 544: kfnlt LpedLfI iptnl VI08_VARV : 615- 621: vqeai LslnLrI kilnf XPD_HUMAN : 52- 56: gktvs Lla-L-I mayqr XPD_HUMAN : 382- 388: erlrs LlhtLeI tdlad XPD_HUMAN : 383- 388: rlrsl Lht-LeI tdlad XPD_HUMAN : 461- 466: itsgt Lsp-LdI ypkil YABC_SCHPO : 267- 273: wphqn LlqyLdI lrdek YABC_SCHPO : 268- 273: phqnl Lqy-LdI lrdek YABC_SCHPO : 583- 588: dqldh Lrk-LnI pslpl YHF0_YEAST : 115- 119: tnnvk Lgy-L-I vdelh YHF0_YEAST : 611- 615: hwtaf Lsm-L-I glfyn YIS2_YEAST : 364- 369: nvgqm Lkr-LkI ygirt YIS2_YEAST : 638- 642: edyst Lqa-L-I skqci YKH8_YEAST : 211- 215: hertv Ltd-L-I lgflk YKH8_YEAST : 219- 223: lilgf Lks-L-I qgprp YKH8_YEAST : 509- 514: plqph LssvL-I kasev YKQ0_CAEEL : 1088- 1093: krtem LlnkL-I ekevt YKQ0_CAEEL : 1089- 1093: rteml Lnk-L-I ekevt YMS2_CAEEL : 683- 688: deapp Lav-LpI ysqlp YMS2_CAEEL : 865- 870: pldpt LskmL-I msaem YMS2_CAEEL : 965- 970: eimqd LklpL-I sngse O 15: 11.5102 75( 26) L-x(1,2)-L-x(0,1)-S Occurences: 75(26) CHL1_YEAST : 195- 200: dkdyk LseLnS qiitl CHL1_YEAST : 250- 254: qftsq Lr-LpS fpssf CHL1_YEAST : 271- 275: ekvky Lp-LaS kkqlc CHL1_YEAST : 441- 446: gnrvn LlkLnS llmtl CHL1_YEAST : 442- 446: nrvnl Lk-LnS llmtl CHL1_YEAST : 541- 546: qflyc LtnLtS egqff ETF1_FOWP1 : 161- 164: nkvpf Ll-L-S gspit ETF1_FOWP1 : 521- 525: riysi LkdL-S inyrs ETF1_SFVKA : 161- 164: nkipf Ll-L-S gspit ETF1_VACCC : 161- 164: nkipf Ll-L-S gspit ETF1_VACCC : 415- 420: ddgsq LmfLfS snims ETF1_VACCV : 161- 164: nkipf Ll-L-S gspit ETF1_VACCV : 415- 420: ddgsq LmfLfS snims ETF1_VARV : 161- 164: nkipf Ll-L-S gspit ETF1_VARV : 415- 420: ddgsq LmfLfS snims HRPA_ECOLI : 607- 612: ihial LtgLlS higmk HRPA_ECOLI : 836- 839: qgnlk Lr-L-S yqfep HRPA_ECOLI : 914- 919: vkple LplLdS lerel HRPA_ECOLI : 1157- 1160: dmtma Lg-L-S dikaq HRPA_HAEIN : 609- 614: ihtal LsgLlS higlk MLE_DROME : 201- 205: harsf LaeL-S iyvpa MLE_DROME : 811- 816: altik LlrLgS ihhfl MLE_DROME : 812- 816: ltikl Lr-LgS ihhfl PR02_YEAST : 372- 377: pqrpt LklLiS satmn PR02_YEAST : 592- 596: lsntv LllL-S lgvtd PR02_YEAST : 592- 596: lsntv Ll-LlS lgvtd PR02_YEAST : 593- 596: sntvl Ll-L-S lgvtd PR02_YEAST : 626- 631: enlyi LgaLnS kgtit PR02_YEAST : 835- 839: vlyqq Lm-LtS kefir PR16_YEAST : 51- 55: ascka LtkL-S snnpi PR16_YEAST : 51- 56: ascka LtkLsS nnpii PR16_YEAST : 728- 733: nlsnt LllLkS ldvtd PR16_YEAST : 729- 733: lsntl Ll-LkS ldvtd PR16_YEAST : 883- 888: irdql LtiLkS qkipv PR22_YEAST : 879- 884: nalte LyhLqS lddeg PR22_YEAST : 1009- 1013: fkkig Lk-LiS chsdp PRH1_SCHPO : 400- 404: qfnsk Lg-LeS ltvqp PRH1_SCHPO : 488- 493: gllra LehLyS igald PRH1_SCHPO : 563- 568: aiear LkfLhS egdll PRH1_SCHPO : 636- 639: vnsen Ll-L-S flsgy PRH1_SCHPO : 638- 642: senll LsfL-S gyitn RAD3_YEAST : 106- 110: edfrg Lg-LtS rknlc RAD3_YEAST : 706- 709: lsdad Ln-L-S tdmai RNHA_HUMAN : 683- 687: hryqi Lp-LhS qipre SGS1_YEAST : 215- 218: edakr Lq-L-S rdirp SGS1_YEAST : 1051- 1054: dcrrk Lv-L-S yfned SGS1_YEAST : 1282- 1286: mtyer LreL-S lnlgn VI08_VACCC : 232- 237: lpria LvrLhS ntilk VI08_VACCC : 284- 289: thkls LtkLfS ygtli VI08_VACCC : 586- 590: ieyak LyvL-S pilae VI08_VACCV : 232- 237: lpria LvrLhS ntilk VI08_VACCV : 284- 289: thkls LtkLfS ygtli VI08_VACCV : 586- 590: ieyak LyvL-S pilae VI08_VARV : 232- 237: lpria LvrLhS ntilk VI08_VARV : 284- 289: thkls LtkLfS ygtli VI08_VARV : 586- 590: ieyak LyvL-S pilae XPD_HUMAN : 107- 110: lpflg La-L-S srknl XPD_HUMAN : 107- 111: lpflg La-LsS rknlc XPD_HUMAN : 734- 737: hredq Lg-L-S llsle XPD_HUMAN : 736- 740: edqlg LslL-S leqle XPD_HUMAN : 736- 740: edqlg Ls-LlS leqle XPD_HUMAN : 741- 746: lslls LeqLeS eetlk YABC_SCHPO : 316- 320: kissv LevL-S nnnns YABC_SCHPO : 591- 594: lnips Lp-L-S geqpa YABC_SCHPO : 707- 711: rmenc Le-LkS sfnrp YABC_SCHPO : 1101- 1105: rnkid LeeL-S gqkfm YABC_SCHPO : 1125- 1130: rclkd LklLrS nlmai YHF0_YEAST : 25- 30: lfhlp LiaLaS kgdve YIS2_YEAST : 638- 643: edyst LqaLiS kqcid YKH8_YEAST : 216- 221: ltdli LgfLkS liqgp YKQ0_CAEEL : 95- 99: ldpsk LcqL-S sstkl YKQ0_CAEEL : 95- 100: ldpsk LcqLsS stkls YKQ0_CAEEL : 578- 582: eplyc Lp-LyS llsmg YKQ0_CAEEL : 580- 585: lyclp LysLlS mgkqr YKQ0_CAEEL : 697- 701: adqlv Lh-LkS mnivk YKQ0_CAEEL : 731- 735: krlcr LgaL-S estkn YKQ0_CAEEL : 782- 787: shail LisLlS vrepl YMS2_CAEEL : 44- 49: ksllg LdrLaS tkreh YMS2_CAEEL : 806- 810: lanvv Ll-LkS lgvdd YMS2_CAEEL : 967- 971: mqdlk Lp-LiS ngsew P 16: 11.5102 60( 26) L-x(1,2)-L-x(0,1)-I Occurences: 60(26) CHL1_YEAST : 50- 53: gtgkt Ls-L-I catmt CHL1_YEAST : 448- 452: klnsl LmtL-I qfivk CHL1_YEAST : 720- 724: egrgs Ll-LaI vggkl ETF1_FOWP1 : 57- 61: tiial LfaL-I vskfk ETF1_FOWP1 : 318- 323: lygde LtkLnI sskfk ETF1_FOWP1 : 521- 526: riysi LkdLsI nyrss ETF1_SFVKA : 285- 288: avlgq Ln-L-I nnldi ETF1_SFVKA : 318- 323: lygee LvtLnI sskfk ETF1_VACCC : 319- 324: lygee LvtLnI sskfk ETF1_VACCV : 319- 324: lygee LvtLnI sskfk ETF1_VARV : 57- 61: tiial LfaL-I asrfk ETF1_VARV : 319- 324: lygee LvtLnI sskfk HRPA_ECOLI : 1050- 1055: nglrr LllLnI pspik HRPA_ECOLI : 1051- 1055: glrrl Ll-LnI pspik HRPA_ECOLI : 1083- 1086: pygkv Le-L-I ddcis HRPA_HAEIN : 206- 209: rrrrd Lk-L-I itsat HRPA_HAEIN : 206- 210: rrrrd Lk-LiI tsati HRPA_HAEIN : 568- 573: cqkdf LnyLrI rewqd HRPA_HAEIN : 922- 926: lekpl LdtL-I yelrr HRPA_HAEIN : 1088- 1091: pfgrv Ld-L-I ddcia MLE_DROME : 201- 206: harsf LaeLsI yvpal MLE_DROME : 859- 864: plgrl LarLpI eprlg MLE_DROME : 1115- 1119: alkpa LedL-I tvacd PR02_YEAST : 372- 376: pqrpt LklL-I ssatm PR02_YEAST : 372- 376: pqrpt Lk-LlI ssatm PR02_YEAST : 620- 625: tlrks LenLyI lgaln PR02_YEAST : 706- 710: esdhi Ly-LeI fnqwr PR16_YEAST : 359- 363: rcrsq LlsL-I renqv PR16_YEAST : 360- 363: crsql Ls-L-I renqv PR16_YEAST : 499- 502: arrrd Lk-L-I itsat PR16_YEAST : 499- 503: arrrd Lk-LiI tsatm PR16_YEAST : 670- 675: npkig LdsLvI tpisk PR22_YEAST : 1009- 1012: fkkig Lk-L-I schsd PRH1_SCHPO : 198- 202: tdgml LreL-I ndpil PRH1_SCHPO : 320- 324: deiea LeaL-I ksysk RAD3_YEAST : 52- 57: gktvs LlsLtI ayqmh RAD3_YEAST : 53- 57: ktvsl Ls-LtI ayqmh RAD3_YEAST : 335- 339: hfvsf LkrL-I eylkt RNHA_HUMAN : 293- 297: niiqe Ln-LeI lpppe RNHA_HUMAN : 854- 859: plgri LakLpI eprfg SGS1_YEAST : 545- 548: mshsd Le-L-I dseke VI08_VACCC : 617- 621: eails Ln-LrI kilnf VI08_VACCV : 617- 621: eails Ln-LrI kilnf VI08_VARV : 617- 621: eails Ln-LrI kilnf XPD_HUMAN : 52- 56: gktvs LlaL-I mayqr XPD_HUMAN : 53- 56: ktvsl La-L-I mayqr XPD_HUMAN : 383- 388: rlrsl LhtLeI tdlad XPD_HUMAN : 461- 466: itsgt LspLdI ypkil YABC_SCHPO : 268- 273: phqnl LqyLdI lrdek YABC_SCHPO : 583- 588: dqldh LrkLnI pslpl YHF0_YEAST : 23- 26: telfh Lp-L-I alask YHF0_YEAST : 115- 119: tnnvk LgyL-I vdelh YHF0_YEAST : 611- 615: hwtaf LsmL-I glfyn YIS2_YEAST : 288- 292: kievp Ll-LeI ediie YIS2_YEAST : 364- 369: nvgqm LkrLkI ygirt YIS2_YEAST : 638- 642: edyst LqaL-I skqci YKH8_YEAST : 211- 215: hertv LtdL-I lgflk YKH8_YEAST : 219- 223: lilgf LksL-I qgprp YKQ0_CAEEL : 385- 389: ktarp Lr-LvI msatl YKQ0_CAEEL : 1089- 1093: rteml LnkL-I ekevt YMS2_CAEEL : 587- 590: akrad Lk-L-I vtsat YMS2_CAEEL : 683- 688: deapp LavLpI ysqlp YMS2_CAEEL : 967- 970: mqdlk Lp-L-I sngse Q 17: 11.5102 67( 26) I-x(0,1)-L-x(2,3)-L Occurences: 67(26) CHL1_YEAST : 410- 415: iyssq IsLed-L knchk ETF1_FOWP1 : 19- 24: dnipn I-LphqL atldy ETF1_FOWP1 : 54- 60: sgkti IaLlfaL ivskf ETF1_FOWP1 : 520- 524: kriys I-Lkd-L sinyr ETF1_SFVKA : 19- 24: nnipn I-LphqL atldy ETF1_SFVKA : 54- 60: sgkti IaLlfaL vasrf ETF1_VACCC : 19- 24: dsipt I-LphqL atldy ETF1_VACCC : 54- 60: sgkti IaLlfaL vasrf ETF1_VACCV : 19- 24: dsipt I-LphqL atldy ETF1_VACCV : 54- 60: sgkti IaLlfaL vasrf ETF1_VARV : 19- 24: dsipt I-LphqL atldy ETF1_VARV : 54- 60: sgkti IaLlfaL iasrf HRPA_ECOLI : 408- 413: ftdpe I-LrtnL asvil HRPA_ECOLI : 604- 610: yreih IaLltgL lshig HRPA_ECOLI : 855- 860: gvtvh IpLpl-L nqvee HRPA_ECOLI : 881- 887: rrelv IaLiksL pkpvr HRPA_HAEIN : 191- 195: lnndf I-Lgy-L kqllp HRPA_HAEIN : 408- 413: ftdpe I-LrtnL asvil HRPA_HAEIN : 860- 865: gvtvh IpLpl-L nqvem HRPA_HAEIN : 886- 892: reelv IaLiksL pksyr MLE_DROME : 301- 307: ldgpp IpLivnL srids MLE_DROME : 656- 660: nipga I-Lvf-L pgwnl MLE_DROME : 809- 814: emalt IkLlr-L gsihh PR02_YEAST : 357- 361: tlatd I-Lig-L lkdil PR02_YEAST : 357- 362: tlatd I-LiglL kdilp PR02_YEAST : 438- 442: slpgd I-Lvf-L tgqee PR02_YEAST : 625- 629: lenly I-Lga-L nskgt PR16_YEAST : 453- 459: fvtdg IlLretL lddtl PR16_YEAST : 668- 673: vynpk IgLds-L vitpi PR22_YEAST : 694- 698: egpgd I-Lvf-L tgqee PRH1_SCHPO : 307- 311: lppgd I-Lvf-L tgqde PRH1_SCHPO : 513- 519: yqmsl IpLlpsL aravl RAD3_YEAST : 634- 639: ytesr I-LkarL efmre RNHA_HUMAN : 800- 806: tplhe IaLsikL lrlgg RNHA_HUMAN : 804- 809: eials IkLlr-L ggigq RNHA_HUMAN : 853- 857: tplgr I-Lak-L piepr SGS1_YEAST : 179- 185: iklev IrLqgsL imalk SGS1_YEAST : 269- 274: niiss I-LpspL eynts VI08_VACCC : 121- 125: sfdey I-Lrg-L leagn VI08_VACCC : 121- 126: sfdey I-LrglL eagns VI08_VACCC : 158- 163: ypfsk IpLas-L tpkaq VI08_VACCC : 230- 235: lslpr IaLvr-L hsnti VI08_VACCC : 240- 244: lhsnt I-Lks-L gfkvl VI08_VACCC : 592- 597: yvlsp I-LaeeL dnfer VI08_VACCC : 614- 619: ivrea I-LslnL rikil VI08_VACCV : 121- 125: sfdey I-Lrg-L leagn VI08_VACCV : 121- 126: sfdey I-LrglL eagns VI08_VACCV : 158- 163: ypfsk IpLas-L tpkaq VI08_VACCV : 230- 235: lslpr IaLvr-L hsnti VI08_VACCV : 240- 244: lhsnt I-Lks-L gfkvl VI08_VACCV : 592- 597: yvlsp I-LaeeL dnfer VI08_VACCV : 614- 619: ivrea I-LslnL rikil VI08_VARV : 121- 125: sfdey I-Lrg-L leagn VI08_VARV : 121- 126: sfdey I-LrglL eagns VI08_VARV : 158- 163: ypfsk IpLas-L tpkaq VI08_VARV : 230- 235: lslpr IaLvr-L hsnti VI08_VARV : 240- 244: lhsnt I-Lks-L gfkvl VI08_VARV : 592- 597: yvlsp I-LaeeL dnfer VI08_VARV : 614- 619: ivqea I-LslnL rikil XPD_HUMAN : 632- 637: ytqsr I-LkarL eylrd YABC_SCHPO : 1099- 1104: hsrnk IdLee-L sgqkf YHF0_YEAST : 169- 174: aalqr IgLtg-L akksm YIS2_YEAST : 353- 357: wrnff I-Lql-L nnvgq YKH8_YEAST : 215- 219: vltdl I-Lgf-L ksliq YKH8_YEAST : 295- 299: eelgd I-Lcf-L pgqee YKH8_YEAST : 567- 572: rygdl ImLke-L fdiyf YKH8_YEAST : 645- 650: elisk I-LkcfL tgfik YKH8_YEAST : 711- 716: rnvsr IeLsw-L qevvt YKQ0_CAEEL : 780- 785: lmsha IlLis-L lsvre YKQ0_CAEEL : 780- 785: lmsha I-LlisL lsvre YKQ0_CAEEL : 780- 786: lmsha IlLislL svrep YMS2_CAEEL : 541- 547: ymtdg IlLrecL gdgsl YMS2_CAEEL : 1049- 1054: tavda IwLae-L gpmfy R 18: 11.5102 58( 26) I-x(0,2)-L-x(2)-L Occurences: 58(26) CHL1_YEAST : 337- 343: seiqd IedLvpL gkslg CHL1_YEAST : 410- 415: iyssq Is-LedL knchk ETF1_FOWP1 : 54- 60: sgkti IalLfaL ivskf ETF1_FOWP1 : 501- 507: tlpfd IkkLlyL kfktk ETF1_FOWP1 : 520- 524: kriys I--LkdL sinyr ETF1_SFVKA : 54- 60: sgkti IalLfaL vasrf ETF1_SFVKA : 288- 294: gqlnl InnLdiL fqeqd ETF1_SFVKA : 501- 507: tlpfd IkkLlyL kfktk ETF1_VACCC : 54- 60: sgkti IalLfaL vasrf ETF1_VACCC : 503- 509: vlpfd IkkLlyL kfktk ETF1_VACCV : 54- 60: sgkti IalLfaL vasrf ETF1_VACCV : 503- 509: vlpfd IkkLlyL kfktk ETF1_VARV : 54- 60: sgkti IalLfaL iasrf ETF1_VARV : 503- 509: vlpfd IkkLlyL kfktk HRPA_ECOLI : 604- 610: yreih IalLtgL lshig HRPA_ECOLI : 855- 860: gvtvh Ip-LplL nqvee HRPA_HAEIN : 191- 195: lnndf I--LgyL kqllp HRPA_HAEIN : 860- 865: gvtvh Ip-LplL nqvem MLE_DROME : 656- 660: nipga I--LvfL pgwnl MLE_DROME : 809- 814: emalt Ik-LlrL gsihh PR02_YEAST : 357- 361: tlatd I--LigL lkdil PR02_YEAST : 438- 442: slpgd I--LvfL tgqee PR02_YEAST : 625- 629: lenly I--LgaL nskgt PR16_YEAST : 668- 673: vynpk Ig-LdsL vitpi PR22_YEAST : 694- 698: egpgd I--LvfL tgqee PR22_YEAST : 722- 728: tlgds IgeLliL pvysa PRH1_SCHPO : 307- 311: lppgd I--LvfL tgqde PRH1_SCHPO : 317- 323: tgqde IeaLeaL iksys PRH1_SCHPO : 513- 519: yqmsl IplLpsL aravl RAD3_YEAST : 5- 11: mkfy IddLpvL fpypk RNHA_HUMAN : 804- 809: eials Ik-LlrL ggigq RNHA_HUMAN : 853- 857: tplgr I--LakL piepr SGS1_YEAST : 728- 734: gttiv IspLisL mqdqv SGS1_YEAST : 769- 775: tfnlf IngLldL vyisp VI08_VACCC : 121- 125: sfdey I--LrgL leagn VI08_VACCC : 158- 163: ypfsk Ip-LasL tpkaq VI08_VACCC : 230- 235: lslpr Ia-LvrL hsnti VI08_VACCC : 240- 244: lhsnt I--LksL gfkvl VI08_VACCV : 121- 125: sfdey I--LrgL leagn VI08_VACCV : 158- 163: ypfsk Ip-LasL tpkaq VI08_VACCV : 230- 235: lslpr Ia-LvrL hsnti VI08_VACCV : 240- 244: lhsnt I--LksL gfkvl VI08_VARV : 121- 125: sfdey I--LrgL leagn VI08_VARV : 158- 163: ypfsk Ip-LasL tpkaq VI08_VARV : 230- 235: lslpr Ia-LvrL hsnti VI08_VARV : 240- 244: lhsnt I--LksL gfkvl XPD_HUMAN : 84- 90: eiekv IeeLrkL lnfye XPD_HUMAN : 174- 180: plpag IynLddL kalgr YABC_SCHPO : 569- 575: gvtlv IspLlsL mqdql YABC_SCHPO : 1099- 1104: hsrnk Id-LeeL sgqkf YHF0_YEAST : 169- 174: aalqr Ig-LtgL akksm YIS2_YEAST : 353- 357: wrnff I--LqlL nnvgq YKH8_YEAST : 215- 219: vltdl I--LgfL ksliq YKH8_YEAST : 295- 299: eelgd I--LcfL pgqee YKH8_YEAST : 567- 572: rygdl Im-LkeL fdiyf YKH8_YEAST : 711- 716: rnvsr Ie-LswL qevvt YKQ0_CAEEL : 780- 785: lmsha Il-LisL lsvre YMS2_CAEEL : 1049- 1054: tavda Iw-LaeL gpmfy S 19: 11.5102 75( 26) S-x(1,3)-L-x(2)-L Occurences: 75(26) CHL1_YEAST : 408- 415: nsiys SqisLedL knchk CHL1_YEAST : 446- 451: llkln Sl--LmtL iqfiv CHL1_YEAST : 535- 541: llfkv Sqf-LycL tnlts CHL1_YEAST : 590- 596: tmepm Sef-LsnL lpevp ETF1_FOWP1 : 278- 285: nmtnv SlavLgpL nlans ETF1_FOWP1 : 394- 399: tskmk Ss--LedL levyn ETF1_FOWP1 : 519- 524: tkriy Si--LkdL sinyr ETF1_SFVKA : 278- 285: nmnnv SlavLgqL nlinn ETF1_VACCC : 279- 286: nmynv StavLgqL nlmnn ETF1_VACCC : 395- 400: tskmk Ss--LedL ldvyn ETF1_VACCC : 413- 418: enddg Sq--LmfL fssni ETF1_VACCV : 279- 286: nmynv SmavLgqL nlmnn ETF1_VACCV : 395- 400: tskmk Ss--LedL ldvyn ETF1_VACCV : 413- 418: enddg Sq--LmfL fssni ETF1_VARV : 279- 286: nmynv SmavLgqL nlmnn ETF1_VARV : 395- 400: tskmk Ss--LedL ldvyn ETF1_VARV : 413- 418: enddg Sq--LmfL fssni HRPA_ECOLI : 462- 469: tdeqa SaykLtpL grqls HRPA_HAEIN : 535- 541: fadkk Sdf-LafL nlwry HRPA_HAEIN : 968- 974: kkiae Smn-LdeL kfnlk HRPA_HAEIN : 1169- 1174: lsdik Sq--LagL vyqgf MLE_DROME : 199- 204: pehar Sf--LaeL siyvp MLE_DROME : 516- 523: erdvn SdflLviL rdmvd MLE_DROME : 636- 643: sesdv SfelLeaL lmhik MLE_DROME : 1000- 1006: pvldv Sla-LlcL glypn PR02_YEAST : 569- 574: iftkw Sy--LheL elmpk PR02_YEAST : 588- 595: trtnl SntvLllL slgvt PR02_YEAST : 619- 626: ptlrk SlenLyiL galns PR16_YEAST : 47- 54: eqfia SckaLtkL ssnnp PR16_YEAST : 282- 287: nakrg Sk--LvaL rrinm PR16_YEAST : 357- 362: vfrcr Sq--LlsL irenq PR16_YEAST : 725- 731: qrtnl Snt-LllL ksldv PR16_YEAST : 756- 761: lqtfl Ss--LyeL wfiga PR16_YEAST : 770- 776: gaidt Sgq-LtpL glqma PR16_YEAST : 840- 846: ffiak Sdh-LtlL nvfeq PR16_YEAST : 939- 944: qlhpt Sa--LhgL gdlpp PR22_YEAST : 721- 728: ktlgd SigeLliL pvysa PRH1_SCHPO : 398- 405: ikqfn SklgLesL tvqpi RAD3_YEAST : 333- 338: aehfv Sf--LkrL ieylk RAD3_YEAST : 358- 363: setpk Sf--LqhL kqltf RAD3_YEAST : 378- 384: plrfc Ser-LslL vrtle RNHA_HUMAN : 521- 527: rdint Sfl-LvvL rdvvq RNHA_HUMAN : 803- 809: heial Sik-LlrL ggigq SGS1_YEAST : 663- 670: ptypw SdevLyrL hevfk SGS1_YEAST : 729- 734: ttivi Sp--LisL mqdqv SGS1_YEAST : 1268- 1275: tsdlr StqeLnnL rmtye VI08_VACCC : 156- 163: nkypf SkipLasL tpkaq VI08_VACCC : 237- 244: lvrlh SntiLksL gfkvl VI08_VACCV : 156- 163: nkypf SkipLasL tpkaq VI08_VACCV : 237- 244: lvrlh SntiLksL gfkvl VI08_VARV : 156- 163: nkypf SkipLasL tpkaq VI08_VARV : 237- 244: lvrlh SntiLksL gfkvl XPD_HUMAN : 381- 386: aerlr Sl--LhtL eitdl XPD_HUMAN : 395- 400: dladf Sp--LtlL anfat XPD_HUMAN : 458- 464: sviit Sgt-LspL diypk XPD_HUMAN : 737- 744: dqlgl SllsLeqL eseet YABC_SCHPO : 76- 82: teehq Sss-LnnL kwkdv YABC_SCHPO : 77- 82: eehqs Ss--LnnL kwkdv YABC_SCHPO : 313- 319: lsqki Ssv-LevL snnnn YABC_SCHPO : 314- 319: sqkis Sv--LevL snnnn YABC_SCHPO : 504- 511: lsypw SkevLgcL khkfh YABC_SCHPO : 570- 575: vtlvi Sp--LlsL mqdql YABC_SCHPO : 1050- 1056: rslsr Skt-LpaL reyql YHF0_YEAST : 612- 617: wtafl Sm--LigL fynkt YIS2_YEAST : 232- 239: idrfn SsyrLlaL tatpa YIS2_YEAST : 233- 239: drfns Syr-LlaL tatpa YIS2_YEAST : 636- 641: amedy St--LqaL iskqc YIS2_YEAST : 819- 826: irtge SlttLkpL hnfer YKH8_YEAST : 709- 716: yarnv SrieLswL qevvt YKQ0_CAEEL : 93- 98: fqldp Sk--LcqL ssstk YMS2_CAEEL : 37- 44: kptep SgksLlgL drlas YMS2_CAEEL : 40- 47: epsgk SllgLdrL astkr YMS2_CAEEL : 383- 388: welag Sk--LgnL mgvke YMS2_CAEEL : 833- 840: dnmln SmyqLwtL galdn YMS2_CAEEL : 916- 922: fqvpe Sdh-LtfL nvyiq T 20: 11.5102 52( 26) K-x(1,2)-I-x(1,2)-S Occurences: 52(26) CHL1_YEAST : 36- 42: lsegk KiaIleS ptgtg ETF1_FOWP1 : 320- 325: gdelt KlnIs-S kfkyf ETF1_FOWP1 : 340- 346: gnltg KnfIyfS nstyg ETF1_FOWP1 : 515- 519: ktket Kr-Iy-S ilkdl ETF1_SFVKA : 340- 346: enlkg KhfIyfS nstyg ETF1_SFVKA : 356- 361: gglii Ky-ImlS ngyse ETF1_VACCC : 341- 347: qtlng KhfIyfS nstyg ETF1_VACCC : 357- 362: gglvi Ky-ImlS ngyse ETF1_VACCV : 341- 347: qtlng KhfIyfS nstyg ETF1_VACCV : 357- 362: gglvi Ky-ImlS ngyse ETF1_VARV : 341- 347: qtlng KhfIyfS nstyg ETF1_VARV : 357- 362: gglvi Ky-ImlS ngyse HRPA_ECOLI : 205- 210: rrpdl KiiIt-S atidp HRPA_ECOLI : 205- 210: rrpdl Ki-IitS atidp HRPA_HAEIN : 207- 212: rrrdl KliIt-S atidv HRPA_HAEIN : 207- 212: rrrdl Kl-IitS atidv HRPA_HAEIN : 486- 490: dprla Km-Il-S avnfg HRPA_HAEIN : 963- 968: vdeng Kk-IaeS mnlde MLE_DROME : 712- 716: pegvt Ki-Il-S tniae PR02_YEAST : 373- 378: qrptl KllIs-S atmna PR16_YEAST : 81- 86: dstgp Kk-IapS inkrk PR16_YEAST : 500- 505: rrrdl KliIt-S atmna PR16_YEAST : 500- 505: rrrdl Kl-IitS atmna PR16_YEAST : 834- 840: diarn KffIakS dhltl PR16_YEAST : 904- 909: dwdii KkcIc-S gfahq PR16_YEAST : 905- 909: wdiik Kc-Ic-S gfahq PR22_YEAST : 630- 635: krpel Kv-IvtS atlns PRH1_SCHPO : 451- 456: tipei Kr-IdlS qavlt RAD3_YEAST : 68- 73: ypehr Ki-IycS rtmse RNHA_HUMAN : 707- 711: pvgvt Kv-Il-S tniae SGS1_YEAST : 158- 164: srnnn KsvIdnS sigkq SGS1_YEAST : 199- 205: klllq KcsIieS tslse SGS1_YEAST : 745- 750: ehlln Kn-IkaS mfssr VI08_VACCC : 89- 94: inltt KqyIy-S ehtis VI08_VACCC : 272- 278: nkqpk KygIvfS thkls VI08_VACCC : 556- 561: ilwrt KeyId-S fdist VI08_VACCV : 89- 94: inlta KqyIy-S ehtis VI08_VACCV : 272- 278: nkqpk KygIvfS thkls VI08_VACCV : 556- 561: ilwrt KeyId-S fdist VI08_VARV : 89- 94: inlta KqyIy-S ehtis VI08_VARV : 272- 278: nkqpk KygIvfS thkls VI08_VARV : 556- 561: ilwrt KeyId-S fdist XPD_HUMAN : 69- 74: plevt Kl-IycS rtvpe YABC_SCHPO : 304- 309: kewip KrdIl-S qkiss YABC_SCHPO : 585- 590: ldhlr KlnIp-S lplsg YABC_SCHPO : 857- 861: hvtfq Kl-Im-S gdgda YHF0_YEAST : 149- 154: fdafe Ka-IflS gtape YIS2_YEAST : 22- 27: dklye Ka-InkS vketi YIS2_YEAST : 113- 118: ptgmg KtfIa-S tvmln YIS2_YEAST : 466- 470: aleiv Kf-Id-S vaddq YKH8_YEAST : 87- 92: pvyqh KreIm-S yiesn YKQ0_CAEEL : 227- 232: ivers Ke-IqkS raelp YMS2_CAEEL : 588- 593: kradl Kl-IvtS atmda YMS2_CAEEL : 867- 872: dptls KmlIm-S aemgc YMS2_CAEEL : 981- 985: wdivr Kc-Ic-S ayfhn Number of patterns evaluated by Pratt:14903 Total running time: 69 seconds