------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 26 sequences from file DDC_GAD_HDC_YDC PATTERN CONSERVATION: CM: min Nr of Seqs to Match 26 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DDC_GAD_HDC_YDC.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DCD1_DROME 508 DCD2_DROME 502 DCD_BOVIN 487 DCD_CAEEL 625 DCD_CATRO 500 DCD_CAVPO 480 DCD_HUMAN 480 DCD_PIG 485 DCD_RAT 480 DCEA_ECOLI 466 DCEB_ECOLI 466 DCE_DROME 510 DCE_FELCA 594 DCE_PETHY 500 DCE_RAT 593 DCHS_DROME 847 DCHS_ENTAE 377 DCHS_HUMAN 662 DCHS_KLEPL 377 DCHS_MORMO 377 DCHS_MOUSE 662 DCHS_RAT 656 TYD1_PETCR 432 TYD2_PETCR 514 TYD3_PETCR 516 TYD4_PETCR 508 Pratt run started at Thu Feb 6 19:16:06 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 26( 26) H-x-D-A-A-x(2)-G 2: 16.6802 26( 26) D-A-A-x(2)-G 3: 12.5102 30( 26) H-x-D-A 4: 12.5102 33( 26) A-A-x(2)-G 5: 12.0102 46( 26) S-x(3)-A-x(1,2)-L 6: 12.0102 31( 26) H-x(2)-A-x(2,3)-G 7: 12.0102 29( 26) H-x(2,3)-A-x(2)-G 8: 12.0102 26( 26) W-x(5)-A-x(1,2)-G 9: 12.0102 30( 26) H-x(0,1)-D-x(4)-G 10: 12.0102 34( 26) A-x-S-x(4,5)-P 11: 12.0102 38( 26) A-A-x(1,2)-G 12: 12.0102 31( 26) H-x(3,4)-A-x(2)-G 13: 11.5102 42( 26) L-x(2,3)-D-x(3,4)-L 14: 11.5102 43( 26) L-x(3,4)-I-x(2,3)-L 15: 11.5102 48( 26) S-x(3)-A-x(0,2)-L 16: 11.5102 48( 26) A-A-x(0,2)-G 17: 11.5102 36( 26) A-x(3,4)-I-x(1,2)-E 18: 11.5102 49( 26) A-x(0,1)-A-x(2,3)-G 19: 11.5102 44( 26) A-x(0,2)-A-x(2)-G 20: 11.5102 47( 26) A-x(2,3)-L-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 28.7837 26( 26) H-[AIV]-D-A-A-x-[AGS]-G-x-[AIL] B 2: 25.6183 26( 26) H-x(0,1)-D-A-A-x-[AGS]-G-x-[AIL] C 3: 21.9482 26( 26) D-A-A-x-[AGS]-G-x-[AIL] D 4: 21.5203 26( 26) H-[AIV]-D-A-x(2,3)-G-x-[AIL] E 5: 17.7782 26( 26) A-A-x-[AGS]-G-x-[AIL] F 6: 16.5077 26( 26) H-x(2,3)-A-x-[AGS]-G-[DGNST] G 7: 14.6881 26( 26) H-x(3,4)-A-x-[AGI]-G H 8: 14.6848 28( 26) A-A-x(1,2)-G-x-[AIL] I 9: 14.1848 33( 26) A-A-x(0,2)-G-x-[AIL] J 10: 13.7514 37( 26) A-x(0,2)-A-x(2)-G-x-[AGIL] K 11: 13.6594 26( 26) W-x(5)-A-x(1,2)-G-x-[AGILPV] L 12: 12.5102 30( 26) H-x-D-A M 13: 12.0102 46( 26) S-x(3)-A-x(1,2)-L N 14: 12.0102 34( 26) A-x-S-x(4,5)-P O 15: 11.5102 42( 26) L-x(2,3)-D-x(3,4)-L P 16: 11.5102 43( 26) L-x(3,4)-I-x(2,3)-L Q 17: 11.5102 48( 26) S-x(3)-A-x(0,2)-L R 18: 11.5102 36( 26) A-x(3,4)-I-x(1,2)-E S 19: 11.5102 49( 26) A-x(0,1)-A-x(2,3)-G T 20: 11.5102 44( 26) A-x(0,2)-A-x(2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 28.7837 26( 26) H-[AIV]-D-A-A-x-[AGS]-G-x-[AIL] Occurences: 26(26) DCD1_DROME : 301- 310: hnlwi HVDAAyAGsA ficpe DCD2_DROME : 295- 304: hnlwi HVDAAyAGsA ficpe DCD_BOVIN : 269- 278: eglwl HVDAAyAGsA ficpe DCD_CAEEL : 334- 343: hgtwl HVDAAyAGtA licpe DCD_CATRO : 285- 294: fgiwi HVDAAyAGsA cicpe DCD_CAVPO : 269- 278: eemwl HIDAAyAGsA ficpe DCD_HUMAN : 269- 278: ediwl HVDAAyAGsA ficpe DCD_PIG : 269- 278: ediwl HVDAAyAGsA ficpe DCD_RAT : 269- 278: egvwl HIDAAyAGsA ficpe DCEA_ECOLI : 241- 250: ididm HIDAAsGGfL apfva DCEB_ECOLI : 241- 250: ididm HIDAAsGGfL apfva DCE_DROME : 287- 296: yncwm HIDAAwGGgL lmsrt DCE_FELCA : 371- 380: ynlwl HVDAAwGGgL lmsrk DCE_PETHY : 242- 251: wdtpi HVDAAsGGfI apfiy DCE_RAT : 370- 379: ynlwl HVDAAwGGgL lmsrk DCHS_DROME : 270- 279: hhlwl HVDAAyAGsA ficpe DCHS_ENTAE : 198- 207: edyyl HADAAlSGmI lpfve DCHS_HUMAN : 271- 280: eglwl HIDAAyAGtA flcpe DCHS_KLEPL : 198- 207: kdyyl HADAAlSGmI lpfvd DCHS_MORMO : 198- 207: edyyl HADAAlSGmI lpfvd DCHS_MOUSE : 278- 287: eglwl HVDAAyAGtA flcpe DCHS_RAT : 274- 283: eglwl HVDAAyAGtA flrpe TYD1_PETCR : 260- 269: yklwv HVDAAyAGsA cicpe TYD2_PETCR : 283- 292: ydlwv HVDAAyAGsA cicpe TYD3_PETCR : 285- 294: ydlwv HVDAAyAGsA cicpe TYD4_PETCR : 284- 293: ydlwv HVDAAyAGsA cicpe B 2: 25.6183 26( 26) H-x(0,1)-D-A-A-x-[AGS]-G-x-[AIL] Occurences: 26(26) DCD1_DROME : 301- 310: hnlwi HvDAAyAGsA ficpe DCD2_DROME : 295- 304: hnlwi HvDAAyAGsA ficpe DCD_BOVIN : 269- 278: eglwl HvDAAyAGsA ficpe DCD_CAEEL : 334- 343: hgtwl HvDAAyAGtA licpe DCD_CATRO : 285- 294: fgiwi HvDAAyAGsA cicpe DCD_CAVPO : 269- 278: eemwl HiDAAyAGsA ficpe DCD_HUMAN : 269- 278: ediwl HvDAAyAGsA ficpe DCD_PIG : 269- 278: ediwl HvDAAyAGsA ficpe DCD_RAT : 269- 278: egvwl HiDAAyAGsA ficpe DCEA_ECOLI : 241- 250: ididm HiDAAsGGfL apfva DCEB_ECOLI : 241- 250: ididm HiDAAsGGfL apfva DCE_DROME : 287- 296: yncwm HiDAAwGGgL lmsrt DCE_FELCA : 371- 380: ynlwl HvDAAwGGgL lmsrk DCE_PETHY : 242- 251: wdtpi HvDAAsGGfI apfiy DCE_RAT : 370- 379: ynlwl HvDAAwGGgL lmsrk DCHS_DROME : 270- 279: hhlwl HvDAAyAGsA ficpe DCHS_ENTAE : 198- 207: edyyl HaDAAlSGmI lpfve DCHS_HUMAN : 271- 280: eglwl HiDAAyAGtA flcpe DCHS_KLEPL : 198- 207: kdyyl HaDAAlSGmI lpfvd DCHS_MORMO : 198- 207: edyyl HaDAAlSGmI lpfvd DCHS_MOUSE : 278- 287: eglwl HvDAAyAGtA flcpe DCHS_RAT : 274- 283: eglwl HvDAAyAGtA flrpe TYD1_PETCR : 260- 269: yklwv HvDAAyAGsA cicpe TYD2_PETCR : 283- 292: ydlwv HvDAAyAGsA cicpe TYD3_PETCR : 285- 294: ydlwv HvDAAyAGsA cicpe TYD4_PETCR : 284- 293: ydlwv HvDAAyAGsA cicpe C 3: 21.9482 26( 26) D-A-A-x-[AGS]-G-x-[AIL] Occurences: 26(26) DCD1_DROME : 303- 310: lwihv DAAyAGsA ficpe DCD2_DROME : 297- 304: lwihv DAAyAGsA ficpe DCD_BOVIN : 271- 278: lwlhv DAAyAGsA ficpe DCD_CAEEL : 336- 343: twlhv DAAyAGtA licpe DCD_CATRO : 287- 294: iwihv DAAyAGsA cicpe DCD_CAVPO : 271- 278: mwlhi DAAyAGsA ficpe DCD_HUMAN : 271- 278: iwlhv DAAyAGsA ficpe DCD_PIG : 271- 278: iwlhv DAAyAGsA ficpe DCD_RAT : 271- 278: vwlhi DAAyAGsA ficpe DCEA_ECOLI : 243- 250: idmhi DAAsGGfL apfva DCEB_ECOLI : 243- 250: idmhi DAAsGGfL apfva DCE_DROME : 289- 296: cwmhi DAAwGGgL lmsrt DCE_FELCA : 373- 380: lwlhv DAAwGGgL lmsrk DCE_PETHY : 244- 251: tpihv DAAsGGfI apfiy DCE_RAT : 372- 379: lwlhv DAAwGGgL lmsrk DCHS_DROME : 272- 279: lwlhv DAAyAGsA ficpe DCHS_ENTAE : 200- 207: yylha DAAlSGmI lpfve DCHS_HUMAN : 273- 280: lwlhi DAAyAGtA flcpe DCHS_KLEPL : 200- 207: yylha DAAlSGmI lpfvd DCHS_MORMO : 200- 207: yylha DAAlSGmI lpfvd DCHS_MOUSE : 280- 287: lwlhv DAAyAGtA flcpe DCHS_RAT : 276- 283: lwlhv DAAyAGtA flrpe TYD1_PETCR : 262- 269: lwvhv DAAyAGsA cicpe TYD2_PETCR : 285- 292: lwvhv DAAyAGsA cicpe TYD3_PETCR : 287- 294: lwvhv DAAyAGsA cicpe TYD4_PETCR : 286- 293: lwvhv DAAyAGsA cicpe D 4: 21.5203 26( 26) H-[AIV]-D-A-x(2,3)-G-x-[AIL] Occurences: 26(26) DCD1_DROME : 301- 310: hnlwi HVDAayaGsA ficpe DCD2_DROME : 295- 304: hnlwi HVDAayaGsA ficpe DCD_BOVIN : 269- 278: eglwl HVDAayaGsA ficpe DCD_CAEEL : 334- 343: hgtwl HVDAayaGtA licpe DCD_CATRO : 285- 294: fgiwi HVDAayaGsA cicpe DCD_CAVPO : 269- 278: eemwl HIDAayaGsA ficpe DCD_HUMAN : 269- 278: ediwl HVDAayaGsA ficpe DCD_PIG : 269- 278: ediwl HVDAayaGsA ficpe DCD_RAT : 269- 278: egvwl HIDAayaGsA ficpe DCEA_ECOLI : 241- 250: ididm HIDAasgGfL apfva DCEB_ECOLI : 241- 250: ididm HIDAasgGfL apfva DCE_DROME : 287- 296: yncwm HIDAawgGgL lmsrt DCE_FELCA : 371- 380: ynlwl HVDAawgGgL lmsrk DCE_PETHY : 242- 251: wdtpi HVDAasgGfI apfiy DCE_RAT : 370- 379: ynlwl HVDAawgGgL lmsrk DCHS_DROME : 270- 279: hhlwl HVDAayaGsA ficpe DCHS_ENTAE : 198- 207: edyyl HADAalsGmI lpfve DCHS_HUMAN : 271- 280: eglwl HIDAayaGtA flcpe DCHS_KLEPL : 198- 207: kdyyl HADAalsGmI lpfvd DCHS_MORMO : 198- 207: edyyl HADAalsGmI lpfvd DCHS_MOUSE : 278- 287: eglwl HVDAayaGtA flcpe DCHS_RAT : 274- 283: eglwl HVDAayaGtA flrpe TYD1_PETCR : 260- 269: yklwv HVDAayaGsA cicpe TYD2_PETCR : 283- 292: ydlwv HVDAayaGsA cicpe TYD3_PETCR : 285- 294: ydlwv HVDAayaGsA cicpe TYD4_PETCR : 284- 293: ydlwv HVDAayaGsA cicpe E 5: 17.7782 26( 26) A-A-x-[AGS]-G-x-[AIL] Occurences: 26(26) DCD1_DROME : 304- 310: wihvd AAyAGsA ficpe DCD2_DROME : 298- 304: wihvd AAyAGsA ficpe DCD_BOVIN : 272- 278: wlhvd AAyAGsA ficpe DCD_CAEEL : 337- 343: wlhvd AAyAGtA licpe DCD_CATRO : 288- 294: wihvd AAyAGsA cicpe DCD_CAVPO : 272- 278: wlhid AAyAGsA ficpe DCD_HUMAN : 272- 278: wlhvd AAyAGsA ficpe DCD_PIG : 272- 278: wlhvd AAyAGsA ficpe DCD_RAT : 272- 278: wlhid AAyAGsA ficpe DCEA_ECOLI : 244- 250: dmhid AAsGGfL apfva DCEB_ECOLI : 244- 250: dmhid AAsGGfL apfva DCE_DROME : 290- 296: wmhid AAwGGgL lmsrt DCE_FELCA : 374- 380: wlhvd AAwGGgL lmsrk DCE_PETHY : 245- 251: pihvd AAsGGfI apfiy DCE_RAT : 373- 379: wlhvd AAwGGgL lmsrk DCHS_DROME : 273- 279: wlhvd AAyAGsA ficpe DCHS_ENTAE : 201- 207: ylhad AAlSGmI lpfve DCHS_HUMAN : 274- 280: wlhid AAyAGtA flcpe DCHS_KLEPL : 201- 207: ylhad AAlSGmI lpfvd DCHS_MORMO : 201- 207: ylhad AAlSGmI lpfvd DCHS_MOUSE : 281- 287: wlhvd AAyAGtA flcpe DCHS_RAT : 277- 283: wlhvd AAyAGtA flrpe TYD1_PETCR : 263- 269: wvhvd AAyAGsA cicpe TYD2_PETCR : 286- 292: wvhvd AAyAGsA cicpe TYD3_PETCR : 288- 294: wvhvd AAyAGsA cicpe TYD4_PETCR : 287- 293: wvhvd AAyAGsA cicpe F 6: 16.5077 26( 26) H-x(2,3)-A-x-[AGS]-G-[DGNST] Occurences: 26(26) DCD1_DROME : 301- 309: hnlwi HvdaAyAGS aficp DCD2_DROME : 295- 303: hnlwi HvdaAyAGS aficp DCD_BOVIN : 269- 277: eglwl HvdaAyAGS aficp DCD_CAEEL : 334- 342: hgtwl HvdaAyAGT alicp DCD_CATRO : 285- 293: fgiwi HvdaAyAGS acicp DCD_CAVPO : 269- 277: eemwl HidaAyAGS aficp DCD_HUMAN : 269- 277: ediwl HvdaAyAGS aficp DCD_PIG : 269- 277: ediwl HvdaAyAGS aficp DCD_RAT : 269- 277: egvwl HidaAyAGS aficp DCEA_ECOLI : 241- 248: ididm Hid-AaSGG flapf DCEB_ECOLI : 241- 248: ididm Hid-AaSGG flapf DCE_DROME : 287- 295: yncwm HidaAwGGG llmsr DCE_FELCA : 371- 379: ynlwl HvdaAwGGG llmsr DCE_PETHY : 242- 249: wdtpi Hvd-AaSGG fiapf DCE_RAT : 370- 378: ynlwl HvdaAwGGG llmsr DCHS_DROME : 270- 278: hhlwl HvdaAyAGS aficp DCHS_ENTAE : 338- 345: wvwkk Hcl-AtSGN vahli DCHS_HUMAN : 271- 279: eglwl HidaAyAGT aflcp DCHS_KLEPL : 338- 345: avwkk Hcl-AtSGD iahli DCHS_MORMO : 338- 345: rvwre Hcl-AtSGD vahli DCHS_MOUSE : 278- 286: eglwl HvdaAyAGT aflcp DCHS_RAT : 274- 282: eglwl HvdaAyAGT aflrp TYD1_PETCR : 260- 268: yklwv HvdaAyAGS acicp TYD2_PETCR : 283- 291: ydlwv HvdaAyAGS acicp TYD3_PETCR : 285- 293: ydlwv HvdaAyAGS acicp TYD4_PETCR : 284- 292: ydlwv HvdaAyAGS acicp G 7: 14.6881 26( 26) H-x(3,4)-A-x-[AGI]-G Occurences: 26(26) DCD1_DROME : 301- 308: hnlwi Hvda-AyAG safic DCD2_DROME : 295- 302: hnlwi Hvda-AyAG safic DCD_BOVIN : 269- 276: eglwl Hvda-AyAG safic DCD_CAEEL : 334- 341: hgtwl Hvda-AyAG talic DCD_CATRO : 285- 292: fgiwi Hvda-AyAG sacic DCD_CAVPO : 269- 276: eemwl Hida-AyAG safic DCD_HUMAN : 269- 276: ediwl Hvda-AyAG safic DCD_PIG : 269- 276: ediwl Hvda-AyAG safic DCD_RAT : 269- 276: egvwl Hida-AyAG safic DCEA_ECOLI : 241- 248: ididm Hida-AsGG flapf DCEB_ECOLI : 241- 248: ididm Hida-AsGG flapf DCE_DROME : 287- 294: yncwm Hida-AwGG gllms DCE_FELCA : 371- 378: ynlwl Hvda-AwGG gllms DCE_PETHY : 242- 249: wdtpi Hvda-AsGG fiapf DCE_RAT : 370- 377: ynlwl Hvda-AwGG gllms DCHS_DROME : 270- 277: hhlwl Hvda-AyAG safic DCHS_ENTAE : 160- 168: tsger HpiifAnIG ttvrg DCHS_HUMAN : 271- 278: eglwl Hida-AyAG taflc DCHS_KLEPL : 160- 168: adnek HpiifAnIG ttvrg DCHS_MORMO : 160- 168: ddkea HpiifAnIG ttvrg DCHS_MOUSE : 278- 285: eglwl Hvda-AyAG taflc DCHS_RAT : 274- 281: eglwl Hvda-AyAG taflr TYD1_PETCR : 260- 267: yklwv Hvda-AyAG sacic TYD2_PETCR : 283- 290: ydlwv Hvda-AyAG sacic TYD3_PETCR : 285- 292: ydlwv Hvda-AyAG sacic TYD4_PETCR : 284- 291: ydlwv Hvda-AyAG sacic H 8: 14.6848 28( 26) A-A-x(1,2)-G-x-[AIL] Occurences: 28(26) DCD1_DROME : 304- 310: wihvd AAyaGsA ficpe DCD2_DROME : 298- 304: wihvd AAyaGsA ficpe DCD_BOVIN : 272- 278: wlhvd AAyaGsA ficpe DCD_CAEEL : 337- 343: wlhvd AAyaGtA licpe DCD_CAEEL : 599- 604: kspqv AAk-GeL psaap DCD_CATRO : 288- 294: wihvd AAyaGsA cicpe DCD_CAVPO : 272- 278: wlhid AAyaGsA ficpe DCD_HUMAN : 272- 278: wlhvd AAyaGsA ficpe DCD_PIG : 272- 278: wlhvd AAyaGsA ficpe DCD_PIG : 476- 482: aaell AAeeGkA eik DCD_RAT : 272- 278: wlhid AAyaGsA ficpe DCEA_ECOLI : 244- 250: dmhid AAsgGfL apfva DCEB_ECOLI : 244- 250: dmhid AAsgGfL apfva DCE_DROME : 290- 296: wmhid AAwgGgL lmsrt DCE_FELCA : 374- 380: wlhvd AAwgGgL lmsrk DCE_PETHY : 245- 251: pihvd AAsgGfI apfiy DCE_RAT : 373- 379: wlhvd AAwgGgL lmsrk DCHS_DROME : 273- 279: wlhvd AAyaGsA ficpe DCHS_ENTAE : 201- 207: ylhad AAlsGmI lpfve DCHS_HUMAN : 274- 280: wlhid AAyaGtA flcpe DCHS_KLEPL : 201- 207: ylhad AAlsGmI lpfvd DCHS_MORMO : 201- 207: ylhad AAlsGmI lpfvd DCHS_MOUSE : 281- 287: wlhvd AAyaGtA flcpe DCHS_RAT : 277- 283: wlhvd AAyaGtA flrpe TYD1_PETCR : 263- 269: wvhvd AAyaGsA cicpe TYD2_PETCR : 286- 292: wvhvd AAyaGsA cicpe TYD3_PETCR : 288- 294: wvhvd AAyaGsA cicpe TYD4_PETCR : 287- 293: wvhvd AAyaGsA cicpe I 9: 14.1848 33( 26) A-A-x(0,2)-G-x-[AIL] Occurences: 33(26) DCD1_DROME : 304- 310: wihvd AAyaGsA ficpe DCD2_DROME : 298- 304: wihvd AAyaGsA ficpe DCD_BOVIN : 230- 234: lerdk AA--GlI pscfv DCD_BOVIN : 272- 278: wlhvd AAyaGsA ficpe DCD_CAEEL : 337- 343: wlhvd AAyaGtA licpe DCD_CAEEL : 599- 604: kspqv AAk-GeL psaap DCD_CATRO : 288- 294: wihvd AAyaGsA cicpe DCD_CAVPO : 231- 235: lerdk AA--GlI pffvv DCD_CAVPO : 272- 278: wlhid AAyaGsA ficpe DCD_HUMAN : 231- 235: lerdk AA--GlI pffmv DCD_HUMAN : 272- 278: wlhvd AAyaGsA ficpe DCD_PIG : 231- 235: lerdk AA--GlI pffvv DCD_PIG : 272- 278: wlhvd AAyaGsA ficpe DCD_PIG : 476- 482: aaell AAeeGkA eik DCD_RAT : 231- 235: lerdk AA--GlI pffvv DCD_RAT : 272- 278: wlhid AAyaGsA ficpe DCEA_ECOLI : 244- 250: dmhid AAsgGfL apfva DCEB_ECOLI : 244- 250: dmhid AAsgGfL apfva DCE_DROME : 290- 296: wmhid AAwgGgL lmsrt DCE_FELCA : 374- 380: wlhvd AAwgGgL lmsrk DCE_PETHY : 245- 251: pihvd AAsgGfI apfiy DCE_RAT : 373- 379: wlhvd AAwgGgL lmsrk DCHS_DROME : 273- 279: wlhvd AAyaGsA ficpe DCHS_ENTAE : 201- 207: ylhad AAlsGmI lpfve DCHS_HUMAN : 274- 280: wlhid AAyaGtA flcpe DCHS_KLEPL : 201- 207: ylhad AAlsGmI lpfvd DCHS_MORMO : 201- 207: ylhad AAlsGmI lpfvd DCHS_MOUSE : 281- 287: wlhvd AAyaGtA flcpe DCHS_RAT : 277- 283: wlhvd AAyaGtA flrpe TYD1_PETCR : 263- 269: wvhvd AAyaGsA cicpe TYD2_PETCR : 286- 292: wvhvd AAyaGsA cicpe TYD3_PETCR : 288- 294: wvhvd AAyaGsA cicpe TYD4_PETCR : 287- 293: wvhvd AAyaGsA cicpe J 10: 13.7514 37( 26) A-x(0,2)-A-x(2)-G-x-[AGIL] Occurences: 37(26) DCD1_DROME : 304- 310: wihvd A--AyaGsA ficpe DCD2_DROME : 298- 304: wihvd A--AyaGsA ficpe DCD_BOVIN : 134- 142: peafl AgeAgeGgG viqgt DCD_BOVIN : 272- 278: wlhvd A--AyaGsA ficpe DCD_CAEEL : 337- 343: wlhvd A--AyaGtA licpe DCD_CATRO : 288- 294: wihvd A--AyaGsA cicpe DCD_CAVPO : 134- 142: pdafl AgnAgmGgG viqgs DCD_CAVPO : 272- 278: wlhid A--AyaGsA ficpe DCD_HUMAN : 272- 278: wlhvd A--AyaGsA ficpe DCD_PIG : 134- 142: peafl AgeAgeGgG viqgs DCD_PIG : 272- 278: wlhvd A--AyaGsA ficpe DCD_PIG : 476- 482: aaell A--AeeGkA eik DCD_RAT : 134- 142: peafl AgrAgeGgG viqgs DCD_RAT : 272- 278: wlhid A--AyaGsA ficpe DCEA_ECOLI : 244- 250: dmhid A--AsgGfL apfva DCEB_ECOLI : 244- 250: dmhid A--AsgGfL apfva DCE_DROME : 214- 220: siksc A--AvcGlG tdhci DCE_DROME : 290- 296: wmhid A--AwgGgL lmsrt DCE_FELCA : 297- 304: ysikk Ag-AalGfG tdnvi DCE_FELCA : 374- 380: wlhvd A--AwgGgL lmsrk DCE_PETHY : 245- 251: pihvd A--AsgGfI apfiy DCE_RAT : 296- 303: ysikk Ag-AalGfG tdnvi DCE_RAT : 373- 379: wlhvd A--AwgGgL lmsrk DCHS_DROME : 273- 279: wlhvd A--AyaGsA ficpe DCHS_ENTAE : 199- 207: dyylh AdaAlsGmI lpfve DCHS_ENTAE : 201- 207: ylhad A--AlsGmI lpfve DCHS_HUMAN : 274- 280: wlhid A--AyaGtA flcpe DCHS_KLEPL : 199- 207: dyylh AdaAlsGmI lpfvd DCHS_KLEPL : 201- 207: ylhad A--AlsGmI lpfvd DCHS_MORMO : 199- 207: dyylh AdaAlsGmI lpfvd DCHS_MORMO : 201- 207: ylhad A--AlsGmI lpfvd DCHS_MOUSE : 281- 287: wlhvd A--AyaGtA flcpe DCHS_RAT : 277- 283: wlhvd A--AyaGtA flrpe TYD1_PETCR : 263- 269: wvhvd A--AyaGsA cicpe TYD2_PETCR : 286- 292: wvhvd A--AyaGsA cicpe TYD3_PETCR : 288- 294: wvhvd A--AyaGsA cicpe TYD4_PETCR : 287- 293: wvhvd A--AyaGsA cicpe K 11: 13.6594 26( 26) W-x(5)-A-x(1,2)-G-x-[AGILPV] Occurences: 26(26) DCD1_DROME : 299- 310: nkhnl WihvdaAyaGsA ficpe DCD2_DROME : 293- 304: nkhnl WihvdaAyaGsA ficpe DCD_BOVIN : 267- 278: hkegl WlhvdaAyaGsA ficpe DCD_CAEEL : 332- 343: rehgt WlhvdaAyaGtA licpe DCD_CATRO : 283- 294: nefgi WihvdaAyaGsA cicpe DCD_CAVPO : 267- 278: nqeem WlhidaAyaGsA ficpe DCD_HUMAN : 267- 278: nkedi WlhvdaAyaGsA ficpe DCD_PIG : 267- 278: heedi WlhvdaAyaGsA ficpe DCD_RAT : 267- 278: nqegv WlhidaAyaGsA ficpe DCEA_ECOLI : 141- 151: amkwr WrkrmeAa-GkP tdkpn DCEB_ECOLI : 141- 151: amkwr WrkrmeAa-GkP tdkpn DCE_DROME : 285- 295: qkync WmhidaAw-GgG llmsr DCE_DROME : 285- 296: qkync WmhidaAwgGgL lmsrt DCE_FELCA : 369- 379: ekynl WlhvdaAw-GgG llmsr DCE_FELCA : 369- 380: ekynl WlhvdaAwgGgL lmsrk DCE_PETHY : 141- 151: afkrk WqnkmkAq-GkP cdkpn DCE_RAT : 368- 378: ekynl WlhvdaAw-GgG llmsr DCE_RAT : 368- 379: ekynl WlhvdaAwgGgL lmsrk DCHS_DROME : 268- 279: aehhl WlhvdaAyaGsA ficpe DCHS_ENTAE : 335- 346: psewv WkkhclAtsGnV ahlit DCHS_HUMAN : 269- 280: aregl WlhidaAyaGtA flcpe DCHS_KLEPL : 335- 346: pseav WkkhclAtsGdI ahlia DCHS_MORMO : 335- 346: pserv WrehclAtsGdV ahlit DCHS_MOUSE : 276- 287: asegl WlhvdaAyaGtA flcpe DCHS_RAT : 272- 283: aregl WlhvdaAyaGtA flrpe TYD1_PETCR : 258- 269: kkykl WvhvdaAyaGsA cicpe TYD2_PETCR : 281- 292: kkydl WvhvdaAyaGsA cicpe TYD3_PETCR : 283- 294: kkydl WvhvdaAyaGsA cicpe TYD4_PETCR : 282- 293: kkydl WvhvdaAyaGsA cicpe L 12: 12.5102 30( 26) H-x-D-A Occurences: 30(26) DCD1_DROME : 301- 304: hnlwi HvDA ayags DCD2_DROME : 295- 298: hnlwi HvDA ayags DCD_BOVIN : 269- 272: eglwl HvDA ayags DCD_CAEEL : 334- 337: hgtwl HvDA ayagt DCD_CATRO : 285- 288: fgiwi HvDA ayags DCD_CAVPO : 269- 272: eemwl HiDA ayags DCD_HUMAN : 269- 272: ediwl HvDA ayags DCD_PIG : 269- 272: ediwl HvDA ayags DCD_RAT : 269- 272: egvwl HiDA ayags DCEA_ECOLI : 241- 244: ididm HiDA asggf DCEB_ECOLI : 241- 244: ididm HiDA asggf DCE_DROME : 287- 290: yncwm HiDA awggg DCE_FELCA : 371- 374: ynlwl HvDA awggg DCE_PETHY : 242- 245: wdtpi HvDA asggf DCE_RAT : 370- 373: ynlwl HvDA awggg DCHS_DROME : 270- 273: hhlwl HvDA ayags DCHS_DROME : 309- 312: kwlmv HfDA talwv DCHS_ENTAE : 198- 201: edyyl HaDA alsgm DCHS_ENTAE : 286- 289: aavrs HtDA ewhrr DCHS_HUMAN : 271- 274: eglwl HiDA ayagt DCHS_KLEPL : 198- 201: kdyyl HaDA alsgm DCHS_MORMO : 198- 201: edyyl HaDA alsgm DCHS_MOUSE : 278- 281: eglwl HvDA ayagt DCHS_RAT : 274- 277: eglwl HvDA ayagt TYD1_PETCR : 260- 263: yklwv HvDA ayags TYD2_PETCR : 283- 286: ydlwv HvDA ayags TYD3_PETCR : 285- 288: ydlwv HvDA ayags TYD3_PETCR : 497- 500: kvlqd HaDA lldda TYD4_PETCR : 284- 287: ydlwv HvDA ayags TYD4_PETCR : 496- 499: kvlqd HaDA lldea M 13: 12.0102 46( 26) S-x(3)-A-x(1,2)-L Occurences: 46(26) DCD1_DROME : 184- 190: gtase StlvAl-L gakak DCD1_DROME : 227- 233: dqahs SverAg-L lggvk DCD1_DROME : 227- 234: dqahs SverAglL ggvkl DCD2_DROME : 178- 184: gtase StlvAl-L gakak DCD2_DROME : 221- 227: dqahs SverAg-L lggvk DCD2_DROME : 221- 228: dqahs SverAglL ggvkl DCD_BOVIN : 84- 90: yfpta SsypAm-L admlc DCD_BOVIN : 194- 200: dqahs SvekAg-L iggvr DCD_CAEEL : 240- 246: krlrs SdilAr-L vayts DCD_CATRO : 128- 135: gftwv SspaAteL emivm DCD_CAVPO : 147- 153: gviqg SaseAt-L valla DCD_CAVPO : 194- 200: dqahs SverAg-L iggvr DCD_HUMAN : 84- 90: yfpta SsypAm-L admlc DCD_HUMAN : 147- 153: gviqg SaseAt-L valla DCD_HUMAN : 194- 200: dqahs SverAg-L iggvk DCD_PIG : 84- 90: yfpta SsypAm-L admlc DCD_PIG : 147- 153: gviqg SaseAt-L valla DCD_PIG : 194- 200: dqahs SverAg-L iggvk DCD_RAT : 84- 90: yfpta SsypAm-L admlc DCD_RAT : 147- 153: gviqg SaseAt-L valla DCD_RAT : 194- 200: dqahs SverAg-L iggvk DCD_RAT : 216- 222: sdgny SmraAa-L reale DCEA_ECOLI : 346- 353: kvqna SyqvAayL adeia DCEB_ECOLI : 346- 353: kvqna SyqvAayL adeia DCE_DROME : 170- 176: pggsi SnlyAf-L aarhk DCE_FELCA : 96- 103: tetdf SnlfArdL lpakn DCE_PETHY : 426- 433: iredf SrtlAerL vrdie DCE_RAT : 95- 102: tetdf SnlfAqdL lpakn DCHS_DROME : 195- 201: dqahs SvekAa-L iglvr DCHS_DROME : 628- 635: tsnvp SpehAhsL stpsr DCHS_DROME : 681- 688: sqshl SmplAmpL pnrnv DCHS_ENTAE : 343- 349: hclat SgnvAh-L ittah DCHS_HUMAN : 153- 159: qtvse StliAl-L aarkn DCHS_HUMAN : 179- 185: pdade SclnAr-L vayas DCHS_HUMAN : 196- 202: dqahs SvekAg-L islvk DCHS_KLEPL : 343- 349: hclat SgdiAh-L iatah DCHS_MORMO : 343- 349: hclat SgdvAh-L ittah DCHS_MOUSE : 160- 166: stvse StliAl-L aarkn DCHS_MOUSE : 186- 192: pdane SslnAr-L vayts DCHS_MOUSE : 203- 209: dqahs SvekAg-L islvk DCHS_MOUSE : 646- 653: sfpec SsqcArqL pccpl DCHS_RAT : 156- 162: rtvse StliAl-L aarkn DCHS_RAT : 182- 188: pnade SslnAr-L vayas DCHS_RAT : 199- 205: dqahs SvekAg-L islvk TYD1_PETCR : 79- 86: ayfps SgstAgfL gemls TYD2_PETCR : 102- 109: ayfps SgstAgfL gemls TYD3_PETCR : 104- 111: ayfps SgstAgfL gemls TYD4_PETCR : 103- 110: ayfps SgstAgfL gemls N 14: 12.0102 34( 26) A-x-S-x(4,5)-P Occurences: 34(26) DCD1_DROME : 307- 314: vdaay AgSafic-P eyrhl DCD1_DROME : 326- 333: kgies AdSfnfn-P hkwml DCD2_DROME : 301- 308: vdaay AgSafic-P eyrhl DCD2_DROME : 320- 327: kgies AdSfnfn-P hkwml DCD_BOVIN : 275- 282: vdaay AgSafic-P efrhl DCD_BOVIN : 294- 301: ngvef AdSfnfn-P hkwll DCD_CAEEL : 359- 366: rgidw AdSfctt-P sklii DCD_CATRO : 291- 298: vdaay AgSacic-P efrhy DCD_CAVPO : 275- 282: idaay AgSafic-P efrhl DCD_CAVPO : 294- 301: dgvef AdSfnfn-P hkwll DCD_HUMAN : 275- 282: vdaay AgSafic-P efrhl DCD_HUMAN : 294- 301: ngvef AdSfnfn-P hkwll DCD_PIG : 275- 282: vdaay AgSafic-P efrhl DCD_PIG : 294- 301: ngvef AdSfnfn-P hkwll DCD_RAT : 275- 282: idaay AgSafic-P efryl DCD_RAT : 294- 301: ngvef AdSfnfn-P hkwll DCEA_ECOLI : 244- 252: dmhid AaSggflaP fvapd DCEB_ECOLI : 244- 252: dmhid AaSggflaP fvapd DCE_DROME : 313- 320: tgver AdSvtwn-P hklmg DCE_FELCA : 396- 403: sgier AnSvtwn-P hkmmg DCE_PETHY : 245- 253: pihvd AaSggfiaP fiype DCE_RAT : 395- 402: sgier AnSvtwn-P hkmmg DCHS_DROME : 276- 283: vdaay AgSafic-P efrtw DCHS_DROME : 295- 302: rgier AdSiafn-P skwlm DCHS_ENTAE : 202- 209: lhada AlSgmil-P fvedp DCHS_HUMAN : 296- 303: kgiey AdSftfn-P skwmm DCHS_KLEPL : 202- 209: lhada AlSgmil-P fvdnp DCHS_MORMO : 202- 209: lhada AlSgmil-P fvdda DCHS_MOUSE : 303- 310: egiey AdSftfn-P skwmm DCHS_RAT : 299- 306: kgiey AdSftfn-P skwmm TYD1_PETCR : 266- 273: vdaay AgSacic-P efrqy TYD2_PETCR : 289- 296: vdaay AgSacic-P efrqy TYD3_PETCR : 291- 298: vdaay AgSacic-P efrqy TYD4_PETCR : 290- 297: vdaay AgSacic-P efrqy O 15: 11.5102 42( 26) L-x(2,3)-D-x(3,4)-L Occurences: 42(26) DCD1_DROME : 421- 430: kqfgd LcvaDsrfeL aaein DCD2_DROME : 415- 424: kqfgd LcvaDsrfeL aaein DCD_BOVIN : 225- 233: srcrr Ler-DkaagL ipscf DCD_CAEEL : 237- 246: qrdkr LrssDilarL vayts DCD_CAEEL : 274- 282: vkmrv Lpt-DqnfiL rgdtl DCD_CAEEL : 379- 387: cdvcc LwvrDrhk-L qhasl DCD_CATRO : 186- 194: ralek Lgp-DsigkL vcygs DCD_CATRO : 322- 330: phkwl LaylDctc-L wvkqp DCD_CATRO : 429- 436: lvcfr Lkp-Dvss-L hveev DCD_CAVPO : 226- 234: alrea Ler-DkaagL ipffv DCD_HUMAN : 226- 234: alqea Ler-DkaagL ipffm DCD_PIG : 226- 234: alqea Ler-DkaagL ipffv DCD_RAT : 226- 234: alrea Ler-DkaagL ipffv DCEA_ECOLI : 5- 13: mdqk Llt-DfrseL ldsrf DCEA_ECOLI : 436- 445: mdfae LlleDykasL kylsd DCEA_ECOLI : 437- 445: dfael Lle-DykasL kylsd DCEB_ECOLI : 436- 445: mdfae LlleDykasL kylsd DCEB_ECOLI : 437- 445: dfael Lle-DykasL kylsd DCE_DROME : 73- 82: krlld LdvpDralpL qqlie DCE_DROME : 85- 93: lplqq Lie-DcattL kyqvk DCE_FELCA : 156- 165: megfn LelsDhpesL eqilv DCE_PETHY : 50- 58: iinde Lml-DgnprL nlasf DCE_PETHY : 259- 267: fiype Lew-DfrlpL vksin DCE_PETHY : 433- 441: tlaer Lvr-DiekvL heldt DCE_RAT : 155- 164: megfn LelsDhpesL eqilv DCHS_DROME : 390- 399: qkfea LvlaDhrfeL pakrh DCHS_ENTAE : 2- 10: s LsiaDqnk-L dafws DCHS_ENTAE : 364- 372: srida Lid-DviadL aqraa DCHS_HUMAN : 211- 219: vkmkf LpvdDnfs-L rgeal DCHS_HUMAN : 211- 219: vkmkf Lpv-DdnfsL rgeal DCHS_HUMAN : 466- 473: lrdwn Lir-Daat-L ilsqh DCHS_KLEPL : 2- 10: t LsisDqnk-L dsfws DCHS_KLEPL : 364- 372: skida Lid-DviadL kkqaa DCHS_MORMO : 2- 10: t LsinDqnk-L dafwa DCHS_MOUSE : 218- 226: vkirf LpvdDnfs-L rgeal DCHS_MOUSE : 218- 226: vkirf Lpv-DdnfsL rgeal DCHS_RAT : 214- 222: vkikf LpvdDnfs-L rgeal DCHS_RAT : 214- 222: vkikf Lpv-DdnfsL rgeal TYD1_PETCR : 297- 305: ahkwf LttlDccc-L wvrdp TYD1_PETCR : 305- 313: ldccc LwvrDpsa-L iksls TYD2_PETCR : 320- 328: ahkwf LttlDccc-L wvrnp TYD3_PETCR : 322- 330: ahkwf LttlDccc-L wvrdp TYD3_PETCR : 330- 338: ldccc LwvrDpsa-L iksls TYD4_PETCR : 321- 329: ahkwf LttlDccc-L wvrdp TYD4_PETCR : 329- 337: ldccc LwvrDpsa-L iksls P 16: 11.5102 43( 26) L-x(3,4)-I-x(2,3)-L Occurences: 43(26) DCD1_DROME : 430- 438: dsrfe Laae-InmgL vcfrl DCD2_DROME : 424- 432: dsrfe Laae-InmgL vcfrl DCD_BOVIN : 174- 183: arape LtqaaImekL vayas DCD_CAEEL : 237- 246: qrdkr LrssdIlarL vayts DCD_CAEEL : 344- 352: yagta LicpeIrg-L mrgid DCD_CATRO : 186- 194: ralek LgpdsIgk-L vcygs DCD_CAVPO : 174- 183: aaspe LtqaaImekL vayas DCD_HUMAN : 174- 183: aaspe LtqaaImekL vayss DCD_PIG : 462- 470: sghvr LawehIrg-L aaell DCD_RAT : 462- 470: sahvq LawehIrd-L assvl DCEA_ECOLI : 353- 360: qvaay Lade-Iak-L gpyef DCEB_ECOLI : 353- 360: qvaay Lade-Iak-L gpyef DCE_DROME : 37- 44: etref Llkv-Idv-L ldfvk DCE_DROME : 37- 45: etref Llkv-IdvlL dfvka DCE_FELCA : 43- 51: gctrk Lglk-IcgfL qrtns DCE_FELCA : 583- 590: sdidf Liee-Ier-L gqdl DCE_PETHY : 300- 307: dlpde Lifh-Iny-L gadqp DCE_PETHY : 433- 441: tlaer Lvrd-IekvL heldt DCE_RAT : 42- 50: gctrk Lglk-IcgfL qrtns DCE_RAT : 582- 589: sdidf Liee-Ier-L gqdl DCHS_DROME : 94- 101: llgdm Lada-Inc-L gftwa DCHS_DROME : 365- 373: kvwfv LrsygIkg-L qrhir DCHS_ENTAE : 356- 364: ttahh LdssrIda-L iddvi DCHS_ENTAE : 364- 372: srida LiddvIad-L aqraa DCHS_HUMAN : 95- 102: llgdm Lada-Inc-L gftwa DCHS_HUMAN : 435- 444: agrlf LipatIqdkL iirft DCHS_KLEPL : 356- 364: atahh LdsskIda-L iddvi DCHS_KLEPL : 364- 372: skida LiddvIad-L kkqaa DCHS_MORMO : 356- 364: ttahh LdtvqIdk-L iddvi DCHS_MOUSE : 102- 109: llgdm Lada-Inc-L gftwa DCHS_MOUSE : 122- 130: pacte Lemn-ImdwL akmlg DCHS_MOUSE : 442- 451: agqlf LipatIqdkL iirft DCHS_RAT : 98- 105: llgdm Lada-Inc-L gftwa DCHS_RAT : 118- 126: pacte Lemn-ImdwL akmlg DCHS_RAT : 438- 447: tgqvf LipatIqdkL iirft TYD1_PETCR : 213- 221: lcpkr Lesa-IlydL qngli TYD1_PETCR : 221- 230: ailyd LqnglIplyL catvg TYD2_PETCR : 236- 244: lcpkr Lesa-IlhdL qngli TYD2_PETCR : 244- 253: ailhd LqnglIplyL catvg TYD3_PETCR : 238- 246: lcpkr Lesa-IlydL qngli TYD3_PETCR : 246- 255: ailyd LqnglIplyL catvg TYD3_PETCR : 507- 515: lddaf Lpkk-IvniL s TYD4_PETCR : 237- 245: lcpkr Lesa-IlydL qngli TYD4_PETCR : 245- 254: ailyd LqnglIplyL catvg Q 17: 11.5102 48( 26) S-x(3)-A-x(0,2)-L Occurences: 48(26) DCD1_DROME : 184- 189: gtase StlvA--L lgaka DCD1_DROME : 184- 190: gtase StlvAl-L gakak DCD1_DROME : 227- 233: dqahs SverAg-L lggvk DCD1_DROME : 227- 234: dqahs SverAglL ggvkl DCD2_DROME : 178- 183: gtase StlvA--L lgaka DCD2_DROME : 178- 184: gtase StlvAl-L gakak DCD2_DROME : 221- 227: dqahs SverAg-L lggvk DCD2_DROME : 221- 228: dqahs SverAglL ggvkl DCD_BOVIN : 84- 90: yfpta SsypAm-L admlc DCD_BOVIN : 194- 200: dqahs SvekAg-L iggvr DCD_CAEEL : 240- 246: krlrs SdilAr-L vayts DCD_CATRO : 128- 135: gftwv SspaAteL emivm DCD_CAVPO : 147- 153: gviqg SaseAt-L valla DCD_CAVPO : 194- 200: dqahs SverAg-L iggvr DCD_HUMAN : 84- 90: yfpta SsypAm-L admlc DCD_HUMAN : 147- 153: gviqg SaseAt-L valla DCD_HUMAN : 194- 200: dqahs SverAg-L iggvk DCD_PIG : 84- 90: yfpta SsypAm-L admlc DCD_PIG : 147- 153: gviqg SaseAt-L valla DCD_PIG : 194- 200: dqahs SverAg-L iggvk DCD_RAT : 84- 90: yfpta SsypAm-L admlc DCD_RAT : 147- 153: gviqg SaseAt-L valla DCD_RAT : 194- 200: dqahs SverAg-L iggvk DCD_RAT : 216- 222: sdgny SmraAa-L reale DCEA_ECOLI : 346- 353: kvqna SyqvAayL adeia DCEB_ECOLI : 346- 353: kvqna SyqvAayL adeia DCE_DROME : 170- 176: pggsi SnlyAf-L aarhk DCE_FELCA : 96- 103: tetdf SnlfArdL lpakn DCE_PETHY : 426- 433: iredf SrtlAerL vrdie DCE_RAT : 95- 102: tetdf SnlfAqdL lpakn DCHS_DROME : 195- 201: dqahs SvekAa-L iglvr DCHS_DROME : 628- 635: tsnvp SpehAhsL stpsr DCHS_DROME : 681- 688: sqshl SmplAmpL pnrnv DCHS_ENTAE : 343- 349: hclat SgnvAh-L ittah DCHS_ENTAE : 359- 364: hhlds SridA--L iddvi DCHS_HUMAN : 153- 158: qtvse StliA--L laark DCHS_HUMAN : 153- 159: qtvse StliAl-L aarkn DCHS_HUMAN : 179- 185: pdade SclnAr-L vayas DCHS_HUMAN : 196- 202: dqahs SvekAg-L islvk DCHS_KLEPL : 343- 349: hclat SgdiAh-L iatah DCHS_KLEPL : 359- 364: hhlds SkidA--L iddvi DCHS_MORMO : 343- 349: hclat SgdvAh-L ittah DCHS_MOUSE : 160- 165: stvse StliA--L laark DCHS_MOUSE : 160- 166: stvse StliAl-L aarkn DCHS_MOUSE : 186- 192: pdane SslnAr-L vayts DCHS_MOUSE : 203- 209: dqahs SvekAg-L islvk DCHS_MOUSE : 646- 653: sfpec SsqcArqL pccpl DCHS_RAT : 156- 161: rtvse StliA--L laark DCHS_RAT : 156- 162: rtvse StliAl-L aarkn DCHS_RAT : 182- 188: pnade SslnAr-L vayas DCHS_RAT : 199- 205: dqahs SvekAg-L islvk TYD1_PETCR : 79- 86: ayfps SgstAgfL gemls TYD2_PETCR : 102- 109: ayfps SgstAgfL gemls TYD3_PETCR : 104- 111: ayfps SgstAgfL gemls TYD4_PETCR : 103- 110: ayfps SgstAgfL gemls R 18: 11.5102 36( 26) A-x(3,4)-I-x(1,2)-E Occurences: 36(26) DCD1_DROME : 307- 315: vdaay AgsafIcpE yrhlm DCD2_DROME : 301- 309: vdaay AgsafIcpE yrhlm DCD_BOVIN : 275- 283: vdaay AgsafIcpE frhll DCD_BOVIN : 463- 469: ahvql Aweh-Iq-E maatv DCD_CAEEL : 340- 348: vdaay AgtalIcpE irglm DCD_CAEEL : 515- 522: edlds Aykl-IcnE ydilk DCD_CATRO : 291- 299: vdaay AgsacIcpE frhyl DCD_CAVPO : 275- 283: idaay AgsafIcpE frhll DCD_HUMAN : 275- 283: vdaay AgsafIcpE frhll DCD_HUMAN : 463- 469: ahvqr Aweh-Ik-E laadv DCD_PIG : 275- 283: vdaay AgsafIcpE frhll DCD_RAT : 275- 283: idaay AgsafIcpE fryll DCEA_ECOLI : 22- 28: rfgak Aist-Ia-E skrfp DCEA_ECOLI : 42- 49: mrddv Afqi-IndE lyldg DCEB_ECOLI : 42- 49: mrddv Afqi-IndE lyldg DCE_DROME : 136- 143: ftyei Apvf-IlmE nvvlt DCE_FELCA : 352- 358: ttvyg Afdp-Iq-E iadic DCE_PETHY : 41- 49: sipke AayqiIndE lmldg DCE_PETHY : 42- 49: ipkea Ayqi-IndE lmldg DCE_RAT : 351- 357: ttvyg Afdp-Iq-E iadic DCHS_DROME : 276- 284: vdaay AgsafIcpE frtwl DCHS_ENTAE : 174- 180: ttvrg Avdn-Ia-E iqkri DCHS_ENTAE : 186- 193: iqkri Aalg-IprE dyylh DCHS_ENTAE : 248- 256: vvakk AnvdrIsvE idyis DCHS_HUMAN : 161- 168: ialla ArknkIl-E mktse DCHS_HUMAN : 223- 230: slrge AlqkaIe-E dkqrg DCHS_KLEPL : 74- 82: vmeyf AqlfkIpfE eswgy DCHS_MORMO : 74- 82: vmeyf AdlfkIpfE qswgy DCHS_MORMO : 174- 180: ttvrg Aidd-Ia-E iqkrl DCHS_MOUSE : 230- 237: slrge AlqkaIe-E dkqqg DCHS_RAT : 164- 171: ialla ArknkIl-E mkahe DCHS_RAT : 226- 233: slrge AlqkaIe-E dkqqg TYD1_PETCR : 266- 274: vdaay AgsacIcpE frqyl TYD2_PETCR : 289- 297: vdaay AgsacIcpE frqyl TYD3_PETCR : 291- 299: vdaay AgsacIcpE frqyl TYD4_PETCR : 290- 298: vdaay AgsacIcpE frqyl S 19: 11.5102 49( 26) A-x(0,1)-A-x(2,3)-G Occurences: 49(26) DCD1_DROME : 130- 135: dmlsg AiAci-G ftwia DCD1_DROME : 304- 308: wihvd A-Aya-G safic DCD2_DROME : 124- 129: dmlsg AiAci-G ftwia DCD2_DROME : 298- 302: wihvd A-Aya-G safic DCD_BOVIN : 272- 276: wlhvd A-Aya-G safic DCD_CAEEL : 337- 341: wlhvd A-Aya-G talic DCD_CATRO : 108- 112: atvss A-Afl-G emlst DCD_CATRO : 288- 292: wihvd A-Aya-G sacic DCD_CAVPO : 272- 276: wlhid A-Aya-G safic DCD_HUMAN : 272- 276: wlhvd A-Aya-G safic DCD_PIG : 169- 173: vrrlq A-Asp-G ltqga DCD_PIG : 272- 276: wlhvd A-Aya-G safic DCD_PIG : 476- 480: aaell A-Aee-G kaeik DCD_RAT : 272- 276: wlhid A-Aya-G safic DCEA_ECOLI : 110- 116: adlwh ApApknG qavgt DCEA_ECOLI : 244- 248: dmhid A-Asg-G flapf DCEB_ECOLI : 110- 116: adlwh ApApknG qavgt DCEB_ECOLI : 244- 248: dmhid A-Asg-G flapf DCE_DROME : 214- 218: siksc A-Avc-G lgtdh DCE_DROME : 290- 294: wmhid A-Awg-G gllms DCE_DROME : 290- 295: wmhid A-AwggG llmsr DCE_FELCA : 297- 302: ysikk AgAal-G fgtdn DCE_FELCA : 299- 304: ikkag A-AlgfG tdnvi DCE_FELCA : 374- 378: wlhvd A-Awg-G gllms DCE_FELCA : 374- 379: wlhvd A-AwggG llmsr DCE_PETHY : 207- 211: nticv A-Ail-G stlng DCE_PETHY : 245- 249: pihvd A-Asg-G fiapf DCE_PETHY : 462- 466: vaeeq A-Aan-G sevhk DCE_RAT : 296- 301: ysikk AgAal-G fgtdn DCE_RAT : 298- 303: ikkag A-AlgfG tdnvi DCE_RAT : 373- 377: wlhvd A-Awg-G gllms DCE_RAT : 373- 378: wlhvd A-AwggG llmsr DCHS_DROME : 199- 203: ssvek A-Ali-G lvrmr DCHS_DROME : 273- 277: wlhvd A-Aya-G safic DCHS_ENTAE : 199- 205: dyylh AdAalsG milpf DCHS_ENTAE : 201- 205: ylhad A-Als-G milpf DCHS_HUMAN : 274- 278: wlhid A-Aya-G taflc DCHS_HUMAN : 497- 503: sqirg ArAwacG tslqs DCHS_KLEPL : 199- 205: dyylh AdAalsG milpf DCHS_KLEPL : 201- 205: ylhad A-Als-G milpf DCHS_MORMO : 199- 205: dyylh AdAalsG milpf DCHS_MORMO : 201- 205: ylhad A-Als-G milpf DCHS_MOUSE : 281- 285: wlhvd A-Aya-G taflc DCHS_RAT : 277- 281: wlhvd A-Aya-G taflr TYD1_PETCR : 184- 189: salqk A-AkiaG idpkn TYD1_PETCR : 263- 267: wvhvd A-Aya-G sacic TYD2_PETCR : 207- 212: salqk A-AkiaG idpkn TYD2_PETCR : 286- 290: wvhvd A-Aya-G sacic TYD3_PETCR : 209- 214: salqk A-AkiaG idpkn TYD3_PETCR : 288- 292: wvhvd A-Aya-G sacic TYD4_PETCR : 208- 213: salqk A-AkiaG idpkn TYD4_PETCR : 287- 291: wvhvd A-Aya-G sacic T 20: 11.5102 44( 26) A-x(0,2)-A-x(2)-G Occurences: 44(26) DCD1_DROME : 130- 135: dmlsg Ai-AciG ftwia DCD1_DROME : 304- 308: wihvd A--AyaG safic DCD2_DROME : 124- 129: dmlsg Ai-AciG ftwia DCD2_DROME : 298- 302: wihvd A--AyaG safic DCD_BOVIN : 134- 140: peafl AgeAgeG ggviq DCD_BOVIN : 272- 276: wlhvd A--AyaG safic DCD_CAEEL : 337- 341: wlhvd A--AyaG talic DCD_CATRO : 108- 112: atvss A--AflG emlst DCD_CATRO : 288- 292: wihvd A--AyaG sacic DCD_CAVPO : 134- 140: pdafl AgnAgmG ggviq DCD_CAVPO : 272- 276: wlhid A--AyaG safic DCD_HUMAN : 272- 276: wlhvd A--AyaG safic DCD_PIG : 134- 140: peafl AgeAgeG ggviq DCD_PIG : 169- 173: vrrlq A--AspG ltqga DCD_PIG : 272- 276: wlhvd A--AyaG safic DCD_PIG : 476- 480: aaell A--AeeG kaeik DCD_RAT : 134- 140: peafl AgrAgeG ggviq DCD_RAT : 272- 276: wlhid A--AyaG safic DCEA_ECOLI : 244- 248: dmhid A--AsgG flapf DCEB_ECOLI : 244- 248: dmhid A--AsgG flapf DCE_DROME : 214- 218: siksc A--AvcG lgtdh DCE_DROME : 290- 294: wmhid A--AwgG gllms DCE_FELCA : 297- 302: ysikk Ag-AalG fgtdn DCE_FELCA : 374- 378: wlhvd A--AwgG gllms DCE_PETHY : 207- 211: nticv A--AilG stlng DCE_PETHY : 245- 249: pihvd A--AsgG fiapf DCE_PETHY : 462- 466: vaeeq A--AanG sevhk DCE_RAT : 296- 301: ysikk Ag-AalG fgtdn DCE_RAT : 373- 377: wlhvd A--AwgG gllms DCHS_DROME : 199- 203: ssvek A--AliG lvrmr DCHS_DROME : 273- 277: wlhvd A--AyaG safic DCHS_ENTAE : 199- 205: dyylh AdaAlsG milpf DCHS_ENTAE : 201- 205: ylhad A--AlsG milpf DCHS_HUMAN : 274- 278: wlhid A--AyaG taflc DCHS_KLEPL : 199- 205: dyylh AdaAlsG milpf DCHS_KLEPL : 201- 205: ylhad A--AlsG milpf DCHS_MORMO : 199- 205: dyylh AdaAlsG milpf DCHS_MORMO : 201- 205: ylhad A--AlsG milpf DCHS_MOUSE : 281- 285: wlhvd A--AyaG taflc DCHS_RAT : 277- 281: wlhvd A--AyaG taflr TYD1_PETCR : 263- 267: wvhvd A--AyaG sacic TYD2_PETCR : 286- 290: wvhvd A--AyaG sacic TYD3_PETCR : 288- 292: wvhvd A--AyaG sacic TYD4_PETCR : 287- 291: wvhvd A--AyaG sacic Number of patterns evaluated by Pratt:4755 Total running time: 15 seconds