------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file DAO PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DAO.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: OXDA_FUSSO 361 OXDA_HUMAN 347 OXDA_MOUSE 345 OXDA_PIG 347 OXDA_RABIT 347 OXDD_BOVIN 338 Pratt run started at Thu Feb 6 19:16:02 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.2005 7( 6) I-x(1,2)-N-x(2)-G-x(5)-L-x(2,4)-D-x(4)-P-x-R-G-Q-x(3)-V 2: 39.7005 9( 6) V-x(0,2)-N-x(2)-G-x(5)-L-x(2,4)-D-x(4)-P-x-R-G-Q-x(3)-V 3: 36.5305 7( 6) V-x(0,1)-H-x(0,1)-Y-G-H-x(3)-G-x(5)-G-x-A-x(5)-L 4: 36.5305 6( 6) N-x(2)-G-x(5)-L-x(2,4)-D-x(4)-P-x-R-G-Q-x(3)-V 5: 36.5305 10( 6) V-x(0,1)-V-x(0,1)-G-A-G-V-x-G-L-x(2)-A 6: 36.5305 6( 6) V-x-G-A-G-V-x-G-L-x(0,1)-S-x(0,1)-A 7: 36.0305 7( 6) V-x(0,2)-H-x(0,1)-Y-G-H-x(3)-G-x(5)-G-x-A-x(5)-L 8: 32.8604 8( 6) V-x(0,1)-G-A-G-V-x-G-L-x(2)-A 9: 32.3604 6( 6) G-A-G-V-x-G-L-x(0,1)-S-x(0,1)-A 10: 32.3604 8( 6) V-x(0,1)-G-A-G-V-x-G-L-x(0,1)-S 11: 31.3604 8( 6) G-x(3,5)-L-x(2,4)-D-x(4)-P-x-R-G-Q-x(3)-V 12: 29.1904 6( 6) Y-G-H-x(3)-G-x(5)-G-x-A-x(5)-L 13: 28.6904 6( 6) G-x-R-P-x-R-x(3,4)-R-x(3)-E-x-L 14: 28.6904 6( 6) R-x(4,5)-G-x-G-V-x-G-L-S 15: 28.1904 7( 6) V-x(0,1)-H-x-Y-G-H-x(0,1)-G-x-G 16: 28.1904 6( 6) G-x(0,1)-R-P-x-R-x(3,4)-R-x(3)-E-x-L 17: 28.1904 6( 6) L-x(2,4)-D-x(4)-P-x-R-G-Q-x(3)-V 18: 28.1904 6( 6) A-G-V-x-G-L-x(0,1)-S-x(0,1)-A 19: 25.0203 6( 6) D-x(4)-P-x-R-G-Q-x(3)-V 20: 24.5203 6( 6) H-x-Y-G-H-x(0,1)-G-x-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 87.8357 7( 6) I-x(1,2)-N-[AC]-[ST]-G-[LV]-x-[AS]-x(2)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] B 2: 87.3357 9( 6) V-x(0,2)-N-[AC]-[ST]-G-[LV]-x-[AS]-x(2)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] C 3: 84.1657 6( 6) N-[AC]-[ST]-G-[LV]-x-[AS]-x(2)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] D 4: 72.2246 7( 6) V-x(0,1)-H-x(0,1)-Y-G-H-[GS]-[GS]-x-G-x-[AQT]-x(2)-[WY]-G-[CT]-A-x-[EN]-[AV]-[ATV]-x-L-[FV]-[DGN]-[EKR]-x-[GLV] E 5: 71.7246 7( 6) V-x(0,2)-H-x(0,1)-Y-G-H-[GS]-[GS]-x-G-x-[AQT]-x(2)-[WY]-G-[CT]-A-x-[EN]-[AV]-[ATV]-x-L-[FV]-[DGN]-[EKR]-x-[GLV] F 6: 66.1394 8( 6) G-x(3,5)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] G 7: 64.8845 6( 6) Y-G-H-[GS]-[GS]-x-G-x-[AQT]-x(2)-[WY]-G-[CT]-A-x-[EN]-[AV]-[ATV]-x-L-[FV]-[DGN]-[EKR]-x-[GLV] H 8: 62.9693 6( 6) L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] I 9: 62.1979 6( 6) G-x-R-P-x-R-x(3,4)-R-[IL]-[EG]-[EKR]-E-x-L-x(2)-[DEG]-[PST]-x(4)-[NV]-x(4)-G-[HW]-G-x(2)-G J 10: 61.6979 6( 6) G-x(0,1)-R-P-x-R-x(3,4)-R-[IL]-[EG]-[EKR]-E-x-L-x(2)-[DEG]-[PST]-x(4)-[NV]-x(4)-G-[HW]-G-x(2)-G K 11: 59.7993 6( 6) D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] L 12: 58.1029 10( 6) V-x(0,1)-V-x(0,1)-G-A-G-V-[IM]-G-L-[ST]-[ST]-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] M 13: 54.9770 6( 6) V-[IV]-G-A-G-V-[IM]-G-L-x(0,1)-S-x(0,1)-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] N 14: 54.4329 8( 6) V-x(0,1)-G-A-G-V-[IM]-G-L-[ST]-[ST]-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] O 15: 51.2565 7( 6) V-x(0,1)-H-x-Y-G-H-x(0,1)-G-x-G-x(2)-[AGI]-x-[HWY]-x-[CG]-[AT]-x(3)-[AV]-x(2)-[FLV]-[DGV]-x(4)-[AEQ] P 16: 47.5865 6( 6) H-x-Y-G-H-x(0,1)-G-x-G-x(2)-[AGI]-x-[HWY]-x-[CG]-[AT]-x(3)-[AV]-x(2)-[FLV]-[DGV]-x(4)-[AEQ] Q 17: 47.5820 6( 6) G-A-G-V-[IM]-G-L-x(0,1)-S-x(0,1)-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] R 18: 45.2193 8( 6) V-x(0,1)-G-A-G-V-[IM]-G-L-x(0,1)-S-[AT]-[AL]-[LV] S 19: 43.4120 6( 6) A-G-V-[IM]-G-L-x(0,1)-S-x(0,1)-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] T 20: 38.4460 6( 6) R-x(4,5)-G-x-G-V-x-G-L-S-[TV]-[AI]-x(2)-[AI] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 87.8357 7( 6) I-x(1,2)-N-[AC]-[ST]-G-[LV]-x-[AS]-x(2)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] Occurences: 7(6) OXDA_FUSSO : 190- 238: gktpn IivNATGLgSykLggveDktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_FUSSO : 191- 238: ktpni Iv-NATGLgSykLggveDktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_HUMAN : 178- 223: egadv Iv-NCTGVwAgaLqr--DplLqPGRGQIMkVDAPwmkhFIlThDpergI ynspy OXDA_MOUSE : 176- 221: rgvdv Ii-NCTGVwAgaLqa--DasLqPGRGQIIqVEAPwikhFIlThDpslgI ynspy OXDA_PIG : 178- 223: ggadv Ii-NCTGVwAgvLqp--DplLqPGRGQIIkVDAPwlknFIiThDlergI ynspy OXDA_RABIT : 178- 223: ggvdv Iv-NCTGVwAsaLqp--DplLqPGRGQIIkVDAPwvkhFIiThDpesgI ykspy OXDD_BOVIN : 178- 224: hpsfd IvvNCSGLgSrqLag--DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs B 2: 87.3357 9( 6) V-x(0,2)-N-[AC]-[ST]-G-[LV]-x-[AS]-x(2)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] Occurences: 9(6) OXDA_FUSSO : 192- 238: tpnii V--NATGLgSykLggveDktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_HUMAN : 177- 223: regad VivNCTGVwAgaLqr--DplLqPGRGQIMkVDAPwmkhFIlThDpergI ynspy OXDA_HUMAN : 179- 223: gadvi V--NCTGVwAgaLqr--DplLqPGRGQIMkVDAPwmkhFIlThDpergI ynspy OXDA_MOUSE : 175- 221: argvd ViiNCTGVwAgaLqa--DasLqPGRGQIIqVEAPwikhFIlThDpslgI ynspy OXDA_PIG : 177- 223: rggad ViiNCTGVwAgvLqp--DplLqPGRGQIIkVDAPwlknFIiThDlergI ynspy OXDA_RABIT : 177- 223: gggvd VivNCTGVwAsaLqp--DplLqPGRGQIIkVDAPwvkhFIiThDpesgI ykspy OXDA_RABIT : 179- 223: gvdvi V--NCTGVwAsaLqp--DplLqPGRGQIIkVDAPwvkhFIiThDpesgI ykspy OXDD_BOVIN : 179- 224: psfdi Vv-NCSGLgSrqLag--DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs OXDD_BOVIN : 180- 224: sfdiv V--NCSGLgSrqLag--DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs C 3: 84.1657 6( 6) N-[AC]-[ST]-G-[LV]-x-[AS]-x(2)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] Occurences: 6(6) OXDA_FUSSO : 193- 238: pniiv NATGLgSykLggveDktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_HUMAN : 180- 223: adviv NCTGVwAgaLqr--DplLqPGRGQIMkVDAPwmkhFIlThDpergI ynspy OXDA_MOUSE : 178- 221: vdvii NCTGVwAgaLqa--DasLqPGRGQIIqVEAPwikhFIlThDpslgI ynspy OXDA_PIG : 180- 223: advii NCTGVwAgvLqp--DplLqPGRGQIIkVDAPwlknFIiThDlergI ynspy OXDA_RABIT : 180- 223: vdviv NCTGVwAsaLqp--DplLqPGRGQIIkVDAPwvkhFIiThDpesgI ykspy OXDD_BOVIN : 181- 224: fdivv NCSGLgSrqLag--DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs D 4: 72.2246 7( 6) V-x(0,1)-H-x(0,1)-Y-G-H-[GS]-[GS]-x-G-x-[AQT]-x(2)-[WY]-G-[CT]-A-x-[EN]-[AV]-[ATV]-x-L-[FV]-[DGN]-[EKR]-x-[GLV] Occurences: 7(6) OXDA_FUSSO : 326- 354: detwi V-HnYGHSGwGyQgsYGCAeNVVqLVDKvG kaaks OXDA_HUMAN : 305- 334: psnte ViHnYGHGGyGlTihWGCAlEAAkLFGRiL eekkl OXDA_MOUSE : 303- 332: sssae ViHnYGHGGyGlTihWGCAmEAAnLFGKiL eekkl OXDA_PIG : 305- 334: ssnte ViHnYGHGGyGlTihWGCAlEVAkLFGKvL eernl OXDA_RABIT : 305- 334: pskte ViHnYGHGGyGlTihWGCAlEAAkLFGKiL eekks OXDD_BOVIN : 300- 329: srrlp VvHhYGHGSgGiAmhWGTAlEATrLVNEcV qvlrt OXDD_BOVIN : 301- 329: rrlpv VhH-YGHGSgGiAmhWGTAlEATrLVNEcV qvlrt OXDD_BOVIN : 301- 329: rrlpv V-HhYGHGSgGiAmhWGTAlEATrLVNEcV qvlrt E 5: 71.7246 7( 6) V-x(0,2)-H-x(0,1)-Y-G-H-[GS]-[GS]-x-G-x-[AQT]-x(2)-[WY]-G-[CT]-A-x-[EN]-[AV]-[ATV]-x-L-[FV]-[DGN]-[EKR]-x-[GLV] Occurences: 7(6) OXDA_FUSSO : 326- 354: detwi V--HnYGHSGwGyQgsYGCAeNVVqLVDKvG kaaks OXDA_HUMAN : 305- 334: psnte Vi-HnYGHGGyGlTihWGCAlEAAkLFGRiL eekkl OXDA_MOUSE : 303- 332: sssae Vi-HnYGHGGyGlTihWGCAmEAAnLFGKiL eekkl OXDA_PIG : 305- 334: ssnte Vi-HnYGHGGyGlTihWGCAlEVAkLFGKvL eernl OXDA_RABIT : 305- 334: pskte Vi-HnYGHGGyGlTihWGCAlEAAkLFGKiL eekks OXDD_BOVIN : 300- 329: srrlp VvhH-YGHGSgGiAmhWGTAlEATrLVNEcV qvlrt OXDD_BOVIN : 300- 329: srrlp Vv-HhYGHGSgGiAmhWGTAlEATrLVNEcV qvlrt OXDD_BOVIN : 301- 329: rrlpv Vh-H-YGHGSgGiAmhWGTAlEATrLVNEcV qvlrt OXDD_BOVIN : 301- 329: rrlpv V--HhYGHGSgGiAmhWGTAlEATrLVNEcV qvlrt F 6: 66.1394 8( 6) G-x(3,5)-L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] Occurences: 8(6) OXDA_FUSSO : 196- 238: ivnat GlgsykLggveDktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_FUSSO : 198- 238: natgl Gsyk--LggveDktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_HUMAN : 183- 223: ivnct GvwagaLqr--DplLqPGRGQIMkVDAPwmkhFIlThDpergI ynspy OXDA_MOUSE : 181- 221: iinct GvwagaLqa--DasLqPGRGQIIqVEAPwikhFIlThDpslgI ynspy OXDA_PIG : 183- 223: iinct GvwagvLqp--DplLqPGRGQIIkVDAPwlknFIiThDlergI ynspy OXDA_RABIT : 183- 223: ivnct GvwasaLqp--DplLqPGRGQIIkVDAPwvkhFIiThDpesgI ykspy OXDD_BOVIN : 184- 224: vvncs GlgsrqLag--DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs OXDD_BOVIN : 186- 224: ncsgl Gsrq--Lag--DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs G 7: 64.8845 6( 6) Y-G-H-[GS]-[GS]-x-G-x-[AQT]-x(2)-[WY]-G-[CT]-A-x-[EN]-[AV]-[ATV]-x-L-[FV]-[DGN]-[EKR]-x-[GLV] Occurences: 6(6) OXDA_FUSSO : 329- 354: wivhn YGHSGwGyQgsYGCAeNVVqLVDKvG kaaks OXDA_HUMAN : 309- 334: evihn YGHGGyGlTihWGCAlEAAkLFGRiL eekkl OXDA_MOUSE : 307- 332: evihn YGHGGyGlTihWGCAmEAAnLFGKiL eekkl OXDA_PIG : 309- 334: evihn YGHGGyGlTihWGCAlEVAkLFGKvL eernl OXDA_RABIT : 309- 334: evihn YGHGGyGlTihWGCAlEAAkLFGKiL eekks OXDD_BOVIN : 304- 329: pvvhh YGHGSgGiAmhWGTAlEATrLVNEcV qvlrt H 8: 62.9693 6( 6) L-x(2,4)-D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] Occurences: 6(6) OXDA_FUSSO : 202- 238: lgsyk LggveDktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_HUMAN : 189- 223: vwaga Lqr--DplLqPGRGQIMkVDAPwmkhFIlThDpergI ynspy OXDA_MOUSE : 187- 221: vwaga Lqa--DasLqPGRGQIIqVEAPwikhFIlThDpslgI ynspy OXDA_PIG : 189- 223: vwagv Lqp--DplLqPGRGQIIkVDAPwlknFIiThDlergI ynspy OXDA_RABIT : 189- 223: vwasa Lqp--DplLqPGRGQIIkVDAPwvkhFIiThDpesgI ykspy OXDD_BOVIN : 190- 224: lgsrq Lag--DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs I 9: 62.1979 6( 6) G-x-R-P-x-R-x(3,4)-R-[IL]-[EG]-[EKR]-E-x-L-x(2)-[DEG]-[PST]-x(4)-[NV]-x(4)-G-[HW]-G-x(2)-G Occurences: 6(6) OXDA_FUSSO : 303- 338: irhav GmRPwRkdgvRIEEEkLddETwivhNyghsGWGyqG sygca OXDA_HUMAN : 281- 315: igeat GfRPvRpqi-RLEREqLrtGPsnteVihnyGHGgyG ltihw OXDA_MOUSE : 279- 313: vgelt GfRPvRpqv-RLEREwLrfGSssaeVihnyGHGgyG ltihw OXDA_PIG : 281- 315: vgeyt GfRPvRpqv-RLEREqLrfGSsnteVihnyGHGgyG ltihw OXDA_RABIT : 281- 315: vgewt GfRPvRpqi-RLGREqLsaGPskteVihnyGHGgyG ltihw OXDD_BOVIN : 276- 310: lrerv GlRPtRpgv-RLEKElLaqDSrrlpVvhhyGHGsgG iamhw J 10: 61.6979 6( 6) G-x(0,1)-R-P-x-R-x(3,4)-R-[IL]-[EG]-[EKR]-E-x-L-x(2)-[DEG]-[PST]-x(4)-[NV]-x(4)-G-[HW]-G-x(2)-G Occurences: 6(6) OXDA_FUSSO : 303- 338: irhav GmRPwRkdgvRIEEEkLddETwivhNyghsGWGyqG sygca OXDA_HUMAN : 281- 315: igeat GfRPvRpqi-RLEREqLrtGPsnteVihnyGHGgyG ltihw OXDA_MOUSE : 279- 313: vgelt GfRPvRpqv-RLEREwLrfGSssaeVihnyGHGgyG ltihw OXDA_PIG : 281- 315: vgeyt GfRPvRpqv-RLEREqLrfGSsnteVihnyGHGgyG ltihw OXDA_RABIT : 281- 315: vgewt GfRPvRpqi-RLGREqLsaGPskteVihnyGHGgyG ltihw OXDD_BOVIN : 276- 310: lrerv GlRPtRpgv-RLEKElLaqDSrrlpVvhhyGHGsgG iamhw K 11: 59.7993 6( 6) D-x(2)-[ILM]-x-P-[AGV]-R-G-Q-[IV]-[ILMV]-x-V-[DEQR]-[AN]-[EP]-x(4)-[FL]-[IL]-x-[DST]-x-[DSV]-x(4)-[AI] Occurences: 6(6) OXDA_FUSSO : 207- 238: lggve DktMaPARGQIVvVRNEsspmLLtSgVedggA dvmyl OXDA_HUMAN : 192- 223: galqr DplLqPGRGQIMkVDAPwmkhFIlThDpergI ynspy OXDA_MOUSE : 190- 221: galqa DasLqPGRGQIIqVEAPwikhFIlThDpslgI ynspy OXDA_PIG : 192- 223: gvlqp DplLqPGRGQIIkVDAPwlknFIiThDlergI ynspy OXDA_RABIT : 192- 223: salqp DplLqPGRGQIIkVDAPwvkhFIiThDpesgI ykspy OXDD_BOVIN : 193- 224: rqlag DskIfPVRGQVLkVQAPwvkhFIrDsSgltyI ypgvs L 12: 58.1029 10( 6) V-x(0,1)-V-x(0,1)-G-A-G-V-[IM]-G-L-[ST]-[ST]-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] Occurences: 10(6) OXDA_FUSSO : 6- 27: msnti VvV-GAGVIGLTSALlLsKnkgN kitvv OXDA_FUSSO : 6- 27: msnti V-VvGAGVIGLTSALlLsKnkgN kitvv OXDA_FUSSO : 7- 27: sntiv V-V-GAGVIGLTSALlLsKnkgN kitvv OXDA_HUMAN : 3- 25: mr VvViGAGVIGLSTALcIhEryhS vlqpl OXDA_HUMAN : 4- 25: mrv V-ViGAGVIGLSTALcIhEryhS vlqpl OXDA_MOUSE : 3- 25: mr VaViGAGVIGLSTALcIhEryhP tqplh OXDA_PIG : 3- 25: mr VvViGAGVIGLSTALcIhEryhS vlqpl OXDA_PIG : 4- 25: mrv V-ViGAGVIGLSTALcIhEryhS vlqpl OXDA_RABIT : 3- 25: mr VvViGAGVIGLSTALcIhElyhS alqpl OXDA_RABIT : 4- 25: mrv V-ViGAGVIGLSTALcIhElyhS alqpl OXDD_BOVIN : 8- 28: tvria V-V-GAGVMGLSTAVcIsKmvpG csitv M 13: 54.9770 6( 6) V-[IV]-G-A-G-V-[IM]-G-L-x(0,1)-S-x(0,1)-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] Occurences: 6(6) OXDA_FUSSO : 7- 27: sntiv VVGAGVIGLtS-ALlLsKnkgN kitvv OXDA_HUMAN : 5- 25: mrvv VIGAGVIGL-StALcIhEryhS vlqpl OXDA_MOUSE : 5- 25: mrva VIGAGVIGL-StALcIhEryhP tqplh OXDA_PIG : 5- 25: mrvv VIGAGVIGL-StALcIhEryhS vlqpl OXDA_RABIT : 5- 25: mrvv VIGAGVIGL-StALcIhElyhS alqpl OXDD_BOVIN : 8- 28: tvria VVGAGVMGL-StAVcIsKmvpG csitv N 14: 54.4329 8( 6) V-x(0,1)-G-A-G-V-[IM]-G-L-[ST]-[ST]-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] Occurences: 8(6) OXDA_FUSSO : 7- 27: sntiv VvGAGVIGLTSALlLsKnkgN kitvv OXDA_FUSSO : 8- 27: ntivv V-GAGVIGLTSALlLsKnkgN kitvv OXDA_HUMAN : 5- 25: mrvv ViGAGVIGLSTALcIhEryhS vlqpl OXDA_MOUSE : 5- 25: mrva ViGAGVIGLSTALcIhEryhP tqplh OXDA_PIG : 5- 25: mrvv ViGAGVIGLSTALcIhEryhS vlqpl OXDA_RABIT : 5- 25: mrvv ViGAGVIGLSTALcIhElyhS alqpl OXDD_BOVIN : 8- 28: tvria VvGAGVMGLSTAVcIsKmvpG csitv OXDD_BOVIN : 9- 28: vriav V-GAGVMGLSTAVcIsKmvpG csitv O 15: 51.2565 7( 6) V-x(0,1)-H-x-Y-G-H-x(0,1)-G-x-G-x(2)-[AGI]-x-[HWY]-x-[CG]-[AT]-x(3)-[AV]-x(2)-[FLV]-[DGV]-x(4)-[AEQ] Occurences: 7(6) OXDA_FUSSO : 326- 356: detwi V-HnYGHsGwGyqGsYgCAenvVqlVDkvgkA akskl OXDA_HUMAN : 305- 336: psnte ViHnYGHgGyGltIhWgCAleaAklFGrileE kklsr OXDA_MOUSE : 303- 334: sssae ViHnYGHgGyGltIhWgCAmeaAnlFGkileE kklsr OXDA_PIG : 305- 336: ssnte ViHnYGHgGyGltIhWgCAlevAklFGkvleE rnllt OXDA_RABIT : 305- 336: pskte ViHnYGHgGyGltIhWgCAleaAklFGkileE kkssr OXDD_BOVIN : 300- 330: srrlp VvHhYGH-GsGgiAmHwGTaleAtrLVnecvQ vlrtp OXDD_BOVIN : 301- 330: rrlpv V-HhYGH-GsGgiAmHwGTaleAtrLVnecvQ vlrtp P 16: 47.5865 6( 6) H-x-Y-G-H-x(0,1)-G-x-G-x(2)-[AGI]-x-[HWY]-x-[CG]-[AT]-x(3)-[AV]-x(2)-[FLV]-[DGV]-x(4)-[AEQ] Occurences: 6(6) OXDA_FUSSO : 327- 356: etwiv HnYGHsGwGyqGsYgCAenvVqlVDkvgkA akskl OXDA_HUMAN : 307- 336: ntevi HnYGHgGyGltIhWgCAleaAklFGrileE kklsr OXDA_MOUSE : 305- 334: saevi HnYGHgGyGltIhWgCAmeaAnlFGkileE kklsr OXDA_PIG : 307- 336: ntevi HnYGHgGyGltIhWgCAlevAklFGkvleE rnllt OXDA_RABIT : 307- 336: ktevi HnYGHgGyGltIhWgCAleaAklFGkileE kkssr OXDD_BOVIN : 302- 330: rlpvv HhYGH-GsGgiAmHwGTaleAtrLVnecvQ vlrtp Q 17: 47.5820 6( 6) G-A-G-V-[IM]-G-L-x(0,1)-S-x(0,1)-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] Occurences: 6(6) OXDA_FUSSO : 9- 27: tivvv GAGVIGLtS-ALlLsKnkgN kitvv OXDA_HUMAN : 7- 25: rvvvi GAGVIGL-StALcIhEryhS vlqpl OXDA_MOUSE : 7- 25: rvavi GAGVIGL-StALcIhEryhP tqplh OXDA_PIG : 7- 25: rvvvi GAGVIGL-StALcIhEryhS vlqpl OXDA_RABIT : 7- 25: rvvvi GAGVIGL-StALcIhElyhS alqpl OXDD_BOVIN : 10- 28: riavv GAGVMGL-StAVcIsKmvpG csitv R 18: 45.2193 8( 6) V-x(0,1)-G-A-G-V-[IM]-G-L-x(0,1)-S-[AT]-[AL]-[LV] Occurences: 8(6) OXDA_FUSSO : 7- 20: sntiv VvGAGVIGLtSALL lsknk OXDA_FUSSO : 8- 20: ntivv V-GAGVIGLtSALL lsknk OXDA_HUMAN : 5- 17: mrvv ViGAGVIGL-STAL ciher OXDA_MOUSE : 5- 17: mrva ViGAGVIGL-STAL ciher OXDA_PIG : 5- 17: mrvv ViGAGVIGL-STAL ciher OXDA_RABIT : 5- 17: mrvv ViGAGVIGL-STAL cihel OXDD_BOVIN : 8- 20: tvria VvGAGVMGL-STAV ciskm OXDD_BOVIN : 9- 20: vriav V-GAGVMGL-STAV ciskm S 19: 43.4120 6( 6) A-G-V-[IM]-G-L-x(0,1)-S-x(0,1)-A-[LV]-x-[IL]-x-[EK]-x(3)-[GNPS] Occurences: 6(6) OXDA_FUSSO : 10- 27: ivvvg AGVIGLtS-ALlLsKnkgN kitvv OXDA_HUMAN : 8- 25: vvvig AGVIGL-StALcIhEryhS vlqpl OXDA_MOUSE : 8- 25: vavig AGVIGL-StALcIhEryhP tqplh OXDA_PIG : 8- 25: vvvig AGVIGL-StALcIhEryhS vlqpl OXDA_RABIT : 8- 25: vvvig AGVIGL-StALcIhElyhS alqpl OXDD_BOVIN : 11- 28: iavvg AGVMGL-StAVcIsKmvpG csitv T 20: 38.4460 6( 6) R-x(4,5)-G-x-G-V-x-G-L-S-[TV]-[AI]-x(2)-[AI] Occurences: 6(6) OXDA_FUSSO : 283- 301: rivev RpeianGkGVkGLSVIrhA vgmrp OXDA_HUMAN : 2- 19: m Rvvvi-GaGViGLSTAlcI heryh OXDA_MOUSE : 2- 19: m Rvavi-GaGViGLSTAlcI heryh OXDA_PIG : 2- 19: m Rvvvi-GaGViGLSTAlcI heryh OXDA_RABIT : 2- 19: m Rvvvi-GaGViGLSTAlcI helyh OXDD_BOVIN : 5- 22: mdtv Riavv-GaGVmGLSTAvcI skmvp Number of patterns evaluated by Pratt:9992 Total running time: 4 seconds