------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file DALA_DALA_LIGASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DALA_DALA_LIGASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DDLA_ECOLI 364 DDLA_SALTY 363 DDLB_ECOLI 305 DDL_ANACE 205 DDL_HAEIN 306 DDL_THEMA 128 VANA_ENTFC 343 VANB_ENTFC 196 VANC_ENTGA 343 Pratt run started at Thu Feb 6 19:16:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 9( 9) S-x(5)-K-x(0,1)-V-x(4,5)-L 2: 15.6802 10( 9) S-x-G-x(1,2)-K-x(0,1)-V 3: 15.1802 9( 9) G-x(2,4)-G-x(0,1)-E-D 4: 12.5102 10( 9) E-D-G 5: 12.5102 9( 9) G-x(4)-E-x(3)-S 6: 12.0102 10( 9) L-x(3)-G-x(1,2)-R 7: 12.0102 10( 9) G-E-x(0,1)-D 8: 12.0102 11( 9) G-x(0,1)-E-D 9: 12.0102 11( 9) G-x(1,2)-D-G 10: 12.0102 13( 9) G-x(2)-G-x(4,5)-L 11: 12.0102 12( 9) H-x(4,5)-E-x-G 12: 12.0102 15( 9) L-x(0,1)-G-x(2)-G 13: 12.0102 13( 9) V-L-x(0,1)-G 14: 12.0102 11( 9) V-x(5)-G-x(2,3)-G 15: 12.0102 9( 9) V-x(3)-L-x(4,5)-G 16: 12.0102 13( 9) G-x(2)-V-x(2,3)-A 17: 12.0102 17( 9) G-x(3,4)-E-x(3)-S 18: 12.0102 9( 9) G-G-x(3,4)-E 19: 11.5102 12( 9) V-x(4)-L-x(1,3)-G 20: 11.5102 18( 9) V-x(3,4)-L-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 43.8351 9( 9) G-x(2,4)-G-x(0,1)-E-D-[DG]-x(3)-[AG]-x-[FLV]-[DER]-x(3)-[IL]-x-[FHY]-[GTV]-x(3)-[AIV]-x-[AQS]-[ES] B 2: 40.6651 11( 9) G-x(0,1)-E-D-[DG]-x(3)-[AG]-x-[FLV]-[DER]-x(3)-[IL]-x-[FHY]-[GTV]-x(3)-[AIV]-x-[AQS]-[ES] C 3: 35.1111 9( 9) H-x(4,5)-E-[DK]-G-[CST]-x-[NQS]-[AG]-[ILM]-[FIL]-x(3)-[AGN]-x(3)-[TV] D 4: 31.1009 9( 9) G-x(4)-E-x-[ADES]-[IV]-S-[GLV]-x-[EGS]-[AGV]-x(2)-[AIV]-x(2)-[AGN] E 5: 30.6009 17( 9) G-x(3,4)-E-x-[ADES]-[IV]-S-[GLV]-x-[EGS]-[AGV]-x(2)-[AIV]-x(2)-[AGN] F 6: 23.2853 9( 9) S-x(2)-[CG]-[FILMV]-x-K-x(0,1)-V-x(4,5)-L-x(3)-[GILV] G 7: 20.7721 9( 9) L-x(0,1)-G-x(2)-G-x-[AD]-x-[CTV]-x(3)-[ILM] H 8: 20.7026 9( 9) G-E-x(0,1)-D-[GQ]-x(3)-[AGQS]-x-[GL] I 9: 18.6257 9( 9) L-x(3)-G-x(1,2)-R-x(3)-[FIMV]-x(3)-[DENQRS]-[EGN] J 10: 17.4182 9( 9) G-x-[DR]-G-x(4,5)-L-x(3)-[EGNS] K 11: 17.3431 9( 9) E-D-G-[CGST]-x(2)-[AGL] L 12: 17.3103 10( 9) V-x(3,4)-L-x(0,1)-G-x(2)-[GL]-x-[ADV] M 13: 17.3100 9( 9) S-x-G-x(1,2)-K-x(0,1)-V-x-[ADNSTV] N 14: 17.2834 9( 9) G-x(2)-V-x(2,3)-A-[ALV]-x(2)-[DGN] O 15: 16.5246 10( 9) V-x(2)-[AGS]-x(2)-G-x(2,3)-G-x(3)-[ACGTV] P 16: 16.5116 9( 9) V-L-x(0,1)-G-[CGNT]-x-[AGNS] Q 17: 14.6881 11( 9) G-x(1,2)-D-G-x(3)-[AGI] R 18: 12.0102 9( 9) V-x(3)-L-x(4,5)-G S 19: 12.0102 13( 9) G-x(2)-V-x(2,3)-A T 20: 12.0102 17( 9) G-x(3,4)-E-x(3)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 43.8351 9( 9) G-x(2,4)-G-x(0,1)-E-D-[DG]-x(3)-[AG]-x-[FLV]-[DER]-x(3)-[IL]-x-[FHY]-[GTV]-x(3)-[AIV]-x-[AQS]-[ES] Occurences: 9(9) DDLA_ECOLI : 108- 135: fpivh Gtl--G-EDGslqGmLRvanLpFVgsdVlAS aacmd DDLA_SALTY : 107- 134: fpivh Gtl--G-EDGslqGmLRvanLpFVgsdVlSS aacmd DDLB_ECOLI : 63- 90: fialh Grg--G-EDGtlqGmLElmgLpYTgsgVmAS alsmd DDL_ANACE : 74- 101: ynalh Ggq--G-EDGcasGlLDilgLaYThsrVaAS svgmd DDL_HAEIN : 67- 94: fnilh Grg--G-EDGtmqGlLEqigLpYTgcgVmAS altmd DDL_THEMA : 73- 100: fnvlh Gtf--G-EDGtlqAiLDflgIrYTgsdAfSS micfd VANA_ENTFC : 100- 127: fsalh Gks--G-EDGsiqGlFElsgIpFVgcdIqSS aicmd VANB_ENTFC : 106- 136: sgcev GcavmGnEDDlivGeVDqirLsHGifrIhQE nepek VANC_ENTGA : 97- 124: fpvlh Gky--G-EDGciqGlLElmnLpYVgchVaAS alcmn B 2: 40.6651 11( 9) G-x(0,1)-E-D-[DG]-x(3)-[AG]-x-[FLV]-[DER]-x(3)-[IL]-x-[FHY]-[GTV]-x(3)-[AIV]-x-[AQS]-[ES] Occurences: 11(9) DDLA_ECOLI : 111- 135: vhgtl G-EDGslqGmLRvanLpFVgsdVlAS aacmd DDLA_SALTY : 110- 134: vhgtl G-EDGslqGmLRvanLpFVgsdVlSS aacmd DDLB_ECOLI : 65- 90: alhgr GgEDGtlqGmLElmgLpYTgsgVmAS alsmd DDLB_ECOLI : 66- 90: lhgrg G-EDGtlqGmLElmgLpYTgsgVmAS alsmd DDL_ANACE : 77- 101: lhggq G-EDGcasGlLDilgLaYThsrVaAS svgmd DDL_HAEIN : 69- 94: ilhgr GgEDGtmqGlLEqigLpYTgcgVmAS altmd DDL_HAEIN : 70- 94: lhgrg G-EDGtmqGlLEqigLpYTgcgVmAS altmd DDL_THEMA : 76- 100: lhgtf G-EDGtlqAiLDflgIrYTgsdAfSS micfd VANA_ENTFC : 103- 127: lhgks G-EDGsiqGlFElsgIpFVgcdIqSS aicmd VANB_ENTFC : 111- 136: gcavm GnEDDlivGeVDqirLsHGifrIhQE nepek VANC_ENTGA : 100- 124: lhgky G-EDGciqGlLElmnLpYVgchVaAS alcmn C 3: 35.1111 9( 9) H-x(4,5)-E-[DK]-G-[CST]-x-[NQS]-[AG]-[ILM]-[FIL]-x(3)-[AGN]-x(3)-[TV] Occurences: 9(9) DDLA_ECOLI : 107- 128: ifpiv Hgtlg-EDGSlQGMLrvaNlpfV gsdvl DDLA_SALTY : 106- 127: ifpiv Hgtlg-EDGSlQGMLrvaNlpfV gsdvl DDLB_ECOLI : 62- 83: vfial Hgrgg-EDGTlQGMLelmGlpyT gsgvm DDL_ANACE : 73- 94: vynal Hggqg-EDGCaSGLLdilGlayT hsrva DDL_HAEIN : 66- 87: afnil Hgrgg-EDGTmQGLLeqiGlpyT gcgvm DDL_THEMA : 72- 93: vfnvl Hgtfg-EDGTlQAILdflGiryT gsdaf VANA_ENTFC : 99- 120: afsal Hgksg-EDGSiQGLFelsGipfV gcdiq VANB_ENTFC : 134- 156: gifri HqenepEKGSeNAMIivpAdipV eernr VANC_ENTGA : 96- 117: lfpvl Hgkyg-EDGCiQGLLelmNlpyV gchva D 4: 31.1009 9( 9) G-x(4)-E-x-[ADES]-[IV]-S-[GLV]-x-[EGS]-[AGV]-x(2)-[AIV]-x(2)-[AGN] Occurences: 9(9) DDLA_ECOLI : 11- 30: vgivf GgksaEhEVSLqSAknIvdA idksr DDLA_SALTY : 10- 29: vgivf GgksaEhEVSLqSAknIvdA idktr DDLB_ECOLI : 9- 28: iavll GgtsaErEVSLnSGaaVlaG lregg DDL_ANACE : 20- 39: iavlc GgsspErEVSLaGGkrIadA lgrlg DDL_HAEIN : 13- 32: iavll GgtsaErEVSLnSGkaVleA llkqg DDL_THEMA : 18- 37: vallm GgvsrErEISLrSGerVkkA leklg VANA_ENTFC : 11- 30: vailf GgcseEhDVSVkSAieIaaN inkek VANB_ENTFC : 92- 111: agqyd GkiliEqAISGcEVgcAvmG neddl VANC_ENTGA : 9- 28: iavlf GgnspEySVSLtSAasViqA idplk E 5: 30.6009 17( 9) G-x(3,4)-E-x-[ADES]-[IV]-S-[GLV]-x-[EGS]-[AGV]-x(2)-[AIV]-x(2)-[AGN] Occurences: 17(9) DDLA_ECOLI : 11- 30: vgivf GgksaEhEVSLqSAknIvdA idksr DDLA_ECOLI : 12- 30: givfg Gksa-EhEVSLqSAknIvdA idksr DDLA_SALTY : 10- 29: vgivf GgksaEhEVSLqSAknIvdA idktr DDLA_SALTY : 11- 29: givfg Gksa-EhEVSLqSAknIvdA idktr DDLB_ECOLI : 9- 28: iavll GgtsaErEVSLnSGaaVlaG lregg DDLB_ECOLI : 10- 28: avllg Gtsa-ErEVSLnSGaaVlaG lregg DDL_ANACE : 20- 39: iavlc GgsspErEVSLaGGkrIadA lgrlg DDL_ANACE : 21- 39: avlcg Gssp-ErEVSLaGGkrIadA lgrlg DDL_HAEIN : 13- 32: iavll GgtsaErEVSLnSGkaVleA llkqg DDL_HAEIN : 14- 32: avllg Gtsa-ErEVSLnSGkaVleA llkqg DDL_THEMA : 18- 37: vallm GgvsrErEISLrSGerVkkA leklg DDL_THEMA : 19- 37: allmg Gvsr-ErEISLrSGerVkkA leklg VANA_ENTFC : 11- 30: vailf GgcseEhDVSVkSAieIaaN inkek VANA_ENTFC : 12- 30: ailfg Gcse-EhDVSVkSAieIaaN inkek VANB_ENTFC : 92- 111: agqyd GkiliEqAISGcEVgcAvmG neddl VANC_ENTGA : 9- 28: iavlf GgnspEySVSLtSAasViqA idplk VANC_ENTGA : 10- 28: avlfg Gnsp-EySVSLtSAasViqA idplk F 6: 23.2853 9( 9) S-x(2)-[CG]-[FILMV]-x-K-x(0,1)-V-x(4,5)-L-x(3)-[GILV] Occurences: 9(9) DDLA_ECOLI : 135- 152: sdvla SaaCMdKdVtkrl-LrdaG lniap DDLA_SALTY : 134- 151: sdvls SaaCMdKdVakrl-LrdaG lniap DDLB_ECOLI : 149- 166: psreg SsvGMsKvVaena-LqdaL rlafq DDLB_ECOLI : 149- 166: psreg SsvGMsK-VvaenaLqdaL rlafq DDL_ANACE : 101- 118: srvaa SsvGMdK-VltkhvLkslG idfpe DDL_HAEIN : 150- 167: psleg SsvGLtK-VkaveeLksaV eyalk DDL_THEMA : 100- 117: sdafs SmiCFdKlVtyrf-LkgtV eipdf VANA_ENTFC : 177- 194: parsg SsfGVkK-VnsadeLdyaI esarq VANB_ENTFC : 67- 84: parsg SsfGVtK-VnsteeLnaaI eaagq VANC_ENTGA : 180- 197: pneag SskGItK-VtdktaLqsaL ttafa G 7: 20.7721 9( 9) L-x(0,1)-G-x(2)-G-x-[AD]-x-[CTV]-x(3)-[ILM] Occurences: 9(9) DDLA_ECOLI : 293- 305: qayqt L-GcaGmArVdvfL tpene DDLA_SALTY : 292- 304: qayqt L-GcaGmArVdvfL tadne DDLB_ECOLI : 61- 74: kvfia LhGrgGeDgTlqgM lelmg DDL_ANACE : 72- 85: lvyna LhGgqGeDgCasgL ldilg DDL_HAEIN : 65- 78: rafni LhGrgGeDgTmqgL leqig DDL_THEMA : 71- 84: vvfnv LhGtfGeDgTlqaI ldflg VANA_ENTFC : 283- 295: kiyka L-GcrGlArVdmfL qdngr VANB_ENTFC : 173- 185: kvyrv L-GcrGlArVdlfL qedgg VANC_ENTGA : 95- 108: vlfpv LhGkyGeDgCiqgL lelmn H 8: 20.7026 9( 9) G-E-x(0,1)-D-[GQ]-x(3)-[AGQS]-x-[GL] Occurences: 9(9) DDLA_ECOLI : 111- 120: vhgtl GE-DGslqGmL rvanl DDLA_SALTY : 110- 119: vhgtl GE-DGslqGmL rvanl DDLB_ECOLI : 66- 75: lhgrg GE-DGtlqGmL elmgl DDL_ANACE : 77- 86: lhggq GE-DGcasGlL dilgl DDL_HAEIN : 70- 79: lhgrg GE-DGtmqGlL eqigl DDL_THEMA : 76- 85: lhgtf GE-DGtlqAiL dflgi VANA_ENTFC : 229- 239: aalvv GEvDQirlQyG ifrih VANB_ENTFC : 119- 129: ddliv GEvDQirlShG ifrih VANC_ENTGA : 100- 109: lhgky GE-DGciqGlL elmnl I 9: 18.6257 9( 9) L-x(3)-G-x(1,2)-R-x(3)-[FIMV]-x(3)-[DENQRS]-[EGN] Occurences: 9(9) DDLA_ECOLI : 293- 309: qayqt LgcaGmaRvdvFltpEN evvin DDLA_SALTY : 292- 308: qayqt LgcaGmaRvdvFltaDN evvin DDLB_ECOLI : 247- 263: kawtt LgckGwgRidvMldsDG qfyll DDL_ANACE : 40- 55: riada LgrlGh-RaavVdlnRE sahql DDL_HAEIN : 53- 69: ynvan LkkdGfnRafnIlhgRG gedgt DDL_THEMA : 15- 31: tvrva LlmgGvsRereIslrSG ervkk VANA_ENTFC : 283- 299: kiyka LgcrGlaRvdmFlqdNG rivln VANB_ENTFC : 173- 189: kvyrv LgcrGlaRvdlFlqeDG givln VANC_ENTGA : 281- 297: llyrn LgltGlaRidfFvtnQG aiyln J 10: 17.4182 9( 9) G-x-[DR]-G-x(4,5)-L-x(3)-[EGNS] Occurences: 9(9) DDLA_ECOLI : 111- 124: vhgtl GeDGslqgmLrvaN lpfvg DDLA_SALTY : 110- 123: vhgtl GeDGslqgmLrvaN lpfvg DDLB_ECOLI : 66- 79: lhgrg GeDGtlqgmLelmG lpytg DDL_ANACE : 77- 90: lhggq GeDGcasglLdilG layth DDL_HAEIN : 70- 83: lhgrg GeDGtmqglLeqiG lpytg DDL_THEMA : 76- 89: lhgtf GeDGtlqaiLdflG irytg VANA_ENTFC : 103- 115: lhgks GeDGsiqg-LfelS gipfv VANB_ENTFC : 174- 187: vyrvl GcRGlarvdLflqE dggiv VANC_ENTGA : 100- 113: lhgky GeDGciqglLelmN lpyvg K 11: 17.3431 9( 9) E-D-G-[CGST]-x(2)-[AGL] Occurences: 9(9) DDLA_ECOLI : 112- 118: hgtlg EDGSlqG mlrva DDLA_SALTY : 111- 117: hgtlg EDGSlqG mlrva DDLB_ECOLI : 67- 73: hgrgg EDGTlqG mlelm DDL_ANACE : 78- 84: hggqg EDGCasG lldil DDL_HAEIN : 71- 77: hgrgg EDGTmqG lleqi DDL_THEMA : 77- 83: hgtfg EDGTlqA ildfl VANA_ENTFC : 104- 110: hgksg EDGSiqG lfels VANB_ENTFC : 187- 193: dlflq EDGGivL nev VANC_ENTGA : 101- 107: hgkyg EDGCiqG llelm L 12: 17.3103 10( 9) V-x(3,4)-L-x(0,1)-G-x(2)-[GL]-x-[ADV] Occurences: 10(9) DDLA_ECOLI : 174- 184: isfae Vesk-L-GlpLfV kpanq DDLA_SALTY : 173- 183: fsfae Vesr-L-GlpLfV kpanq DDLB_ECOLI : 57- 68: mgfqk Vfia-LhGrgGeD gtlqg DDL_ANACE : 68- 79: mapdl Vyna-LhGgqGeD gcasg DDL_HAEIN : 133- 143: ldpqa Vvak-L-GlpLmV kpsle DDL_THEMA : 66- 78: lksfd VvfnvLhGtfGeD gtlqa DDL_THEMA : 67- 78: ksfdv Vfnv-LhGtfGeD gtlqa VANA_ENTFC : 93- 105: inhvd VafsaLhGksGeD gsiqg VANB_ENTFC : 169- 179: etakk Vyrv-L-GcrGlA rvdlf VANC_ENTGA : 90- 102: rivpd VlfpvLhGkyGeD gciqg M 13: 17.3100 9( 9) S-x-G-x(1,2)-K-x(0,1)-V-x-[ADNSTV] Occurences: 9(9) DDLA_ECOLI : 192- 200: anqgs SvGvsK-VtS eeqya DDLA_SALTY : 191- 199: anqgs SvGvsK-VaN eaqyq DDLB_ECOLI : 150- 158: sregs SvGmsK-VvA enalq DDL_ANACE : 102- 110: rvaas SvGmdK-VlT khvlk DDL_HAEIN : 151- 159: slegs SvGltK-VkA veelk DDL_THEMA : 5- 13: meky SwGg-KtVrV allmg VANA_ENTFC : 178- 186: arsgs SfGvkK-VnS adeld VANA_ENTFC : 178- 186: arsgs SfGv-KkVnS adeld VANB_ENTFC : 68- 76: arsgs SfGvtK-VnS teeln VANC_ENTGA : 181- 189: neags SkGitK-VtD ktalq N 14: 17.2834 9( 9) G-x(2)-V-x(2,3)-A-[ALV]-x(2)-[DGN] Occurences: 9(9) DDLA_ECOLI : 129- 140: nlpfv GsdVlasAAcmD kdvtk DDLA_SALTY : 128- 139: nlpfv GsdVlssAAcmD kdvak DDLB_ECOLI : 84- 95: glpyt GsgVmasALsmD klrsk DDL_ANACE : 187- 197: eeyip GqeVht-AVflG raigt DDL_HAEIN : 88- 99: glpyt GcgVmasALtmD kmrtk DDL_THEMA : 8- 18: kyswg GktVrv-ALlmG gvsre VANA_ENTFC : 212- 222: eqavs GceVgc-AVlgN saalv VANB_ENTFC : 102- 112: eqais GceVgc-AVmgN eddli VANC_ENTGA : 118- 129: nlpyv GchVaasALcmN kwllh O 15: 16.5246 10( 9) V-x(2)-[AGS]-x(2)-G-x(2,3)-G-x(3)-[ACGTV] Occurences: 10(9) DDLA_ECOLI : 184- 198: glplf VkpAnqGssvGvskV tseeq DDLA_SALTY : 183- 197: glplf VkpAnqGssvGvskV aneaq DDLB_ECOLI : 57- 70: mgfqk VfiAlhGrg-GedgT lqgml DDLB_ECOLI : 142- 156: glpvi VkpSreGssvGmskV vaena DDL_ANACE : 68- 81: mapdl VynAlhGgq-GedgC asgll DDL_HAEIN : 143- 157: glplm VkpSleGssvGltkV kavee DDL_THEMA : 70- 83: dvvfn VlhGtfGed-GtlqA ildfl VANA_ENTFC : 170- 184: typvf VkpArsGssfGvkkV nsade VANB_ENTFC : 60- 74: typvf VkpArsGssfGvtkV nstee VANC_ENTGA : 94- 107: dvlfp VlhGkyGed-GciqG llelm P 16: 16.5116 9( 9) V-L-x(0,1)-G-[CGNT]-x-[AGNS] Occurences: 9(9) DDLA_ECOLI : 233- 238: eieca VL-GNdN pqast DDLA_SALTY : 232- 237: eieca VL-GNdN pqast DDLB_ECOLI : 6- 12: tdkia VLlGGtS aerev DDL_ANACE : 17- 23: vlsia VLcGGsS perev DDL_HAEIN : 10- 16: qekia VLlGGtS aerev DDL_THEMA : 70- 76: dvvfn VLhGTfG edgtl VANA_ENTFC : 219- 224: evgca VL-GNsA alvvg VANB_ENTFC : 172- 177: kkvyr VL-GCrG larvd VANC_ENTGA : 6- 12: mkkia VLfGGnS peysv Q 17: 14.6881 11( 9) G-x(1,2)-D-G-x(3)-[AGI] Occurences: 11(9) DDLA_ECOLI : 111- 118: vhgtl Ge-DGslqG mlrva DDLA_SALTY : 110- 117: vhgtl Ge-DGslqG mlrva DDLB_ECOLI : 65- 73: alhgr GgeDGtlqG mlelm DDLB_ECOLI : 66- 73: lhgrg Ge-DGtlqG mlelm DDL_ANACE : 77- 84: lhggq Ge-DGcasG lldil DDL_HAEIN : 69- 77: ilhgr GgeDGtmqG lleqi DDL_HAEIN : 70- 77: lhgrg Ge-DGtmqG lleqi DDL_THEMA : 76- 83: lhgtf Ge-DGtlqA ildfl VANA_ENTFC : 103- 110: lhgks Ge-DGsiqG lfels VANB_ENTFC : 88- 96: aieaa GqyDGkilI eqais VANC_ENTGA : 100- 107: lhgky Ge-DGciqG llelm R 18: 12.0102 9( 9) V-x(3)-L-x(4,5)-G Occurences: 9(9) DDLA_ECOLI : 143- 152: cmdkd VtkrLlrda-G lniap DDLA_SALTY : 142- 151: cmdkd VakrLlrda-G lniap DDLB_ECOLI : 57- 66: mgfqk VfiaLhgrg-G edgtl DDL_ANACE : 68- 77: mapdl VynaLhggq-G edgca DDL_HAEIN : 143- 153: glplm VkpsLegssvG ltkvk DDL_THEMA : 67- 76: ksfdv VfnvLhgtf-G edgtl VANA_ENTFC : 260- 270: navit VpadLsaeerG riqet VANB_ENTFC : 181- 190: rglar VdlfLqedg-G ivlne VANC_ENTGA : 87- 97: gekri VpdvLfpvlhG kyged S 19: 12.0102 13( 9) G-x(2)-V-x(2,3)-A Occurences: 13(9) DDLA_ECOLI : 129- 136: nlpfv GsdVlasA acmdk DDLA_ECOLI : 265- 272: yided GakVvvpA aiape DDLA_SALTY : 128- 135: nlpfv GsdVlssA acmdk DDLA_SALTY : 264- 271: yiddn GaqVvvpA qipse DDLB_ECOLI : 84- 91: glpyt GsgVmasA lsmdk DDL_ANACE : 187- 193: eeyip GqeVht-A vflgr DDL_HAEIN : 26- 32: vslns GkaVle-A llkqg DDL_HAEIN : 88- 95: glpyt GcgVmasA ltmdk DDL_THEMA : 8- 14: kyswg GktVrv-A llmgg DDL_THEMA : 31- 37: islrs GerVkk-A leklg VANA_ENTFC : 212- 218: eqavs GceVgc-A vlgns VANB_ENTFC : 102- 108: eqais GceVgc-A vmgne VANC_ENTGA : 118- 125: nlpyv GchVaasA lcmnk T 20: 12.0102 17( 9) G-x(3,4)-E-x(3)-S Occurences: 17(9) DDLA_ECOLI : 11- 20: vgivf GgksaEhevS lqsak DDLA_ECOLI : 12- 20: givfg Gksa-EhevS lqsak DDLA_SALTY : 10- 19: vgivf GgksaEhevS lqsak DDLA_SALTY : 11- 19: givfg Gksa-EhevS lqsak DDLB_ECOLI : 9- 18: iavll GgtsaErevS lnsga DDLB_ECOLI : 10- 18: avllg Gtsa-ErevS lnsga DDL_ANACE : 20- 29: iavlc GgsspErevS laggk DDL_ANACE : 21- 29: avlcg Gssp-ErevS laggk DDL_HAEIN : 13- 22: iavll GgtsaErevS lnsgk DDL_HAEIN : 14- 22: avllg Gtsa-ErevS lnsgk DDL_THEMA : 18- 27: vallm GgvsrEreiS lrsge DDL_THEMA : 19- 27: allmg Gvsr-EreiS lrsge VANA_ENTFC : 11- 20: vailf GgcseEhdvS vksai VANA_ENTFC : 12- 20: ailfg Gcse-EhdvS vksai VANB_ENTFC : 92- 101: agqyd GkiliEqaiS gcevg VANC_ENTGA : 9- 18: iavlf GgnspEysvS ltsaa VANC_ENTGA : 10- 18: avlfg Gnsp-EysvS ltsaa Number of patterns evaluated by Pratt:1653 Total running time: 2 seconds