------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file DALA_DALA_LIGASE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename DALA_DALA_LIGASE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DDLA_ECOLI 364 DDLA_SALTY 363 DDLB_ECOLI 305 DDL_ANACE 205 DDL_HAEIN 306 DDL_THEMA 128 VANA_ENTFC 343 VANC_ENTGA 343 Pratt run started at Thu Feb 6 19:15:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 8( 8) H-G-x(2)-G-E-D-G 2: 20.8503 8( 8) G-x(2)-G-E-D-G 3: 20.8503 8( 8) G-G-x-S-x-E-x(3)-S 4: 19.8503 8( 8) V-x(3,4)-G-x(1,2)-S-x-E-x(3)-S 5: 16.6802 8( 8) G-E-D-G 6: 16.6802 8( 8) G-x-S-x-E-x(3)-S 7: 15.6802 8( 8) S-x(5)-K-x(0,1)-V-x(4,5)-L 8: 15.6802 8( 8) L-x(0,1)-G-x(2)-G-x(2,3)-G 9: 15.6802 9( 8) S-x-G-x(1,2)-K-x(0,1)-V 10: 12.5102 9( 8) E-D-G 11: 12.5102 8( 8) S-x-E-x(3)-S 12: 12.0102 9( 8) L-x(3)-G-x(1,2)-R 13: 12.0102 10( 8) I-x(3,4)-L-G 14: 12.0102 14( 8) A-x-L-x(2,3)-G 15: 12.0102 12( 8) V-L-x(0,1)-G 16: 12.0102 10( 8) V-x(5)-G-x(2,3)-G 17: 12.0102 8( 8) V-x(3)-L-x(4,5)-G 18: 12.0102 10( 8) D-x(5)-L-x(3,4)-G 19: 12.0102 13( 8) L-x(5)-V-x(2,3)-L 20: 12.0102 8( 8) L-G-x(4,5)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 84.1642 8( 8) H-G-x(2)-G-E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K B 2: 79.9942 8( 8) G-x(2)-G-E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K C 3: 75.8241 8( 8) G-E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K D 4: 71.6541 8( 8) E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K E 5: 45.3914 8( 8) G-G-x-S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] F 6: 44.3914 8( 8) V-x(3,4)-G-x(1,2)-S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] G 7: 41.2213 8( 8) G-x-S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] H 8: 37.0513 8( 8) S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] I 9: 26.2921 8( 8) A-x-L-x(2,3)-G-x-[DS]-x(3)-[DES]-[AIV]-[AS]-x(2)-[DGS] J 10: 23.2853 8( 8) S-x(2)-[CG]-[FILMV]-x-K-x(0,1)-V-x(4,5)-L-x(3)-[GILV] K 11: 20.9205 8( 8) L-x(0,1)-G-x(2)-G-x(2,3)-G-x(2)-[QRS]-[AGV] L 12: 19.7029 8( 8) D-x(5)-L-x(3,4)-G-x-[DGNP]-x-[ACPTV]-[AGILPV]-x(4)-[ADEST] M 13: 18.6257 8( 8) L-x(3)-G-x(1,2)-R-x(3)-[FIMV]-x(3)-[DENQRS]-[EGN] N 14: 17.3100 8( 8) S-x-G-x(1,2)-K-x(0,1)-V-x-[ADNSTV] O 15: 16.8959 8( 8) V-L-x(0,1)-G-[GNT]-x-[AGNS] P 16: 16.5246 9( 8) V-x(2)-[AGS]-x(2)-G-x(2,3)-G-x(3)-[ACGTV] Q 17: 14.6584 8( 8) L-G-x(4,5)-V-x-[DGP] R 18: 12.0102 10( 8) I-x(3,4)-L-G S 19: 12.0102 8( 8) V-x(3)-L-x(4,5)-G T 20: 12.0102 13( 8) L-x(5)-V-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 84.1642 8( 8) H-G-x(2)-G-E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K Occurences: 8(8) DDLA_ECOLI : 107- 141: ifpiv HGtlGEDGSlQGMLRvaNLpFVgSdVlASaACMDK dvtkr DDLA_SALTY : 106- 140: ifpiv HGtlGEDGSlQGMLRvaNLpFVgSdVlSSaACMDK dvakr DDLB_ECOLI : 62- 96: vfial HGrgGEDGTlQGMLElmGLpYTgSgVmASaLSMDK lrskl DDL_ANACE : 73- 107: vynal HGgqGEDGCaSGLLDilGLaYThSrVaASsVGMDK vltkh DDL_HAEIN : 66- 100: afnil HGrgGEDGTmQGLLEqiGLpYTgCgVmASaLTMDK mrtkm DDL_THEMA : 72- 106: vfnvl HGtfGEDGTlQAILDflGIrYTgSdAfSSmICFDK lvtyr VANA_ENTFC : 99- 133: afsal HGksGEDGSiQGLFElsGIpFVgCdIqSSaICMDK sltyi VANC_ENTGA : 96- 130: lfpvl HGkyGEDGCiQGLLElmNLpYVgChVaASaLCMNK wllhq B 2: 79.9942 8( 8) G-x(2)-G-E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K Occurences: 8(8) DDLA_ECOLI : 108- 141: fpivh GtlGEDGSlQGMLRvaNLpFVgSdVlASaACMDK dvtkr DDLA_SALTY : 107- 140: fpivh GtlGEDGSlQGMLRvaNLpFVgSdVlSSaACMDK dvakr DDLB_ECOLI : 63- 96: fialh GrgGEDGTlQGMLElmGLpYTgSgVmASaLSMDK lrskl DDL_ANACE : 74- 107: ynalh GgqGEDGCaSGLLDilGLaYThSrVaASsVGMDK vltkh DDL_HAEIN : 67- 100: fnilh GrgGEDGTmQGLLEqiGLpYTgCgVmASaLTMDK mrtkm DDL_THEMA : 73- 106: fnvlh GtfGEDGTlQAILDflGIrYTgSdAfSSmICFDK lvtyr VANA_ENTFC : 100- 133: fsalh GksGEDGSiQGLFElsGIpFVgCdIqSSaICMDK sltyi VANC_ENTGA : 97- 130: fpvlh GkyGEDGCiQGLLElmNLpYVgChVaASaLCMNK wllhq C 3: 75.8241 8( 8) G-E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K Occurences: 8(8) DDLA_ECOLI : 111- 141: vhgtl GEDGSlQGMLRvaNLpFVgSdVlASaACMDK dvtkr DDLA_SALTY : 110- 140: vhgtl GEDGSlQGMLRvaNLpFVgSdVlSSaACMDK dvakr DDLB_ECOLI : 66- 96: lhgrg GEDGTlQGMLElmGLpYTgSgVmASaLSMDK lrskl DDL_ANACE : 77- 107: lhggq GEDGCaSGLLDilGLaYThSrVaASsVGMDK vltkh DDL_HAEIN : 70- 100: lhgrg GEDGTmQGLLEqiGLpYTgCgVmASaLTMDK mrtkm DDL_THEMA : 76- 106: lhgtf GEDGTlQAILDflGIrYTgSdAfSSmICFDK lvtyr VANA_ENTFC : 103- 133: lhgks GEDGSiQGLFElsGIpFVgCdIqSSaICMDK sltyi VANC_ENTGA : 100- 130: lhgky GEDGCiQGLLElmNLpYVgChVaASaLCMNK wllhq D 4: 71.6541 8( 8) E-D-G-[CST]-x-[QS]-[AG]-[ILM]-[FL]-[DER]-x(2)-[GN]-[IL]-x-[FY]-[TV]-x-[CS]-x-[AIV]-x-[AS]-S-x-[AILV]-[CGST]-[FM]-[DN]-K Occurences: 8(8) DDLA_ECOLI : 112- 141: hgtlg EDGSlQGMLRvaNLpFVgSdVlASaACMDK dvtkr DDLA_SALTY : 111- 140: hgtlg EDGSlQGMLRvaNLpFVgSdVlSSaACMDK dvakr DDLB_ECOLI : 67- 96: hgrgg EDGTlQGMLElmGLpYTgSgVmASaLSMDK lrskl DDL_ANACE : 78- 107: hggqg EDGCaSGLLDilGLaYThSrVaASsVGMDK vltkh DDL_HAEIN : 71- 100: hgrgg EDGTmQGLLEqiGLpYTgCgVmASaLTMDK mrtkm DDL_THEMA : 77- 106: hgtfg EDGTlQAILDflGIrYTgSdAfSSmICFDK lvtyr VANA_ENTFC : 104- 133: hgksg EDGSiQGLFElsGIpFVgCdIqSSaICMDK sltyi VANC_ENTGA : 101- 130: hgkyg EDGCiQGLLElmNLpYVgChVaASaLCMNK wllhq E 5: 45.3914 8( 8) G-G-x-S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] Occurences: 8(8) DDLA_ECOLI : 11- 31: vgivf GGkSaEhEVSLqSAknIvdAI dksrf DDLA_SALTY : 10- 30: vgivf GGkSaEhEVSLqSAknIvdAI dktrf DDLB_ECOLI : 9- 29: iavll GGtSaErEVSLnSGaaVlaGL reggi DDL_ANACE : 20- 40: iavlc GGsSpErEVSLaGGkrIadAL grlgh DDL_HAEIN : 13- 33: iavll GGtSaErEVSLnSGkaVleAL lkqgy DDL_THEMA : 18- 38: vallm GGvSrErEISLrSGerVkkAL eklgy VANA_ENTFC : 11- 31: vailf GGcSeEhDVSVkSAieIaaNI nkeky VANC_ENTGA : 9- 29: iavlf GGnSpEySVSLtSAasViqAI dplky F 6: 44.3914 8( 8) V-x(3,4)-G-x(1,2)-S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] Occurences: 8(8) DDLA_ECOLI : 6- 31: meklr VgivfGgkSaEhEVSLqSAknIvdAI dksrf DDLA_SALTY : 5- 30: aklr VgivfGgkSaEhEVSLqSAknIvdAI dktrf DDLB_ECOLI : 6- 29: tdkia Vllg-Gt-SaErEVSLnSGaaVlaGL reggi DDL_ANACE : 17- 40: vlsia Vlcg-Gs-SpErEVSLaGGkrIadAL grlgh DDL_HAEIN : 10- 33: qekia Vllg-Gt-SaErEVSLnSGkaVleAL lkqgy DDL_THEMA : 13- 38: gktvr VallmGgvSrErEISLrSGerVkkAL eklgy VANA_ENTFC : 6- 31: mnrik VailfGgcSeEhDVSVkSAieIaaNI nkeky VANC_ENTGA : 6- 29: mkkia Vlfg-Gn-SpEySVSLtSAasViqAI dplky G 7: 41.2213 8( 8) G-x-S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] Occurences: 8(8) DDLA_ECOLI : 12- 31: givfg GkSaEhEVSLqSAknIvdAI dksrf DDLA_SALTY : 11- 30: givfg GkSaEhEVSLqSAknIvdAI dktrf DDLB_ECOLI : 10- 29: avllg GtSaErEVSLnSGaaVlaGL reggi DDL_ANACE : 21- 40: avlcg GsSpErEVSLaGGkrIadAL grlgh DDL_HAEIN : 14- 33: avllg GtSaErEVSLnSGkaVleAL lkqgy DDL_THEMA : 19- 38: allmg GvSrErEISLrSGerVkkAL eklgy VANA_ENTFC : 12- 31: ailfg GcSeEhDVSVkSAieIaaNI nkeky VANC_ENTGA : 10- 29: avlfg GnSpEySVSLtSAasViqAI dplky H 8: 37.0513 8( 8) S-x-E-x-[DES]-[IV]-S-[LV]-x-[GS]-[AG]-x(2)-[IV]-x(2)-[AGN]-[IL] Occurences: 8(8) DDLA_ECOLI : 14- 31: vfggk SaEhEVSLqSAknIvdAI dksrf DDLA_SALTY : 13- 30: vfggk SaEhEVSLqSAknIvdAI dktrf DDLB_ECOLI : 12- 29: llggt SaErEVSLnSGaaVlaGL reggi DDL_ANACE : 23- 40: lcggs SpErEVSLaGGkrIadAL grlgh DDL_HAEIN : 16- 33: llggt SaErEVSLnSGkaVleAL lkqgy DDL_THEMA : 21- 38: lmggv SrErEISLrSGerVkkAL eklgy VANA_ENTFC : 14- 31: lfggc SeEhDVSVkSAieIaaNI nkeky VANC_ENTGA : 12- 29: lfggn SpEySVSLtSAasViqAI dplky I 9: 26.2921 8( 8) A-x-L-x(2,3)-G-x-[DS]-x(3)-[DES]-[AIV]-[AS]-x(2)-[DGS] Occurences: 8(8) DDLA_ECOLI : 123- 140: gmlrv AnLpfvGsDvlaSAAcmD kdvtk DDLA_SALTY : 122- 139: gmlrv AnLpfvGsDvlsSAAcmD kdvak DDLB_ECOLI : 5- 21: tdki AvLlg-GtSaerEVSlnS gaavl DDL_ANACE : 16- 32: dvlsi AvLcg-GsSperEVSlaG gkria DDL_HAEIN : 9- 25: kqeki AvLlg-GtSaerEVSlnS gkavl DDL_THEMA : 14- 30: ktvrv AlLmg-GvSrerEISlrS gervk VANA_ENTFC : 7- 23: nrikv AiLfg-GcSeehDVSvkS aieia VANC_ENTGA : 5- 21: mkki AvLfg-GnSpeySVSltS aasvi J 10: 23.2853 8( 8) S-x(2)-[CG]-[FILMV]-x-K-x(0,1)-V-x(4,5)-L-x(3)-[GILV] Occurences: 8(8) DDLA_ECOLI : 135- 152: sdvla SaaCMdKdVtkrl-LrdaG lniap DDLA_SALTY : 134- 151: sdvls SaaCMdKdVakrl-LrdaG lniap DDLB_ECOLI : 149- 166: psreg SsvGMsKvVaena-LqdaL rlafq DDLB_ECOLI : 149- 166: psreg SsvGMsK-VvaenaLqdaL rlafq DDL_ANACE : 101- 118: srvaa SsvGMdK-VltkhvLkslG idfpe DDL_HAEIN : 150- 167: psleg SsvGLtK-VkaveeLksaV eyalk DDL_THEMA : 100- 117: sdafs SmiCFdKlVtyrf-LkgtV eipdf VANA_ENTFC : 177- 194: parsg SsfGVkK-VnsadeLdyaI esarq VANC_ENTGA : 180- 197: pneag SskGItK-VtdktaLqsaL ttafa K 11: 20.9205 8( 8) L-x(0,1)-G-x(2)-G-x(2,3)-G-x(2)-[QRS]-[AGV] Occurences: 8(8) DDLA_ECOLI : 110- 122: ivhgt L-GedGslqGmlRV anlpf DDLA_SALTY : 109- 121: ivhgt L-GedGslqGmlRV anlpf DDLB_ECOLI : 61- 73: kvfia LhGrgGed-GtlQG mlelm DDL_ANACE : 72- 84: lvyna LhGgqGed-GcaSG lldil DDL_HAEIN : 65- 77: rafni LhGrgGed-GtmQG lleqi DDL_THEMA : 71- 83: vvfnv LhGtfGed-GtlQA ildfl VANA_ENTFC : 98- 110: vafsa LhGksGed-GsiQG lfels VANC_ENTGA : 95- 107: vlfpv LhGkyGed-GciQG llelm L 12: 19.7029 8( 8) D-x(5)-L-x(3,4)-G-x-[DGNP]-x-[ACPTV]-[AGILPV]-x(4)-[ADEST] Occurences: 8(8) DDLA_ECOLI : 142- 162: acmdk DvtkrlLrda-GlNiAPfitlT ranrh DDLA_SALTY : 141- 161: acmdk DvakrlLrda-GlNiAPfitlT rtnrh DDLB_ECOLI : 95- 115: salsm DklrskLlwq-GaGlPVapwvA ltrae DDL_ANACE : 66- 87: lamap DlvynaLhggqGeDgCAsgllD ilgla DDL_HAEIN : 72- 93: grgge DgtmqgLleqiGlPyTGcgvmA saltm DDL_THEMA : 65- 86: qlksf DvvfnvLhgtfGeDgTLqailD flgir VANA_ENTFC : 105- 126: gksge DgsiqgLfelsGiPfVGcdiqS saicm VANC_ENTGA : 89- 110: krivp DvlfpvLhgkyGeDgCIqgllE lmnlp M 13: 18.6257 8( 8) L-x(3)-G-x(1,2)-R-x(3)-[FIMV]-x(3)-[DENQRS]-[EGN] Occurences: 8(8) DDLA_ECOLI : 293- 309: qayqt LgcaGmaRvdvFltpEN evvin DDLA_SALTY : 292- 308: qayqt LgcaGmaRvdvFltaDN evvin DDLB_ECOLI : 247- 263: kawtt LgckGwgRidvMldsDG qfyll DDL_ANACE : 40- 55: riada LgrlGh-RaavVdlnRE sahql DDL_HAEIN : 53- 69: ynvan LkkdGfnRafnIlhgRG gedgt DDL_THEMA : 15- 31: tvrva LlmgGvsRereIslrSG ervkk VANA_ENTFC : 283- 299: kiyka LgcrGlaRvdmFlqdNG rivln VANC_ENTGA : 281- 297: llyrn LgltGlaRidfFvtnQG aiyln N 14: 17.3100 8( 8) S-x-G-x(1,2)-K-x(0,1)-V-x-[ADNSTV] Occurences: 8(8) DDLA_ECOLI : 192- 200: anqgs SvGvsK-VtS eeqya DDLA_SALTY : 191- 199: anqgs SvGvsK-VaN eaqyq DDLB_ECOLI : 150- 158: sregs SvGmsK-VvA enalq DDL_ANACE : 102- 110: rvaas SvGmdK-VlT khvlk DDL_HAEIN : 151- 159: slegs SvGltK-VkA veelk DDL_THEMA : 5- 13: meky SwGg-KtVrV allmg VANA_ENTFC : 178- 186: arsgs SfGvkK-VnS adeld VANA_ENTFC : 178- 186: arsgs SfGv-KkVnS adeld VANC_ENTGA : 181- 189: neags SkGitK-VtD ktalq O 15: 16.8959 8( 8) V-L-x(0,1)-G-[GNT]-x-[AGNS] Occurences: 8(8) DDLA_ECOLI : 233- 238: eieca VL-GNdN pqast DDLA_SALTY : 232- 237: eieca VL-GNdN pqast DDLB_ECOLI : 6- 12: tdkia VLlGGtS aerev DDL_ANACE : 17- 23: vlsia VLcGGsS perev DDL_HAEIN : 10- 16: qekia VLlGGtS aerev DDL_THEMA : 70- 76: dvvfn VLhGTfG edgtl VANA_ENTFC : 219- 224: evgca VL-GNsA alvvg VANC_ENTGA : 6- 12: mkkia VLfGGnS peysv P 16: 16.5246 9( 8) V-x(2)-[AGS]-x(2)-G-x(2,3)-G-x(3)-[ACGTV] Occurences: 9(8) DDLA_ECOLI : 184- 198: glplf VkpAnqGssvGvskV tseeq DDLA_SALTY : 183- 197: glplf VkpAnqGssvGvskV aneaq DDLB_ECOLI : 57- 70: mgfqk VfiAlhGrg-GedgT lqgml DDLB_ECOLI : 142- 156: glpvi VkpSreGssvGmskV vaena DDL_ANACE : 68- 81: mapdl VynAlhGgq-GedgC asgll DDL_HAEIN : 143- 157: glplm VkpSleGssvGltkV kavee DDL_THEMA : 70- 83: dvvfn VlhGtfGed-GtlqA ildfl VANA_ENTFC : 170- 184: typvf VkpArsGssfGvkkV nsade VANC_ENTGA : 94- 107: dvlfp VlhGkyGed-GciqG llelm Q 17: 14.6584 8( 8) L-G-x(4,5)-V-x-[DGP] Occurences: 8(8) DDLA_ECOLI : 178- 186: evesk LGlplf-VkP anqgs DDLA_SALTY : 177- 185: evesr LGlplf-VkP anqgs DDLB_ECOLI : 136- 144: aeisa LGlpvi-VkP sregs DDL_ANACE : 43- 51: dalgr LGhraa-VvD lnres DDL_HAEIN : 137- 145: avvak LGlplm-VkP slegs DDL_THEMA : 41- 49: kalek LGyeht-VfD vredf VANA_ENTFC : 220- 229: vgcav LGnsaalVvG evdqi VANC_ENTGA : 81- 89: sqgfi LGekri-VpD vlfpv R 18: 12.0102 10( 8) I-x(3,4)-L-G Occurences: 10(8) DDLA_ECOLI : 105- 111: dvifp IvhgtLG edgsl DDLA_ECOLI : 229- 235: ikgre IecavLG ndnpq DDLA_SALTY : 104- 110: dvifp IvhgtLG edgsl DDLA_SALTY : 228- 234: ikgre IecavLG ndnpq DDLB_ECOLI : 4- 9: tdk Iavl-LG gtsae DDL_ANACE : 36- 41: aggkr Iada-LG rlghr DDL_HAEIN : 8- 13: lkqek Iavl-LG gtsae DDL_THEMA : 84- 89: gtlqa Ildf-LG irytg VANA_ENTFC : 279- 284: etakk Iyka-LG crgla VANC_ENTGA : 218- 224: iagie IgcgiLG neqlt S 19: 12.0102 8( 8) V-x(3)-L-x(4,5)-G Occurences: 8(8) DDLA_ECOLI : 143- 152: cmdkd VtkrLlrda-G lniap DDLA_SALTY : 142- 151: cmdkd VakrLlrda-G lniap DDLB_ECOLI : 57- 66: mgfqk VfiaLhgrg-G edgtl DDL_ANACE : 68- 77: mapdl VynaLhggq-G edgca DDL_HAEIN : 143- 153: glplm VkpsLegssvG ltkvk DDL_THEMA : 67- 76: ksfdv VfnvLhgtf-G edgtl VANA_ENTFC : 260- 270: navit VpadLsaeerG riqet VANC_ENTGA : 87- 97: gekri VpdvLfpvlhG kyged T 20: 12.0102 13( 8) L-x(5)-V-x(2,3)-L Occurences: 13(8) DDLA_ECOLI : 116- 125: gedgs LqgmlrVan-L pfvgs DDLA_SALTY : 115- 124: gedgs LqgmlrVan-L pfvgs DDLB_ECOLI : 19- 29: erevs LnsgaaVlagL reggi DDL_ANACE : 43- 52: dalgr LghraaVvd-L nresa DDL_HAEIN : 23- 33: erevs LnsgkaVleaL lkqgy DDL_HAEIN : 128- 137: etfse LdpqavVak-L glplm DDL_HAEIN : 137- 147: avvak LglplmVkpsL egssv DDL_HAEIN : 154- 163: gssvg LtkvkaVee-L ksave DDL_THEMA : 28- 38: ereis LrsgerVkkaL eklgy DDL_THEMA : 61- 71: kkvdq LksfdvVfnvL hgtfg VANA_ENTFC : 332- 341: ialpe LidrliVla-L kg VANC_ENTGA : 81- 91: sqgfi LgekriVpdvL fpvlh VANC_ENTGA : 325- 334: maevg LsyeilVeq-L ialae Number of patterns evaluated by Pratt:2250 Total running time: 1 seconds