------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 73 sequences from file C_TYPE_LECTIN

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 73
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols               28
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename       C_TYPE_LECTIN.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
     ANP_HEMAM    163
     ANP_OSMMO    175
    BOTA_BOTJA    133
    BOTB_BOTJA    125
    BOTR_BOTJA     25
    CL43_BOVIN    301
    CONG_BOVIN    371
    EMB1_CAVPO    233
    EMB2_CAVPO    234
    EMBP_HUMAN    222
    FCE2_HUMAN    321
    FCE2_MOUSE    331
     IXA_TRIFL    129
     IXB_TRIFL    123
      KUCR_RAT    550
    LEC2_MEGRO    173
    LEC3_MEGRO    138
    LECA_PLEWA    172
    LECA_SARPE    283
    LECC_POLMI    125
    LECE_ANTCR    147
    LECG_CROAT    135
    LECH_CHICK    207
    LECH_HUMAN    290
    LECH_MOUSE    283
      LECH_RAT    283
    LECI_HUMAN    311
    LECI_MOUSE    301
      LECI_RAT    301
    LEM1_HUMAN    372
    LEM1_MOUSE    372
      LEM1_RAT    372
    LEM2_CANFA    611
    LEM2_HUMAN    610
    LEM2_MOUSE    612
    LEM2_RABIT    551
    LEM3_BOVIN    646
    LEM3_HUMAN    830
    LEM3_MOUSE    768
    LIT1_MOUSE    165
    LIT2_MOUSE    173
    LITH_BOVIN    175
    LITH_HUMAN    166
      LITH_RAT    165
    LPSB_PERAM    256
    MABA_MOUSE    239
      MABA_RAT    238
    MABC_HUMAN    248
    MABC_MOUSE    244
      MABC_RAT    244
    MANR_HUMAN   1456
    PAP1_HUMAN    175
    PAP1_MOUSE    175
      PAP1_RAT    175
      PAP2_RAT    174
    PGCA_BOVIN    719
    PGCA_CHICK    379
    PGCA_HUMAN   2415
      PGCA_RAT   2124
    PGCS_HUMAN   2409
    PLIA_TRIFL    147
    PLIB_TRIFL    147
    PSPA_CANFA    248
    PSPA_HUMAN    248
    PSPA_MOUSE    248
    PSPA_RABIT    247
      PSPA_RAT    248
    PSPD_BOVIN    369
    PSPD_HUMAN    375
      PSPD_RAT    374
    TETN_CARSP    166
    TETN_HUMAN    202
    TETN_MOUSE    202

Pratt run started at Thu Feb  6 19:15:26 1997

No patterns found