------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file CYTO_HEME_LYASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CYTO_HEME_LYASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CCHL_NEUCR 346 CCHL_YEAST 269 CYT2_YEAST 224 Pratt run started at Thu Feb 6 19:15:24 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 61.0508 3( 3) L-x(3)-R-x(2)-S-x-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(3)-K 2: 56.8807 3( 3) R-x(2)-S-x-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(3)-K 3: 52.7107 3( 3) S-x-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(3)-K 4: 48.5406 3( 3) I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(3)-K 5: 40.7005 3( 3) D-x-N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(3)-K 6: 40.2005 3( 3) D-x-N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(2,3)-K 7: 40.2005 3( 3) D-x(0,1)-N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(3)-K 8: 39.7005 4( 3) D-x(1,3)-V-x(1,3)-V-x(2)-H-N-x(2)-N-E-x(2)-W-x(5)-W-E 9: 36.0305 3( 3) N-x(0,2)-W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(2,3)-K 10: 33.3604 3( 3) P-F-D-R-H-D-W-x(3)-R 11: 33.3604 3( 3) V-x(2)-H-N-x(2)-N-E-x(2)-W-x(5)-W-E 12: 32.8604 4( 3) V-x(2,3)-H-N-x(2)-N-E-x(2)-W-x(5)-W-E 13: 32.8604 3( 3) W-x-Y-P-S-x(2)-Q-x-Y-x-A-x(2,3)-K 14: 29.1904 3( 3) K-x-V-x-Y-V-x-D-F-Y 15: 29.1904 3( 3) F-D-R-H-D-W-x(3)-R 16: 29.1904 3( 3) H-N-x(2)-N-E-x(2)-W-x(5)-W-E 17: 28.6904 3( 3) Y-P-S-x(2)-Q-x-Y-x-A-x(2,3)-K 18: 25.0203 3( 3) V-x-Y-V-x-D-F-Y 19: 25.0203 3( 3) D-R-H-D-W-x(3)-R 20: 25.0203 3( 3) N-x(2)-N-E-x(2)-W-x(5)-W-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 114.7174 3( 3) L-[PS]-x-[DES]-R-[DET]-[IPV]-S-[ST]-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV] B 2: 107.3726 3( 3) R-[DET]-[IPV]-S-[ST]-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV] C 3: 97.9892 3( 3) S-[ST]-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV] D 4: 93.2353 3( 3) I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] E 5: 90.3997 3( 3) V-x-[LV]-H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R F 6: 89.3523 4( 3) D-x(1,3)-V-x(1,3)-V-x-[LV]-H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM] G 7: 86.7159 4( 3) V-x(2,3)-H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R H 8: 85.3952 3( 3) D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] I 9: 84.8952 3( 3) D-x(0,1)-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] J 10: 83.0459 3( 3) H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R K 11: 82.7429 3( 3) K-[ET]-V-[DR]-Y-V-[IL]-D-F-Y-[GS]-[AGT]-[DP]-x-[DEN]-[DEP]-[ANT]-[GN]-x-[PQ]-x(3)-[LV]-x(3)-[DP]-[AV]-x-[DPT]-x(2)-[DGN]-[ANS]-x-[EK] L 12: 78.8758 3( 3) N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R M 13: 75.3978 3( 3) V-[DR]-Y-V-[IL]-D-F-Y-[GS]-[AGT]-[DP]-x-[DEN]-[DEP]-[ANT]-[GN]-x-[PQ]-x(3)-[LV]-x(3)-[DP]-[AV]-x-[DPT]-x(2)-[DGN]-[ANS]-x-[EK] N 14: 75.2429 3( 3) D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] O 15: 71.0728 3( 3) N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] P 16: 67.9028 3( 3) W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Q 17: 67.3327 3( 3) P-F-D-R-H-D-W-x-[IV]-x-R-[CDG]-[EG]-x(3)-[DEK]-x(2)-[IPV]-x(4)-[DET]-x(3)-[ADV]-[ALP]-[DNP]-x(2)-[GQT]-[GQ]-[EP] R 18: 63.7327 3( 3) Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] S 19: 63.1627 3( 3) F-D-R-H-D-W-x-[IV]-x-R-[CDG]-[EG]-x(3)-[DEK]-x(2)-[IPV]-x(4)-[DET]-x(3)-[ADV]-[ALP]-[DNP]-x(2)-[GQT]-[GQ]-[EP] T 20: 58.9926 3( 3) D-R-H-D-W-x-[IV]-x-R-[CDG]-[EG]-x(3)-[DEK]-x(2)-[IPV]-x(4)-[DET]-x(3)-[ADV]-[ALP]-[DNP]-x(2)-[GQT]-[GQ]-[EP] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 114.7174 3( 3) L-[PS]-x-[DES]-R-[DET]-[IPV]-S-[ST]-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV] Occurences: 3(3) CCHL_NEUCR : 130- 177: nqaia LPtERDPSSIPkgtgDgN--WeYPSPqQMYNALLRKGytDTDiTaveSmV avhnf CCHL_YEAST : 73- 121: gqkmd LPvDRTISSIPksp-DsNefWeYPSPqQMYNAMVRKGkiGGSgEvaeDaV esmvq CYT2_YEAST : 60- 107: httvd LSqSREVSTIPrtnsDrN--WiYPSEkQFYEAMMKKNwdPNSdDmkvVvP lhnsi B 2: 107.3726 3( 3) R-[DET]-[IPV]-S-[ST]-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV] Occurences: 3(3) CCHL_NEUCR : 134- 181: alpte RDPSSIPkgtgDgN--WeYPSPqQMYNALLRKGytDTDiTaveSmVavhN flneg CCHL_YEAST : 77- 125: dlpvd RTISSIPksp-DsNefWeYPSPqQMYNAMVRKGkiGGSgEvaeDaVesmV qvhnf CYT2_YEAST : 64- 111: dlsqs REVSTIPrtnsDrN--WiYPSEkQFYEAMMKKNwdPNSdDmkvVvPlhnS inerv C 3: 97.9892 3( 3) S-[ST]-I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV] Occurences: 3(3) CCHL_NEUCR : 137- 181: terdp SSIPkgtgDgN--WeYPSPqQMYNALLRKGytDTDiTaveSmVavhN flneg CCHL_YEAST : 80- 125: vdrti SSIPksp-DsNefWeYPSPqQMYNAMVRKGkiGGSgEvaeDaVesmV qvhnf CYT2_YEAST : 67- 111: qsrev STIPrtnsDrN--WiYPSEkQFYEAMMKKNwdPNSdDmkvVvPlhnS inerv D 4: 93.2353 3( 3) I-P-x(3,4)-D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Occurences: 3(3) CCHL_NEUCR : 139- 185: rdpss IPkgtgDgN--WeYPSPqQMYNALLRKGytDTDiTaveSmVavhNflnE gawne CCHL_YEAST : 82- 129: rtiss IPksp-DsNefWeYPSPqQMYNAMVRKGkiGGSgEvaeDaVesmVqvhN flneg CYT2_YEAST : 69- 115: revst IPrtnsDrN--WiYPSEkQFYEAMMKKNwdPNSdDmkvVvPlhnSineR vwnyi E 5: 90.3997 3( 3) V-x-[LV]-H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R Occurences: 3(3) CCHL_NEUCR : 177- 221: avesm VaVHNfLNEgAWNeIvEWERrfGkGlmrGwEImkrgEENapMmLR rleaq CCHL_YEAST : 125- 169: avesm VqVHNfLNEgCWQeVlEWEKphTdEshvQpKLlkfmGKPgvLsPR arwmh CYT2_YEAST : 106- 150: dmkvv VpLHNsINErVWNyIkSWEDkqGgEacgGiKLtnfkGDSkkLtPR awfrs F 6: 89.3523 4( 3) D-x(1,3)-V-x(1,3)-V-x-[LV]-H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM] Occurences: 4(3) CCHL_NEUCR : 169- 218: gytdt DitaVesmVaVHNfLNEgAWNeIvEWERrfGkGlmrGwEImkrgEENapM mlrrl CCHL_YEAST : 119- 166: gevae Da--VesmVqVHNfLNEgCWQeVlEWEKphTdEshvQpKLlkfmGKPgvL sprar CYT2_YEAST : 100- 147: wdpns DdmkVv--VpLHNsINErVWNyIkSWEDkqGgEacgGiKLtnfkGDSkkL tpraw CYT2_YEAST : 101- 147: dpnsd Dmk-Vv--VpLHNsINErVWNyIkSWEDkqGgEacgGiKLtnfkGDSkkL tpraw G 7: 86.7159 4( 3) V-x(2,3)-H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R Occurences: 4(3) CCHL_NEUCR : 177- 221: avesm Vav-HNfLNEgAWNeIvEWERrfGkGlmrGwEImkrgEENapMmLR rleaq CCHL_YEAST : 125- 169: avesm Vqv-HNfLNEgCWQeVlEWEKphTdEshvQpKLlkfmGKPgvLsPR arwmh CYT2_YEAST : 105- 150: ddmkv VvplHNsINErVWNyIkSWEDkqGgEacgGiKLtnfkGDSkkLtPR awfrs CYT2_YEAST : 106- 150: dmkvv Vpl-HNsINErVWNyIkSWEDkqGgEacgGiKLtnfkGDSkkLtPR awfrs H 8: 85.3952 3( 3) D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Occurences: 3(3) CCHL_NEUCR : 145- 185: pkgtg DgN--WeYPSPqQMYNALLRKGytDTDiTaveSmVavhNflnE gawne CCHL_YEAST : 87- 129: ipksp DsNefWeYPSPqQMYNAMVRKGkiGGSgEvaeDaVesmVqvhN flneg CYT2_YEAST : 75- 115: prtns DrN--WiYPSEkQFYEAMMKKNwdPNSdDmkvVvPlhnSineR vwnyi I 9: 84.8952 3( 3) D-x(0,1)-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-[LM]-[LMV]-[KR]-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Occurences: 3(3) CCHL_NEUCR : 145- 185: pkgtg DgN--WeYPSPqQMYNALLRKGytDTDiTaveSmVavhNflnE gawne CCHL_YEAST : 87- 129: ipksp DsNefWeYPSPqQMYNAMVRKGkiGGSgEvaeDaVesmVqvhN flneg CYT2_YEAST : 75- 115: prtns DrN--WiYPSEkQFYEAMMKKNwdPNSdDmkvVvPlhnSineR vwnyi J 10: 83.0459 3( 3) H-N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R Occurences: 3(3) CCHL_NEUCR : 180- 221: smvav HNfLNEgAWNeIvEWERrfGkGlmrGwEImkrgEENapMmLR rleaq CCHL_YEAST : 128- 169: smvqv HNfLNEgCWQeVlEWEKphTdEshvQpKLlkfmGKPgvLsPR arwmh CYT2_YEAST : 109- 150: vvvpl HNsINErVWNyIkSWEDkqGgEacgGiKLtnfkGDSkkLtPR awfrs K 11: 82.7429 3( 3) K-[ET]-V-[DR]-Y-V-[IL]-D-F-Y-[GS]-[AGT]-[DP]-x-[DEN]-[DEP]-[ANT]-[GN]-x-[PQ]-x(3)-[LV]-x(3)-[DP]-[AV]-x-[DPT]-x(2)-[DGN]-[ANS]-x-[EK] Occurences: 3(3) CCHL_NEUCR : 285- 321: engqk KEVRYVIDFYSAPpEPTGePvfyLdvrPAvTvtGAcE rllrw CCHL_YEAST : 212- 248: qpptf KEVRYVLDFYGGPdDENGmPtfhVdvrPAlDslDNaK drmtr CYT2_YEAST : 176- 212: idrcg KTVDYVIDFYSTDlNDANsQqqpLiylDVrPklNSfE gfrlr L 12: 78.8758 3( 3) N-x-[IL]-N-E-x-[ACV]-W-[NQ]-x-[IV]-x-[ES]-W-E-[DKR]-x(2)-[GT]-x-[EG]-x(3)-[GQ]-x-[EK]-[IL]-x(4)-[EG]-[DEK]-[NPS]-x(2)-[LM]-x-[LP]-R Occurences: 3(3) CCHL_NEUCR : 181- 221: mvavh NfLNEgAWNeIvEWERrfGkGlmrGwEImkrgEENapMmLR rleaq CCHL_YEAST : 129- 169: mvqvh NfLNEgCWQeVlEWEKphTdEshvQpKLlkfmGKPgvLsPR arwmh CYT2_YEAST : 110- 150: vvplh NsINErVWNyIkSWEDkqGgEacgGiKLtnfkGDSkkLtPR awfrs M 13: 75.3978 3( 3) V-[DR]-Y-V-[IL]-D-F-Y-[GS]-[AGT]-[DP]-x-[DEN]-[DEP]-[ANT]-[GN]-x-[PQ]-x(3)-[LV]-x(3)-[DP]-[AV]-x-[DPT]-x(2)-[DGN]-[ANS]-x-[EK] Occurences: 3(3) CCHL_NEUCR : 287- 321: gqkke VRYVIDFYSAPpEPTGePvfyLdvrPAvTvtGAcE rllrw CCHL_YEAST : 214- 248: ptfke VRYVLDFYGGPdDENGmPtfhVdvrPAlDslDNaK drmtr CYT2_YEAST : 178- 212: rcgkt VDYVIDFYSTDlNDANsQqqpLiylDVrPklNSfE gfrlr N 14: 75.2429 3( 3) D-x-N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Occurences: 3(3) CCHL_NEUCR : 145- 185: pkgtg DgN--WeYPSPqQMYNAllrKGytDTDiTaveSmVavhNflnE gawne CCHL_YEAST : 87- 129: ipksp DsNefWeYPSPqQMYNAmvrKGkiGGSgEvaeDaVesmVqvhN flneg CYT2_YEAST : 75- 115: prtns DrN--WiYPSEkQFYEAmmkKNwdPNSdDmkvVvPlhnSineR vwnyi O 15: 71.0728 3( 3) N-x(0,2)-W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Occurences: 3(3) CCHL_NEUCR : 147- 185: gtgdg N--WeYPSPqQMYNAllrKGytDTDiTaveSmVavhNflnE gawne CCHL_YEAST : 89- 129: kspds NefWeYPSPqQMYNAmvrKGkiGGSgEvaeDaVesmVqvhN flneg CYT2_YEAST : 77- 115: tnsdr N--WiYPSEkQFYEAmmkKNwdPNSdDmkvVvPlhnSineR vwnyi P 16: 67.9028 3( 3) W-x-Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Occurences: 3(3) CCHL_NEUCR : 148- 185: tgdgn WeYPSPqQMYNAllrKGytDTDiTaveSmVavhNflnE gawne CCHL_YEAST : 92- 129: dsnef WeYPSPqQMYNAmvrKGkiGGSgEvaeDaVesmVqvhN flneg CYT2_YEAST : 78- 115: nsdrn WiYPSEkQFYEAmmkKNwdPNSdDmkvVvPlhnSineR vwnyi Q 17: 67.3327 3( 3) P-F-D-R-H-D-W-x-[IV]-x-R-[CDG]-[EG]-x(3)-[DEK]-x(2)-[IPV]-x(4)-[DET]-x(3)-[ADV]-[ALP]-[DNP]-x(2)-[GQT]-[GQ]-[EP] Occurences: 3(3) CCHL_NEUCR : 268- 303: yatep PFDRHDWyVsRDEngqKkeVryviDfysAPPepTGE pvfyl CCHL_YEAST : 189- 224: fsqel PFDRHDWiVlRGErkaEqqPptfkEvryVLDfyGGP ddeng CYT2_YEAST : 163- 198: lhlak PFDRHDWqIdRCGktvDyvIdfysTdlnDANsqQQP liyld R 18: 63.7327 3( 3) Y-P-S-[EP]-x-Q-[FM]-Y-[EN]-A-x(2,3)-K-[GN]-x(2)-[DGP]-[GNT]-[DS]-x-[DET]-x(3)-[DSV]-x-[PV]-x(3)-[NSV]-x(3)-[ENR] Occurences: 3(3) CCHL_NEUCR : 150- 185: dgnwe YPSPqQMYNAllrKGytDTDiTaveSmVavhNflnE gawne CCHL_YEAST : 94- 129: nefwe YPSPqQMYNAmvrKGkiGGSgEvaeDaVesmVqvhN flneg CYT2_YEAST : 80- 115: drnwi YPSEkQFYEAmmkKNwdPNSdDmkvVvPlhnSineR vwnyi S 19: 63.1627 3( 3) F-D-R-H-D-W-x-[IV]-x-R-[CDG]-[EG]-x(3)-[DEK]-x(2)-[IPV]-x(4)-[DET]-x(3)-[ADV]-[ALP]-[DNP]-x(2)-[GQT]-[GQ]-[EP] Occurences: 3(3) CCHL_NEUCR : 269- 303: atepp FDRHDWyVsRDEngqKkeVryviDfysAPPepTGE pvfyl CCHL_YEAST : 190- 224: sqelp FDRHDWiVlRGErkaEqqPptfkEvryVLDfyGGP ddeng CYT2_YEAST : 164- 198: hlakp FDRHDWqIdRCGktvDyvIdfysTdlnDANsqQQP liyld T 20: 58.9926 3( 3) D-R-H-D-W-x-[IV]-x-R-[CDG]-[EG]-x(3)-[DEK]-x(2)-[IPV]-x(4)-[DET]-x(3)-[ADV]-[ALP]-[DNP]-x(2)-[GQT]-[GQ]-[EP] Occurences: 3(3) CCHL_NEUCR : 270- 303: teppf DRHDWyVsRDEngqKkeVryviDfysAPPepTGE pvfyl CCHL_YEAST : 191- 224: qelpf DRHDWiVlRGErkaEqqPptfkEvryVLDfyGGP ddeng CYT2_YEAST : 165- 198: lakpf DRHDWqIdRCGktvDyvIdfysTdlnDANsqQQP liyld Number of patterns evaluated by Pratt:6353 Total running time: 1 seconds