------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file CYTOSOL_AP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CYTOSOL_AP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AMPA_ECOLI 503 AMPA_HAEIN 491 AMPL_ARATH 520 AMPL_BOVIN 478 AMPL_HUMAN 22 AMPL_PIG 36 AMPL_RICPR 500 AMPL_SOLTU 554 YA55_SCHPO 513 YOJ6_CAEEL 491 Pratt run started at Thu Feb 6 19:15:21 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 12( 10) K-G-x(3,5)-G-x(3,4)-K 2: 15.1802 11( 10) T-x(1,3)-G-x(0,1)-L-x-L 3: 12.0102 18( 10) L-V-x(1,2)-G 4: 12.0102 14( 10) G-x(0,1)-L-x-L 5: 11.5102 11( 10) I-x(3,4)-K-x(2,3)-D 6: 11.5102 11( 10) G-x(2)-S-x(0,2)-K 7: 11.5102 13( 10) G-x(3,4)-E-x(3,4)-D 8: 11.5102 15( 10) L-x(5)-E-x(0,2)-K 9: 11.0102 15( 10) I-x(2,4)-K-x(2,3)-D 10: 11.0102 14( 10) I-x(4,5)-K-x(1,3)-D 11: 11.0102 18( 10) G-x(0,2)-I-x(2,3)-K 12: 11.0102 16( 10) L-x(0,2)-G-x(3,4)-K 13: 11.0102 21( 10) L-x(0,2)-G-x(2,3)-K 14: 11.0102 27( 10) L-x(3,5)-S-x(0,1)-E 15: 11.0102 23( 10) L-x(2,4)-S-x(0,1)-E 16: 11.0102 10( 10) V-x(0,1)-L-x(3,5)-S 17: 11.0102 13( 10) V-x(0,1)-L-x(1,3)-S 18: 11.0102 17( 10) V-x(1,2)-G-x(2,4)-S 19: 11.0102 17( 10) V-x(1,2)-G-x(2,4)-K 20: 11.0102 15( 10) V-x(1,3)-G-x(2,3)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 30.0681 10( 10) L-V-x(1,2)-G-[ILV]-x(2)-[DK]-[ADEST]-x-[EG]-x-[DNQS]-x(2)-[PQT]-x(2)-[DGNS] B 2: 20.0138 10( 10) K-G-x(3,5)-G-x(3,4)-K-[EPT]-x(2)-[DEGN] C 3: 17.9671 10( 10) G-x(3,4)-E-x(3,4)-D-x-[EP]-[GQ] D 4: 17.8760 11( 10) T-x(1,3)-G-x(0,1)-L-x-L-[ACG] E 5: 15.1543 10( 10) V-x(1,3)-G-x(2,3)-K-x(2)-[ADEGS]-[ADEQ] F 6: 14.7060 11( 10) G-x(0,1)-L-x-L-[ACG] G 7: 14.5707 11( 10) I-x(2,4)-K-x(2,3)-D-x-[AGIPV]-x(4)-[ADGNSV] H 8: 13.6414 15( 10) L-x(0,2)-G-x(2,3)-K-x(4)-[DEK] I 9: 13.4293 11( 10) I-x(3,4)-K-x(2,3)-D-x-[AGIPV] J 10: 13.2533 16( 10) G-x(0,2)-I-x(2,3)-K-x(3)-[DGNP] K 11: 12.9145 14( 10) V-x(1,2)-G-x(2,4)-K-[ADENT] L 12: 12.6594 12( 10) I-x(4,5)-K-x(1,3)-D-x-[AGILPV] M 13: 11.5102 11( 10) G-x(2)-S-x(0,2)-K N 14: 11.5102 15( 10) L-x(5)-E-x(0,2)-K O 15: 11.0102 11( 10) T-x(1,3)-G-x(0,1)-L P 16: 11.0102 16( 10) L-x(0,2)-G-x(3,4)-K Q 17: 11.0102 27( 10) L-x(3,5)-S-x(0,1)-E R 18: 11.0102 23( 10) L-x(2,4)-S-x(0,1)-E S 19: 11.0102 10( 10) V-x(0,1)-L-x(3,5)-S T 20: 11.0102 13( 10) V-x(0,1)-L-x(1,3)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 30.0681 10( 10) L-V-x(1,2)-G-[ILV]-x(2)-[DK]-[ADEST]-x-[EG]-x-[DNQS]-x(2)-[PQT]-x(2)-[DGNS] Occurences: 10(10) AMPA_ECOLI : 267- 286: arpiv LVgkGLtfDSgGiSikPseG mdemk AMPA_HAEIN : 260- 279: akpiv LVgkGLtfDAgGiSlkPaaD mdemk AMPL_ARATH : 285- 304: ktkla LVgkGLtfDSgGyNikTgpG csiel AMPL_BOVIN : 4- 22: tkg LVl-GIysKEkEeDepQftS agenf AMPL_HUMAN : 4- 22: tkg LVl-GIysKEkEdDvpQftS AMPL_PIG : 4- 22: tkg LVl-GIysKEkEdDapQftS agenf AMPL_RICPR : 262- 281: dstla LVgkGVifDTgGiSlkPssN mhlmr AMPL_SOLTU : 320- 339: ktkia LVgkGLtfDSgGyNlkTgaG skiel YA55_SCHPO : 277- 296: dgwlg LVgkGVtfDSgGiSikPsqN mkemr YOJ6_CAEEL : 249- 268: tehia LVgkGVvyDTgGlQikTktG mpnmk B 2: 20.0138 10( 10) K-G-x(3,5)-G-x(3,4)-K-[EPT]-x(2)-[DEGN] Occurences: 10(10) AMPA_ECOLI : 270- 286: ivlvg KGltfdsGgisiKPseG mdemk AMPA_HAEIN : 263- 279: ivlvg KGltfdaGgislKPaaD mdemk AMPL_ARATH : 288- 304: lalvg KGltfdsGgyniKTgpG csiel AMPL_BOVIN : 2- 15: t KGlvl--Giys-KEkeE depqf AMPL_HUMAN : 2- 15: t KGlvl--Giys-KEkeD dvpqf AMPL_PIG : 2- 15: t KGlvl--Giys-KEkeD dapqf AMPL_RICPR : 265- 281: lalvg KGvifdtGgislKPssN mhlmr AMPL_SOLTU : 323- 339: ialvg KGltfdsGgynlKTgaG skiel YA55_SCHPO : 280- 296: lglvg KGvtfdsGgisiKPsqN mkemr YOJ6_CAEEL : 252- 268: ialvg KGvvydtGglqiKTktG mpnmk C 3: 17.9671 10( 10) G-x(3,4)-E-x(3,4)-D-x-[EP]-[GQ] Occurences: 10(10) AMPA_ECOLI : 343- 355: lttms Gqtv-EvlntDaEG rlvlc AMPA_HAEIN : 336- 348: lttmn Gltv-EvlntDaEG rlvlc AMPL_ARATH : 364- 376: itasn Gkti-EvnntDaEG rltla AMPL_BOVIN : 7- 19: kglvl GiyskEkee-DePQ ftsag AMPL_HUMAN : 7- 19: kglvl GiyskEked-DvPQ fts AMPL_PIG : 7- 19: kglvl GiyskEked-DaPQ ftsag AMPL_RICPR : 338- 350: vvtms Gqta-EvlntDaEG rlvla AMPL_SOLTU : 399- 411: vtasn Gkti-EvnntDaEG rltla YA55_SCHPO : 353- 365: ifmrn Glsv-EidntDaEG rlila YOJ6_CAEEL : 325- 337: ikmls Gktv-EinntDaEG rlila D 4: 17.8760 11( 10) T-x(1,3)-G-x(0,1)-L-x-L-[ACG] Occurences: 11(10) AMPA_ECOLI : 351- 360: vevln TdaeGrLvLC dvlty AMPA_HAEIN : 344- 353: vevln TdaeGrLvLC dtlty AMPL_ARATH : 372- 381: ievnn TdaeGrLtLA dalvy AMPL_BOVIN : 1- 7: Tk--G-LvLG iyske AMPL_BOVIN : 331- 340: iqvdn TdaeGrLiLA dalcy AMPL_HUMAN : 1- 7: Tk--G-LvLG iyske AMPL_PIG : 1- 7: Tk--G-LvLG iyske AMPL_RICPR : 346- 355: aevln TdaeGrLvLA dtvwy AMPL_SOLTU : 407- 416: ievnn TdaeGrLtLA daliy YA55_SCHPO : 361- 370: veidn TdaeGrLiLA davhy YOJ6_CAEEL : 333- 342: veinn TdaeGrLiLA dgvfy E 5: 15.1543 10( 10) V-x(1,3)-G-x(2,3)-K-x(2)-[ADEGS]-[ADEQ] Occurences: 10(10) AMPA_ECOLI : 5- 16: mefs Vks-GspeKqrSA civvg AMPA_HAEIN : 293- 302: cgaas Vf--Gtm-KtiAQ lnlpl AMPL_ARATH : 320- 329: ggsaa Vl--Gaa-KaiGE ikppg AMPL_BOVIN : 5- 15: tkgl Vl--GiysKekEE depqf AMPL_HUMAN : 5- 15: tkgl Vl--GiysKekED dvpqf AMPL_PIG : 5- 15: tkgl Vl--GiysKekED dapqf AMPL_RICPR : 77- 88: kylii Vgl-GnveKltEA kieel AMPL_SOLTU : 355- 364: ggaaa Vl--Gaa-KalGE ikprg YA55_SCHPO : 261- 272: prfle VqyiGke-KskDD gwlgl YOJ6_CAEEL : 32- 43: svlkn VtfeGkf-KevAQ kfvtd F 6: 14.7060 11( 10) G-x(0,1)-L-x-L-[ACG] Occurences: 11(10) AMPA_ECOLI : 355- 360: ntdae GrLvLC dvlty AMPA_HAEIN : 348- 353: ntdae GrLvLC dtlty AMPL_ARATH : 376- 381: ntdae GrLtLA dalvy AMPL_BOVIN : 3- 7: tk G-LvLG iyske AMPL_BOVIN : 335- 340: ntdae GrLiLA dalcy AMPL_HUMAN : 3- 7: tk G-LvLG iyske AMPL_PIG : 3- 7: tk G-LvLG iyske AMPL_RICPR : 350- 355: ntdae GrLvLA dtvwy AMPL_SOLTU : 411- 416: ntdae GrLtLA daliy YA55_SCHPO : 365- 370: ntdae GrLiLA davhy YOJ6_CAEEL : 337- 342: ntdae GrLiLA dgvfy G 7: 14.5707 11( 10) I-x(2,4)-K-x(2,3)-D-x-[AGIPV]-x(4)-[ADGNSV] Occurences: 11(10) AMPA_ECOLI : 180- 196: qhgla IaagiKaakDlGnmppN icnaa AMPA_HAEIN : 174- 190: shana IssgiKaarDiAnmppN icnpa AMPL_ARATH : 18- 33: tephk IsftaKei-DvIewkgD ilvvg AMPL_BOVIN : 8- 23: glvlg IyskeKee-DePqftsA genfn AMPL_HUMAN : 8- 22: glvlg Iys--KekeDdVpqftS AMPL_PIG : 8- 23: glvlg IyskeKed-DaPqftsA genfd AMPL_PIG : 8- 22: glvlg Iys--KekeDdApqftS agenf AMPL_RICPR : 452- 468: taahf IkrfiKdgvDwAhldiA gvans AMPL_SOLTU : 53- 68: sdapk IsigaKdt-DvVqwqgD llaig AMPL_SOLTU : 55- 68: apkis Iga--Kdt-DvVqwqgD llaig YA55_SCHPO : 264- 278: levqy Igke-Ksk-DdGwlglV gkgvt YOJ6_CAEEL : 312- 325: nnvsp Ian--Kpd-DiIkmlsG ktvei H 8: 13.6414 15( 10) L-x(0,2)-G-x(2,3)-K-x(4)-[DEK] Occurences: 15(10) AMPA_ECOLI : 74- 85: lseri LliGcg-KerelD erqyk AMPA_ECOLI : 75- 85: seril Li-Gcg-KerelD erqyk AMPA_HAEIN : 73- 85: sakrl LivGcgkKgeltE rqykq AMPL_ARATH : 35- 47: wkgdi LvvGvteKdlakD gnskf AMPL_BOVIN : 4- 16: tkg LvlGiysKekeeD epqft AMPL_BOVIN : 6- 16: tkglv L--GiysKekeeD epqft AMPL_HUMAN : 4- 16: tkg LvlGiysKekedD vpqft AMPL_HUMAN : 6- 16: tkglv L--GiysKekedD vpqft AMPL_PIG : 4- 16: tkg LvlGiysKekedD apqft AMPL_PIG : 6- 16: tkglv L--GiysKekedD apqft AMPL_RICPR : 79- 89: liivg L--GnveKlteaK ieelg AMPL_SOLTU : 334- 346: sggyn LktGagsKielmK ndmgg AMPL_SOLTU : 362- 371: gaaka L--Gei-KprgvE vhfiv YA55_SCHPO : 275- 285: kddgw L--GlvgKgvtfD sggis YOJ6_CAEEL : 409- 420: lfapd LffGdl-KssiaD mknsn I 9: 13.4293 11( 10) I-x(3,4)-K-x(2,3)-D-x-[AGIPV] Occurences: 11(10) AMPA_ECOLI : 180- 191: qhgla IaagiKaakDlG nmppn AMPA_HAEIN : 174- 185: shana IssgiKaarDiA nmppn AMPL_ARATH : 18- 28: tephk IsftaKei-DvI ewkgd AMPL_BOVIN : 8- 18: glvlg IyskeKee-DeP qftsa AMPL_HUMAN : 8- 18: glvlg IyskeKed-DvP qfts AMPL_PIG : 8- 18: glvlg IyskeKed-DaP qftsa AMPL_RICPR : 452- 463: taahf IkrfiKdgvDwA hldia AMPL_SOLTU : 53- 63: sdapk IsigaKdt-DvV qwqgd YA55_SCHPO : 264- 273: levqy Igke-Ksk-DdG wlglv YOJ6_CAEEL : 389- 400: qlene IikagKasgDlV apmlf YOJ6_CAEEL : 390- 400: lenei Ikag-KasgDlV apmlf J 10: 13.2533 16( 10) G-x(0,2)-I-x(2,3)-K-x(3)-[DGNP] Occurences: 16(10) AMPA_ECOLI : 183- 192: laiaa G--IkaaKdlgN mppni AMPA_ECOLI : 277- 286: ltfds Gg-Isi-KpseG mdemk AMPA_ECOLI : 278- 286: tfdsg G--Isi-KpseG mdemk AMPA_HAEIN : 270- 279: ltfda Gg-Isl-KpaaD mdemk AMPA_HAEIN : 271- 279: tfdag G--Isl-KpaaD mdemk AMPL_ARATH : 304- 315: iktgp GcsIelmKfdmG gsaav AMPL_BOVIN : 257- 266: itfds Gg-Isi-KaaaN mdlmr AMPL_BOVIN : 258- 266: tfdsg G--Isi-KaaaN mdlmr AMPL_HUMAN : 7- 15: kglvl G--Iys-KekeD dvpqf AMPL_PIG : 7- 15: kglvl G--Iys-KekeD dapqf AMPL_RICPR : 272- 281: vifdt Gg-Isl-KpssN mhlmr AMPL_RICPR : 273- 281: ifdtg G--Isl-KpssN mhlmr AMPL_SOLTU : 339- 350: lktga GskIelmKndmG gaaav YA55_SCHPO : 287- 296: vtfds Gg-Isi-KpsqN mkemr YA55_SCHPO : 288- 296: tfdsg G--Isi-KpsqN mkemr YOJ6_CAEEL : 260- 270: vydtg GlqIkt-KtgmP nmkrd K 11: 12.9145 14( 10) V-x(1,2)-G-x(2,4)-K-[ADENT] Occurences: 14(10) AMPA_ECOLI : 222- 230: nvitr Vi-GeqqmKE lgmhs AMPA_HAEIN : 293- 299: cgaas Vf-Gtm--KT iaqln AMPL_ARATH : 36- 43: kgdil Vv-Gvte-KD lakdg AMPL_ARATH : 320- 326: ggsaa Vl-Gaa--KA igeik AMPL_BOVIN : 5- 12: tkgl Vl-Giys-KE keede AMPL_BOVIN : 65- 73: dfpsv VvvGlgk-KT agide AMPL_BOVIN : 66- 73: fpsvv Vv-Glgk-KT agide AMPL_HUMAN : 5- 12: tkgl Vl-Giys-KE keddv AMPL_PIG : 5- 12: tkgl Vl-Giys-KE kedda AMPL_RICPR : 218- 226: gvnid Vi-GehdiKN lgmga AMPL_SOLTU : 355- 361: ggaaa Vl-Gaa--KA lgeik YA55_SCHPO : 113- 121: aksia Vd-GmgfpKD aalga YA55_SCHPO : 408- 416: ftgaf Vq-GeelwKN letas YOJ6_CAEEL : 206- 215: gskit VirGeellKA gfggi L 12: 12.6594 12( 10) I-x(4,5)-K-x(1,3)-D-x-[AGILPV] Occurences: 12(10) AMPA_ECOLI : 180- 191: qhgla Iaagi-KaakDlG nmppn AMPA_HAEIN : 174- 185: shana Issgi-KaarDiA nmppn AMPL_ARATH : 18- 28: tephk Isfta-Kei-DvI ewkgd AMPL_ARATH : 25- 35: ftake IdviewKg--DiL vvgvt AMPL_BOVIN : 8- 18: glvlg Iyske-Kee-DeP qftsa AMPL_BOVIN : 284- 293: ticsa Ivsaa-Kl--DlP inivg AMPL_HUMAN : 8- 17: glvlg Iyske-Ke--DdV pqfts AMPL_HUMAN : 8- 18: glvlg Iyske-Ked-DvP qfts AMPL_PIG : 8- 17: glvlg Iyske-Ke--DdA pqfts AMPL_PIG : 8- 18: glvlg Iyske-Ked-DaP qftsa AMPL_RICPR : 452- 463: taahf Ikrfi-KdgvDwA hldia AMPL_SOLTU : 53- 63: sdapk Isiga-Kdt-DvV qwqgd YA55_SCHPO : 24- 34: illpr IplattKa--DsL ilavr YOJ6_CAEEL : 389- 400: qlene Iikag-KasgDlV apmlf M 13: 11.5102 11( 10) G-x(2)-S-x(0,2)-K Occurences: 11(10) AMPA_ECOLI : 277- 282: ltfds GgiSi-K psegm AMPA_HAEIN : 270- 275: ltfda GgiSl-K paadm AMPL_ARATH : 91- 95: vlrlp GlgS--K riali AMPL_BOVIN : 7- 11: kglvl GiyS--K ekeed AMPL_BOVIN : 7- 13: kglvl GiySkeK eedep AMPL_BOVIN : 257- 262: itfds GgiSi-K aaanm AMPL_HUMAN : 7- 11: kglvl GiyS--K ekedd AMPL_HUMAN : 7- 13: kglvl GiySkeK eddvp AMPL_PIG : 7- 11: kglvl GiyS--K ekedd AMPL_PIG : 7- 13: kglvl GiySkeK eddap AMPL_RICPR : 272- 277: vifdt GgiSl-K pssnm AMPL_SOLTU : 337- 341: ynlkt GagS--K ielmk YA55_SCHPO : 287- 292: vtfds GgiSi-K psqnm YOJ6_CAEEL : 24- 30: sliiv GkkSvlK nvtfe N 14: 11.5102 15( 10) L-x(5)-E-x(0,2)-K Occurences: 15(10) AMPA_ECOLI : 47- 55: yisal LrrgelEg-K pgqtl AMPA_HAEIN : 415- 424: awrlp LseeyqEqlK spfad AMPL_ARATH : 35- 42: wkgdi LvvgvtE--K dlakd AMPL_ARATH : 443- 452: lwrmp LeesywEmmK sgvad AMPL_ARATH : 475- 482: taalf LkqfvsE--K vqwmh AMPL_BOVIN : 6- 13: tkglv LgiyskE--K eedep AMPL_HUMAN : 6- 13: tkglv LgiyskE--K eddvp AMPL_PIG : 6- 13: tkglv LgiyskE--K eddap AMPL_RICPR : 17- 26: stnqg LivfidEqlK lnnnl AMPL_RICPR : 161- 170: esiei LtdnnsEamK lfevk AMPL_SOLTU : 510- 517: tgalf LkqfvdE--K vqwlh YA55_SCHPO : 83- 90: laivq LeenvsE--K svrsa YA55_SCHPO : 140- 147: lrrdh LsvyqdE--K vveke YA55_SCHPO : 167- 174: rltfq LlsntsE--K ktata YA55_SCHPO : 167- 175: rltfq LlsntsEk-K tatae YOJ6_CAEEL : 29- 37: gkksv LknvtfEg-K fkeva O 15: 11.0102 11( 10) T-x(1,3)-G-x(0,1)-L Occurences: 11(10) AMPA_ECOLI : 351- 357: vevln TdaeGrL vlcdv AMPA_HAEIN : 344- 350: vevln TdaeGrL vlcdt AMPL_ARATH : 372- 378: ievnn TdaeGrL tlada AMPL_BOVIN : 1- 4: Tk--G-L vlgiy AMPL_BOVIN : 331- 337: iqvdn TdaeGrL ilada AMPL_HUMAN : 1- 4: Tk--G-L vlgiy AMPL_PIG : 1- 4: Tk--G-L vlgiy AMPL_RICPR : 346- 352: aevln TdaeGrL vladt AMPL_SOLTU : 407- 413: ievnn TdaeGrL tlada YA55_SCHPO : 361- 367: veidn TdaeGrL ilada YOJ6_CAEEL : 333- 339: veinn TdaeGrL iladg P 16: 11.0102 16( 10) L-x(0,2)-G-x(3,4)-K Occurences: 16(10) AMPA_ECOLI : 47- 55: yisal LrrGelegK pgqtl AMPA_HAEIN : 64- 70: vllrd Lq-Glsa-K rlliv AMPA_HAEIN : 73- 80: sakrl LivGcgk-K gelte AMPL_ARATH : 35- 42: wkgdi LvvGvte-K dlakd AMPL_ARATH : 89- 95: stvlr Lp-Glgs-K riali AMPL_BOVIN : 4- 11: tkg LvlGiys-K ekeed AMPL_BOVIN : 6- 11: tkglv L--Giys-K ekeed AMPL_HUMAN : 4- 11: tkg LvlGiys-K ekedd AMPL_HUMAN : 6- 11: tkglv L--Giys-K ekedd AMPL_PIG : 4- 11: tkg LvlGiys-K ekedd AMPL_PIG : 6- 11: tkglv L--Giys-K ekedd AMPL_RICPR : 79- 84: liivg L--Gnve-K lteak AMPL_SOLTU : 334- 341: sggyn LktGags-K ielmk YA55_SCHPO : 275- 280: kddgw L--Glvg-K gvtfd YA55_SCHPO : 336- 343: plten LpsGsaa-K pgdvi YOJ6_CAEEL : 341- 349: egrli LadGvfyaK etlka Q 17: 11.0102 27( 10) L-x(3,5)-S-x(0,1)-E Occurences: 27(10) AMPA_ECOLI : 100- 107: ktint Lndtg-SmE avcfl AMPA_ECOLI : 143- 149: ysfdq Lktnk-S-E prrpl AMPA_ECOLI : 406- 411: plahe Liaa--S-E qsgdr AMPA_HAEIN : 42- 50: ltqgy LndlvkSgE ltgkl AMPA_HAEIN : 230- 237: gmnay LavskgS-E nraym AMPL_ARATH : 7- 14: ahtlg Ltqpn-StE phkis AMPL_ARATH : 67- 74: ahlsg LlaqvsS-E edftg AMPL_ARATH : 67- 74: ahlsg Llaqv-SsE edftg AMPL_ARATH : 67- 75: ahlsg LlaqvsSeE dftgk AMPL_ARATH : 68- 74: hlsgl Laqvs-S-E edftg AMPL_ARATH : 68- 74: hlsgl Laqv--SsE edftg AMPL_ARATH : 68- 75: hlsgl Laqvs-SeE dftgk AMPL_ARATH : 135- 142: saaiv Lassv-SdE sklss AMPL_ARATH : 475- 481: taalf Lkqfv-S-E kvqwm AMPL_BOVIN : 4- 12: tkg LvlgiySkE keede AMPL_BOVIN : 6- 12: tkglv Lgiy--SkE keede AMPL_BOVIN : 103- 109: rqiqd Leip--SvE vdpcg AMPL_BOVIN : 217- 224: emgsf LsvakgS-E eppvf AMPL_BOVIN : 217- 225: emgsf LsvakgSeE ppvfl AMPL_BOVIN : 385- 391: swmnk Lfea--SiE tgdrv AMPL_HUMAN : 4- 12: tkg LvlgiySkE keddv AMPL_HUMAN : 6- 12: tkglv Lgiy--SkE keddv AMPL_PIG : 4- 12: tkg LvlgiySkE kedda AMPL_PIG : 6- 12: tkglv Lgiy--SkE kedda AMPL_RICPR : 161- 167: esiei Ltdnn-S-E amklf AMPL_SOLTU : 102- 109: sklng LlsaasS-E edfsg AMPL_SOLTU : 102- 109: sklng Llsaa-SsE edfsg AMPL_SOLTU : 102- 110: sklng LlsaasSeE dfsgk AMPL_SOLTU : 103- 109: klngl Lsaas-S-E edfsg AMPL_SOLTU : 103- 109: klngl Lsaa--SsE edfsg AMPL_SOLTU : 103- 110: klngl Lsaas-SeE dfsgk AMPL_SOLTU : 305- 313: pyfih LcfktnSrE rktki YA55_SCHPO : 83- 89: laivq Leenv-S-E ksvrs YA55_SCHPO : 167- 173: rltfq Llsnt-S-E kktat YA55_SCHPO : 168- 173: ltfql Lsnt--S-E kktat YOJ6_CAEEL : 163- 168: edavf Ltdl--S-E svret R 18: 11.0102 23( 10) L-x(2,4)-S-x(0,1)-E Occurences: 23(10) AMPA_ECOLI : 100- 107: ktint LndtgSmE avcfl AMPA_ECOLI : 143- 149: ysfdq LktnkS-E prrpl AMPA_ECOLI : 406- 411: plahe Liaa-S-E qsgdr AMPA_HAEIN : 45- 50: gylnd Lvk--SgE ltgkl AMPA_HAEIN : 413- 417: dkawr Lpl--S-E eyqeq AMPA_HAEIN : 413- 418: dkawr Lpl--SeE yqeql AMPL_ARATH : 7- 14: ahtlg LtqpnStE phkis AMPL_ARATH : 67- 74: ahlsg LlaqvSsE edftg AMPL_ARATH : 68- 74: hlsgl LaqvsS-E edftg AMPL_ARATH : 68- 74: hlsgl Laqv-SsE edftg AMPL_ARATH : 68- 75: hlsgl LaqvsSeE dftgk AMPL_ARATH : 135- 142: saaiv LassvSdE sklss AMPL_ARATH : 475- 481: taalf LkqfvS-E kvqwm AMPL_BOVIN : 6- 12: tkglv Lgiy-SkE keede AMPL_BOVIN : 103- 109: rqiqd Leip-SvE vdpcg AMPL_BOVIN : 145- 149: vvsak Lhg--S-E dqeaw AMPL_BOVIN : 385- 391: swmnk Lfea-SiE tgdrv AMPL_HUMAN : 6- 12: tkglv Lgiy-SkE keddv AMPL_PIG : 6- 12: tkglv Lgiy-SkE kedda AMPL_RICPR : 161- 167: esiei LtdnnS-E amklf AMPL_SOLTU : 102- 109: sklng LlsaaSsE edfsg AMPL_SOLTU : 103- 109: klngl LsaasS-E edfsg AMPL_SOLTU : 103- 109: klngl Lsaa-SsE edfsg AMPL_SOLTU : 103- 110: klngl LsaasSeE dfsgk YA55_SCHPO : 83- 89: laivq LeenvS-E ksvrs YA55_SCHPO : 167- 173: rltfq LlsntS-E kktat YA55_SCHPO : 168- 173: ltfql Lsnt-S-E kktat YOJ6_CAEEL : 163- 168: edavf Ltdl-S-E svret S 19: 11.0102 10( 10) V-x(0,1)-L-x(3,5)-S Occurences: 10(10) AMPA_ECOLI : 337- 342: yrpgd V-Lttm--S gqtve AMPA_HAEIN : 379- 386: tgacv VaLgqhn-S glvst AMPL_ARATH : 134- 140: tsaai V-Lassv-S deskl AMPL_BOVIN : 5- 10: tkgl V-Lgiy--S kekee AMPL_HUMAN : 5- 10: tkgl V-Lgiy--S keked AMPL_PIG : 5- 10: tkgl V-Lgiy--S keked AMPL_RICPR : 315- 323: nvvgv VgLvenmqS gnaqr AMPL_SOLTU : 132- 139: gritl VgLgssa-S sptsy AMPL_SOLTU : 132- 140: gritl VgLgssasS ptsyh YA55_SCHPO : 81- 88: vrlai VqLeenv-S eksvr YOJ6_CAEEL : 161- 167: tneda VfLtdl--S esvre YOJ6_CAEEL : 161- 169: tneda VfLtdlseS vreta T 20: 11.0102 13( 10) V-x(0,1)-L-x(1,3)-S Occurences: 13(10) AMPA_ECOLI : 337- 342: yrpgd V-LttmS gqtve AMPA_HAEIN : 151- 154: kaets V-Le--S fifnt AMPL_ARATH : 134- 137: tsaai V-La--S svsde AMPL_ARATH : 134- 138: tsaai V-Las-S vsdes AMPL_BOVIN : 5- 10: tkgl V-LgiyS kekee AMPL_BOVIN : 158- 162: awqrg V-Lfa-S gqnla AMPL_HUMAN : 5- 10: tkgl V-LgiyS keked AMPL_PIG : 5- 10: tkgl V-LgiyS keked AMPL_RICPR : 382- 386: tgait VaLg--S tyagc AMPL_SOLTU : 132- 136: gritl VgLg--S sassp AMPL_SOLTU : 132- 137: gritl VgLgs-S asspt AMPL_SOLTU : 165- 169: arnia VsLa--S tdgls AMPL_SOLTU : 549- 553: tlvew V-Lrn-S l YA55_SCHPO : 309- 313: mggaa VmLs--S iyale YOJ6_CAEEL : 161- 167: tneda VfLtdlS esvre Number of patterns evaluated by Pratt:439 Total running time: 1 seconds