------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file CYS_SYNTHASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CYS_SYNTHASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CBS_DICDI 497 CBS_HUMAN 550 CBS_RAT 560 CBS_YEAST 507 CYSK_BACSU 308 CYSK_ECOLI 322 CYSK_HAEIN 316 CYSK_SALTY 322 CYSK_SPIOL 325 CYSK_WHEAT 325 CYSL_CAPAN 374 CYSL_SPIOL 383 CYSM_ECOLI 303 CYSM_SALTY 303 Pratt run started at Thu Feb 6 19:14:50 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 41.7005 14( 14) T-x-G-N-T-G-I-x-L-A-x(3)-A-x(2)-G 2: 41.2005 14( 14) T-x(0,1)-G-N-T-G-I-x-L-A-x(3)-A-x(2)-G 3: 32.3604 15( 14) N-x(0,2)-T-G-I-x-L-A-x(3)-A-x(2)-G 4: 31.3604 14( 14) T-x-G-N-T-G-I-x(0,2)-A-x(1,3)-A 5: 29.1904 14( 14) T-G-I-x-L-A-x(3)-A-x(2)-G 6: 29.1904 14( 14) G-x(2)-G-I-x-L-A-x(3)-A-x(2)-G 7: 28.6904 14( 14) G-x(1,2)-G-I-x-L-A-x(3)-A-x(2)-G 8: 28.6904 14( 14) S-x(0,1)-K-x-R-x(4)-M-x(3)-A-E-x(2)-G 9: 27.1904 14( 14) G-N-T-G-I-x(0,2)-A-x(1,3)-A 10: 25.0203 14( 14) G-I-x-L-A-x(3)-A-x(2)-G 11: 24.5203 14( 14) G-I-x(0,1)-L-A-x(3)-A-x(2)-G 12: 24.0203 14( 14) Q-x(2)-N-x(2)-N-P-x(2)-H-x(1,3)-T 13: 23.0203 14( 14) N-T-G-I-x(0,2)-A-x(1,3)-A 14: 20.8503 14( 14) N-P-x(2)-H-x(3)-T-x(2)-E 15: 20.8503 14( 14) I-x-L-A-x(3)-A-x(2)-G 16: 20.3503 14( 14) N-P-x(1,2)-H-x(3)-T-x(2)-E 17: 20.3503 14( 14) I-x(0,1)-L-A-x(3)-A-x(2)-G 18: 20.3503 14( 14) G-I-x-L-A-x(2,3)-A 19: 20.3503 14( 14) S-G-x(1,2)-T-G-x(2)-L 20: 19.8503 15( 14) G-x(2,3)-G-x(1,2)-L-x(4)-A-x(2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 114.7471 14( 14) T-x-G-N-T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] B 2: 114.2471 14( 14) T-x(0,1)-G-N-T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] C 3: 105.4070 15( 14) N-x(0,2)-T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] D 4: 102.2369 14( 14) T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] E 5: 102.2369 14( 14) G-x(2)-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] F 6: 101.7369 14( 14) G-x(1,2)-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] G 7: 94.8968 14( 14) G-I-x-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] H 8: 94.3968 14( 14) G-I-x(0,1)-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] I 9: 94.3968 14( 14) G-x(2)-G-x(1,2)-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] J 10: 90.7267 14( 14) I-x-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] K 11: 90.2267 14( 14) I-x(0,1)-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] L 12: 85.5410 14( 14) S-x(0,1)-K-x-R-[AI]-[AGS]-x(2)-M-[IV]-x-[ADEQ]-A-E-x(2)-G-x-[IL]-x(2)-[GS]-x(3)-[ILV]-x(2)-[PT]-[NST]-[GS]-[GN]-[NT]-[GT]-[GI]-[AGI]-[GL]-[AL]-x(3)-[AG]-[AILV] M 13: 45.8595 14( 14) Q-[FY]-x-N-x(2)-N-P-x-[AIV]-H-x(1,3)-T-[AGT]-x-E-[IL]-x(2)-[DGQ]-x(2)-[DG] N 14: 36.8209 14( 14) T-[NS]-G-N-T-G-I-x(0,2)-A-x(1,3)-A-[AILV] O 15: 35.8676 14( 14) N-P-x(2)-H-x(2)-[DGT]-T-[AG]-x-E-[IL]-x(2)-[DGQ]-x(2)-[DG] P 16: 35.3676 14( 14) N-P-x(1,2)-H-x(2)-[DGT]-T-[AG]-x-E-[IL]-x(2)-[DGQ]-x(2)-[DG] Q 17: 32.0623 14( 14) S-G-x(1,2)-T-G-[GI]-[AGT]-L-[AT]-x(2)-[AGT] R 18: 29.4296 14( 14) G-N-T-G-I-x(0,2)-A-x(1,3)-A-[AILV] S 19: 26.1950 14( 14) G-I-[AG]-L-A-x(2,3)-A-[AIL] T 20: 25.2595 14( 14) N-T-G-I-x(0,2)-A-x(1,3)-A-[AILV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 114.7471 14( 14) T-x-G-N-T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 100- 146: tliep TsGNTGIGLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 145- 191: tiiep TsGNTGIGLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 142- 188: tiiep TsGNTGIGLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 81- 127: tliep TsGNTGIGLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 72- 118: tiiep TsGNTGIGLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 68- 114: elvep TsGNTGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 69- 115: eivda TsGNTGIALAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 68- 114: elvep TnGNTGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 77- 123: vliep TsGNTGIGLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 78- 124: vliep TsGNTGIGLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 136- 182: vlvep TsGNTGIGLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 136- 182: tlvep TsGNTGIGLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 68- 114: vliea TsGNTGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 68- 114: vliea TsGNTGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm B 2: 114.2471 14( 14) T-x(0,1)-G-N-T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 100- 146: tliep TsGNTGIGLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 145- 191: tiiep TsGNTGIGLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 142- 188: tiiep TsGNTGIGLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 81- 127: tliep TsGNTGIGLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 72- 118: tiiep TsGNTGIGLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 68- 114: elvep TsGNTGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 69- 115: eivda TsGNTGIALAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 68- 114: elvep TnGNTGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 77- 123: vliep TsGNTGIGLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 78- 124: vliep TsGNTGIGLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 136- 182: vlvep TsGNTGIGLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 136- 182: tlvep TsGNTGIGLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 68- 114: vliea TsGNTGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 68- 114: vliea TsGNTGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm C 3: 105.4070 15( 14) N-x(0,2)-T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 15(14) CBS_DICDI : 103- 146: eptsg N--TGIGLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 148- 191: eptsg N--TGIGLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 145- 188: eptsg N--TGIGLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 84- 127: eptsg N--TGIGLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 75- 118: eptsg N--TGIGLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 71- 114: eptsg N--TGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 72- 115: datsg N--TGIALAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 69- 114: lvept NgnTGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SALTY : 71- 114: eptng N--TGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 80- 123: eptsg N--TGIGLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 81- 124: eptsg N--TGIGLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 139- 182: eptsg N--TGIGLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 139- 182: eptsg N--TGIGLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 71- 114: eatsg N--TGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 71- 114: eatsg N--TGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm D 4: 102.2369 14( 14) T-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 104- 146: ptsgn TGIGLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 149- 191: ptsgn TGIGLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 146- 188: ptsgn TGIGLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 85- 127: ptsgn TGIGLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 76- 118: ptsgn TGIGLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 72- 114: ptsgn TGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 73- 115: atsgn TGIALAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 72- 114: ptngn TGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 81- 123: ptsgn TGIGLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 82- 124: ptsgn TGIGLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 140- 182: ptsgn TGIGLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 140- 182: ptsgn TGIGLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 72- 114: atsgn TGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 72- 114: atsgn TGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm E 5: 102.2369 14( 14) G-x(2)-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 102- 146: iepts GntGIGLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 147- 191: iepts GntGIGLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 144- 188: iepts GntGIGLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 83- 127: iepts GntGIGLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 74- 118: iepts GntGIGLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 70- 114: vepts GntGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 71- 115: vdats GntGIALAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 70- 114: veptn GntGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 79- 123: iepts GntGIGLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 80- 124: iepts GntGIGLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 138- 182: vepts GntGIGLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 138- 182: vepts GntGIGLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 70- 114: ieats GntGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 70- 114: ieats GntGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm F 6: 101.7369 14( 14) G-x(1,2)-G-I-[AG]-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 102- 146: iepts GntGIGLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 147- 191: iepts GntGIGLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 144- 188: iepts GntGIGLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 83- 127: iepts GntGIGLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 74- 118: iepts GntGIGLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 70- 114: vepts GntGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 71- 115: vdats GntGIALAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 70- 114: veptn GntGIALAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 79- 123: iepts GntGIGLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 80- 124: iepts GntGIGLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 138- 182: vepts GntGIGLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 138- 182: vepts GntGIGLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 70- 114: ieats GntGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 70- 114: ieats GntGIALAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm G 7: 94.8968 14( 14) G-I-x-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 105- 146: tsgnt GIgLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 150- 191: tsgnt GIgLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 147- 188: tsgnt GIgLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 86- 127: tsgnt GIgLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 77- 118: tsgnt GIgLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 73- 114: tsgnt GIaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 74- 115: tsgnt GIaLAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 73- 114: tngnt GIaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 82- 123: tsgnt GIgLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 83- 124: tsgnt GIgLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 141- 182: tsgnt GIgLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 141- 182: tsgnt GIgLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 73- 114: tsgnt GIaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 73- 114: tsgnt GIaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm H 8: 94.3968 14( 14) G-I-x(0,1)-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 105- 146: tsgnt GIgLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 150- 191: tsgnt GIgLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 147- 188: tsgnt GIgLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 86- 127: tsgnt GIgLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 77- 118: tsgnt GIgLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 73- 114: tsgnt GIaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 74- 115: tsgnt GIaLAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 73- 114: tngnt GIaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 82- 123: tsgnt GIgLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 83- 124: tsgnt GIgLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 141- 182: tsgnt GIgLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 141- 182: tsgnt GIgLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 73- 114: tsgnt GIaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 73- 114: tsgnt GIaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm I 9: 94.3968 14( 14) G-x(2)-G-x(1,2)-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 102- 146: iepts GntGigLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 147- 191: iepts GntGigLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 144- 188: iepts GntGigLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 83- 127: iepts GntGigLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 74- 118: iepts GntGigLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 70- 114: vepts GntGiaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 71- 115: vdats GntGiaLAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 70- 114: veptn GntGiaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 79- 123: iepts GntGigLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 80- 124: iepts GntGigLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 138- 182: vepts GntGigLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 138- 182: vepts GntGigLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 70- 114: ieats GntGiaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 70- 114: ieats GntGiaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm J 10: 90.7267 14( 14) I-x-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 106- 146: sgntg IgLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 151- 191: sgntg IgLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 148- 188: sgntg IgLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 87- 127: sgntg IgLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 78- 118: sgntg IgLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 74- 114: sgntg IaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 75- 115: sgntg IaLAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 74- 114: ngntg IaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 83- 123: sgntg IgLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 84- 124: sgntg IgLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 142- 182: sgntg IgLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 142- 182: sgntg IgLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 74- 114: sgntg IaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 74- 114: sgntg IaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm K 11: 90.2267 14( 14) I-x(0,1)-L-A-x(2)-[AG]-A-x-[KR]-G-x-[KR]-x(2)-[IL]-x-[LM]-P-[ADE]-x-M-S-x-E-[KR]-x(2)-[AILV]-[LM]-x-[AG]-x-G-[AGV]-[EN]-[IL]-[IV]-x-[TV]-[DEPT] Occurences: 14(14) CBS_DICDI : 106- 146: sgntg IgLAltAAiKGyKmiItLPEkMSqEKvdVLkAlGGEIIrTP teaaf CBS_HUMAN : 151- 191: sgntg IgLAlaAAvRGyRciIvMPEkMSsEKvdVLrAlGAEIVrTP tnarf CBS_RAT : 148- 188: sgntg IgLAlaAAvKGyRciIvMPEkMSmEKvdVLrAlGAEIVrTP tnarf CBS_YEAST : 87- 127: sgntg IgLAliGAiKGyRtiItLPEkMSnEKvsVLkAlGAEIIrTP taaaw CYSK_BACSU : 78- 118: sgntg IgLAmvAAaKGlKaiLvMPDtMSmERrnLLrAyGAELVlTP gaegm CYSK_ECOLI : 74- 114: sgntg IaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_HAEIN : 75- 115: sgntg IaLAyvAAaRGyKitLtMPEtMSlERkrLLcGlGVNLVlTE gakgm CYSK_SALTY : 74- 114: ngntg IaLAyvAAaRGyKltLtMPEtMSiERrkLLkAlGANLVlTE gakgm CYSK_SPIOL : 83- 123: sgntg IgLAfiAAaKGyKliItMPAsMSlERrtILrAfGAELIlTD pakgm CYSK_WHEAT : 84- 124: sgntg IgLAfmAAaKGyRlvLtMPAsMSmERriILkAfGAELIlTD pllgm CYSL_CAPAN : 142- 182: sgntg IgLAfiAAsRGyKliLtMPAsMSlERrvILkAfGAELVlTD pakgm CYSL_SPIOL : 142- 182: sgntg IgLAfiAAaRGyKitLtMPAsMSmERrvILkAfGAELVlTD pakgm CYSM_ECOLI : 74- 114: sgntg IaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm CYSM_SALTY : 74- 114: sgntg IaLAmiAAlKGyRmkLlMPDnMSqERraAMrAyGAELIlVT keqgm L 12: 85.5410 14( 14) S-x(0,1)-K-x-R-[AI]-[AGS]-x(2)-M-[IV]-x-[ADEQ]-A-E-x(2)-G-x-[IL]-x(2)-[GS]-x(3)-[ILV]-x(2)-[PT]-[NST]-[GS]-[GN]-[NT]-[GT]-[GI]-[AGI]-[GL]-[AL]-x(3)-[AG]-[AILV] Occurences: 14(14) CBS_DICDI : 71- 114: fnagg SvKdRIGhrMIvDAEesGrIkkGdtlIepTSGNTGIGLAltaAI kgykm CBS_HUMAN : 116- 159: fnagg SvKdRISlrMIeDAErdGtLkpGdtiIepTSGNTGIGLAlaaAV rgyrc CBS_RAT : 113- 156: fnagg SvKdRISlrMIeDAEraGtLkpGdtiIepTSGNTGIGLAlaaAV kgyrc CBS_YEAST : 51- 94: ynpgg SiKdRIAksMVeEAEasGrIhpSrstLiePTSGNTGIGLaliGA ikgyr CYSK_BACSU : 43- 86: mnpgs SvKdRIGlaMIeAAEkeGkLkaGntiIepTSGNTGIGLAmvaAA kglka CYSK_ECOLI : 39- 82: rnpsf SvKcRIGanMIwDAEkrGvLkpGvelVepTSGNTGIALAyvaAA rgykl CYSK_HAEIN : 40- 83: rnpsy SvKcRIGanMVwQAEkdGtLtkGkeiVdaTSGNTGIALAyvaAA rgyki CYSK_SALTY : 39- 82: rnpsf SvKcRIGanMIwDAEkrGvLkpGvelVepTNGNTGIALAyvaAA rgykl CYSK_SPIOL : 47- 90: mepcs SvKdRIGfsMItDAEksGlItpGesvLiePTSGNTGIGLafiAA akgyk CYSK_WHEAT : 48- 91: mepcs SvKdRIGysMItDAEekGfIvpGksvLiePTSGNTGIGLafmAA akgyr CYSL_CAPAN : 106- 149: mepcc SvKdRIGfsMIsDAEekGlIspGktvLvePTSGNTGIGLafiAA srgyk CYSL_SPIOL : 106- 149: mepcc SvKdRIGysMIdDAEqkGvItpGkttLvePTSGNTGIGLafiAA argyk CYSM_ECOLI : 39- 82: nnpag SvKdRAAlsMIvEAEkrGeIkpGdvlIeaTSGNTGIALAmiaAL kgyrm CYSM_SALTY : 39- 82: nnpag SvKdRAAlsMIvEAEkrGeIkpGdvlIeaTSGNTGIALAmiaAL kgyrm M 13: 45.8595 14( 14) Q-[FY]-x-N-x(2)-N-P-x-[AIV]-H-x(1,3)-T-[AGT]-x-E-[IL]-x(2)-[DGQ]-x(2)-[DG] Occurences: 14(14) CBS_DICDI : 176- 200: shild QYgNpsNPlAHydgTAeELleQceG kidmi CBS_HUMAN : 221- 245: shild QYrNasNPlAHydtTAdEIlqQcdG kldml CBS_RAT : 218- 242: shild QYrNasNPlAHyddTAeEIlqQcdG kvdml CBS_YEAST : 157- 181: avild QYnNmmNPeAHyfgTGrEIqrQleD lnlfd CYSK_BACSU : 144- 168: yfvpq QFnNpsNPeIHrqtTGkEIveQfgD dqlda CYSK_ECOLI : 142- 166: ylllq QFsNpaNPeIHektTGpEIweDtdG qvdvf CYSK_HAEIN : 143- 167: yvmlk QFeNpaNPqIHretTGpEIwkDtdG kvdvv CYSK_SALTY : 142- 166: ylllq QFsNpaNPeIHektTGpEIweDtdG qvdvf CYSK_SPIOL : 150- 174: syilq QFeNpaNPkVHyetTGpEIwkGtgG kidif CYSK_WHEAT : 151- 175: syilq QFeNaaNPkIHyetTGpEIwkGtgG kidgl CYSL_CAPAN : 209- 233: ayilq QFdNpaNPkIHyetTGpEIweDtkG kidil CYSL_SPIOL : 209- 233: symlq QFdNpaNPkIHyetTGpEIweDtkG kvdif CYSM_ECOLI : 140- 164: gklld QFnNpdNPyAHyttTGpEIwqQtgG rithf CYSM_SALTY : 140- 164: gklld QFnNpdNPyAHyttTGpEIwrQtsG rithf N 14: 36.8209 14( 14) T-[NS]-G-N-T-G-I-x(0,2)-A-x(1,3)-A-[AILV] Occurences: 14(14) CBS_DICDI : 100- 113: tliep TSGNTGIglAlt-AA ikgyk CBS_DICDI : 100- 114: tliep TSGNTGIglAltaAI kgykm CBS_HUMAN : 145- 157: tiiep TSGNTGIglAl--AA avrgy CBS_HUMAN : 145- 158: tiiep TSGNTGIglAla-AA vrgyr CBS_HUMAN : 145- 159: tiiep TSGNTGIglAlaaAV rgyrc CBS_RAT : 142- 154: tiiep TSGNTGIglAl--AA avkgy CBS_RAT : 142- 155: tiiep TSGNTGIglAla-AA vkgyr CBS_RAT : 142- 156: tiiep TSGNTGIglAlaaAV kgyrc CBS_YEAST : 81- 95: tliep TSGNTGIglAligAI kgyrt CYSK_BACSU : 72- 85: tiiep TSGNTGIglAmv-AA akglk CYSK_BACSU : 72- 86: tiiep TSGNTGIglAmvaAA kglka CYSK_ECOLI : 68- 81: elvep TSGNTGIalAyv-AA argyk CYSK_ECOLI : 68- 82: elvep TSGNTGIalAyvaAA rgykl CYSK_HAEIN : 69- 82: eivda TSGNTGIalAyv-AA argyk CYSK_HAEIN : 69- 83: eivda TSGNTGIalAyvaAA rgyki CYSK_SALTY : 68- 81: elvep TNGNTGIalAyv-AA argyk CYSK_SALTY : 68- 82: elvep TNGNTGIalAyvaAA rgykl CYSK_SPIOL : 77- 90: vliep TSGNTGIglAfi-AA akgyk CYSK_SPIOL : 77- 91: vliep TSGNTGIglAfiaAA kgykl CYSK_WHEAT : 78- 91: vliep TSGNTGIglAfm-AA akgyr CYSK_WHEAT : 78- 92: vliep TSGNTGIglAfmaAA kgyrl CYSL_CAPAN : 136- 149: vlvep TSGNTGIglAfi-AA srgyk CYSL_SPIOL : 136- 149: tlvep TSGNTGIglAfi-AA argyk CYSL_SPIOL : 136- 150: tlvep TSGNTGIglAfiaAA rgyki CYSM_ECOLI : 68- 81: vliea TSGNTGIalAmi-AA lkgyr CYSM_ECOLI : 68- 82: vliea TSGNTGIalAmiaAL kgyrm CYSM_SALTY : 68- 81: vliea TSGNTGIalAmi-AA lkgyr CYSM_SALTY : 68- 82: vliea TSGNTGIalAmiaAL kgyrm O 15: 35.8676 14( 14) N-P-x(2)-H-x(2)-[DGT]-T-[AG]-x-E-[IL]-x(2)-[DGQ]-x(2)-[DG] Occurences: 14(14) CBS_DICDI : 182- 200: ygnps NPlaHydGTAeELleQceG kidmi CBS_HUMAN : 227- 245: yrnas NPlaHydTTAdEIlqQcdG kldml CBS_RAT : 224- 242: yrnas NPlaHydDTAeEIlqQcdG kvdml CBS_YEAST : 163- 181: ynnmm NPeaHyfGTGrEIqrQleD lnlfd CYSK_BACSU : 150- 168: fnnps NPeiHrqTTGkEIveQfgD dqlda CYSK_ECOLI : 148- 166: fsnpa NPeiHekTTGpEIweDtdG qvdvf CYSK_HAEIN : 149- 167: fenpa NPqiHreTTGpEIwkDtdG kvdvv CYSK_SALTY : 148- 166: fsnpa NPeiHekTTGpEIweDtdG qvdvf CYSK_SPIOL : 156- 174: fenpa NPkvHyeTTGpEIwkGtgG kidif CYSK_WHEAT : 157- 175: fenaa NPkiHyeTTGpEIwkGtgG kidgl CYSL_CAPAN : 215- 233: fdnpa NPkiHyeTTGpEIweDtkG kidil CYSL_SPIOL : 215- 233: fdnpa NPkiHyeTTGpEIweDtkG kvdif CYSM_ECOLI : 146- 164: fnnpd NPyaHytTTGpEIwqQtgG rithf CYSM_SALTY : 146- 164: fnnpd NPyaHytTTGpEIwrQtsG rithf P 16: 35.3676 14( 14) N-P-x(1,2)-H-x(2)-[DGT]-T-[AG]-x-E-[IL]-x(2)-[DGQ]-x(2)-[DG] Occurences: 14(14) CBS_DICDI : 182- 200: ygnps NPlaHydGTAeELleQceG kidmi CBS_HUMAN : 227- 245: yrnas NPlaHydTTAdEIlqQcdG kldml CBS_RAT : 224- 242: yrnas NPlaHydDTAeEIlqQcdG kvdml CBS_YEAST : 163- 181: ynnmm NPeaHyfGTGrEIqrQleD lnlfd CYSK_BACSU : 150- 168: fnnps NPeiHrqTTGkEIveQfgD dqlda CYSK_ECOLI : 148- 166: fsnpa NPeiHekTTGpEIweDtdG qvdvf CYSK_HAEIN : 149- 167: fenpa NPqiHreTTGpEIwkDtdG kvdvv CYSK_SALTY : 148- 166: fsnpa NPeiHekTTGpEIweDtdG qvdvf CYSK_SPIOL : 156- 174: fenpa NPkvHyeTTGpEIwkGtgG kidif CYSK_WHEAT : 157- 175: fenaa NPkiHyeTTGpEIwkGtgG kidgl CYSL_CAPAN : 215- 233: fdnpa NPkiHyeTTGpEIweDtkG kidil CYSL_SPIOL : 215- 233: fdnpa NPkiHyeTTGpEIweDtkG kvdif CYSM_ECOLI : 146- 164: fnnpd NPyaHytTTGpEIwqQtgG rithf CYSM_SALTY : 146- 164: fnnpd NPyaHytTTGpEIwrQtsG rithf Q 17: 32.0623 14( 14) S-G-x(1,2)-T-G-[GI]-[AGT]-L-[AT]-x(2)-[AGT] Occurences: 14(14) CBS_DICDI : 101- 112: liept SGn-TGIGLAltA aikgy CBS_HUMAN : 146- 157: iiept SGn-TGIGLAlaA avrgy CBS_RAT : 143- 154: iiept SGn-TGIGLAlaA avkgy CBS_YEAST : 82- 93: liept SGn-TGIGLAliG aikgy CYSK_BACSU : 73- 84: iiept SGn-TGIGLAmvA aakgl CYSK_ECOLI : 69- 80: lvept SGn-TGIALAyvA aargy CYSK_HAEIN : 70- 81: ivdat SGn-TGIALAyvA aargy CYSK_SALTY : 173- 185: vdvfi SGvgTGGTLTgvT ryikg CYSK_SPIOL : 78- 89: liept SGn-TGIGLAfiA aakgy CYSK_WHEAT : 79- 90: liept SGn-TGIGLAfmA aakgy CYSL_CAPAN : 137- 148: lvept SGn-TGIGLAfiA asrgy CYSL_SPIOL : 137- 148: lvept SGn-TGIGLAfiA aargy CYSM_ECOLI : 69- 80: lieat SGn-TGIALAmiA alkgy CYSM_SALTY : 69- 80: lieat SGn-TGIALAmiA alkgy R 18: 29.4296 14( 14) G-N-T-G-I-x(0,2)-A-x(1,3)-A-[AILV] Occurences: 14(14) CBS_DICDI : 102- 113: iepts GNTGIglAlt-AA ikgyk CBS_DICDI : 102- 114: iepts GNTGIglAltaAI kgykm CBS_HUMAN : 147- 157: iepts GNTGIglAl--AA avrgy CBS_HUMAN : 147- 158: iepts GNTGIglAla-AA vrgyr CBS_HUMAN : 147- 159: iepts GNTGIglAlaaAV rgyrc CBS_RAT : 144- 154: iepts GNTGIglAl--AA avkgy CBS_RAT : 144- 155: iepts GNTGIglAla-AA vkgyr CBS_RAT : 144- 156: iepts GNTGIglAlaaAV kgyrc CBS_YEAST : 83- 95: iepts GNTGIglAligAI kgyrt CYSK_BACSU : 74- 85: iepts GNTGIglAmv-AA akglk CYSK_BACSU : 74- 86: iepts GNTGIglAmvaAA kglka CYSK_ECOLI : 70- 81: vepts GNTGIalAyv-AA argyk CYSK_ECOLI : 70- 82: vepts GNTGIalAyvaAA rgykl CYSK_HAEIN : 71- 82: vdats GNTGIalAyv-AA argyk CYSK_HAEIN : 71- 83: vdats GNTGIalAyvaAA rgyki CYSK_SALTY : 70- 81: veptn GNTGIalAyv-AA argyk CYSK_SALTY : 70- 82: veptn GNTGIalAyvaAA rgykl CYSK_SPIOL : 79- 90: iepts GNTGIglAfi-AA akgyk CYSK_SPIOL : 79- 91: iepts GNTGIglAfiaAA kgykl CYSK_WHEAT : 80- 91: iepts GNTGIglAfm-AA akgyr CYSK_WHEAT : 80- 92: iepts GNTGIglAfmaAA kgyrl CYSL_CAPAN : 138- 149: vepts GNTGIglAfi-AA srgyk CYSL_SPIOL : 138- 149: vepts GNTGIglAfi-AA argyk CYSL_SPIOL : 138- 150: vepts GNTGIglAfiaAA rgyki CYSM_ECOLI : 70- 81: ieats GNTGIalAmi-AA lkgyr CYSM_ECOLI : 70- 82: ieats GNTGIalAmiaAL kgyrm CYSM_SALTY : 70- 81: ieats GNTGIalAmi-AA lkgyr CYSM_SALTY : 70- 82: ieats GNTGIalAmiaAL kgyrm S 19: 26.1950 14( 14) G-I-[AG]-L-A-x(2,3)-A-[AIL] Occurences: 14(14) CBS_DICDI : 105- 113: tsgnt GIGLAlt-AA ikgyk CBS_DICDI : 105- 114: tsgnt GIGLAltaAI kgykm CBS_HUMAN : 150- 158: tsgnt GIGLAla-AA vrgyr CBS_RAT : 147- 155: tsgnt GIGLAla-AA vkgyr CBS_YEAST : 86- 95: tsgnt GIGLAligAI kgyrt CYSK_BACSU : 77- 85: tsgnt GIGLAmv-AA akglk CYSK_BACSU : 77- 86: tsgnt GIGLAmvaAA kglka CYSK_ECOLI : 73- 81: tsgnt GIALAyv-AA argyk CYSK_ECOLI : 73- 82: tsgnt GIALAyvaAA rgykl CYSK_HAEIN : 74- 82: tsgnt GIALAyv-AA argyk CYSK_HAEIN : 74- 83: tsgnt GIALAyvaAA rgyki CYSK_SALTY : 73- 81: tngnt GIALAyv-AA argyk CYSK_SALTY : 73- 82: tngnt GIALAyvaAA rgykl CYSK_SPIOL : 82- 90: tsgnt GIGLAfi-AA akgyk CYSK_SPIOL : 82- 91: tsgnt GIGLAfiaAA kgykl CYSK_WHEAT : 83- 91: tsgnt GIGLAfm-AA akgyr CYSK_WHEAT : 83- 92: tsgnt GIGLAfmaAA kgyrl CYSL_CAPAN : 141- 149: tsgnt GIGLAfi-AA srgyk CYSL_SPIOL : 141- 149: tsgnt GIGLAfi-AA argyk CYSL_SPIOL : 141- 150: tsgnt GIGLAfiaAA rgyki CYSM_ECOLI : 73- 81: tsgnt GIALAmi-AA lkgyr CYSM_ECOLI : 73- 82: tsgnt GIALAmiaAL kgyrm CYSM_SALTY : 73- 81: tsgnt GIALAmi-AA lkgyr CYSM_SALTY : 73- 82: tsgnt GIALAmiaAL kgyrm T 20: 25.2595 14( 14) N-T-G-I-x(0,2)-A-x(1,3)-A-[AILV] Occurences: 14(14) CBS_DICDI : 103- 113: eptsg NTGIglAlt-AA ikgyk CBS_DICDI : 103- 114: eptsg NTGIglAltaAI kgykm CBS_HUMAN : 148- 157: eptsg NTGIglAl--AA avrgy CBS_HUMAN : 148- 158: eptsg NTGIglAla-AA vrgyr CBS_HUMAN : 148- 159: eptsg NTGIglAlaaAV rgyrc CBS_RAT : 145- 154: eptsg NTGIglAl--AA avkgy CBS_RAT : 145- 155: eptsg NTGIglAla-AA vkgyr CBS_RAT : 145- 156: eptsg NTGIglAlaaAV kgyrc CBS_YEAST : 84- 95: eptsg NTGIglAligAI kgyrt CYSK_BACSU : 75- 85: eptsg NTGIglAmv-AA akglk CYSK_BACSU : 75- 86: eptsg NTGIglAmvaAA kglka CYSK_ECOLI : 71- 81: eptsg NTGIalAyv-AA argyk CYSK_ECOLI : 71- 82: eptsg NTGIalAyvaAA rgykl CYSK_HAEIN : 72- 82: datsg NTGIalAyv-AA argyk CYSK_HAEIN : 72- 83: datsg NTGIalAyvaAA rgyki CYSK_SALTY : 71- 81: eptng NTGIalAyv-AA argyk CYSK_SALTY : 71- 82: eptng NTGIalAyvaAA rgykl CYSK_SPIOL : 80- 90: eptsg NTGIglAfi-AA akgyk CYSK_SPIOL : 80- 91: eptsg NTGIglAfiaAA kgykl CYSK_WHEAT : 81- 91: eptsg NTGIglAfm-AA akgyr CYSK_WHEAT : 81- 92: eptsg NTGIglAfmaAA kgyrl CYSL_CAPAN : 139- 149: eptsg NTGIglAfi-AA srgyk CYSL_SPIOL : 139- 149: eptsg NTGIglAfi-AA argyk CYSL_SPIOL : 139- 150: eptsg NTGIglAfiaAA rgyki CYSM_ECOLI : 71- 81: eatsg NTGIalAmi-AA lkgyr CYSM_ECOLI : 71- 82: eatsg NTGIalAmiaAL kgyrm CYSM_SALTY : 71- 81: eatsg NTGIalAmi-AA lkgyr CYSM_SALTY : 71- 82: eatsg NTGIalAmiaAL kgyrm Number of patterns evaluated by Pratt:8122 Total running time: 8 seconds