------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file CYS_MET_METAB_PP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CYS_MET_METAB_PP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CGL_HUMAN 361 CGL_RAT 364 CYS3_YEAST 393 METB_ECOLI 386 METB_HAEIN 369 METB_HERAU 319 METB_MYCLE 388 METC_BORAV 395 METC_ECOLI 395 METC_HAEIN 396 METC_SALTY 395 METC_YEAST 340 MT17_YEAST 443 YHR2_YEAST 378 Pratt run started at Thu Feb 6 19:14:44 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 14( 14) K-x(3)-G-H-x(4,5)-G 2: 16.1802 14( 14) T-x(4)-G-H-x(4,5)-G 3: 15.6802 14( 14) K-x(2,3)-G-x(0,1)-H-x(5)-G 4: 15.6802 16( 14) T-x(3,4)-G-x(0,1)-H-x(5)-G 5: 15.6802 16( 14) T-x(4)-G-x(0,1)-H-x(4,5)-G 6: 15.6802 16( 14) T-x(4,5)-G-x(0,1)-H-x(5)-G 7: 14.6802 14( 14) T-K-x(0,2)-Y-x(2,4)-G 8: 12.5102 20( 14) G-G-x(3)-L 9: 12.0102 22( 14) G-G-x(1,2)-S 10: 12.0102 18( 14) G-x(0,1)-G-x(2)-S 11: 12.0102 17( 14) V-x(2)-P-x(3,4)-S 12: 12.0102 29( 14) L-x(4,5)-G-x-E 13: 12.0102 15( 14) G-H-x(4,5)-G 14: 12.0102 15( 14) S-x(2)-G-x(1,2)-S 15: 12.0102 23( 14) A-x(3,4)-G-x(4)-L 16: 12.0102 18( 14) G-x-E-x(3,4)-D 17: 11.5102 27( 14) G-x(0,1)-A-x(0,1)-A 18: 11.5102 28( 14) L-x(1,2)-G-x(0,1)-A 19: 11.5102 33( 14) L-x(3,5)-G-x-E 20: 11.5102 29( 14) G-x(4,5)-L-x(4,5)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 30.2192 14( 14) T-K-[WY]-[FILMV]-x-G-H-x(4,5)-G-x-[AILV]-x-[ACTV] B 2: 28.0634 14( 14) K-x(2,3)-G-x(0,1)-H-[GNS]-[DT]-x-[ILMV]-x-G-x-[AILV]-x-[ACDTV] C 3: 28.0634 16( 14) T-x(3,4)-G-x(0,1)-H-[GNS]-[DT]-x-[ILMV]-x-G-x-[AILV]-x-[ACDTV] D 4: 28.0634 16( 14) T-x(4,5)-G-x(0,1)-H-[GNS]-[DT]-x-[ILMV]-x-G-x-[AILV]-x-[ACDTV] E 5: 26.0492 14( 14) K-[WY]-[FILMV]-x-G-H-x(4,5)-G-x-[AILV]-x-[ACTV] F 6: 23.7466 14( 14) T-K-x(0,2)-Y-x(2,4)-G-x-[NPS]-[DK]-x(3)-[GP] G 7: 16.6184 14( 14) G-x(0,1)-G-x(2)-S-[FIL]-[AGILV] H 8: 16.4936 14( 14) G-H-x(4,5)-G-x-[AILV]-x-[ACTV] I 9: 15.8449 16( 14) G-G-x(1,2)-S-x-[AGILV]-x(2)-[ADGNP] J 10: 15.6802 16( 14) T-x(4)-G-x(0,1)-H-x(4,5)-G K 11: 14.6357 14( 14) S-x-[GLP]-G-x(1,2)-S L 12: 14.2666 20( 14) L-x(4,5)-G-[FILV]-E M 13: 13.9293 21( 14) A-x(3,4)-G-[AGIPV]-x(3)-L N 14: 13.7666 22( 14) L-x(3,5)-G-[FILV]-E O 15: 12.5102 20( 14) G-G-x(3)-L P 16: 12.0102 17( 14) V-x(2)-P-x(3,4)-S Q 17: 12.0102 18( 14) G-x-E-x(3,4)-D R 18: 11.5102 14( 14) K-x(2,3)-G-x(0,1)-H S 19: 11.5102 16( 14) T-x(3,4)-G-x(0,1)-H T 20: 11.5102 16( 14) T-x(4,5)-G-x(0,1)-H Best patterns with alignements: fitness hits(seqs) Pattern A 1: 30.2192 14( 14) T-K-[WY]-[FILMV]-x-G-H-x(4,5)-G-x-[AILV]-x-[ACTV] Occurences: 14(14) CGL_HUMAN : 167- 183: smysa TKYMnGHsdvvmGlVsV ncesl CGL_RAT : 176- 192: cmcsa TKYMnGHsdvvmGlVsV nsddl CYS3_YEAST : 202- 218: vvhsa TKYInGHsdvvlGvLaT nnkpl METB_ECOLI : 197- 213: vlhsc TKYLnGHsdvvaGvViA kdpdv METB_HAEIN : 199- 215: vihsg TKYIaGHndalvGlIvA kgqel METB_HERAU : 196- 212: vlhst TKYIgGHsdvvgGaImT sndel METB_MYCLE : 207- 222: vlhst TKYIgGHsdvv-GgAlV tndee METB_MYCLE : 207- 223: vlhst TKYIgGHsdvvgGaLvT ndeel METC_BORAV : 212- 228: sviag TKYVgGHsdlmlGaVvT ndeai METC_ECOLI : 209- 225: siqaa TKYLvGHsdamiGtAvC narcw METC_HAEIN : 210- 226: siqag TKYLvGHsdimiGtAvA nartw METC_SALTY : 209- 225: siqag TKYLiGHsdamvGtAvA narcw METC_YEAST : 207- 223: sveag TKYLgGHsdlliGlAsA neecw MT17_YEAST : 207- 222: vthsa TKWIgGHgtti-GgIiV dsgkf YHR2_YEAST : 197- 213: vlysa TKYFgGHsdllsGvLvV keeat B 2: 28.0634 14( 14) K-x(2,3)-G-x(0,1)-H-[GNS]-[DT]-x-[ILMV]-x-G-x-[AILV]-x-[ACDTV] Occurences: 14(14) CGL_HUMAN : 168- 183: mysat KymnG-HSDvVmGlVsV ncesl CGL_RAT : 177- 192: mcsat KymnG-HSDvVmGlVsV nsddl CYS3_YEAST : 203- 218: vhsat KyinG-HSDvVlGvLaT nnkpl METB_ECOLI : 198- 213: lhsct KylnG-HSDvVaGvViA kdpdv METB_HAEIN : 200- 215: ihsgt KyiaG-HNDaLvGlIvA kgqel METB_HERAU : 197- 212: lhstt KyigG-HSDvVgGaImT sndel METB_HERAU : 197- 212: lhstt Kyi-GgHSDvVgGaImT sndel METB_MYCLE : 208- 223: lhstt KyigG-HSDvVgGaLvT ndeel METB_MYCLE : 208- 223: lhstt Kyi-GgHSDvVgGaLvT ndeel METC_BORAV : 213- 228: viagt KyvgG-HSDlMlGaVvT ndeai METC_BORAV : 213- 228: viagt Kyv-GgHSDlMlGaVvT ndeai METC_ECOLI : 210- 225: iqaat KylvG-HSDaMiGtAvC narcw METC_HAEIN : 211- 226: iqagt KylvG-HSDiMiGtAvA nartw METC_SALTY : 210- 225: iqagt KyliG-HSDaMvGtAvA narcw METC_YEAST : 208- 223: veagt KylgG-HSDlLiGlAsA neecw METC_YEAST : 208- 223: veagt Kyl-GgHSDlLiGlAsA neecw MT17_YEAST : 208- 223: thsat KwigG-HGTtIgGiIvD sgkfp MT17_YEAST : 208- 223: thsat Kwi-GgHGTtIgGiIvD sgkfp YHR2_YEAST : 198- 213: lysat KyfgG-HSDlLsGvLvV keeat YHR2_YEAST : 198- 213: lysat Kyf-GgHSDlLsGvLvV keeat C 3: 28.0634 16( 14) T-x(3,4)-G-x(0,1)-H-[GNS]-[DT]-x-[ILMV]-x-G-x-[AILV]-x-[ACDTV] Occurences: 16(14) CGL_HUMAN : 167- 183: smysa TkymnG-HSDvVmGlVsV ncesl CGL_RAT : 176- 192: cmcsa TkymnG-HSDvVmGlVsV nsddl CYS3_YEAST : 202- 218: vvhsa TkyinG-HSDvVlGvLaT nnkpl METB_ECOLI : 197- 213: vlhsc TkylnG-HSDvVaGvViA kdpdv METB_HAEIN : 199- 215: vihsg TkyiaG-HNDaLvGlIvA kgqel METB_HERAU : 195- 212: mvlhs TtkyiGgHSDvVgGaImT sndel METB_HERAU : 196- 212: vlhst TkyigG-HSDvVgGaImT sndel METB_HERAU : 196- 212: vlhst Tkyi-GgHSDvVgGaImT sndel METB_MYCLE : 206- 223: vvlhs TtkyiGgHSDvVgGaLvT ndeel METB_MYCLE : 207- 223: vlhst TkyigG-HSDvVgGaLvT ndeel METB_MYCLE : 207- 223: vlhst Tkyi-GgHSDvVgGaLvT ndeel METC_BORAV : 212- 228: sviag TkyvgG-HSDlMlGaVvT ndeai METC_BORAV : 212- 228: sviag Tkyv-GgHSDlMlGaVvT ndeai METC_ECOLI : 209- 225: siqaa TkylvG-HSDaMiGtAvC narcw METC_HAEIN : 210- 226: siqag TkylvG-HSDiMiGtAvA nartw METC_SALTY : 209- 225: siqag TkyliG-HSDaMvGtAvA narcw METC_YEAST : 207- 223: sveag TkylgG-HSDlLiGlAsA neecw METC_YEAST : 207- 223: sveag Tkyl-GgHSDlLiGlAsA neecw MT17_YEAST : 207- 223: vthsa TkwigG-HGTtIgGiIvD sgkfp MT17_YEAST : 207- 223: vthsa Tkwi-GgHGTtIgGiIvD sgkfp YHR2_YEAST : 197- 213: vlysa TkyfgG-HSDlLsGvLvV keeat YHR2_YEAST : 197- 213: vlysa Tkyf-GgHSDlLsGvLvV keeat D 4: 28.0634 16( 14) T-x(4,5)-G-x(0,1)-H-[GNS]-[DT]-x-[ILMV]-x-G-x-[AILV]-x-[ACDTV] Occurences: 16(14) CGL_HUMAN : 167- 183: smysa Tkymn-G-HSDvVmGlVsV ncesl CGL_RAT : 176- 192: cmcsa Tkymn-G-HSDvVmGlVsV nsddl CYS3_YEAST : 202- 218: vvhsa Tkyin-G-HSDvVlGvLaT nnkpl METB_ECOLI : 197- 213: vlhsc Tkyln-G-HSDvVaGvViA kdpdv METB_HAEIN : 199- 215: vihsg Tkyia-G-HNDaLvGlIvA kgqel METB_HERAU : 195- 212: mvlhs TtkyigG-HSDvVgGaImT sndel METB_HERAU : 195- 212: mvlhs Ttkyi-GgHSDvVgGaImT sndel METB_HERAU : 196- 212: vlhst Tkyig-G-HSDvVgGaImT sndel METB_MYCLE : 206- 223: vvlhs TtkyigG-HSDvVgGaLvT ndeel METB_MYCLE : 206- 223: vvlhs Ttkyi-GgHSDvVgGaLvT ndeel METB_MYCLE : 207- 223: vlhst Tkyig-G-HSDvVgGaLvT ndeel METC_BORAV : 212- 228: sviag Tkyvg-G-HSDlMlGaVvT ndeai METC_ECOLI : 209- 225: siqaa Tkylv-G-HSDaMiGtAvC narcw METC_HAEIN : 210- 226: siqag Tkylv-G-HSDiMiGtAvA nartw METC_SALTY : 209- 225: siqag Tkyli-G-HSDaMvGtAvA narcw METC_YEAST : 207- 223: sveag Tkylg-G-HSDlLiGlAsA neecw MT17_YEAST : 207- 223: vthsa Tkwig-G-HGTtIgGiIvD sgkfp YHR2_YEAST : 197- 213: vlysa Tkyfg-G-HSDlLsGvLvV keeat E 5: 26.0492 14( 14) K-[WY]-[FILMV]-x-G-H-x(4,5)-G-x-[AILV]-x-[ACTV] Occurences: 14(14) CGL_HUMAN : 168- 183: mysat KYMnGHsdvvmGlVsV ncesl CGL_RAT : 177- 192: mcsat KYMnGHsdvvmGlVsV nsddl CYS3_YEAST : 203- 218: vhsat KYInGHsdvvlGvLaT nnkpl METB_ECOLI : 198- 213: lhsct KYLnGHsdvvaGvViA kdpdv METB_HAEIN : 200- 215: ihsgt KYIaGHndalvGlIvA kgqel METB_HERAU : 197- 212: lhstt KYIgGHsdvvgGaImT sndel METB_MYCLE : 208- 222: lhstt KYIgGHsdvv-GgAlV tndee METB_MYCLE : 208- 223: lhstt KYIgGHsdvvgGaLvT ndeel METC_BORAV : 213- 228: viagt KYVgGHsdlmlGaVvT ndeai METC_ECOLI : 210- 225: iqaat KYLvGHsdamiGtAvC narcw METC_HAEIN : 211- 226: iqagt KYLvGHsdimiGtAvA nartw METC_SALTY : 210- 225: iqagt KYLiGHsdamvGtAvA narcw METC_YEAST : 208- 223: veagt KYLgGHsdlliGlAsA neecw MT17_YEAST : 208- 222: thsat KWIgGHgtti-GgIiV dsgkf YHR2_YEAST : 198- 213: lysat KYFgGHsdllsGvLvV keeat F 6: 23.7466 14( 14) T-K-x(0,2)-Y-x(2,4)-G-x-[NPS]-[DK]-x(3)-[GP] Occurences: 14(14) CGL_HUMAN : 167- 179: smysa TK--Ymn--GhSDvvmG lvsvn CGL_RAT : 176- 188: cmcsa TK--Ymn--GhSDvvmG lvsvn CYS3_YEAST : 202- 214: vvhsa TK--Yin--GhSDvvlG vlatn METB_ECOLI : 197- 209: vlhsc TK--Yln--GhSDvvaG vviak METB_HAEIN : 199- 211: vihsg TK--Yia--GhNDalvG livak METB_HERAU : 196- 208: vlhst TK--Yig--GhSDvvgG aimts METB_MYCLE : 207- 219: vlhst TK--Yig--GhSDvvgG alvtn METC_BORAV : 212- 224: sviag TK--Yvg--GhSDlmlG avvtn METC_ECOLI : 209- 221: siqaa TK--Ylv--GhSDamiG tavcn METC_HAEIN : 210- 222: siqag TK--Ylv--GhSDimiG tavan METC_SALTY : 209- 221: siqag TK--Yli--GhSDamvG tavan METC_YEAST : 207- 219: sveag TK--Ylg--GhSDlliG lasan MT17_YEAST : 147- 163: vfder TKavYletiGnPKynvP dfeki YHR2_YEAST : 197- 209: vlysa TK--Yfg--GhSDllsG vlvvk G 7: 16.6184 14( 14) G-x(0,1)-G-x(2)-S-[FIL]-[AGILV] Occurences: 14(14) CGL_HUMAN : 298- 304: laesl G-GfeSLA elpai CGL_RAT : 307- 313: laesl G-GyeSLA elpai CYS3_YEAST : 336- 342: laesl G-GieSLL evpav METB_ECOLI : 328- 334: laesl G-GveSLI shaat METB_HAEIN : 313- 319: faesl G-GteSFI typat METB_HERAU : 296- 302: qmrgf G-GmiSIL lkgga METB_MYCLE : 338- 344: laesl G-GveSLI eqpsa METC_BORAV : 343- 349: igfsw G-GfeSLV qlvtp METC_ECOLI : 341- 347: maysw G-GyeSLI lanqp METC_HAEIN : 342- 348: maysw G-GfeSLI lcnqp METC_SALTY : 341- 347: maysw G-GyeSLI ianqp METC_YEAST : 86- 93: vlsas GlGsiSLA llals MT17_YEAST : 341- 347: lsngf G-GvlSFG vkdlp YHR2_YEAST : 330- 336: hatsl G-GieSLV ewram H 8: 16.4936 14( 14) G-H-x(4,5)-G-x-[AILV]-x-[ACTV] Occurences: 14(14) CGL_HUMAN : 172- 183: tkymn GHsdvvmGlVsV ncesl CGL_RAT : 181- 192: tkymn GHsdvvmGlVsV nsddl CYS3_YEAST : 207- 218: tkyin GHsdvvlGvLaT nnkpl METB_ECOLI : 202- 213: tkyln GHsdvvaGvViA kdpdv METB_HAEIN : 204- 215: tkyia GHndalvGlIvA kgqel METB_HERAU : 201- 212: tkyig GHsdvvgGaImT sndel METB_MYCLE : 212- 222: tkyig GHsdvv-GgAlV tndee METB_MYCLE : 212- 223: tkyig GHsdvvgGaLvT ndeel METC_BORAV : 217- 228: tkyvg GHsdlmlGaVvT ndeai METC_ECOLI : 214- 225: tkylv GHsdamiGtAvC narcw METC_HAEIN : 215- 226: tkylv GHsdimiGtAvA nartw METC_SALTY : 214- 225: tkyli GHsdamvGtAvA narcw METC_YEAST : 212- 223: tkylg GHsdlliGlAsA neecw MT17_YEAST : 212- 222: tkwig GHgtti-GgIiV dsgkf YHR2_YEAST : 202- 213: tkyfg GHsdllsGvLvV keeat I 9: 15.8449 16( 14) G-G-x(1,2)-S-x-[AGILV]-x(2)-[ADGNP] Occurences: 16(14) CGL_HUMAN : 298- 307: laesl GGfeSlAelP aimth CGL_RAT : 307- 316: laesl GGyeSlAelP aimth CYS3_YEAST : 336- 345: laesl GGieSlLevP avmth METB_ECOLI : 328- 337: laesl GGveSlIshA atmth METB_HAEIN : 313- 322: faesl GGteSfItyP atqth METB_HERAU : 200- 208: ttkyi GGh-SdVvgG aimts METB_HERAU : 296- 305: qmrgf GGmiSiLlkG gaeaa METB_MYCLE : 211- 219: ttkyi GGh-SdVvgG alvtn METB_MYCLE : 338- 347: laesl GGveSlIeqP samth METC_BORAV : 216- 224: gtkyv GGh-SdLmlG avvtn METC_ECOLI : 341- 350: maysw GGyeSlIlaN qpehi METC_HAEIN : 342- 351: maysw GGfeSlIlcN qpeei METC_SALTY : 341- 350: maysw GGyeSlIiaN qpeqi METC_YEAST : 211- 219: gtkyl GGh-SdLliG lasan MT17_YEAST : 341- 350: lsngf GGvlSfGvkD lpnad YHR2_YEAST : 201- 209: atkyf GGh-SdLlsG vlvvk J 10: 15.6802 16( 14) T-x(4)-G-x(0,1)-H-x(4,5)-G Occurences: 16(14) CGL_HUMAN : 167- 179: smysa TkymnG-HsdvvmG lvsvn CGL_RAT : 176- 188: cmcsa TkymnG-HsdvvmG lvsvn CYS3_YEAST : 202- 214: vvhsa TkyinG-HsdvvlG vlatn METB_ECOLI : 197- 209: vlhsc TkylnG-HsdvvaG vviak METB_HAEIN : 199- 211: vihsg TkyiaG-HndalvG livak METB_HERAU : 195- 207: mvlhs TtkyiGgHsdvv-G gaimt METB_HERAU : 195- 208: mvlhs TtkyiGgHsdvvgG aimts METB_HERAU : 196- 207: vlhst TkyigG-Hsdvv-G gaimt METB_HERAU : 196- 208: vlhst TkyigG-HsdvvgG aimts METB_MYCLE : 206- 218: vvlhs TtkyiGgHsdvv-G galvt METB_MYCLE : 206- 219: vvlhs TtkyiGgHsdvvgG alvtn METB_MYCLE : 207- 218: vlhst TkyigG-Hsdvv-G galvt METB_MYCLE : 207- 219: vlhst TkyigG-HsdvvgG alvtn METC_BORAV : 212- 224: sviag TkyvgG-HsdlmlG avvtn METC_ECOLI : 209- 221: siqaa TkylvG-HsdamiG tavcn METC_HAEIN : 210- 222: siqag TkylvG-HsdimiG tavan METC_SALTY : 209- 221: siqag TkyliG-HsdamvG tavan METC_YEAST : 207- 219: sveag TkylgG-HsdlliG lasan MT17_YEAST : 207- 218: vthsa TkwigG-Hgtti-G giivd MT17_YEAST : 207- 219: vthsa TkwigG-HgttigG iivds YHR2_YEAST : 197- 209: vlysa TkyfgG-HsdllsG vlvvk K 11: 14.6357 14( 14) S-x-[GLP]-G-x(1,2)-S Occurences: 14(14) CGL_HUMAN : 296- 302: ftlae SlGGfeS laelp CGL_RAT : 305- 311: falae SlGGyeS laelp CYS3_YEAST : 334- 340: ftlae SlGGieS llevp METB_ECOLI : 326- 332: ftlae SlGGveS lisha METB_HAEIN : 311- 317: itfae SlGGteS fityp METB_HERAU : 75- 80: alvfa SgLGa-S ttlml METB_MYCLE : 336- 342: ftlae SlGGveS lieqp METC_BORAV : 341- 347: fgigf SwGGfeS lvqlv METC_ECOLI : 339- 345: fsmay SwGGyeS lilan METC_HAEIN : 340- 346: famay SwGGfeS lilcn METC_SALTY : 339- 345: fsmay SwGGyeS liian METC_YEAST : 85- 91: tvlsa SgLGsiS lalla MT17_YEAST : 319- 325: yvswv SyPGlaS hshhe YHR2_YEAST : 328- 334: fhhat SlGGieS lvewr L 12: 14.2666 20( 14) L-x(4,5)-G-[FILV]-E Occurences: 20(14) CGL_HUMAN : 293- 301: lklft LaeslgGFE slael CGL_HUMAN : 329- 337: gisdt LirlsvGLE deedl CGL_RAT : 338- 346: gisdt LirlsvGLE dekdl CYS3_YEAST : 331- 339: trlft LaeslgGIE sllev CYS3_YEAST : 367- 375: gvfdd LvrisvGIE dtddl METB_ECOLI : 323- 331: lslft LaeslgGVE slish METB_ECOLI : 359- 367: giset LlristGIE dgedl METB_ECOLI : 360- 367: isetl Lrist-GIE dgedl METB_HAEIN : 344- 352: gitnt LlrfsvGIE dvedi METB_HAEIN : 345- 352: itntl Lrfsv-GIE dvedi METB_HERAU : 265- 272: aiaqf Ltehp-GVE kviyp METB_MYCLE : 333- 341: tkvft LaeslgGVE slieq METB_MYCLE : 366- 374: evpdd LvrlsvGIE dvgdl METC_BORAV : 370- 378: ggsda LvrlhiGLE spadl METC_ECOLI : 370- 378: dfsgt LirlhiGLE dvddl METC_HAEIN : 371- 379: nltgs LirvhiGFE nvdel METC_SALTY : 370- 378: dftgt LvrvhiGLE svddl METC_YEAST : 121- 128: mlcdg Llakf-GVE tdyyd MT17_YEAST : 413- 421: gvtkd LirvsvGIE fiddi YHR2_YEAST : 117- 124: aiani Ltrny-GIE qhple M 13: 13.9293 21( 14) A-x(3,4)-G-[AGIPV]-x(3)-L Occurences: 21(14) CGL_HUMAN : 76- 85: lekav Aald-GAkycL afasg CGL_HUMAN : 294- 303: klftl Aesl-GGfesL aelpa CGL_RAT : 41- 50: lekav Aald-GAkhcL tfarg CGL_RAT : 303- 312: klfal Aesl-GGyesL aelpa CYS3_YEAST : 332- 341: rlftl Aesl-GGiesL levpa CYS3_YEAST : 332- 342: rlftl AeslgGIeslL evpav CYS3_YEAST : 357- 367: gipke AreasGVfddL vrisv METB_ECOLI : 62- 72: vqral AelegGAgavL tntgm METB_ECOLI : 324- 333: slftl Aesl-GGvesL ishaa METB_ECOLI : 349- 359: gmape AraaaGIsetL lrist METB_HAEIN : 225- 235: lcdri AyiqnGAgavL spfds METB_HERAU : 74- 83: halvf Asgl-GAsttL mlmlk METB_MYCLE : 334- 343: kvftl Aesl-GGvesL ieqps METC_BORAV : 114- 124: ehalv AdcayGPvheL heavl METC_ECOLI : 337- 346: slfsm Aysw-GGyesL ilanq METC_HAEIN : 338- 347: qlfam Aysw-GGfesL ilcnq METC_SALTY : 337- 346: slfsm Aysw-GGyesL iianq METC_YEAST : 173- 182: alvsv Akkh-GIktiL dntwa MT17_YEAST : 71- 80: leeri Aale-GGaaaL avssg YHR2_YEAST : 184- 193: pplqy Awnf-GAdivL ysatk YHR2_YEAST : 196- 206: ivlys AtkyfGGhsdL lsgvl YHR2_YEAST : 326- 335: kyfhh Atsl-GGiesL vewra N 14: 13.7666 22( 14) L-x(3,5)-G-[FILV]-E Occurences: 22(14) CGL_HUMAN : 293- 301: lklft LaeslgGFE slael CGL_HUMAN : 329- 337: gisdt LirlsvGLE deedl CGL_RAT : 338- 346: gisdt LirlsvGLE dekdl CYS3_YEAST : 331- 339: trlft LaeslgGIE sllev CYS3_YEAST : 367- 375: gvfdd LvrisvGIE dtddl METB_ECOLI : 323- 331: lslft LaeslgGVE slish METB_ECOLI : 359- 367: giset LlristGIE dgedl METB_ECOLI : 360- 367: isetl Lrist-GIE dgedl METB_HAEIN : 344- 352: gitnt LlrfsvGIE dvedi METB_HAEIN : 345- 352: itntl Lrfsv-GIE dvedi METB_HERAU : 265- 272: aiaqf Ltehp-GVE kviyp METB_MYCLE : 333- 341: tkvft LaeslgGVE slieq METB_MYCLE : 366- 374: evpdd LvrlsvGIE dvgdl METC_BORAV : 370- 378: ggsda LvrlhiGLE spadl METC_ECOLI : 370- 378: dfsgt LirlhiGLE dvddl METC_HAEIN : 371- 379: nltgs LirvhiGFE nvdel METC_SALTY : 370- 378: dftgt LvrvhiGLE svddl METC_YEAST : 121- 128: mlcdg Llakf-GVE tdyyd METC_YEAST : 122- 128: lcdgl Lakf--GVE tdyyd MT17_YEAST : 283- 289: pfasf Lllq--GVE tlslr MT17_YEAST : 413- 421: gvtkd LirvsvGIE fiddi YHR2_YEAST : 117- 124: aiani Ltrny-GIE qhple O 15: 12.5102 20( 14) G-G-x(3)-L Occurences: 20(14) CGL_HUMAN : 298- 303: laesl GGfesL aelpa CGL_RAT : 307- 312: laesl GGyesL aelpa CYS3_YEAST : 336- 341: laesl GGiesL levpa METB_ECOLI : 102- 107: phdcy GGsyrL fdsla METB_ECOLI : 328- 333: laesl GGvesL ishaa METB_HAEIN : 103- 108: ssdvy GGtyrL ldfsy METB_HERAU : 101- 106: gddvy GGtyrL fqrvm METB_MYCLE : 112- 117: pddvy GGtfrL idkvf METB_MYCLE : 307- 312: qmrgf GGmvsL rmrag METB_MYCLE : 338- 343: laesl GGvesL ieqps METC_BORAV : 216- 221: gtkyv GGhsdL mlgav METC_BORAV : 343- 348: igfsw GGfesL vqlvt METC_BORAV : 365- 370: hqywq GGsdaL vrlhi METC_ECOLI : 341- 346: maysw GGyesL ilanq METC_HAEIN : 342- 347: maysw GGfesL ilcnq METC_SALTY : 341- 346: maysw GGyesL iianq METC_YEAST : 211- 216: gtkyl GGhsdL ligla MT17_YEAST : 75- 80: iaale GGaaaL avssg YHR2_YEAST : 201- 206: atkyf GGhsdL lsgvl YHR2_YEAST : 330- 335: hatsl GGiesL vewra P 16: 12.0102 17( 14) V-x(2)-P-x(3,4)-S Occurences: 17(14) CGL_HUMAN : 37- 44: wtsra VvpPisl-S ttfkq CGL_HUMAN : 245- 252: pwvek ViyPglp-S hpqhe CGL_RAT : 254- 261: prvek ViyPglp-S hpqhe CYS3_YEAST : 25- 32: dvhgs ViePisl-S ttfkq METB_ECOLI : 23- 30: eqygc VvpPihl-S stynf METB_ECOLI : 23- 31: eqygc VvpPihlsS tynft METB_HAEIN : 25- 32: ertga VsaPifl-S taygh METB_HERAU : 23- 31: svtga VivPiyqtS tyaqr METB_HERAU : 274- 281: pgvek ViyPglp-S hpqhn METB_MYCLE : 32- 39: patga VnvPiya-S stfaq METB_MYCLE : 32- 40: patga VnvPiyasS tfaqd METB_MYCLE : 285- 292: psvsa VlyPglp-S hpghe METC_BORAV : 29- 37: tgaap VnlPsvraS tvrfq METC_ECOLI : 286- 294: pqvar VnhPalpgS kghef METC_HAEIN : 287- 294: pevkt VyhPalp-S cpghe METC_SALTY : 286- 294: pqvar VnhPalpgS kghaf METC_YEAST : 30- 38: eqsgf VnpPlykgS tiilk MT17_YEAST : 318- 325: pyvsw VsyPgla-S hshhe YHR2_YEAST : 21- 28: nrvtd VapPinv-S ttfry Q 17: 12.0102 18( 14) G-x-E-x(3,4)-D Occurences: 18(14) CGL_HUMAN : 335- 341: irlsv GlEdee-D lledl CGL_RAT : 69- 76: hllka GdEvicmD evygg CGL_RAT : 344- 350: irlsv GlEdek-D lledl CYS3_YEAST : 373- 379: vrisv GiEdtd-D lledi METB_ECOLI : 365- 371: lrist GiEdge-D liadl METB_HAEIN : 350- 356: lrfsv GiEdve-D ikadl METB_HERAU : 43- 50: vgdht GyEysrtD nptrt METB_MYCLE : 372- 378: vrlsv GiEdvg-D llcdl METC_BORAV : 376- 382: vrlhi GlEspa-D liadl METC_ECOLI : 296- 303: lpgsk GhEfwkrD ftgss METC_ECOLI : 376- 382: irlhi GlEdvd-D liadl METC_HAEIN : 297- 304: lpscp GhEfflrD fsgss METC_SALTY : 376- 382: vrvhi GlEsvd-D liadl METC_YEAST : 126- 133: llakf GvEtdyyD psigk METC_YEAST : 294- 301: fedcp GhEywvrD ykgss MT17_YEAST : 12- 18: vqlha GqEnpg-D nahrs MT17_YEAST : 419- 425: irvsv GiEfid-D iiadf YHR2_YEAST : 356- 362: irvsv GcEsan-D likdl R 18: 11.5102 14( 14) K-x(2,3)-G-x(0,1)-H Occurences: 14(14) CGL_HUMAN : 168- 173: mysat KymnG-H sdvvm CGL_RAT : 177- 182: mcsat KymnG-H sdvvm CYS3_YEAST : 203- 208: vhsat KyinG-H sdvvl METB_ECOLI : 198- 203: lhsct KylnG-H sdvva METB_HAEIN : 200- 205: ihsgt KyiaG-H ndalv METB_HERAU : 197- 202: lhstt KyigG-H sdvvg METB_HERAU : 197- 202: lhstt Kyi-GgH sdvvg METB_MYCLE : 208- 213: lhstt KyigG-H sdvvg METB_MYCLE : 208- 213: lhstt Kyi-GgH sdvvg METC_BORAV : 213- 218: viagt KyvgG-H sdlml METC_BORAV : 213- 218: viagt Kyv-GgH sdlml METC_ECOLI : 210- 215: iqaat KylvG-H sdami METC_HAEIN : 211- 216: iqagt KylvG-H sdimi METC_SALTY : 210- 215: iqagt KyliG-H sdamv METC_YEAST : 208- 213: veagt KylgG-H sdlli METC_YEAST : 208- 213: veagt Kyl-GgH sdlli MT17_YEAST : 208- 213: thsat KwigG-H gttig MT17_YEAST : 208- 213: thsat Kwi-GgH gttig YHR2_YEAST : 198- 203: lysat KyfgG-H sdlls YHR2_YEAST : 198- 203: lysat Kyf-GgH sdlls S 19: 11.5102 16( 14) T-x(3,4)-G-x(0,1)-H Occurences: 16(14) CGL_HUMAN : 167- 173: smysa TkymnG-H sdvvm CGL_RAT : 176- 182: cmcsa TkymnG-H sdvvm CYS3_YEAST : 202- 208: vvhsa TkyinG-H sdvvl METB_ECOLI : 197- 203: vlhsc TkylnG-H sdvva METB_HAEIN : 199- 205: vihsg TkyiaG-H ndalv METB_HERAU : 195- 202: mvlhs TtkyiGgH sdvvg METB_HERAU : 196- 202: vlhst TkyigG-H sdvvg METB_HERAU : 196- 202: vlhst Tkyi-GgH sdvvg METB_MYCLE : 206- 213: vvlhs TtkyiGgH sdvvg METB_MYCLE : 207- 213: vlhst TkyigG-H sdvvg METB_MYCLE : 207- 213: vlhst Tkyi-GgH sdvvg METC_BORAV : 212- 218: sviag TkyvgG-H sdlml METC_BORAV : 212- 218: sviag Tkyv-GgH sdlml METC_ECOLI : 209- 215: siqaa TkylvG-H sdami METC_HAEIN : 210- 216: siqag TkylvG-H sdimi METC_SALTY : 209- 215: siqag TkyliG-H sdamv METC_YEAST : 207- 213: sveag TkylgG-H sdlli METC_YEAST : 207- 213: sveag Tkyl-GgH sdlli MT17_YEAST : 207- 213: vthsa TkwigG-H gttig MT17_YEAST : 207- 213: vthsa Tkwi-GgH gttig YHR2_YEAST : 197- 203: vlysa TkyfgG-H sdlls YHR2_YEAST : 197- 203: vlysa Tkyf-GgH sdlls T 20: 11.5102 16( 14) T-x(4,5)-G-x(0,1)-H Occurences: 16(14) CGL_HUMAN : 167- 173: smysa Tkymn-G-H sdvvm CGL_RAT : 176- 182: cmcsa Tkymn-G-H sdvvm CYS3_YEAST : 202- 208: vvhsa Tkyin-G-H sdvvl METB_ECOLI : 197- 203: vlhsc Tkyln-G-H sdvva METB_HAEIN : 199- 205: vihsg Tkyia-G-H ndalv METB_HERAU : 195- 202: mvlhs TtkyigG-H sdvvg METB_HERAU : 195- 202: mvlhs Ttkyi-GgH sdvvg METB_HERAU : 196- 202: vlhst Tkyig-G-H sdvvg METB_MYCLE : 206- 213: vvlhs TtkyigG-H sdvvg METB_MYCLE : 206- 213: vvlhs Ttkyi-GgH sdvvg METB_MYCLE : 207- 213: vlhst Tkyig-G-H sdvvg METC_BORAV : 212- 218: sviag Tkyvg-G-H sdlml METC_ECOLI : 209- 215: siqaa Tkylv-G-H sdami METC_HAEIN : 210- 216: siqag Tkylv-G-H sdimi METC_SALTY : 209- 215: siqag Tkyli-G-H sdamv METC_YEAST : 207- 213: sveag Tkylg-G-H sdlli MT17_YEAST : 207- 213: vthsa Tkwig-G-H gttig YHR2_YEAST : 197- 203: vlysa Tkyfg-G-H sdlls Number of patterns evaluated by Pratt:4419 Total running time: 5 seconds