------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 27 sequences from file CYSTEINE_SWITCH PATTERN CONSERVATION: CM: min Nr of Seqs to Match 27 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CYSTEINE_SWITCH.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: COG1_BOVIN 469 COG1_HUMAN 469 COG1_PIG 469 COG1_RABIT 468 COG2_HUMAN 660 COG2_MOUSE 662 COG2_RAT 662 COG3_HUMAN 477 COG3_MOUSE 477 COG3_RABIT 478 COG3_RAT 475 COG7_HUMAN 267 COG8_HUMAN 467 COG9_HUMAN 707 COG9_MOUSE 730 COG9_RABIT 707 COGM_HUMAN 470 COGM_MOUSE 462 COGX_HUMAN 476 COGX_RAT 476 COGY_HUMAN 488 COGY_MOUSE 492 COGZ_HUMAN 471 COGZ_MOUSE 472 COGZ_RAT 466 GLE_CHLRE 638 HE_PARLI 587 Pratt run started at Thu Feb 6 19:14:32 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.3503 27( 27) A-x-H-x(2)-G-x(0,2)-H-x(2,3)-G 2: 18.8503 27( 27) H-E-x(2)-H-x(1,3)-L-x(1,3)-H 3: 16.1802 28( 27) P-x(0,1)-R-C-x(2)-P 4: 15.6802 28( 27) G-x(3,4)-L-A-x(4,5)-P 5: 15.6802 27( 27) F-x(3,4)-G-x(1,2)-L-x(5)-P 6: 15.1802 34( 27) D-x(0,1)-D-x(2,4)-I-x(4)-G 7: 15.1802 28( 27) A-x(1,2)-H-x(2)-G-x(0,2)-H 8: 15.1802 43( 27) G-x(2,4)-L-A-x(4,5)-P 9: 15.1802 35( 27) G-x(1,3)-L-A-x(4,5)-P 10: 15.1802 27( 27) G-x(1,2)-G-x(0,2)-L-x(5)-P 11: 15.1802 32( 27) D-x(2,3)-G-x(0,2)-L-x(5)-P 12: 15.1802 30( 27) D-x(2,4)-G-x(1,2)-L-x(5)-P 13: 15.1802 30( 27) F-x(0,1)-G-x(4)-L-x(0,2)-A 14: 15.1802 29( 27) D-x(4,5)-D-x(5)-L-x(0,2)-A 15: 14.6802 27( 27) E-x(2)-H-x(1,3)-L-x(1,3)-H 16: 14.6802 29( 27) L-x(2,4)-A-x(4)-G-x(3,5)-G 17: 14.6802 36( 27) G-x(1,3)-L-A-x(3,5)-P 18: 12.5102 30( 27) L-x(2)-D-D 19: 12.5102 29( 27) H-x(2)-G-x(2)-H 20: 12.5102 32( 27) A-x(4)-G-x(4)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 25.8356 28( 27) P-x(0,1)-R-C-[GN]-[NV]-P-[DR] B 2: 25.7243 27( 27) A-x-H-[EN]-x-G-x(0,2)-H-x(2,3)-G-x(2)-[EH] C 3: 22.8845 29( 27) L-x(2,4)-A-[ATV]-[DH]-x-[FILM]-G-x(3,5)-G D 4: 21.4546 27( 27) H-E-x(2)-H-x(1,3)-L-x(1,3)-H-[AST] E 5: 21.0559 27( 27) F-x(3,4)-G-x(1,2)-L-[AL]-x-[AGPV]-x(2)-P F 6: 20.9548 28( 27) A-x(1,2)-H-[EN]-x-G-x(0,2)-H-[ASV] G 7: 20.9006 27( 27) H-[ANSV]-x-G-[LM]-x-H-[AST] H 8: 20.5559 27( 27) G-x(1,2)-G-x(0,2)-L-[AL]-x-[AGPV]-x(2)-P I 9: 19.6603 30( 27) D-x(2,4)-G-x(1,2)-L-[ALV]-x-[AGPTV]-x(2)-P J 10: 19.0826 28( 27) F-x(0,1)-G-x-[ADEGNS]-x(2)-L-x(0,2)-A-x(4)-[ACPT] K 11: 17.7752 27( 27) D-x(4,5)-D-x(5)-L-x(0,2)-A-[FHY] L 12: 17.3636 29( 27) L-x(2)-D-D-x(2)-[DGN]-x-[DEQR] M 13: 17.2846 27( 27) E-x(2)-H-x(1,3)-L-x(1,3)-H-[AST] N 14: 17.0820 30( 27) D-x(2,3)-G-x(0,2)-L-x(2)-[AGNTV]-x(2)-P O 15: 15.6802 28( 27) G-x(3,4)-L-A-x(4,5)-P P 16: 15.1802 34( 27) D-x(0,1)-D-x(2,4)-I-x(4)-G Q 17: 15.1802 43( 27) G-x(2,4)-L-A-x(4,5)-P R 18: 15.1802 35( 27) G-x(1,3)-L-A-x(4,5)-P S 19: 14.7126 30( 27) A-x(4)-G-x(3)-[AGLP]-L T 20: 14.6802 27( 27) E-x(2)-H-x(1,3)-L-x(1,3)-H Best patterns with alignements: fitness hits(seqs) Pattern A 1: 25.8356 28( 27) P-x(0,1)-R-C-[GN]-[NV]-P-[DR] Occurences: 28(27) COG1_BOVIN : 90- 96: nvmkq P-RCGVPD vapfv COG1_HUMAN : 90- 96: kvmkq P-RCGVPD vaqfv COG1_PIG : 90- 96: nvmkq P-RCGVPD vaefv COG1_RABIT : 89- 95: kmmkq P-RCGVPD vaqfv COG2_HUMAN : 100- 106: etmrk P-RCGNPD vanyn COG2_MOUSE : 100- 106: etmrk P-RCGNPD vanyn COG2_RAT : 100- 106: etmrk P-RCGNPD vanyn COG3_HUMAN : 90- 96: evmrk P-RCGVPD vghfr COG3_MOUSE : 90- 96: elmhk P-RCGVPD vggfs COG3_RABIT : 91- 97: evirk P-RCGVPD vghfs COG3_RAT : 88- 94: elmhk P-RCGVPD vggfs COG7_HUMAN : 85- 91: eimqk P-RCGVPD vaeys COG8_HUMAN : 89- 95: dmmkk P-RCGVPD sggfm COG9_HUMAN : 97- 103: kamrt P-RCGVPD lgrfq COG9_MOUSE : 98- 104: kairt P-RCGVPD vgrfq COG9_RABIT : 97- 103: eamra P-RCGVPD vgkfq COGM_HUMAN : 90- 96: emmha P-RCGVPD vhhfr COGM_MOUSE : 83- 89: aimhi P-RCGVPD vqhlr COGX_HUMAN : 89- 95: evmrk P-RCGVPD vghfs COGX_RAT : 90- 96: emmhk P-RCGVPD vggfs COGY_HUMAN : 77- 84: asslr PpRCGVPD psdgl COGY_HUMAN : 78- 84: sslrp P-RCGVPD psdgl COGY_MOUSE : 81- 88: agssr PlRCGVPD lpdvl COGZ_HUMAN : 94- 100: dvmkk P-RCGVPD vgeyn COGZ_MOUSE : 95- 101: dimrk P-RCGVPD vgeyn COGZ_RAT : 89- 95: dimrk P-RCGVPD vgvyn GLE_CHLRE : 95- 101: ypmdd P-RCNVPR atvaa HE_PARLI : 157- 163: ellst P-RCGVPD vlpfv B 2: 25.7243 27( 27) A-x-H-[EN]-x-G-x(0,2)-H-x(2,3)-G-x(2)-[EH] Occurences: 27(27) COG1_BOVIN : 216- 228: nlyrv AaHEfG--Hsl-GlaH stdig COG1_HUMAN : 216- 228: nlhrv AaHElG--Hsl-GlsH stdig COG1_PIG : 216- 228: nlyrv AaHElG--Hsl-GlsH stdig COG1_RABIT : 215- 227: nlyrv AaHElG--Hsl-GlsH stdig COG2_HUMAN : 401- 413: slflv AaHEfG--Ham-GleH sqdpg COG2_MOUSE : 401- 413: slflv AaHEfG--Ham-GleH sqdpg COG2_RAT : 401- 413: slflv AaHEfG--Ham-GleH sqdpg COG3_HUMAN : 216- 228: nlflv AaHEiG--Hsl-GlfH sante COG3_MOUSE : 216- 228: nlflv AaHElG--Hsl-GlyH sakae COG3_RABIT : 217- 229: nlflv AaHElG--Hsl-GlfH sanpe COG3_RAT : 214- 226: nlflv AaHElG--Hsl-GlfH sanae COG7_HUMAN : 212- 224: nflya AtHElG--Hsl-GmgH ssdpn COG8_HUMAN : 215- 227: nlflv AaHEfG--Hsl-GlaH ssdpg COG9_HUMAN : 399- 411: slflv AaHEfG--Hal-GldH ssvpe COG9_MOUSE : 399- 411: slflv AaHEfG--Hal-GldH ssvpe COG9_RABIT : 399- 411: slflv AaHEfG--Hal-GldH ssvpe COGM_HUMAN : 216- 228: nlflt AvHEiG--Hsl-GlgH ssdpk COGM_MOUSE : 209- 221: nlflv AvHElG--Hsl-GlqH snnpk COGX_HUMAN : 215- 227: nlflv AaHElG--Hsl-GlfH sante COGX_RAT : 216- 228: nlflv AaHElG--Hsl-GlfH snnke COGY_HUMAN : 213- 225: dllqv AaHEfG--Hvl-GlqH ttaak COGY_MOUSE : 217- 229: dllqv AaHEfG--Hvl-GlqH ttaak COGZ_HUMAN : 220- 232: nlflv AaHEfG--Hsl-GldH skdpg COGZ_MOUSE : 221- 233: nlfiv AaHElG--Hsl-GldH skdpg COGZ_RAT : 215- 227: nlfiv AaHElG--Hsl-GldH skdpg GLE_CHLRE : 398- 413: vimhe AmHNyGleHagrGtlE ygdat HE_PARLI : 281- 293: nlfqv AaHEfG--Hsl-GlyH stvrs C 3: 22.8845 29( 27) L-x(2,4)-A-[ATV]-[DH]-x-[FILM]-G-x(3,5)-G Occurences: 29(27) COG1_BOVIN : 212- 225: fqdyn Lyrv-AAHeFGhsl--G lahst COG1_HUMAN : 212- 225: freyn Lhrv-AAHeLGhsl--G lshst COG1_PIG : 212- 225: frdyn Lyrv-AAHeLGhsl--G lshst COG1_RABIT : 211- 224: frnyn Lyrv-AAHeLGhsl--G lshst COG2_HUMAN : 397- 410: dqgys Lflv-AAHeFGham--G lehsq COG2_MOUSE : 397- 410: dqgys Lflv-AAHeFGham--G lehsq COG2_RAT : 397- 410: dqgys Lflv-AAHeFGham--G lehsq COG3_HUMAN : 212- 225: ttgtn Lflv-AAHeIGhsl--G lfhsa COG3_MOUSE : 212- 225: vtgtn Lflv-AAHeLGhsl--G lyhsa COG3_RABIT : 213- 226: ttgtn Lflv-AAHeLGhsl--G lfhsa COG3_RAT : 210- 223: vtgtn Lflv-AAHeLGhsl--G lfhsa COG7_HUMAN : 209- 221: lginf Lya--ATHeLGhsl--G mghss COG7_HUMAN : 209- 223: lginf Lya--ATHeLGhslgmG hssdp COG8_HUMAN : 211- 224: sanyn Lflv-AAHeFGhsl--G lahss COG9_HUMAN : 395- 408: dqgys Lflv-AAHeFGhal--G ldhss COG9_MOUSE : 395- 408: dqgys Lflv-AAHeFGhal--G ldhss COG9_RABIT : 395- 408: dkgys Lflv-AAHeFGhal--G ldhss COGM_HUMAN : 212- 225: sggtn Lflt-AVHeIGhsl--G lghss COGM_HUMAN : 212- 227: sggtn Lflt-AVHeIGhslglG hssdp COGM_MOUSE : 205- 218: fqgtn Lflv-AVHeLGhsl--G lqhsn COGX_HUMAN : 211- 224: asgtn Lflv-AAHeLGhsl--G lfhsa COGX_RAT : 212- 225: psgtn Lflv-AAHeLGhsl--G lfhsn COGY_HUMAN : 209- 222: dqgtd Llqv-AAHeFGhvl--G lqhtt COGY_HUMAN : 210- 222: qgtdl Lqv--AAHeFGhvl--G lqhtt COGY_MOUSE : 213- 226: nqgtd Llqv-AAHeFGhvl--G lqhtt COGY_MOUSE : 214- 226: qgtdl Lqv--AAHeFGhvl--G lqhtt COGZ_HUMAN : 216- 229: skgyn Lflv-AAHeFGhsl--G ldhsk COGZ_MOUSE : 217- 230: skgyn Lfiv-AAHeLGhsl--G ldhsk COGZ_RAT : 211- 224: skgyn Lfiv-AAHeLGhsl--G ldhsk GLE_CHLRE : 412- 428: agrgt LeygdATDvMGdfnkaG kgllc HE_PARLI : 277- 290: rsgtn Lfqv-AAHeFGhsl--G lyhst D 4: 21.4546 27( 27) H-E-x(2)-H-x(1,3)-L-x(1,3)-H-[AST] Occurences: 27(27) COG1_BOVIN : 218- 229: yrvaa HEfgHslgLa--HS tdiga COG1_BOVIN : 218- 229: yrvaa HEfgHs--LglaHS tdiga COG1_HUMAN : 218- 229: hrvaa HElgHslgLs--HS tdiga COG1_HUMAN : 218- 229: hrvaa HElgHs--LglsHS tdiga COG1_PIG : 218- 229: yrvaa HElgHslgLs--HS tdiga COG1_PIG : 218- 229: yrvaa HElgHs--LglsHS tdiga COG1_RABIT : 217- 228: yrvaa HElgHslgLs--HS tdiga COG1_RABIT : 217- 228: yrvaa HElgHs--LglsHS tdiga COG2_HUMAN : 403- 414: flvaa HEfgHamgLe--HS qdpga COG2_MOUSE : 403- 414: flvaa HEfgHamgLe--HS qdpga COG2_RAT : 403- 414: flvaa HEfgHamgLe--HS qdpga COG3_HUMAN : 218- 229: flvaa HEigHslgLf--HS antea COG3_HUMAN : 218- 229: flvaa HEigHs--LglfHS antea COG3_MOUSE : 218- 229: flvaa HElgHslgLy--HS akaea COG3_MOUSE : 218- 229: flvaa HElgHs--LglyHS akaea COG3_RABIT : 219- 230: flvaa HElgHslgLf--HS anpea COG3_RABIT : 219- 230: flvaa HElgHs--LglfHS anpea COG3_RAT : 216- 227: flvaa HElgHslgLf--HS anaea COG3_RAT : 216- 227: flvaa HElgHs--LglfHS anaea COG7_HUMAN : 214- 225: lyaat HElgHs--LgmgHS sdpna COG8_HUMAN : 217- 228: flvaa HEfgHslgLa--HS sdpga COG8_HUMAN : 217- 228: flvaa HEfgHs--LglaHS sdpga COG9_HUMAN : 401- 412: flvaa HEfgHalgLd--HS svpea COG9_HUMAN : 401- 412: flvaa HEfgHa--LgldHS svpea COG9_MOUSE : 401- 412: flvaa HEfgHalgLd--HS svpea COG9_MOUSE : 401- 412: flvaa HEfgHa--LgldHS svpea COG9_RABIT : 401- 412: flvaa HEfgHalgLd--HS svper COG9_RABIT : 401- 412: flvaa HEfgHa--LgldHS svper COGM_HUMAN : 218- 229: fltav HEigHslgLg--HS sdpka COGM_HUMAN : 218- 229: fltav HEigHs--LglgHS sdpka COGM_MOUSE : 211- 222: flvav HElgHslgLq--HS nnpks COGM_MOUSE : 211- 222: flvav HElgHs--LglqHS nnpks COGX_HUMAN : 217- 228: flvaa HElgHslgLf--HS antea COGX_HUMAN : 217- 228: flvaa HElgHs--LglfHS antea COGX_RAT : 218- 229: flvaa HElgHslgLf--HS nnkes COGX_RAT : 218- 229: flvaa HElgHs--LglfHS nnkes COGY_HUMAN : 215- 226: lqvaa HEfgHvlgLq--HT taaka COGY_HUMAN : 215- 226: lqvaa HEfgHv--LglqHT taaka COGY_MOUSE : 219- 230: lqvaa HEfgHvlgLq--HT taaka COGY_MOUSE : 219- 230: lqvaa HEfgHv--LglqHT taaka COGZ_HUMAN : 222- 233: flvaa HEfgHslgLd--HS kdpga COGZ_HUMAN : 222- 233: flvaa HEfgHs--LgldHS kdpga COGZ_MOUSE : 223- 234: fivaa HElgHslgLd--HS kdpga COGZ_MOUSE : 223- 234: fivaa HElgHs--LgldHS kdpga COGZ_RAT : 217- 228: fivaa HElgHslgLd--HS kdpga COGZ_RAT : 217- 228: fivaa HElgHs--LgldHS kdpga GLE_CHLRE : 396- 407: mqvim HEamHnygLe--HA grgtl HE_PARLI : 283- 294: fqvaa HEfgHslgLy--HS tvrsa HE_PARLI : 283- 294: fqvaa HEfgHs--LglyHS tvrsa E 5: 21.0559 27( 27) F-x(3,4)-G-x(1,2)-L-[AL]-x-[AGPV]-x(2)-P Occurences: 27(27) COG1_BOVIN : 174- 187: rdnsp FdgpgGn-LAhAfqP gagig COG1_BOVIN : 174- 187: rdnsp Fdgp-GgnLAhAfqP gagig COG1_HUMAN : 174- 187: rdnsp FdgpgGn-LAhAfqP gpgig COG1_HUMAN : 174- 187: rdnsp Fdgp-GgnLAhAfqP gpgig COG1_PIG : 174- 187: rdnsp FdgpgGn-LAhAfqP gpgig COG1_PIG : 174- 187: rdnsp Fdgp-GgnLAhAfqP gpgig COG1_RABIT : 173- 186: rdnsp FdgpeGq-LAhAfqP glgig COG2_HUMAN : 184- 197: gdgyp FdgkdGl-LAhAfaP gtgvg COG2_MOUSE : 184- 197: gdgyp FdgkdGl-LAhAfaP gtgvg COG2_RAT : 184- 197: gdgyp FdgkdGl-LAhAfaP gtgvg COG3_HUMAN : 174- 187: gdfyp Fdgp-GnvLAhAyaP gpgin COG3_MOUSE : 174- 187: gdfvp Fdgp-GtvLAhAyaP gpgin COG3_RABIT : 175- 188: gdfip Fdgp-GnvLAhAyaP gpgin COG3_RAT : 172- 185: gdfip Fdgp-GmvLAhAyaP gpgtn COG7_HUMAN : 169- 182: gdsyp Fdgp-GntLAhAfaP gtglg COG8_HUMAN : 173- 186: gdnsp FdgpnGi-LAhAfqP gqgig COG9_HUMAN : 181- 194: gdgyp FdgkdGl-LAhAfpP gpgiq COG9_MOUSE : 181- 194: gdgyp FdgkdGl-LAhAfpP gagvq COG9_RABIT : 181- 194: gdgyp FdgkdGl-LAhAfpP gpgiq COGM_HUMAN : 174- 187: gdfha FdgkgGi-LAhAfgP gsgig COGM_HUMAN : 174- 187: gdfha Fdgk-GgiLAhAfgP gsgig COGM_MOUSE : 167- 180: gdfny FdgkgGt-LAhVfyP gpgiq COGM_MOUSE : 167- 180: gdfny Fdgk-GgtLAhVfyP gpgiq COGX_HUMAN : 173- 186: gdfys Fdgp-GhsLAhAypP gpgly COGX_RAT : 174- 187: gdfyp Fdgv-GqsLAhAypP gpgfy COGY_HUMAN : 170- 183: gddlp FdgpgGi-LAhAffP kthre COGY_HUMAN : 170- 183: gddlp Fdgp-GgiLAhAffP kthre COGY_MOUSE : 174- 187: gdnlp FdgpgGi-LAhGffP kthre COGY_MOUSE : 174- 187: gdnlp Fdgp-GgiLAhGffP kthre COGZ_HUMAN : 178- 191: gdfyp FdgpsGl-LAhAfpP gpnyg COGZ_MOUSE : 179- 192: gdfyp FdgpsGl-LAhAfpP gpnyg COGZ_RAT : 173- 186: gdfyp FdgpsGl-LAhAfpP gpnlg GLE_CHLRE : 424- 437: dvmgd Fnka-GkgLLcPnaP nmyri HE_PARLI : 241- 254: gdgis FdgrgGv-LAhAflP rngda HE_PARLI : 241- 254: gdgis Fdgr-GgvLAhAflP rngda F 6: 20.9548 28( 27) A-x(1,2)-H-[EN]-x-G-x(0,2)-H-[ASV] Occurences: 28(27) COG1_BOVIN : 216- 223: nlyrv Aa-HEfG--HS lglah COG1_HUMAN : 216- 223: nlhrv Aa-HElG--HS lglsh COG1_PIG : 216- 223: nlyrv Aa-HElG--HS lglsh COG1_RABIT : 215- 222: nlyrv Aa-HElG--HS lglsh COG2_HUMAN : 401- 408: slflv Aa-HEfG--HA mgleh COG2_MOUSE : 401- 408: slflv Aa-HEfG--HA mgleh COG2_RAT : 401- 408: slflv Aa-HEfG--HA mgleh COG3_HUMAN : 216- 223: nlflv Aa-HEiG--HS lglfh COG3_MOUSE : 216- 223: nlflv Aa-HElG--HS lglyh COG3_RABIT : 217- 224: nlflv Aa-HElG--HS lglfh COG3_RAT : 214- 221: nlflv Aa-HElG--HS lglfh COG7_HUMAN : 211- 219: infly AatHElG--HS lgmgh COG7_HUMAN : 212- 219: nflya At-HElG--HS lgmgh COG8_HUMAN : 215- 222: nlflv Aa-HEfG--HS lglah COG9_HUMAN : 399- 406: slflv Aa-HEfG--HA lgldh COG9_MOUSE : 399- 406: slflv Aa-HEfG--HA lgldh COG9_RABIT : 399- 406: slflv Aa-HEfG--HA lgldh COGM_HUMAN : 216- 223: nlflt Av-HEiG--HS lglgh COGM_MOUSE : 209- 216: nlflv Av-HElG--HS lglqh COGX_HUMAN : 215- 222: nlflv Aa-HElG--HS lglfh COGX_RAT : 216- 223: nlflv Aa-HElG--HS lglfh COGY_HUMAN : 213- 220: dllqv Aa-HEfG--HV lglqh COGY_MOUSE : 217- 224: dllqv Aa-HEfG--HV lglqh COGZ_HUMAN : 220- 227: nlflv Aa-HEfG--HS lgldh COGZ_MOUSE : 221- 228: nlfiv Aa-HElG--HS lgldh COGZ_RAT : 215- 222: nlfiv Aa-HElG--HS lgldh GLE_CHLRE : 398- 407: vimhe Am-HNyGleHA grgtl HE_PARLI : 281- 288: nlfqv Aa-HEfG--HS lglyh G 7: 20.9006 27( 27) H-[ANSV]-x-G-[LM]-x-H-[AST] Occurences: 27(27) COG1_BOVIN : 222- 229: ahefg HSlGLaHS tdiga COG1_HUMAN : 222- 229: ahelg HSlGLsHS tdiga COG1_PIG : 222- 229: ahelg HSlGLsHS tdiga COG1_RABIT : 221- 228: ahelg HSlGLsHS tdiga COG2_HUMAN : 407- 414: ahefg HAmGLeHS qdpga COG2_MOUSE : 407- 414: ahefg HAmGLeHS qdpga COG2_RAT : 407- 414: ahefg HAmGLeHS qdpga COG3_HUMAN : 222- 229: aheig HSlGLfHS antea COG3_MOUSE : 222- 229: ahelg HSlGLyHS akaea COG3_RABIT : 223- 230: ahelg HSlGLfHS anpea COG3_RAT : 220- 227: ahelg HSlGLfHS anaea COG7_HUMAN : 218- 225: thelg HSlGMgHS sdpna COG8_HUMAN : 221- 228: ahefg HSlGLaHS sdpga COG9_HUMAN : 405- 412: ahefg HAlGLdHS svpea COG9_MOUSE : 405- 412: ahefg HAlGLdHS svpea COG9_RABIT : 405- 412: ahefg HAlGLdHS svper COGM_HUMAN : 222- 229: vheig HSlGLgHS sdpka COGM_MOUSE : 215- 222: vhelg HSlGLqHS nnpks COGX_HUMAN : 221- 228: ahelg HSlGLfHS antea COGX_RAT : 222- 229: ahelg HSlGLfHS nnkes COGY_HUMAN : 219- 226: ahefg HVlGLqHT taaka COGY_MOUSE : 223- 230: ahefg HVlGLqHT taaka COGZ_HUMAN : 226- 233: ahefg HSlGLdHS kdpga COGZ_MOUSE : 227- 234: ahelg HSlGLdHS kdpga COGZ_RAT : 221- 228: ahelg HSlGLdHS kdpga GLE_CHLRE : 400- 407: mheam HNyGLeHA grgtl HE_PARLI : 287- 294: ahefg HSlGLyHS tvrsa H 8: 20.5559 27( 27) G-x(1,2)-G-x(0,2)-L-[AL]-x-[AGPV]-x(2)-P Occurences: 27(27) COG1_BOVIN : 176- 187: nspfd GpgGn-LAhAfqP gagig COG1_BOVIN : 176- 187: nspfd Gp-GgnLAhAfqP gagig COG1_HUMAN : 176- 187: nspfd GpgGn-LAhAfqP gpgig COG1_HUMAN : 176- 187: nspfd Gp-GgnLAhAfqP gpgig COG1_PIG : 176- 187: nspfd GpgGn-LAhAfqP gpgig COG1_PIG : 176- 187: nspfd Gp-GgnLAhAfqP gpgig COG1_RABIT : 175- 186: nspfd GpeGq-LAhAfqP glgig COG2_HUMAN : 186- 197: gypfd GkdGl-LAhAfaP gtgvg COG2_MOUSE : 186- 197: gypfd GkdGl-LAhAfaP gtgvg COG2_RAT : 186- 197: gypfd GkdGl-LAhAfaP gtgvg COG3_HUMAN : 176- 187: fypfd Gp-GnvLAhAyaP gpgin COG3_MOUSE : 176- 187: fvpfd Gp-GtvLAhAyaP gpgin COG3_RABIT : 177- 188: fipfd Gp-GnvLAhAyaP gpgin COG3_RAT : 174- 185: fipfd Gp-GmvLAhAyaP gpgtn COG7_HUMAN : 171- 182: sypfd Gp-GntLAhAfaP gtglg COG8_HUMAN : 175- 186: nspfd GpnGi-LAhAfqP gqgig COG9_HUMAN : 183- 194: gypfd GkdGl-LAhAfpP gpgiq COG9_MOUSE : 183- 194: gypfd GkdGl-LAhAfpP gagvq COG9_RABIT : 183- 194: gypfd GkdGl-LAhAfpP gpgiq COGM_HUMAN : 176- 187: fhafd GkgGi-LAhAfgP gsgig COGM_HUMAN : 176- 187: fhafd Gk-GgiLAhAfgP gsgig COGM_MOUSE : 169- 180: fnyfd GkgGt-LAhVfyP gpgiq COGM_MOUSE : 169- 180: fnyfd Gk-GgtLAhVfyP gpgiq COGX_HUMAN : 175- 186: fysfd Gp-GhsLAhAypP gpgly COGX_RAT : 176- 187: fypfd Gv-GqsLAhAypP gpgfy COGY_HUMAN : 172- 183: dlpfd GpgGi-LAhAffP kthre COGY_HUMAN : 172- 183: dlpfd Gp-GgiLAhAffP kthre COGY_MOUSE : 176- 187: nlpfd GpgGi-LAhGffP kthre COGY_MOUSE : 176- 187: nlpfd Gp-GgiLAhGffP kthre COGZ_HUMAN : 180- 191: fypfd GpsGl-LAhAfpP gpnyg COGZ_MOUSE : 181- 192: fypfd GpsGl-LAhAfpP gpnyg COGZ_RAT : 175- 186: fypfd GpsGl-LAhAfpP gpnlg GLE_CHLRE : 428- 437: dfnka Gk-G--LLcPnaP nmyri HE_PARLI : 243- 254: gisfd GrgGv-LAhAflP rngda HE_PARLI : 243- 254: gisfd Gr-GgvLAhAflP rngda I 9: 19.6603 30( 27) D-x(2,4)-G-x(1,2)-L-[ALV]-x-[AGPTV]-x(2)-P Occurences: 30(27) COG1_BOVIN : 175- 187: dnspf Dgpg-Gn-LAhAfqP gagig COG1_BOVIN : 175- 187: dnspf Dgp--GgnLAhAfqP gagig COG1_HUMAN : 175- 187: dnspf Dgpg-Gn-LAhAfqP gpgig COG1_HUMAN : 175- 187: dnspf Dgp--GgnLAhAfqP gpgig COG1_PIG : 175- 187: dnspf Dgpg-Gn-LAhAfqP gpgig COG1_PIG : 175- 187: dnspf Dgp--GgnLAhAfqP gpgig COG1_RABIT : 174- 186: dnspf Dgpe-Gq-LAhAfqP glgig COG2_HUMAN : 185- 197: dgypf Dgkd-Gl-LAhAfaP gtgvg COG2_HUMAN : 501- 514: tvtpr Dkpm-GplLVaTfwP elpek COG2_MOUSE : 185- 197: dgypf Dgkd-Gl-LAhAfaP gtgvg COG2_MOUSE : 503- 516: tvtpr Dkpt-GplLVaTfwP elpek COG2_RAT : 185- 197: dgypf Dgkd-Gl-LAhAfaP gtgvg COG2_RAT : 503- 516: tvtpr Dkpt-GplLVaTfwP elpek COG3_HUMAN : 175- 187: dfypf Dgp--GnvLAhAyaP gpgin COG3_MOUSE : 175- 187: dfvpf Dgp--GtvLAhAyaP gpgin COG3_RABIT : 176- 188: dfipf Dgp--GnvLAhAyaP gpgin COG3_RAT : 173- 185: dfipf Dgp--GmvLAhAyaP gpgtn COG7_HUMAN : 170- 182: dsypf Dgp--GntLAhAfaP gtglg COG8_HUMAN : 174- 186: dnspf Dgpn-Gi-LAhAfqP gqgig COG9_HUMAN : 182- 194: dgypf Dgkd-Gl-LAhAfpP gpgiq COG9_MOUSE : 182- 194: dgypf Dgkd-Gl-LAhAfpP gagvq COG9_RABIT : 182- 194: dgypf Dgkd-Gl-LAhAfpP gpgiq COGM_HUMAN : 175- 187: dfhaf Dgkg-Gi-LAhAfgP gsgig COGM_HUMAN : 175- 187: dfhaf Dgk--GgiLAhAfgP gsgig COGM_MOUSE : 168- 180: dfnyf Dgkg-Gt-LAhVfyP gpgiq COGM_MOUSE : 168- 180: dfnyf Dgk--GgtLAhVfyP gpgiq COGX_HUMAN : 174- 186: dfysf Dgp--GhsLAhAypP gpgly COGX_RAT : 175- 187: dfypf Dgv--GqsLAhAypP gpgfy COGY_HUMAN : 171- 183: ddlpf Dgpg-Gi-LAhAffP kthre COGY_HUMAN : 171- 183: ddlpf Dgp--GgiLAhAffP kthre COGY_MOUSE : 175- 187: dnlpf Dgpg-Gi-LAhGffP kthre COGY_MOUSE : 175- 187: dnlpf Dgp--GgiLAhGffP kthre COGZ_HUMAN : 179- 191: dfypf Dgps-Gl-LAhAfpP gpnyg COGZ_MOUSE : 180- 192: dfypf Dgps-Gl-LAhAfpP gpnyg COGZ_RAT : 174- 186: dfypf Dgps-Gl-LAhAfpP gpnlg GLE_CHLRE : 423- 437: tdvmg DfnkaGkgLLcPnaP nmyri HE_PARLI : 242- 254: dgisf Dgrg-Gv-LAhAflP rngda HE_PARLI : 242- 254: dgisf Dgr--GgvLAhAflP rngda J 10: 19.0826 28( 27) F-x(0,1)-G-x-[ADEGNS]-x(2)-L-x(0,2)-A-x(4)-[ACPT] Occurences: 28(27) COG1_BOVIN : 174- 187: rdnsp FdGpGgnL--AhafqP gagig COG1_BOVIN : 174- 189: rdnsp FdGpGgnLahAfqpgA giggd COG1_HUMAN : 174- 187: rdnsp FdGpGgnL--AhafqP gpgig COG1_HUMAN : 174- 189: rdnsp FdGpGgnLahAfqpgP giggd COG1_PIG : 174- 187: rdnsp FdGpGgnL--AhafqP gpgig COG1_PIG : 174- 189: rdnsp FdGpGgnLahAfqpgP giggd COG1_RABIT : 173- 186: rdnsp FdGpEgqL--AhafqP glgig COG2_HUMAN : 184- 197: gdgyp FdGkDglL--AhafaP gtgvg COG2_HUMAN : 184- 199: gdgyp FdGkDglLahAfapgT gvggd COG2_MOUSE : 184- 197: gdgyp FdGkDglL--AhafaP gtgvg COG2_MOUSE : 184- 199: gdgyp FdGkDglLahAfapgT gvggd COG2_RAT : 184- 197: gdgyp FdGkDglL--AhafaP gtgvg COG2_RAT : 184- 199: gdgyp FdGkDglLahAfapgT gvggd COG3_HUMAN : 174- 187: gdfyp FdGpGnvL--AhayaP gpgin COG3_HUMAN : 174- 189: gdfyp FdGpGnvLahAyapgP gingd COG3_MOUSE : 174- 187: gdfvp FdGpGtvL--AhayaP gpgin COG3_MOUSE : 174- 189: gdfvp FdGpGtvLahAyapgP gingd COG3_RABIT : 175- 188: gdfip FdGpGnvL--AhayaP gpgin COG3_RABIT : 175- 190: gdfip FdGpGnvLahAyapgP gingd COG3_RAT : 172- 185: gdfip FdGpGmvL--AhayaP gpgtn COG3_RAT : 172- 187: gdfip FdGpGmvLahAyapgP gtngd COG7_HUMAN : 169- 182: gdsyp FdGpGntL--AhafaP gtglg COG7_HUMAN : 169- 184: gdsyp FdGpGntLahAfapgT glggd COG8_HUMAN : 173- 186: gdnsp FdGpNgiL--AhafqP gqgig COG8_HUMAN : 219- 231: vaahe F-GhSlgL--AhssdP galmy COG9_HUMAN : 181- 194: gdgyp FdGkDglL--AhafpP gpgiq COG9_HUMAN : 181- 196: gdgyp FdGkDglLahAfppgP giqgd COG9_MOUSE : 181- 194: gdgyp FdGkDglL--AhafpP gagvq COG9_MOUSE : 181- 196: gdgyp FdGkDglLahAfppgA gvqgd COG9_RABIT : 181- 194: gdgyp FdGkDglL--AhafpP gpgiq COG9_RABIT : 181- 196: gdgyp FdGkDglLahAfppgP giqgd COGM_HUMAN : 174- 187: gdfha FdGkGgiL--AhafgP gsgig COGM_MOUSE : 167- 180: gdfny FdGkGgtL--AhvfyP gpgiq COGX_HUMAN : 173- 186: gdfys FdGpGhsL--AhaypP gpgly COGX_HUMAN : 173- 188: gdfys FdGpGhsLahAyppgP glygd COGX_RAT : 174- 187: gdfyp FdGvGqsL--AhaypP gpgfy COGX_RAT : 174- 189: gdfyp FdGvGqsLahAyppgP gfygd COGY_HUMAN : 170- 183: gddlp FdGpGgiL--AhaffP kthre COGY_HUMAN : 170- 185: gddlp FdGpGgiLahAffpkT hregd COGY_MOUSE : 174- 187: gdnlp FdGpGgiL--AhgffP kthre COGZ_HUMAN : 178- 191: gdfyp FdGpSglL--AhafpP gpnyg COGZ_HUMAN : 178- 193: gdfyp FdGpSglLahAfppgP nyggd COGZ_MOUSE : 179- 192: gdfyp FdGpSglL--AhafpP gpnyg COGZ_MOUSE : 179- 194: gdfyp FdGpSglLahAfppgP nyggd COGZ_RAT : 173- 186: gdfyp FdGpSglL--AhafpP gpnlg COGZ_RAT : 173- 188: gdfyp FdGpSglLahAfppgP nlggd GLE_CHLRE : 8- 22: latrr F-GaAaaLlvAacvlC tapaw HE_PARLI : 241- 254: gdgis FdGrGgvL--AhaflP rngda K 11: 17.7752 27( 27) D-x(4,5)-D-x(5)-L-x(0,2)-A-[FHY] Occurences: 27(27) COG1_BOVIN : 170- 183: rgdhr Dnspf-DgpggnL--AH afqpg COG1_BOVIN : 170- 185: rgdhr Dnspf-DgpggnLahAF qpgag COG1_HUMAN : 170- 183: rgdhr Dnspf-DgpggnL--AH afqpg COG1_HUMAN : 170- 185: rgdhr Dnspf-DgpggnLahAF qpgpg COG1_PIG : 170- 183: rgdhr Dnspf-DgpggnL--AH afqpg COG1_PIG : 170- 185: rgdhr Dnspf-DgpggnLahAF qpgpg COG1_RABIT : 169- 182: rgdhr Dnspf-DgpegqL--AH afqpg COG1_RABIT : 169- 184: rgdhr Dnspf-DgpegqLahAF qpglg COG2_HUMAN : 180- 193: rwehg Dgypf-DgkdglL--AH afapg COG2_HUMAN : 180- 195: rwehg Dgypf-DgkdglLahAF apgtg COG2_MOUSE : 180- 193: rwehg Dgypf-DgkdglL--AH afapg COG2_MOUSE : 180- 195: rwehg Dgypf-DgkdglLahAF apgtg COG2_RAT : 180- 193: rwehg Dgypf-DgkdglL--AH afapg COG2_RAT : 180- 195: rwehg Dgypf-DgkdglLahAF apgtg COG3_HUMAN : 170- 183: vrehg Dfypf-DgpgnvL--AH ayapg COG3_HUMAN : 170- 185: vrehg Dfypf-DgpgnvLahAY apgpg COG3_MOUSE : 170- 183: vgehg Dfvpf-DgpgtvL--AH ayapg COG3_MOUSE : 170- 185: vgehg Dfvpf-DgpgtvLahAY apgpg COG3_RABIT : 171- 184: vrehg Dfipf-DgpgnvL--AH ayapg COG3_RABIT : 171- 186: vrehg Dfipf-DgpgnvLahAY apgpg COG3_RAT : 168- 181: veehg Dfipf-DgpgmvL--AH ayapg COG3_RAT : 168- 183: veehg Dfipf-DgpgmvLahAY apgpg COG7_HUMAN : 165- 178: rgahg Dsypf-DgpgntL--AH afapg COG7_HUMAN : 165- 180: rgahg Dsypf-DgpgntLahAF apgtg COG8_HUMAN : 169- 182: qrdhg Dnspf-DgpngiL--AH afqpg COG8_HUMAN : 169- 184: qrdhg Dnspf-DgpngiLahAF qpgqg COG9_HUMAN : 177- 190: vaehg Dgypf-DgkdglL--AH afppg COG9_HUMAN : 177- 192: vaehg Dgypf-DgkdglLahAF ppgpg COG9_MOUSE : 177- 190: vaehg Dgypf-DgkdglL--AH afppg COG9_MOUSE : 177- 192: vaehg Dgypf-DgkdglLahAF ppgag COG9_RABIT : 177- 190: vaehg Dgypf-DgkdglL--AH afppg COG9_RABIT : 177- 192: vaehg Dgypf-DgkdglLahAF ppgpg COGM_HUMAN : 170- 183: rgahg Dfhaf-DgkggiL--AH afgpg COGM_HUMAN : 170- 185: rgahg Dfhaf-DgkggiLahAF gpgsg COGM_MOUSE : 163- 176: fgahg Dfnyf-DgkggtL--AH vfypg COGX_HUMAN : 169- 182: vkehg Dfysf-DgpghsL--AH ayppg COGX_HUMAN : 169- 184: vkehg Dfysf-DgpghsLahAY ppgpg COGX_RAT : 170- 183: vgehg Dfypf-DgvgqsL--AH ayppg COGX_RAT : 170- 185: vgehg Dfypf-DgvgqsLahAY ppgpg COGY_HUMAN : 166- 179: rywdg Ddlpf-DgpggiL--AH affpk COGY_HUMAN : 166- 181: rywdg Ddlpf-DgpggiLahAF fpkth COGY_MOUSE : 170- 183: rywdg Dnlpf-DgpggiL--AH gffpk COGZ_HUMAN : 174- 187: ikehg Dfypf-DgpsglL--AH afppg COGZ_HUMAN : 174- 189: ikehg Dfypf-DgpsglLahAF ppgpn COGZ_MOUSE : 175- 188: tkehg Dfypf-DgpsglL--AH afppg COGZ_MOUSE : 175- 190: tkehg Dfypf-DgpsglLahAF ppgpn COGZ_RAT : 169- 182: tkehg Dfypf-DgpsglL--AH afppg COGZ_RAT : 169- 184: tkehg Dfypf-DgpsglLahAF ppgpn GLE_CHLRE : 530- 546: taggy DsgltlDfhkkvLvhAY ngiqs HE_PARLI : 237- 250: sydhg Dgisf-DgrggvL--AH aflpr HE_PARLI : 237- 252: sydhg Dgisf-DgrggvLahAF lprng L 12: 17.3636 29( 27) L-x(2)-D-D-x(2)-[DGN]-x-[DEQR] Occurences: 29(27) COG1_BOVIN : 248- 257: sgdvq LsqDDidGiQ aiygp COG1_HUMAN : 248- 257: sgdvq LaqDDidGiQ aiygr COG1_PIG : 248- 257: tgdvq LsqDDidGiQ aiygp COG1_RABIT : 247- 256: sgdvq LaqDDidGiQ aiygp COG2_HUMAN : 433- 442: tknfr LsqDDikGiQ elyga COG2_MOUSE : 433- 442: tknfr LshDDikGiQ elygp COG2_RAT : 433- 442: tknfr LshDDikGiQ elygp COG3_HUMAN : 251- 260: ltrfr LsqDDinGiQ slygp COG3_MOUSE : 251- 260: lsrfh LsqDDvdGiQ slygt COG3_RABIT : 252- 261: larfr LsqDDvdGiQ slygp COG3_RAT : 249- 258: larfh LsqDDvdGiQ slygp COG7_HUMAN : 246- 255: pqnfk LsqDDikGiQ klygk COG8_HUMAN : 249- 258: tsnys LpqDDidGiQ aiygl COG9_HUMAN : 431- 440: tegpp LhkDDvnGiR hlygp COG9_MOUSE : 431- 440: legfp LnkDDidGiQ ylygr COG9_RABIT : 431- 440: legsp LheDDvrGiQ hlygp COGM_HUMAN : 250- 259: intfr LsaDDirGiQ slygd COGM_MOUSE : 243- 252: pstfr LsaDDirNiQ slyga COGX_HUMAN : 250- 259: laqfr LsqDDvnGiQ slygp COGX_HUMAN : 424- 433: qgfpr LiaDDfpGvE pkvda COGX_RAT : 251- 260: qanir LsqDDieGiQ slyga COGX_RAT : 424- 433: kgfpr LitDDfpGiE pqvda COGY_HUMAN : 245- 254: rypls LspDDcrGvQ hlygq COGY_MOUSE : 249- 258: rypls LspDDrrGiQ hlygr COGZ_HUMAN : 254- 263: kshfm LpdDDvqGiQ slygp COGZ_MOUSE : 255- 264: kshfm LpdDDvqGiQ flygp COGZ_RAT : 249- 258: kshfm LpdDDvqGiQ slygp GLE_CHLRE : 616- 625: engke LscDDgiDnD cdglq HE_PARLI : 314- 323: vpnfr LdnDDiaGiR slygs M 13: 17.2846 27( 27) E-x(2)-H-x(1,3)-L-x(1,3)-H-[AST] Occurences: 27(27) COG1_BOVIN : 219- 229: rvaah EfgHslgLa--HS tdiga COG1_BOVIN : 219- 229: rvaah EfgHs--LglaHS tdiga COG1_HUMAN : 219- 229: rvaah ElgHslgLs--HS tdiga COG1_HUMAN : 219- 229: rvaah ElgHs--LglsHS tdiga COG1_PIG : 219- 229: rvaah ElgHslgLs--HS tdiga COG1_PIG : 219- 229: rvaah ElgHs--LglsHS tdiga COG1_RABIT : 218- 228: rvaah ElgHslgLs--HS tdiga COG1_RABIT : 218- 228: rvaah ElgHs--LglsHS tdiga COG2_HUMAN : 404- 414: lvaah EfgHamgLe--HS qdpga COG2_MOUSE : 404- 414: lvaah EfgHamgLe--HS qdpga COG2_RAT : 404- 414: lvaah EfgHamgLe--HS qdpga COG3_HUMAN : 219- 229: lvaah EigHslgLf--HS antea COG3_HUMAN : 219- 229: lvaah EigHs--LglfHS antea COG3_MOUSE : 219- 229: lvaah ElgHslgLy--HS akaea COG3_MOUSE : 219- 229: lvaah ElgHs--LglyHS akaea COG3_RABIT : 220- 230: lvaah ElgHslgLf--HS anpea COG3_RABIT : 220- 230: lvaah ElgHs--LglfHS anpea COG3_RAT : 217- 227: lvaah ElgHslgLf--HS anaea COG3_RAT : 217- 227: lvaah ElgHs--LglfHS anaea COG7_HUMAN : 215- 225: yaath ElgHs--LgmgHS sdpna COG8_HUMAN : 218- 228: lvaah EfgHslgLa--HS sdpga COG8_HUMAN : 218- 228: lvaah EfgHs--LglaHS sdpga COG9_HUMAN : 402- 412: lvaah EfgHalgLd--HS svpea COG9_HUMAN : 402- 412: lvaah EfgHa--LgldHS svpea COG9_MOUSE : 402- 412: lvaah EfgHalgLd--HS svpea COG9_MOUSE : 402- 412: lvaah EfgHa--LgldHS svpea COG9_RABIT : 402- 412: lvaah EfgHalgLd--HS svper COG9_RABIT : 402- 412: lvaah EfgHa--LgldHS svper COGM_HUMAN : 219- 229: ltavh EigHslgLg--HS sdpka COGM_HUMAN : 219- 229: ltavh EigHs--LglgHS sdpka COGM_MOUSE : 212- 222: lvavh ElgHslgLq--HS nnpks COGM_MOUSE : 212- 222: lvavh ElgHs--LglqHS nnpks COGX_HUMAN : 218- 228: lvaah ElgHslgLf--HS antea COGX_HUMAN : 218- 228: lvaah ElgHs--LglfHS antea COGX_RAT : 219- 229: lvaah ElgHslgLf--HS nnkes COGX_RAT : 219- 229: lvaah ElgHs--LglfHS nnkes COGY_HUMAN : 216- 226: qvaah EfgHvlgLq--HT taaka COGY_HUMAN : 216- 226: qvaah EfgHv--LglqHT taaka COGY_MOUSE : 220- 230: qvaah EfgHvlgLq--HT taaka COGY_MOUSE : 220- 230: qvaah EfgHv--LglqHT taaka COGZ_HUMAN : 223- 233: lvaah EfgHslgLd--HS kdpga COGZ_HUMAN : 223- 233: lvaah EfgHs--LgldHS kdpga COGZ_MOUSE : 224- 234: ivaah ElgHslgLd--HS kdpga COGZ_MOUSE : 224- 234: ivaah ElgHs--LgldHS kdpga COGZ_RAT : 218- 228: ivaah ElgHslgLd--HS kdpga COGZ_RAT : 218- 228: ivaah ElgHs--LgldHS kdpga GLE_CHLRE : 397- 407: qvimh EamHnygLe--HA grgtl HE_PARLI : 284- 294: qvaah EfgHslgLy--HS tvrsa HE_PARLI : 284- 294: qvaah EfgHs--LglyHS tvrsa N 14: 17.0820 30( 27) D-x(2,3)-G-x(0,2)-L-x(2)-[AGNTV]-x(2)-P Occurences: 30(27) COG1_BOVIN : 175- 187: dnspf DgpgGn-LahAfqP gagig COG1_BOVIN : 175- 187: dnspf Dgp-GgnLahAfqP gagig COG1_HUMAN : 175- 187: dnspf DgpgGn-LahAfqP gpgig COG1_HUMAN : 175- 187: dnspf Dgp-GgnLahAfqP gpgig COG1_PIG : 175- 187: dnspf DgpgGn-LahAfqP gpgig COG1_PIG : 175- 187: dnspf Dgp-GgnLahAfqP gpgig COG1_RABIT : 174- 186: dnspf DgpeGq-LahAfqP glgig COG2_HUMAN : 185- 197: dgypf DgkdGl-LahAfaP gtgvg COG2_HUMAN : 501- 514: tvtpr DkpmGplLvaTfwP elpek COG2_MOUSE : 185- 197: dgypf DgkdGl-LahAfaP gtgvg COG2_MOUSE : 503- 516: tvtpr DkptGplLvaTfwP elpek COG2_RAT : 185- 197: dgypf DgkdGl-LahAfaP gtgvg COG2_RAT : 503- 516: tvtpr DkptGplLvaTfwP elpek COG3_HUMAN : 175- 187: dfypf Dgp-GnvLahAyaP gpgin COG3_MOUSE : 175- 187: dfvpf Dgp-GtvLahAyaP gpgin COG3_RABIT : 176- 188: dfipf Dgp-GnvLahAyaP gpgin COG3_RAT : 173- 185: dfipf Dgp-GmvLahAyaP gpgtn COG7_HUMAN : 170- 182: dsypf Dgp-GntLahAfaP gtglg COG8_HUMAN : 174- 186: dnspf DgpnGi-LahAfqP gqgig COG9_HUMAN : 182- 194: dgypf DgkdGl-LahAfpP gpgiq COG9_MOUSE : 182- 194: dgypf DgkdGl-LahAfpP gagvq COG9_RABIT : 182- 194: dgypf DgkdGl-LahAfpP gpgiq COGM_HUMAN : 175- 187: dfhaf DgkgGi-LahAfgP gsgig COGM_HUMAN : 175- 187: dfhaf Dgk-GgiLahAfgP gsgig COGM_MOUSE : 168- 180: dfnyf DgkgGt-LahVfyP gpgiq COGM_MOUSE : 168- 180: dfnyf Dgk-GgtLahVfyP gpgiq COGX_HUMAN : 174- 186: dfysf Dgp-GhsLahAypP gpgly COGX_RAT : 175- 187: dfypf Dgv-GqsLahAypP gpgfy COGY_HUMAN : 171- 183: ddlpf DgpgGi-LahAffP kthre COGY_HUMAN : 171- 183: ddlpf Dgp-GgiLahAffP kthre COGY_MOUSE : 175- 187: dnlpf DgpgGi-LahGffP kthre COGY_MOUSE : 175- 187: dnlpf Dgp-GgiLahGffP kthre COGZ_HUMAN : 179- 191: dfypf DgpsGl-LahAfpP gpnyg COGZ_MOUSE : 180- 192: dfypf DgpsGl-LahAfpP gpnyg COGZ_RAT : 174- 186: dfypf DgpsGl-LahAfpP gpnlg GLE_CHLRE : 625- 635: dgidn Dcd-G--LqdNedP dcq HE_PARLI : 242- 254: dgisf DgrgGv-LahAflP rngda HE_PARLI : 242- 254: dgisf Dgr-GgvLahAflP rngda O 15: 15.6802 28( 27) G-x(3,4)-L-A-x(4,5)-P Occurences: 28(27) COG1_BOVIN : 176- 187: nspfd GpggnLAhafq-P gagig COG1_HUMAN : 176- 187: nspfd GpggnLAhafq-P gpgig COG1_PIG : 176- 187: nspfd GpggnLAhafq-P gpgig COG1_RABIT : 175- 186: nspfd GpegqLAhafq-P glgig COG2_HUMAN : 186- 197: gypfd GkdglLAhafa-P gtgvg COG2_MOUSE : 186- 197: gypfd GkdglLAhafa-P gtgvg COG2_RAT : 186- 197: gypfd GkdglLAhafa-P gtgvg COG3_HUMAN : 176- 187: fypfd GpgnvLAhaya-P gpgin COG3_MOUSE : 176- 187: fvpfd GpgtvLAhaya-P gpgin COG3_RABIT : 177- 188: fipfd GpgnvLAhaya-P gpgin COG3_RAT : 174- 185: fipfd GpgmvLAhaya-P gpgtn COG7_HUMAN : 171- 182: sypfd GpgntLAhafa-P gtglg COG8_HUMAN : 175- 186: nspfd GpngiLAhafq-P gqgig COG8_HUMAN : 220- 231: aahef GhslgLAhssd-P galmy COG9_HUMAN : 183- 194: gypfd GkdglLAhafp-P gpgiq COG9_MOUSE : 183- 194: gypfd GkdglLAhafp-P gagvq COG9_RABIT : 183- 194: gypfd GkdglLAhafp-P gpgiq COGM_HUMAN : 176- 187: fhafd GkggiLAhafg-P gsgig COGM_MOUSE : 169- 180: fnyfd GkggtLAhvfy-P gpgiq COGX_HUMAN : 175- 186: fysfd GpghsLAhayp-P gpgly COGX_RAT : 176- 187: fypfd GvgqsLAhayp-P gpgfy COGY_HUMAN : 172- 183: dlpfd GpggiLAhaff-P kthre COGY_MOUSE : 176- 187: nlpfd GpggiLAhgff-P kthre COGZ_HUMAN : 180- 191: fypfd GpsglLAhafp-P gpnyg COGZ_MOUSE : 181- 192: fypfd GpsglLAhafp-P gpnyg COGZ_RAT : 175- 186: fypfd GpsglLAhafp-P gpnlg GLE_CHLRE : 154- 165: eeqrt Grvl-LAtsaelP tptfr HE_PARLI : 243- 254: gisfd GrggvLAhafl-P rngda P 16: 15.1802 34( 27) D-x(0,1)-D-x(2,4)-I-x(4)-G Occurences: 34(27) COG1_BOVIN : 251- 261: vqlsq D-Didg-IqaiyG psqnp COG1_HUMAN : 251- 261: vqlaq D-Didg-IqaiyG rsqnp COG1_PIG : 251- 261: vqlsq D-Didg-IqaiyG psenp COG1_RABIT : 45- 55: yynlk D-Dwrk-IpkqrG nglav COG1_RABIT : 250- 260: vqlaq D-Didg-IqaiyG psqnp COG2_HUMAN : 436- 446: frlsq D-Dikg-IqelyG aspdi COG2_MOUSE : 436- 446: frlsh D-Dikg-IqelyG pspda COG2_RAT : 436- 446: frlsh D-Dikg-IqelyG pspda COG3_HUMAN : 254- 264: frlsq D-Ding-IqslyG pppds COG3_MOUSE : 254- 264: fhlsq D-Dvdg-IqslyG tptas COG3_RABIT : 255- 265: frlsq D-Dvdg-IqslyG papas COG3_RAT : 252- 262: fhlsq D-Dvdg-IqslyG pptes COG7_HUMAN : 249- 259: fklsq D-Dikg-IqklyG krsns COG8_HUMAN : 252- 262: yslpq D-Didg-IqaiyG lssnp COG8_HUMAN : 335- 346: qaaye DfDrdl-IflfkG nqywa COG9_HUMAN : 434- 444: pplhk D-Dvng-IrhlyG prpep COG9_MOUSE : 434- 444: fplnk D-Didg-IqylyG rgskp COG9_RABIT : 434- 444: splhe D-Dvrg-IqhlyG pnpnp COGM_HUMAN : 253- 263: frlsa D-Dirg-IqslyG dpken COGM_MOUSE : 246- 256: frlsa D-Dirn-IqslyG apvkp COGX_HUMAN : 253- 263: frlsq D-Dvng-IqslyG pppas COGX_RAT : 254- 264: irlsq D-Dieg-IqslyG arpss COGY_HUMAN : 194- 206: gdvhf DyDetwtIgddqG tdllq COGY_MOUSE : 198- 210: gdvhf DyDetwtIgdnqG tdllq COGY_MOUSE : 252- 262: lslsp D-Drrg-IqhlyG rpqmt COGZ_HUMAN : 256- 267: hfmlp DdDvqg-IqslyG pgded COGZ_HUMAN : 256- 267: hfmlp D-DdvqgIqslyG pgded COGZ_HUMAN : 257- 267: fmlpd D-Dvqg-IqslyG pgded COGZ_MOUSE : 257- 268: hfmlp DdDvqg-IqflyG pgded COGZ_MOUSE : 257- 268: hfmlp D-DdvqgIqflyG pgded COGZ_MOUSE : 258- 268: fmlpd D-Dvqg-IqflyG pgded COGZ_RAT : 251- 262: hfmlp DdDvqg-IqslyG pgded COGZ_RAT : 251- 262: hfmlp D-DdvqgIqslyG pgded COGZ_RAT : 252- 262: fmlpd D-Dvqg-IqslyG pgded GLE_CHLRE : 489- 498: aqgtr D-Dnm--IvvnvG aqstr HE_PARLI : 315- 327: pnfrl DnDdiagIrslyG snsgs HE_PARLI : 317- 327: frldn D-Diag-IrslyG snsgs Q 17: 15.1802 43( 27) G-x(2,4)-L-A-x(4,5)-P Occurences: 43(27) COG1_BOVIN : 176- 187: nspfd GpggnLAhafq-P gagig COG1_BOVIN : 178- 187: pfdgp Ggn--LAhafq-P gagig COG1_HUMAN : 176- 187: nspfd GpggnLAhafq-P gpgig COG1_HUMAN : 178- 187: pfdgp Ggn--LAhafq-P gpgig COG1_PIG : 176- 187: nspfd GpggnLAhafq-P gpgig COG1_PIG : 178- 187: pfdgp Ggn--LAhafq-P gpgig COG1_RABIT : 175- 186: nspfd GpegqLAhafq-P glgig COG2_HUMAN : 186- 197: gypfd GkdglLAhafa-P gtgvg COG2_MOUSE : 186- 197: gypfd GkdglLAhafa-P gtgvg COG2_RAT : 186- 197: gypfd GkdglLAhafa-P gtgvg COG3_HUMAN : 176- 187: fypfd GpgnvLAhaya-P gpgin COG3_HUMAN : 178- 187: pfdgp Gnv--LAhaya-P gpgin COG3_MOUSE : 176- 187: fvpfd GpgtvLAhaya-P gpgin COG3_MOUSE : 178- 187: pfdgp Gtv--LAhaya-P gpgin COG3_RABIT : 177- 188: fipfd GpgnvLAhaya-P gpgin COG3_RABIT : 179- 188: pfdgp Gnv--LAhaya-P gpgin COG3_RAT : 174- 185: fipfd GpgmvLAhaya-P gpgtn COG3_RAT : 176- 185: pfdgp Gmv--LAhaya-P gpgtn COG7_HUMAN : 171- 182: sypfd GpgntLAhafa-P gtglg COG7_HUMAN : 173- 182: pfdgp Gnt--LAhafa-P gtglg COG8_HUMAN : 175- 186: nspfd GpngiLAhafq-P gqgig COG8_HUMAN : 220- 231: aahef GhslgLAhssd-P galmy COG9_HUMAN : 183- 194: gypfd GkdglLAhafp-P gpgiq COG9_MOUSE : 183- 194: gypfd GkdglLAhafp-P gagvq COG9_RABIT : 183- 194: gypfd GkdglLAhafp-P gpgiq COGM_HUMAN : 176- 187: fhafd GkggiLAhafg-P gsgig COGM_HUMAN : 178- 187: afdgk Ggi--LAhafg-P gsgig COGM_MOUSE : 169- 180: fnyfd GkggtLAhvfy-P gpgiq COGM_MOUSE : 171- 180: yfdgk Ggt--LAhvfy-P gpgiq COGX_HUMAN : 175- 186: fysfd GpghsLAhayp-P gpgly COGX_HUMAN : 177- 186: sfdgp Ghs--LAhayp-P gpgly COGX_RAT : 176- 187: fypfd GvgqsLAhayp-P gpgfy COGX_RAT : 178- 187: pfdgv Gqs--LAhayp-P gpgfy COGY_HUMAN : 172- 183: dlpfd GpggiLAhaff-P kthre COGY_HUMAN : 174- 183: pfdgp Ggi--LAhaff-P kthre COGY_MOUSE : 176- 187: nlpfd GpggiLAhgff-P kthre COGY_MOUSE : 178- 187: pfdgp Ggi--LAhgff-P kthre COGZ_HUMAN : 180- 191: fypfd GpsglLAhafp-P gpnyg COGZ_MOUSE : 181- 192: fypfd GpsglLAhafp-P gpnyg COGZ_RAT : 175- 186: fypfd GpsglLAhafp-P gpnlg GLE_CHLRE : 154- 165: eeqrt Grvl-LAtsaelP tptfr HE_PARLI : 243- 254: gisfd GrggvLAhafl-P rngda HE_PARLI : 245- 254: sfdgr Ggv--LAhafl-P rngda R 18: 15.1802 35( 27) G-x(1,3)-L-A-x(4,5)-P Occurences: 35(27) COG1_BOVIN : 178- 187: pfdgp Ggn-LAhafq-P gagig COG1_BOVIN : 179- 187: fdgpg Gn--LAhafq-P gagig COG1_HUMAN : 178- 187: pfdgp Ggn-LAhafq-P gpgig COG1_HUMAN : 179- 187: fdgpg Gn--LAhafq-P gpgig COG1_PIG : 178- 187: pfdgp Ggn-LAhafq-P gpgig COG1_PIG : 179- 187: fdgpg Gn--LAhafq-P gpgig COG1_RABIT : 178- 186: fdgpe Gq--LAhafq-P glgig COG2_HUMAN : 189- 197: fdgkd Gl--LAhafa-P gtgvg COG2_MOUSE : 189- 197: fdgkd Gl--LAhafa-P gtgvg COG2_RAT : 189- 197: fdgkd Gl--LAhafa-P gtgvg COG3_HUMAN : 178- 187: pfdgp Gnv-LAhaya-P gpgin COG3_MOUSE : 178- 187: pfdgp Gtv-LAhaya-P gpgin COG3_RABIT : 179- 188: pfdgp Gnv-LAhaya-P gpgin COG3_RAT : 176- 185: pfdgp Gmv-LAhaya-P gpgtn COG7_HUMAN : 173- 182: pfdgp Gnt-LAhafa-P gtglg COG8_HUMAN : 178- 186: fdgpn Gi--LAhafq-P gqgig COG9_HUMAN : 186- 194: fdgkd Gl--LAhafp-P gpgiq COG9_MOUSE : 186- 194: fdgkd Gl--LAhafp-P gagvq COG9_RABIT : 186- 194: fdgkd Gl--LAhafp-P gpgiq COGM_HUMAN : 178- 187: afdgk Ggi-LAhafg-P gsgig COGM_HUMAN : 179- 187: fdgkg Gi--LAhafg-P gsgig COGM_MOUSE : 171- 180: yfdgk Ggt-LAhvfy-P gpgiq COGM_MOUSE : 172- 180: fdgkg Gt--LAhvfy-P gpgiq COGX_HUMAN : 177- 186: sfdgp Ghs-LAhayp-P gpgly COGX_RAT : 178- 187: pfdgv Gqs-LAhayp-P gpgfy COGY_HUMAN : 174- 183: pfdgp Ggi-LAhaff-P kthre COGY_HUMAN : 175- 183: fdgpg Gi--LAhaff-P kthre COGY_MOUSE : 178- 187: pfdgp Ggi-LAhgff-P kthre COGY_MOUSE : 179- 187: fdgpg Gi--LAhgff-P kthre COGZ_HUMAN : 183- 191: fdgps Gl--LAhafp-P gpnyg COGZ_MOUSE : 184- 192: fdgps Gl--LAhafp-P gpnyg COGZ_RAT : 178- 186: fdgps Gl--LAhafp-P gpnlg GLE_CHLRE : 154- 165: eeqrt GrvlLAtsaelP tptfr HE_PARLI : 245- 254: sfdgr Ggv-LAhafl-P rngda HE_PARLI : 246- 254: fdgrg Gv--LAhafl-P rngda S 19: 14.7126 30( 27) A-x(4)-G-x(3)-[AGLP]-L Occurences: 30(27) COG1_BOVIN : 216- 226: nlyrv AahefGhslGL ahstd COG1_HUMAN : 216- 226: nlhrv AahelGhslGL shstd COG1_PIG : 216- 226: nlyrv AahelGhslGL shstd COG1_RABIT : 215- 225: nlyrv AahelGhslGL shstd COG2_HUMAN : 401- 411: slflv AahefGhamGL ehsqd COG2_MOUSE : 401- 411: slflv AahefGhamGL ehsqd COG2_RAT : 401- 411: slflv AahefGhamGL ehsqd COG3_HUMAN : 216- 226: nlflv AaheiGhslGL fhsan COG3_MOUSE : 216- 226: nlflv AahelGhslGL yhsak COG3_RABIT : 217- 227: nlflv AahelGhslGL fhsan COG3_RAT : 214- 224: nlflv AahelGhslGL fhsan COG7_HUMAN : 132- 142: rlvsk AlnmwGkeiPL hfrkv COG8_HUMAN : 215- 225: nlflv AahefGhslGL ahssd COG9_HUMAN : 243- 253: grsys ActtdGrsdGL pwcst COG9_HUMAN : 399- 409: slflv AahefGhalGL dhssv COG9_MOUSE : 144- 154: dafar AfavwGevaPL tftrv COG9_MOUSE : 399- 409: slflv AahefGhalGL dhssv COG9_RABIT : 399- 409: slflv AahefGhalGL dhssv COG9_RABIT : 616- 626: phvtg AlpraGgkvLL fgaqr COGM_HUMAN : 216- 226: nlflt AvheiGhslGL ghssd COGM_MOUSE : 209- 219: nlflv AvhelGhslGL qhsnn COGX_HUMAN : 215- 225: nlflv AahelGhslGL fhsan COGX_RAT : 216- 226: nlflv AahelGhslGL fhsnn COGY_HUMAN : 213- 223: dllqv AahefGhvlGL qhtta COGY_MOUSE : 217- 227: dllqv AahefGhvlGL qhtta COGZ_HUMAN : 220- 230: nlflv AahefGhslGL dhskd COGZ_MOUSE : 221- 231: nlfiv AahelGhslGL dhskd COGZ_RAT : 215- 225: nlfiv AahelGhslGL dhskd GLE_CHLRE : 4- 14: msl AtrrfGaaaAL lvaac HE_PARLI : 281- 291: nlfqv AahefGhslGL yhstv T 20: 14.6802 27( 27) E-x(2)-H-x(1,3)-L-x(1,3)-H Occurences: 27(27) COG1_BOVIN : 219- 228: rvaah EfgHslgLa--H stdig COG1_BOVIN : 219- 228: rvaah EfgHs--LglaH stdig COG1_HUMAN : 219- 228: rvaah ElgHslgLs--H stdig COG1_HUMAN : 219- 228: rvaah ElgHs--LglsH stdig COG1_PIG : 219- 228: rvaah ElgHslgLs--H stdig COG1_PIG : 219- 228: rvaah ElgHs--LglsH stdig COG1_RABIT : 218- 227: rvaah ElgHslgLs--H stdig COG1_RABIT : 218- 227: rvaah ElgHs--LglsH stdig COG2_HUMAN : 404- 413: lvaah EfgHamgLe--H sqdpg COG2_MOUSE : 404- 413: lvaah EfgHamgLe--H sqdpg COG2_RAT : 404- 413: lvaah EfgHamgLe--H sqdpg COG3_HUMAN : 219- 228: lvaah EigHslgLf--H sante COG3_HUMAN : 219- 228: lvaah EigHs--LglfH sante COG3_MOUSE : 219- 228: lvaah ElgHslgLy--H sakae COG3_MOUSE : 219- 228: lvaah ElgHs--LglyH sakae COG3_RABIT : 220- 229: lvaah ElgHslgLf--H sanpe COG3_RABIT : 220- 229: lvaah ElgHs--LglfH sanpe COG3_RAT : 217- 226: lvaah ElgHslgLf--H sanae COG3_RAT : 217- 226: lvaah ElgHs--LglfH sanae COG7_HUMAN : 215- 224: yaath ElgHs--LgmgH ssdpn COG8_HUMAN : 218- 227: lvaah EfgHslgLa--H ssdpg COG8_HUMAN : 218- 227: lvaah EfgHs--LglaH ssdpg COG9_HUMAN : 402- 411: lvaah EfgHalgLd--H ssvpe COG9_HUMAN : 402- 411: lvaah EfgHa--LgldH ssvpe COG9_MOUSE : 402- 411: lvaah EfgHalgLd--H ssvpe COG9_MOUSE : 402- 411: lvaah EfgHa--LgldH ssvpe COG9_RABIT : 402- 411: lvaah EfgHalgLd--H ssvpe COG9_RABIT : 402- 411: lvaah EfgHa--LgldH ssvpe COGM_HUMAN : 219- 228: ltavh EigHslgLg--H ssdpk COGM_HUMAN : 219- 228: ltavh EigHs--LglgH ssdpk COGM_MOUSE : 212- 221: lvavh ElgHslgLq--H snnpk COGM_MOUSE : 212- 221: lvavh ElgHs--LglqH snnpk COGX_HUMAN : 218- 227: lvaah ElgHslgLf--H sante COGX_HUMAN : 218- 227: lvaah ElgHs--LglfH sante COGX_RAT : 219- 228: lvaah ElgHslgLf--H snnke COGX_RAT : 219- 228: lvaah ElgHs--LglfH snnke COGY_HUMAN : 216- 225: qvaah EfgHvlgLq--H ttaak COGY_HUMAN : 216- 225: qvaah EfgHv--LglqH ttaak COGY_MOUSE : 220- 229: qvaah EfgHvlgLq--H ttaak COGY_MOUSE : 220- 229: qvaah EfgHv--LglqH ttaak COGZ_HUMAN : 223- 232: lvaah EfgHslgLd--H skdpg COGZ_HUMAN : 223- 232: lvaah EfgHs--LgldH skdpg COGZ_MOUSE : 224- 233: ivaah ElgHslgLd--H skdpg COGZ_MOUSE : 224- 233: ivaah ElgHs--LgldH skdpg COGZ_RAT : 218- 227: ivaah ElgHslgLd--H skdpg COGZ_RAT : 218- 227: ivaah ElgHs--LgldH skdpg GLE_CHLRE : 397- 406: qvimh EamHnygLe--H agrgt HE_PARLI : 284- 293: qvaah EfgHslgLy--H stvrs HE_PARLI : 284- 293: qvaah EfgHs--LglyH stvrs Number of patterns evaluated by Pratt:4250 Total running time: 12 seconds