------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file CUTINASE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CUTINASE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CUTI_ALTBR 209 CUTI_ASCRA 223 CUTI_COLCA 228 CUTI_COLGL 224 CUTI_FUSSO 230 CUTI_MAGGR 162 Pratt run started at Thu Feb 6 19:14:22 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 82.9010 6( 6) W-x-Q-G-V-G-x(2)-Y-x-A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 2: 81.9010 9( 6) V-x(0,2)-Q-G-V-G-x(2)-Y-x-A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 3: 78.7310 6( 6) Q-G-V-G-x(2)-Y-x-A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 4: 74.5609 6( 6) G-V-G-x(2)-Y-x-A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 5: 70.3909 6( 6) V-G-x(2)-Y-x-A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 6: 66.2208 6( 6) G-x(2)-Y-x-A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 7: 62.0508 6( 6) Y-x-A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 8: 57.8807 6( 6) A-x-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 9: 57.3807 7( 6) A-x(0,1)-L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 10: 53.7107 6( 6) L-x(2)-N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 11: 49.5406 6( 6) N-x(2,3)-P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 12: 45.8706 6( 6) P-x-G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 13: 41.7005 6( 6) G-T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 14: 37.5305 6( 6) T-x(3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 15: 37.0305 7( 6) T-x(2,3)-A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 16: 36.5305 6( 6) C-x(3)-D-x-V-C-x-G-x-L-x(5)-H-x(0,1)-L-x(0,1)-Y 17: 36.5305 6( 6) G-x-V-L-x(3)-T-x-N-x-Q-N-x(1,2)-G-x(0,1)-I 18: 33.3604 6( 6) A-I-x-E-x(4)-F-x(2)-A-x(2)-K-C-P 19: 32.3604 6( 6) D-x-V-C-x-G-x-L-x(5)-H-x(0,1)-L-x(0,1)-Y 20: 32.3604 6( 6) V-L-x(3)-T-x-N-x-Q-N-x(1,2)-G-x(0,1)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 140.9714 6( 6) P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV] B 2: 139.0176 6( 6) Q-G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y C 3: 139.0176 6( 6) G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S D 4: 139.0176 6( 6) V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q E 5: 139.0176 6( 6) G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G F 6: 138.9386 6( 6) Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV] G 7: 138.0725 6( 6) W-[IV]-Q-G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G H 8: 136.8014 6( 6) G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV] I 9: 135.2198 6( 6) T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV]-x(2)-[DNR] J 10: 134.7686 6( 6) A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV] K 11: 133.7870 6( 6) L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS] L 12: 133.2563 6( 6) N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS] M 13: 132.0496 7( 6) A-x(0,1)-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV] N 14: 129.6776 9( 6) V-x(0,2)-Q-G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS] O 15: 129.4749 6( 6) A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV]-x(2)-[DNR]-x-[IV]-x-[GT] P 16: 128.2169 6( 6) G-[TV]-V-L-x-[AG]-x-T-x-N-x-Q-N-x(1,2)-G-x(0,1)-I-x-[DN]-[FY]-[EPS]-[AQT]-[DES]-[DKR]-x(2)-[IV]-[FY]-C-[ADEN]-x-[AGS]-D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-[FL]-[AL]-Y Q 17: 126.7197 7( 6) T-x(2,3)-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV]-x(2)-[DNR] R 18: 120.8750 6( 6) V-L-x-[AG]-x-T-x-N-x-Q-N-x(1,2)-G-x(0,1)-I-x-[DN]-[FY]-[EPS]-[AQT]-[DES]-[DKR]-x(2)-[IV]-[FY]-C-[ADEN]-x-[AGS]-D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-[FL]-[AL]-Y S 19: 84.2982 6( 6) C-[ADEN]-x-[AGS]-D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-x(0,1)-L-x(0,1)-Y-x(2)-[DE]-[AS]-x(3)-A-P-x-[FW]-L-x(3)-[IV] T 20: 75.2941 6( 6) D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-x(0,1)-L-x(0,1)-Y-x(2)-[DE]-[AS]-x(3)-A-P-x-[FW]-L-x(3)-[IV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 140.9714 6( 6) P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV] Occurences: 6(6) CUTI_ALTBR : 86- 135: venal PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAVmsNAIPgLSAA vqdqi CUTI_ASCRA : 102- 151: psnfl PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAVmaGAIPkLDAV rarvv CUTI_COLCA : 107- 156: snfii PeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAVmaSSISeLSST iqnqi CUTI_COLGL : 103- 152: asnfl PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAVmaGSISgLSTT iknqi CUTI_FUSSO : 103- 152: gdnal PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAALaaASIEdLDSA irdki CUTI_MAGGR : 39- 88: spnfl PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNAVSeMPAA vqdqi B 2: 139.0176 6( 6) Q-G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y Occurences: 6(6) CUTI_ALTBR : 70- 118: snvwv QGVGGPYtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGY sqgaa CUTI_ASCRA : 86- 134: dqiwv QGVGGPYtADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGY sqgta CUTI_COLCA : 90- 139: sqvwv QGVGGPYsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGY sqgta CUTI_COLGL : 87- 135: nnvwv QGVGGPYlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGY sqgta CUTI_FUSSO : 87- 135: dgvwi QGVGGAYrATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGY sqgaa CUTI_MAGGR : 23- 71: ndiwv QGVGDPYdAALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGY sqgta C 3: 139.0176 6( 6) G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S Occurences: 6(6) CUTI_ALTBR : 71- 119: nvwvq GVGGPYtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYS qgaav CUTI_ASCRA : 87- 135: qiwvq GVGGPYtADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYS qgtav CUTI_COLCA : 91- 140: qvwvq GVGGPYsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYS qgtav CUTI_COLGL : 88- 136: nvwvq GVGGPYlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYS qgtav CUTI_FUSSO : 88- 136: gvwiq GVGGAYrATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYS qgaal CUTI_MAGGR : 24- 72: diwvq GVGDPYdAALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYS qgtav D 4: 139.0176 6( 6) V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q Occurences: 6(6) CUTI_ALTBR : 72- 120: vwvqg VGGPYtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQ gaavm CUTI_ASCRA : 88- 136: iwvqg VGGPYtADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQ gtavm CUTI_COLCA : 92- 141: vwvqg VGGPYsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQ gtavm CUTI_COLGL : 89- 137: vwvqg VGGPYlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQ gtavm CUTI_FUSSO : 89- 137: vwiqg VGGAYrATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQ gaala CUTI_MAGGR : 25- 73: iwvqg VGDPYdAALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQ gtavm E 5: 139.0176 6( 6) G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G Occurences: 6(6) CUTI_ALTBR : 73- 121: wvqgv GGPYtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQG aavms CUTI_ASCRA : 89- 137: wvqgv GGPYtADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQG tavma CUTI_COLCA : 93- 142: wvqgv GGPYsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQG tavma CUTI_COLGL : 90- 138: wvqgv GGPYlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQG tavma CUTI_FUSSO : 90- 138: wiqgv GGAYrATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQG aalaa CUTI_MAGGR : 26- 74: wvqgv GDPYdAALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQG tavmf F 6: 138.9386 6( 6) Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV] Occurences: 6(6) CUTI_ALTBR : 76- 124: gvggp YtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAV msnai CUTI_ASCRA : 92- 140: gvggp YtADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAV magai CUTI_COLCA : 96- 145: gvggp YsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAV massi CUTI_COLGL : 93- 141: gvggp YlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAV magsi CUTI_FUSSO : 93- 141: gvgga YrATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAAL aaasi CUTI_MAGGR : 29- 77: gvgdp YdAALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAV mfnav G 7: 138.0725 6( 6) W-[IV]-Q-G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G Occurences: 6(6) CUTI_ALTBR : 68- 116: gasnv WVQGVGGPYtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAG gysqg CUTI_ASCRA : 84- 132: gadqi WVQGVGGPYtADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAG gysqg CUTI_COLCA : 88- 137: gasqv WVQGVGGPYsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAG gysqg CUTI_COLGL : 85- 133: gannv WVQGVGGPYlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSG gysqg CUTI_FUSSO : 85- 133: gkdgv WIQGVGGAYrATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAG gysqg CUTI_MAGGR : 21- 69: frndi WVQGVGDPYdAALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAG gysqg H 8: 136.8014 6( 6) G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV] Occurences: 6(6) CUTI_ALTBR : 88- 135: nalpa GTSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAVmsNAIPgLSAA vqdqi CUTI_ASCRA : 104- 151: nflpg GTSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAVmaGAIPkLDAV rarvv CUTI_COLCA : 109- 156: fiipe GTSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAVmaSSISeLSST iqnqi CUTI_COLGL : 105- 152: nflpd GTSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAVmaGSISgLSTT iknqi CUTI_FUSSO : 105- 152: nalpr GTSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAALaaASIEdLDSA irdki CUTI_MAGGR : 41- 88: nflpa GTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNAVSeMPAA vqdqi I 9: 135.2198 6( 6) T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV]-x(2)-[DNR] Occurences: 6(6) CUTI_ALTBR : 89- 138: alpag TSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAVmsNAIPgLSAAvqD qikgv CUTI_ASCRA : 105- 154: flpgg TSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAVmaGAIPkLDAVraR vvgtv CUTI_COLCA : 110- 159: iipeg TSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAVmaSSISeLSSTiqN qikgv CUTI_COLGL : 106- 155: flpdg TSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAVmaGSISgLSTTikN qikgv CUTI_FUSSO : 106- 155: alprg TSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAALaaASIEdLDSAirD kiagt CUTI_MAGGR : 42- 91: flpag TTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNAVSeMPAAvqD qikgv J 10: 134.7686 6( 6) A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV] Occurences: 6(6) CUTI_ALTBR : 78- 124: ggpyt AGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAV msnai CUTI_ASCRA : 94- 140: ggpyt ADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAV magai CUTI_COLCA : 98- 145: ggpys ADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAV massi CUTI_COLGL : 95- 141: ggpyl ADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAV magsi CUTI_FUSSO : 95- 141: ggayr ATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAAL aaasi CUTI_MAGGR : 31- 77: gdpyd AALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAV mfnav K 11: 133.7870 6( 6) L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS] Occurences: 6(6) CUTI_ALTBR : 80- 128: pytag LvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAVmsNA ipgls CUTI_ASCRA : 96- 144: pytad LpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAVmaGA ipkld CUTI_COLCA : 100- 149: pysad LaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAVmaSS isels CUTI_COLGL : 97- 145: pylad LaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAVmaGS isgls CUTI_FUSSO : 97- 145: ayrat LgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAALaaAS iedld CUTI_MAGGR : 33- 81: pydaa LsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNA vsemp L 12: 133.2563 6( 6) N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS] Occurences: 6(6) CUTI_ALTBR : 83- 130: aglve Nal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAVmsNAIP glsaa CUTI_ASCRA : 99- 146: adlps Nfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAVmaGAIP kldav CUTI_COLCA : 103- 151: adlas NfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAVmaSSIS elsst CUTI_COLGL : 100- 147: adlas Nfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAVmaGSIS glstt CUTI_FUSSO : 100- 147: atlgd Nal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAALaaASIE dldsa CUTI_MAGGR : 36- 83: aalsp Nfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNAVS empaa M 13: 132.0496 7( 6) A-x(0,1)-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV] Occurences: 7(6) CUTI_ALTBR : 78- 124: ggpyt AgLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItAGGYSQGAAV msnai CUTI_ASCRA : 94- 140: ggpyt AdLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvAGGYSQGTAV magai CUTI_COLCA : 98- 145: ggpys AdLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvAGGYSQGTAV massi CUTI_COLGL : 95- 141: ggpyl AdLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvSGGYSQGTAV magsi CUTI_FUSSO : 95- 141: ggayr AtLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiAGGYSQGAAL aaasi CUTI_MAGGR : 31- 77: gdpyd AaLsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAV mfnav CUTI_MAGGR : 32- 77: dpyda A-LsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvAGGYSQGTAV mfnav N 14: 129.6776 9( 6) V-x(0,2)-Q-G-V-G-[DG]-[AP]-Y-x-A-[ADGT]-L-x-[DEPS]-N-x(2,3)-P-x-G-T-[ST]-[QRS]-[AGSV]-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS] Occurences: 9(6) CUTI_ALTBR : 67- 115: ygasn VwvQGVGGPYtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItA ggysq CUTI_ALTBR : 69- 115: asnvw V--QGVGGPYtAGLvENal-PaGTSQAAIREaqrLFNlAASKCPNTPItA ggysq CUTI_ASCRA : 85- 131: adqiw V--QGVGGPYtADLpSNfl-PgGTSQSAINEavrLFNeANTKCPSTPIvA ggysq CUTI_COLCA : 87- 136: ygasq VwvQGVGGPYsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvA ggysq CUTI_COLCA : 89- 136: asqvw V--QGVGGPYsADLaSNfiiPeGTSRVAINEakrLFTlANTKCPNSAVvA ggysq CUTI_COLGL : 84- 132: ygann VwvQGVGGPYlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvS ggysq CUTI_COLGL : 86- 132: annvw V--QGVGGPYlADLaSNfl-PdGTSSAAINEarrLFTlANTKCPNAAIvS ggysq CUTI_FUSSO : 84- 132: fgkdg VwiQGVGGAYrATLgDNal-PrGTSSAAIREmlgLFQqANTKCPDATLiA ggysq CUTI_MAGGR : 22- 68: rndiw V--QGVGDPYdAALsPNfl-PaGTTQGAIDEakrMFTlANTKCPNAAVvA ggysq O 15: 129.4749 6( 6) A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV]-x(2)-[DNR]-x-[IV]-x-[GT] Occurences: 6(6) CUTI_ALTBR : 93- 142: gtsqa AIREaqrLFNlAASKCPNTPItAGGYSQGAAVmsNAIPgLSAAvqDqIkG vvlfg CUTI_ASCRA : 109- 158: gtsqs AINEavrLFNeANTKCPSTPIvAGGYSQGTAVmaGAIPkLDAVraRvVgT vlfgy CUTI_COLCA : 114- 163: gtsrv AINEakrLFTlANTKCPNSAVvAGGYSQGTAVmaSSISeLSSTiqNqIkG vvlsa CUTI_COLGL : 110- 159: gtssa AINEarrLFTlANTKCPNAAIvSGGYSQGTAVmaGSISgLSTTikNqIkG vvlfg CUTI_FUSSO : 110- 159: gtssa AIREmlgLFQqANTKCPDATLiAGGYSQGAALaaASIEdLDSAirDkIaG tvlfg CUTI_MAGGR : 46- 95: gttqg AIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNAVSeMPAAvqDqIkG vvlfg P 16: 128.2169 6( 6) G-[TV]-V-L-x-[AG]-x-T-x-N-x-Q-N-x(1,2)-G-x(0,1)-I-x-[DN]-[FY]-[EPS]-[AQT]-[DES]-[DKR]-x(2)-[IV]-[FY]-C-[ADEN]-x-[AGS]-D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-[FL]-[AL]-Y Occurences: 6(6) CUTI_ALTBR : 142- 190: qdqik GVVLfGyTkNlQNg-GrIpNFPTSKttIYCEtGDLVCnGTLIItPAHLLY sdeaa CUTI_ASCRA : 157- 205: rarvv GTVLfGyTqNqQNnkG-IkDYPQEDlqVYCEvGDLVCdGTLIItVSHFLY leeaa CUTI_COLCA : 163- 211: qnqik GVVLsAiTkNlQNl-GrIpNFSTSKteVYCAlADAVCyGTLFIlPAHFLY qadaa CUTI_COLGL : 159- 207: knqik GVVLfGyTkNlQNl-GrIpNFETSKteVYCDiADAVCyGTLFIlPAHFLY qtdaa CUTI_FUSSO : 159- 207: rdkia GTVLfGyTkNlQNr-GrIpNYPADRtkVFCNtGDLVCtGSLIVaAPHLAY gpdar CUTI_MAGGR : 95- 143: qdqik GVVLfGyTkNlQNr-GrIpDFPTEKteVYCNaSDAVCfGTLFLlPAHFLY ttess Q 17: 126.7197 7( 6) T-x(2,3)-A-I-[DNR]-E-x(3)-[LM]-F-[NQT]-x-A-[AN]-[ST]-K-C-P-[DNS]-[AST]-[APT]-[ILV]-x-[AS]-G-G-Y-S-Q-G-[AT]-A-[LV]-x(2)-[AGNS]-[AS]-[IV]-[EPS]-x-[LM]-[DPS]-[AST]-[ATV]-x(2)-[DNR] Occurences: 7(6) CUTI_ALTBR : 89- 138: alpag TsqaAIREaqrLFNlAASKCPNTPItAGGYSQGAAVmsNAIPgLSAAvqD qikgv CUTI_ASCRA : 105- 154: flpgg TsqsAINEavrLFNeANTKCPSTPIvAGGYSQGTAVmaGAIPkLDAVraR vvgtv CUTI_COLCA : 110- 159: iipeg TsrvAINEakrLFTlANTKCPNSAVvAGGYSQGTAVmaSSISeLSSTiqN qikgv CUTI_COLGL : 106- 155: flpdg TssaAINEarrLFTlANTKCPNAAIvSGGYSQGTAVmaGSISgLSTTikN qikgv CUTI_FUSSO : 106- 155: alprg TssaAIREmlgLFQqANTKCPDATLiAGGYSQGAALaaASIEdLDSAirD kiagt CUTI_MAGGR : 42- 91: flpag TtqgAIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNAVSeMPAAvqD qikgv CUTI_MAGGR : 43- 91: lpagt Tqg-AIDEakrMFTlANTKCPNAAVvAGGYSQGTAVmfNAVSeMPAAvqD qikgv R 18: 120.8750 6( 6) V-L-x-[AG]-x-T-x-N-x-Q-N-x(1,2)-G-x(0,1)-I-x-[DN]-[FY]-[EPS]-[AQT]-[DES]-[DKR]-x(2)-[IV]-[FY]-C-[ADEN]-x-[AGS]-D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-[FL]-[AL]-Y Occurences: 6(6) CUTI_ALTBR : 144- 190: qikgv VLfGyTkNlQNg-GrIpNFPTSKttIYCEtGDLVCnGTLIItPAHLLY sdeaa CUTI_ASCRA : 159- 205: rvvgt VLfGyTqNqQNnkG-IkDYPQEDlqVYCEvGDLVCdGTLIItVSHFLY leeaa CUTI_COLCA : 165- 211: qikgv VLsAiTkNlQNl-GrIpNFSTSKteVYCAlADAVCyGTLFIlPAHFLY qadaa CUTI_COLGL : 161- 207: qikgv VLfGyTkNlQNl-GrIpNFETSKteVYCDiADAVCyGTLFIlPAHFLY qtdaa CUTI_FUSSO : 161- 207: kiagt VLfGyTkNlQNr-GrIpNYPADRtkVFCNtGDLVCtGSLIVaAPHLAY gpdar CUTI_MAGGR : 97- 143: qikgv VLfGyTkNlQNr-GrIpDFPTEKteVYCNaSDAVCfGTLFLlPAHFLY ttess S 19: 84.2982 6( 6) C-[ADEN]-x-[AGS]-D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-x(0,1)-L-x(0,1)-Y-x(2)-[DE]-[AS]-x(3)-A-P-x-[FW]-L-x(3)-[IV] Occurences: 6(6) CUTI_ALTBR : 170- 206: kttiy CEtGDLVCnGTLIItPAHlL-YsdEAavqAPtFLraqI dsa CUTI_ALTBR : 170- 206: kttiy CEtGDLVCnGTLIItPAH-LlYsdEAavqAPtFLraqI dsa CUTI_ASCRA : 185- 221: dlqvy CEvGDLVCdGTLIItVSHfL-YleEAagpAPeFLkskI ga CUTI_COLCA : 191- 227: ktevy CAlADAVCyGTLFIlPAHfL-YqaDAatsAPrFLaarI g CUTI_COLGL : 187- 223: ktevy CDiADAVCyGTLFIlPAHfL-YqtDAavaAPrFLqarI g CUTI_FUSSO : 187- 223: rtkvf CNtGDLVCtGSLIVaAPH-LaYgpDArgpAPeFLiekV ravrg CUTI_MAGGR : 123- 159: ktevy CNaSDAVCfGTLFLlPAHfL-YttESsiaAPnWLirqI raa T 20: 75.2941 6( 6) D-[AL]-V-C-x-G-[ST]-L-[FI]-[ILV]-x-[APV]-[APS]-H-x(0,1)-L-x(0,1)-Y-x(2)-[DE]-[AS]-x(3)-A-P-x-[FW]-L-x(3)-[IV] Occurences: 6(6) CUTI_ALTBR : 174- 206: ycetg DLVCnGTLIItPAHlL-YsdEAavqAPtFLraqI dsa CUTI_ALTBR : 174- 206: ycetg DLVCnGTLIItPAH-LlYsdEAavqAPtFLraqI dsa CUTI_ASCRA : 189- 221: ycevg DLVCdGTLIItVSHfL-YleEAagpAPeFLkskI ga CUTI_COLCA : 195- 227: ycala DAVCyGTLFIlPAHfL-YqaDAatsAPrFLaarI g CUTI_COLGL : 191- 223: ycdia DAVCyGTLFIlPAHfL-YqtDAavaAPrFLqarI g CUTI_FUSSO : 191- 223: fcntg DLVCtGSLIVaAPH-LaYgpDArgpAPeFLiekV ravrg CUTI_MAGGR : 127- 159: ycnas DAVCfGTLFLlPAHfL-YttESsiaAPnWLirqI raa Number of patterns evaluated by Pratt:4928 Total running time: 2 seconds