------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file CU2_MONOOXYGENASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CU2_MONOOXYGENASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AMD1_XENLA 400 AMD2_XENLA 875 AMD_BOVIN 972 AMD_HUMAN 974 AMD_RAT 976 DOPO_BOVIN 610 DOPO_HUMAN 603 Pratt run started at Thu Feb 6 19:13:55 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.5406 9( 7) A-x(1,2)-A-x(2)-A-x(5)-P-x(3)-G-x(3)-G-G-x(3)-S-x(4)-L-x-V-H-Y 2: 49.5406 7( 7) A-x(0,1)-A-x(2)-A-x(5)-P-x(3)-G-x(3)-G-G-x(3)-S-x(4)-L-x-V-H-Y 3: 49.0406 7( 7) D-x(5)-C-x(2,3)-T-x(2,3)-R-x(3)-T-x(2)-G-x(5)-E-M-C-x(2)-Y-x(2)-Y-Y 4: 49.0406 7( 7) H-x-F-A-x(3)-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-x(5)-R-x-G-x(4)-I 5: 49.0406 9( 7) A-x(1,2)-A-x(1,2)-A-x(5)-P-x(3)-G-x(3)-G-G-x(3)-S-x(4)-L-x-V-H-Y 6: 49.0406 7( 7) A-x(0,1)-A-x(1,2)-A-x(5)-P-x(3)-G-x(3)-G-G-x(3)-S-x(4)-L-x-V-H-Y 7: 44.8706 7( 7) C-x(2,3)-T-x(2,3)-R-x(3)-T-x(2)-G-x(5)-E-M-C-x(2)-Y-x(2)-Y-Y 8: 44.8706 7( 7) F-A-x(3)-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-x(5)-R-x-G-x(4)-I 9: 41.2005 7( 7) T-x(2,3)-R-x(3)-T-x(2)-G-x(5)-E-M-C-x(2)-Y-x(2)-Y-Y 10: 40.7005 7( 7) R-x(3)-T-x(2)-G-x(0,1)-G-x(3,4)-E-M-C-x(2)-Y-x(2)-Y-Y 11: 40.7005 7( 7) A-x(3)-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-x(5)-R-x-G-x(4)-I 12: 37.5305 7( 7) P-x(3)-G-x(3)-G-G-x(3)-S-x(4)-L-x-V-H-Y 13: 37.0305 7( 7) P-x(3)-G-x(2,3)-G-G-x(3)-S-x(4)-L-x-V-H-Y 14: 36.5305 7( 7) T-x(2)-G-x(0,1)-G-x(3,4)-E-M-C-x(2)-Y-x(2)-Y-Y 15: 36.5305 7( 7) T-x(1,2)-G-G-x(4)-E-x(0,1)-M-C-x(2)-Y-x(2)-Y-Y 16: 36.5305 7( 7) H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-x(5)-R-x-G-x(4)-I 17: 33.3604 7( 7) G-x(3)-G-G-x(3)-S-x(4)-L-x-V-H-Y 18: 32.8604 7( 7) G-G-x(4)-E-x(0,1)-M-C-x(2)-Y-x(2)-Y-Y 19: 32.8604 7( 7) G-G-x(4,5)-E-M-C-x(2)-Y-x(2)-Y-Y 20: 32.8604 7( 7) G-x(2,3)-G-G-x(3)-S-x(4)-L-x-V-H-Y Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 118.5102 7( 7) A-x(0,1)-A-x(2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] B 2: 118.0102 9( 7) A-x(1,2)-A-x(1,2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] C 3: 118.0102 7( 7) A-x(0,1)-A-x(1,2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] D 4: 115.2139 9( 7) A-x(1,2)-A-x(2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST] E 5: 108.9175 7( 7) H-[IPV]-F-A-x-[QR]-[LV]-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV] F 6: 105.3026 7( 7) D-[ILV]-[IL]-[AI]-[AT]-[RS]-C-x(2,3)-T-x(2,3)-R-x(2)-[AV]-T-x-[GI]-G-x-[GT]-x(2)-[DE]-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV] G 7: 104.7145 7( 7) F-A-x-[QR]-[LV]-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV]-[STV] H 8: 103.7320 7( 7) A-x-[QR]-[LV]-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV]-[STV]-x-[GV] I 9: 101.7928 7( 7) H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV]-[STV]-x-[GV]-x-[ILP]-[GIL]-[AD] J 10: 91.9586 7( 7) G-G-x-[AGS]-x(2)-E-x(0,1)-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS]-x-[DEP]-[IV] K 11: 91.3864 7( 7) R-x(2)-[AV]-T-x-[GI]-G-x(0,1)-G-x(3,4)-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP] L 12: 91.3533 7( 7) C-x(2,3)-T-x(2,3)-R-x(2)-[AV]-T-x-[GI]-G-x-[GT]-x(2)-[DE]-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK] M 13: 90.5208 7( 7) T-x-[GI]-G-x(0,1)-G-x(3,4)-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS] N 14: 89.8179 7( 7) T-x(1,2)-G-G-x-[AGS]-x(2)-E-x(0,1)-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS] O 15: 89.3652 7( 7) G-G-x(4,5)-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS]-x-[DEP]-[IV] P 16: 88.6675 7( 7) T-x(2,3)-R-x(3)-T-x-[GI]-G-x-[GT]-x(2)-[DE]-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F Q 17: 87.1736 7( 7) P-x(3)-G-x(3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] R 18: 86.6736 7( 7) P-x(3)-G-x(2,3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] S 19: 83.0035 7( 7) G-x(3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] T 20: 82.5035 7( 7) G-x(2,3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 118.5102 7( 7) A-x(0,1)-A-x(2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Occurences: 7(7) AMD1_XENLA : 136- 184: ssimy AwAknApPtklPEGVGFrVGGkSGSRYFvLQVHYgNVkAFqDkhKDCTG vtvrv AMD2_XENLA : 138- 186: ssimy AwAknApPtklPEGVGFqVGGkSGSRYFvLQVHYgDVkAFqDkhKDCTG vtvri AMD_BOVIN : 135- 183: anily AwArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vslhl AMD_HUMAN : 135- 183: anily AwArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnnKDCSG vslhl AMD_RAT : 140- 188: anily AwArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vsvhl DOPO_BOVIN : 294- 342: rhvla AwAlgAkAfyyPEEAGLaFGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_HUMAN : 287- 335: rhvla AwAlgAkAfyyPEEAGLaFGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt B 2: 118.0102 9( 7) A-x(1,2)-A-x(1,2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Occurences: 9(7) AMD1_XENLA : 136- 184: ssimy Aw-AknApPtklPEGVGFrVGGkSGSRYFvLQVHYgNVkAFqDkhKDCTG vtvrv AMD2_XENLA : 138- 186: ssimy Aw-AknApPtklPEGVGFqVGGkSGSRYFvLQVHYgDVkAFqDkhKDCTG vtvri AMD_BOVIN : 135- 183: anily Aw-ArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vslhl AMD_HUMAN : 135- 183: anily Aw-ArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnnKDCSG vslhl AMD_RAT : 140- 188: anily Aw-ArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vsvhl DOPO_BOVIN : 293- 342: crhvl AawAlgAkAfyyPEEAGLaFGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_BOVIN : 294- 342: rhvla Aw-AlgAkAfyyPEEAGLaFGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_HUMAN : 286- 335: crhvl AawAlgAkAfyyPEEAGLaFGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt DOPO_HUMAN : 287- 335: rhvla Aw-AlgAkAfyyPEEAGLaFGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt C 3: 118.0102 7( 7) A-x(0,1)-A-x(1,2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Occurences: 7(7) AMD1_XENLA : 136- 184: ssimy AwAknApPtklPEGVGFrVGGkSGSRYFvLQVHYgNVkAFqDkhKDCTG vtvrv AMD2_XENLA : 138- 186: ssimy AwAknApPtklPEGVGFqVGGkSGSRYFvLQVHYgDVkAFqDkhKDCTG vtvri AMD_BOVIN : 135- 183: anily AwArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vslhl AMD_HUMAN : 135- 183: anily AwArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnnKDCSG vslhl AMD_RAT : 140- 188: anily AwArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vsvhl DOPO_BOVIN : 294- 342: rhvla AwAlgAkAfyyPEEAGLaFGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_HUMAN : 287- 335: rhvla AwAlgAkAfyyPEEAGLaFGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt D 4: 115.2139 9( 7) A-x(1,2)-A-x(2)-A-x-[AP]-x(3)-P-[EK]-[EG]-[AV]-G-[FL]-x-[FV]-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST] Occurences: 9(7) AMD1_XENLA : 136- 183: ssimy Aw-AknApPtklPEGVGFrVGGkSGSRYFvLQVHYgNVkAFqDkhKDCT gvtvr AMD2_XENLA : 138- 185: ssimy Aw-AknApPtklPEGVGFqVGGkSGSRYFvLQVHYgDVkAFqDkhKDCT gvtvr AMD_BOVIN : 135- 182: anily Aw-ArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCS gvslh AMD_HUMAN : 135- 182: anily Aw-ArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnnKDCS gvslh AMD_RAT : 140- 187: anily Aw-ArnApPtrlPKGVGFrVGGeTGSKYFvLQVHYgDIsAFrDnhKDCS gvsvh DOPO_BOVIN : 293- 341: crhvl AawAlgAkAfyyPEEAGLaFGGpGSSRFLrLEVHYhNPlVItGrrDSSG irlyy DOPO_BOVIN : 294- 341: rhvla Aw-AlgAkAfyyPEEAGLaFGGpGSSRFLrLEVHYhNPlVItGrrDSSG irlyy DOPO_HUMAN : 286- 334: crhvl AawAlgAkAfyyPEEAGLaFGGpGSSRYLrLEVHYhNPlVIeGrnDSSG irlyy DOPO_HUMAN : 287- 334: rhvla Aw-AlgAkAfyyPEEAGLaFGGpGSSRYLrLEVHYhNPlVIeGrnDSSG irlyy E 5: 108.9175 7( 7) H-[IPV]-F-A-x-[QR]-[LV]-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV] Occurences: 7(7) AMD1_XENLA : 231- 279: nrpti HPFAyRVHTHqL-GqvVSGfrVRhGkwslIGRQSPqlPQaFyPVehPvEI spgdi AMD2_XENLA : 233- 281: nrpti HPFAyRVHTHqL-GqvVSGfrVRhGkwtlIGRQSPqlPQaFyPVehPlEI spgdi AMD_BOVIN : 230- 278: kkypm HVFAyRVHTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVehPvDV sfgdi AMD_HUMAN : 230- 278: knypm HVFAyRVHTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVghPvDV sfgdl AMD_RAT : 235- 283: kmypm HVFAyRVHTHhL-GkvVSGyrVRnGqwtlIGRQNPqlPQaFyPVehPvDV tfgdi DOPO_BOVIN : 398- 446: pasgi HIFAsQLHTH-LtGrkVVTvlARdGreteIVNRDNhySPhFqEIrmLkKV vsvqp DOPO_HUMAN : 391- 439: ppsgi HIFAsQLHTH-LtGrkVVTvlVRdGreweIVNQDNhySPhFqEIrmLkKV vsvhp F 6: 105.3026 7( 7) D-[ILV]-[IL]-[AI]-[AT]-[RS]-C-x(2,3)-T-x(2,3)-R-x(2)-[AV]-T-x-[GI]-G-x-[GT]-x(2)-[DE]-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV] Occurences: 7(7) AMD1_XENLA : 283- 331: eispg DIIATRClf-TgkgRtsATyIGgTsnDEMCNlYImYYmDAahAtSymTCV qtgep AMD2_XENLA : 285- 333: eispg DIIATRClf-TgkgRmsATyIGgTakDEMCNlYImYYmDAahAtSymTCV qtgnp AMD_BOVIN : 282- 330: dvsfg DILAARCvf-TgegRteVThIGgTssDEMCNlYImYYmEAkhAvSfmTCT qnvap AMD_HUMAN : 282- 330: dvsfg DLLAARCvf-TgegRteAThIGgTssDEMCNlYImYYmEAkhAvSfmTCT qnvap AMD_RAT : 287- 335: dvtfg DILAARCvf-TgegRteAThIGgTssDEMCNlYImYYmEAkyAlSfmTCT knvap DOPO_BOVIN : 453- 501: svqpg DVLITSCtynTed-RrlATvGGfGilEEMCVnYVhYYpQTqlElCksAVD pgflh DOPO_HUMAN : 446- 494: svhpg DVLITSCtynTed-RelATvGGfGilEEMCVnYVhYYpQTqlElCktAVD agflq G 7: 104.7145 7( 7) F-A-x-[QR]-[LV]-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV]-[STV] Occurences: 7(7) AMD1_XENLA : 233- 280: ptihp FAyRVHTHqL-GqvVSGfrVRhGkwslIGRQSPqlPQaFyPVehPvEIS pgdii AMD2_XENLA : 235- 282: ptihp FAyRVHTHqL-GqvVSGfrVRhGkwtlIGRQSPqlPQaFyPVehPlEIS pgdii AMD_BOVIN : 232- 279: ypmhv FAyRVHTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVehPvDVS fgdil AMD_HUMAN : 232- 279: ypmhv FAyRVHTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVghPvDVS fgdll AMD_RAT : 237- 284: ypmhv FAyRVHTHhL-GkvVSGyrVRnGqwtlIGRQNPqlPQaFyPVehPvDVT fgdil DOPO_BOVIN : 400- 447: sgihi FAsQLHTH-LtGrkVVTvlARdGreteIVNRDNhySPhFqEIrmLkKVV svqpg DOPO_HUMAN : 393- 440: sgihi FAsQLHTH-LtGrkVVTvlVRdGreweIVNQDNhySPhFqEIrmLkKVV svhpg H 8: 103.7320 7( 7) A-x-[QR]-[LV]-H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV]-[STV]-x-[GV] Occurences: 7(7) AMD1_XENLA : 234- 282: tihpf AyRVHTHqL-GqvVSGfrVRhGkwslIGRQSPqlPQaFyPVehPvEISpG diiat AMD2_XENLA : 236- 284: tihpf AyRVHTHqL-GqvVSGfrVRhGkwtlIGRQSPqlPQaFyPVehPlEISpG diiat AMD_BOVIN : 233- 281: pmhvf AyRVHTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVehPvDVSfG dilaa AMD_HUMAN : 233- 281: pmhvf AyRVHTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVghPvDVSfG dllaa AMD_RAT : 238- 286: pmhvf AyRVHTHhL-GkvVSGyrVRnGqwtlIGRQNPqlPQaFyPVehPvDVTfG dilaa DOPO_BOVIN : 401- 449: gihif AsQLHTH-LtGrkVVTvlARdGreteIVNRDNhySPhFqEIrmLkKVVsV qpgdv DOPO_HUMAN : 394- 442: gihif AsQLHTH-LtGrkVVTvlVRdGreweIVNQDNhySPhFqEIrmLkKVVsV hpgdv I 9: 101.7928 7( 7) H-T-H-x(0,1)-L-x(0,1)-G-x(2)-V-[SV]-[GT]-x(2)-[AV]-R-x-G-x(4)-I-[GV]-[NR]-[QR]-[DNS]-[NP]-x(2)-[PS]-[PQ]-x-F-x-[EP]-[IV]-x(2)-[LP]-x-[DEK]-[IV]-[STV]-x-[GV]-x-[ILP]-[GIL]-[AD] Occurences: 7(7) AMD1_XENLA : 238- 286: fayrv HTHqL-GqvVSGfrVRhGkwslIGRQSPqlPQaFyPVehPvEISpGdIIA trclf AMD2_XENLA : 240- 288: fayrv HTHqL-GqvVSGfrVRhGkwtlIGRQSPqlPQaFyPVehPlEISpGdIIA trclf AMD_BOVIN : 237- 285: fayrv HTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVehPvDVSfGdILA arcvf AMD_HUMAN : 237- 285: fayrv HTHhL-GkvVSGyrVRnGqwtlIGRQSPqlPQaFyPVghPvDVSfGdLLA arcvf AMD_RAT : 242- 290: fayrv HTHhL-GkvVSGyrVRnGqwtlIGRQNPqlPQaFyPVehPvDVTfGdILA arcvf DOPO_BOVIN : 405- 453: fasql HTH-LtGrkVVTvlARdGreteIVNRDNhySPhFqEIrmLkKVVsVqPGD vlits DOPO_HUMAN : 398- 446: fasql HTH-LtGrkVVTvlVRdGreweIVNQDNhySPhFqEIrmLkKVVsVhPGD vlits J 10: 91.9586 7( 7) G-G-x-[AGS]-x(2)-E-x(0,1)-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS]-x-[DEP]-[IV] Occurences: 7(7) AMD1_XENLA : 303- 350: satyi GGtSndE-MCNlYImYYmDAahAtSymTCVqTgepKlFqnIPeiANvPI pvspd AMD2_XENLA : 305- 352: satyi GGtAkdE-MCNlYImYYmDAahAtSymTCVqTgnpKlFenIPeiANvPI pvspd AMD_BOVIN : 302- 349: evthi GGtSsdE-MCNlYImYYmEAkhAvSfmTCTqNvapDiFrtIPpeANiPI pvksd AMD_HUMAN : 302- 349: eathi GGtSsdE-MCNlYImYYmEAkhAvSfmTCTqNvapDmFrtIPpeANiPI pvksd AMD_RAT : 307- 354: eathi GGtSsdE-MCNlYImYYmEAkyAlSfmTCTkNvapDmFrtIPaeANiPI pvkpd DOPO_BOVIN : 472- 520: rlatv GGfGilEeMCVnYVhYYpQTqlElCksAVDpGflhKyFrlVNrfNSeEV ctcpq DOPO_HUMAN : 465- 513: elatv GGfGilEeMCVnYVhYYpQTqlElCktAVDaGflqKyFhlINrfNNeDV ctcpq K 11: 91.3864 7( 7) R-x(2)-[AV]-T-x-[GI]-G-x(0,1)-G-x(3,4)-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP] Occurences: 7(7) AMD1_XENLA : 296- 343: ftgkg RtsATyIG-GtsndEMCNlYImYYmDAahAtSymTCVqTgepKlFqnIP eianv AMD2_XENLA : 298- 345: ftgkg RmsATyIG-GtakdEMCNlYImYYmDAahAtSymTCVqTgnpKlFenIP eianv AMD_BOVIN : 295- 342: ftgeg RteVThIG-GtssdEMCNlYImYYmEAkhAvSfmTCTqNvapDiFrtIP peani AMD_HUMAN : 295- 342: ftgeg RteAThIG-GtssdEMCNlYImYYmEAkhAvSfmTCTqNvapDmFrtIP peani AMD_RAT : 300- 347: ftgeg RteAThIG-GtssdEMCNlYImYYmEAkyAlSfmTCTkNvapDmFrtIP aeani DOPO_BOVIN : 466- 513: ynted RrlATvGGfGile-EMCVnYVhYYpQTqlElCksAVDpGflhKyFrlVN rfnse DOPO_HUMAN : 459- 506: ynted RelATvGGfGile-EMCVnYVhYYpQTqlElCktAVDaGflqKyFhlIN rfnne L 12: 91.3533 7( 7) C-x(2,3)-T-x(2,3)-R-x(2)-[AV]-T-x-[GI]-G-x-[GT]-x(2)-[DE]-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK] Occurences: 7(7) AMD1_XENLA : 289- 337: iiatr Clf-TgkgRtsATyIGgTsnDEMCNlYImYYmDAahAtSymTCVqTgepK lfqni AMD2_XENLA : 291- 339: iiatr Clf-TgkgRmsATyIGgTakDEMCNlYImYYmDAahAtSymTCVqTgnpK lfeni AMD_BOVIN : 288- 336: ilaar Cvf-TgegRteVThIGgTssDEMCNlYImYYmEAkhAvSfmTCTqNvapD ifrti AMD_HUMAN : 288- 336: llaar Cvf-TgegRteAThIGgTssDEMCNlYImYYmEAkhAvSfmTCTqNvapD mfrti AMD_RAT : 293- 341: ilaar Cvf-TgegRteAThIGgTssDEMCNlYImYYmEAkyAlSfmTCTkNvapD mfrti DOPO_BOVIN : 459- 507: vlits CtynTed-RrlATvGGfGilEEMCVnYVhYYpQTqlElCksAVDpGflhK yfrlv DOPO_HUMAN : 452- 500: vlits CtynTed-RelATvGGfGilEEMCVnYVhYYpQTqlElCktAVDaGflqK yfhli M 13: 90.5208 7( 7) T-x-[GI]-G-x(0,1)-G-x(3,4)-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS] Occurences: 7(7) AMD1_XENLA : 300- 347: grtsa TyIG-GtsndEMCNlYImYYmDAahAtSymTCVqTgepKlFqnIPeiAN vpipv AMD2_XENLA : 302- 349: grmsa TyIG-GtakdEMCNlYImYYmDAahAtSymTCVqTgnpKlFenIPeiAN vpipv AMD_BOVIN : 299- 346: grtev ThIG-GtssdEMCNlYImYYmEAkhAvSfmTCTqNvapDiFrtIPpeAN ipipv AMD_HUMAN : 299- 346: grtea ThIG-GtssdEMCNlYImYYmEAkhAvSfmTCTqNvapDmFrtIPpeAN ipipv AMD_RAT : 304- 351: grtea ThIG-GtssdEMCNlYImYYmEAkyAlSfmTCTkNvapDmFrtIPaeAN ipipv DOPO_BOVIN : 470- 517: drrla TvGGfGile-EMCVnYVhYYpQTqlElCksAVDpGflhKyFrlVNrfNS eevct DOPO_HUMAN : 463- 510: drela TvGGfGile-EMCVnYVhYYpQTqlElCktAVDaGflqKyFhlINrfNN edvct N 14: 89.8179 7( 7) T-x(1,2)-G-G-x-[AGS]-x(2)-E-x(0,1)-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS] Occurences: 7(7) AMD1_XENLA : 300- 347: grtsa TyiGGtSndE-MCNlYImYYmDAahAtSymTCVqTgepKlFqnIPeiAN vpipv AMD2_XENLA : 302- 349: grmsa TyiGGtAkdE-MCNlYImYYmDAahAtSymTCVqTgnpKlFenIPeiAN vpipv AMD_BOVIN : 299- 346: grtev ThiGGtSsdE-MCNlYImYYmEAkhAvSfmTCTqNvapDiFrtIPpeAN ipipv AMD_HUMAN : 299- 346: grtea ThiGGtSsdE-MCNlYImYYmEAkhAvSfmTCTqNvapDmFrtIPpeAN ipipv AMD_RAT : 304- 351: grtea ThiGGtSsdE-MCNlYImYYmEAkyAlSfmTCTkNvapDmFrtIPaeAN ipipv DOPO_BOVIN : 470- 517: drrla Tv-GGfGilEeMCVnYVhYYpQTqlElCksAVDpGflhKyFrlVNrfNS eevct DOPO_HUMAN : 463- 510: drela Tv-GGfGilEeMCVnYVhYYpQTqlElCktAVDaGflqKyFhlINrfNN edvct O 15: 89.3652 7( 7) G-G-x(4,5)-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F-x(2)-[IV]-[NP]-x(2)-[AN]-[NS]-x-[DEP]-[IV] Occurences: 7(7) AMD1_XENLA : 303- 350: satyi GGtsnd-EMCNlYImYYmDAahAtSymTCVqTgepKlFqnIPeiANvPI pvspd AMD2_XENLA : 305- 352: satyi GGtakd-EMCNlYImYYmDAahAtSymTCVqTgnpKlFenIPeiANvPI pvspd AMD_BOVIN : 302- 349: evthi GGtssd-EMCNlYImYYmEAkhAvSfmTCTqNvapDiFrtIPpeANiPI pvksd AMD_HUMAN : 302- 349: eathi GGtssd-EMCNlYImYYmEAkhAvSfmTCTqNvapDmFrtIPpeANiPI pvksd AMD_RAT : 307- 354: eathi GGtssd-EMCNlYImYYmEAkyAlSfmTCTkNvapDmFrtIPaeANiPI pvkpd DOPO_BOVIN : 472- 520: rlatv GGfgileEMCVnYVhYYpQTqlElCksAVDpGflhKyFrlVNrfNSeEV ctcpq DOPO_HUMAN : 465- 513: elatv GGfgileEMCVnYVhYYpQTqlElCktAVDaGflqKyFhlINrfNNeDV ctcpq P 16: 88.6675 7( 7) T-x(2,3)-R-x(3)-T-x-[GI]-G-x-[GT]-x(2)-[DE]-E-M-C-[NV]-x-Y-[IV]-x-Y-Y-x-[DEQ]-[AT]-x(2)-[AE]-x-[CS]-x(2)-[AT]-[CV]-[DTV]-x-[GNT]-x(3)-[DK]-x-F Occurences: 7(7) AMD1_XENLA : 292- 339: trclf TgkgRtsaTyIGgTsnDEMCNlYImYYmDAahAtSymTCVqTgepKlF qnipe AMD2_XENLA : 294- 341: trclf TgkgRmsaTyIGgTakDEMCNlYImYYmDAahAtSymTCVqTgnpKlF enipe AMD_BOVIN : 291- 338: arcvf TgegRtevThIGgTssDEMCNlYImYYmEAkhAvSfmTCTqNvapDiF rtipp AMD_HUMAN : 291- 338: arcvf TgegRteaThIGgTssDEMCNlYImYYmEAkhAvSfmTCTqNvapDmF rtipp AMD_RAT : 296- 343: arcvf TgegRteaThIGgTssDEMCNlYImYYmEAkyAlSfmTCTkNvapDmF rtipa DOPO_BOVIN : 463- 509: sctyn Ted-RrlaTvGGfGilEEMCVnYVhYYpQTqlElCksAVDpGflhKyF rlvnr DOPO_HUMAN : 456- 502: sctyn Ted-RelaTvGGfGilEEMCVnYVhYYpQTqlElCktAVDaGflqKyF hlinr Q 17: 87.1736 7( 7) P-x(3)-G-x(3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Occurences: 7(7) AMD1_XENLA : 147- 184: pptkl PegvGfrvGGkSGSRYFvLQVHYgNVkAFqDkhKDCTG vtvrv AMD2_XENLA : 149- 186: pptkl PegvGfqvGGkSGSRYFvLQVHYgDVkAFqDkhKDCTG vtvri AMD_BOVIN : 146- 183: pptrl PkgvGfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vslhl AMD_HUMAN : 146- 183: pptrl PkgvGfrvGGeTGSKYFvLQVHYgDIsAFrDnnKDCSG vslhl AMD_RAT : 151- 188: pptrl PkgvGfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vsvhl DOPO_BOVIN : 305- 342: kafyy PeeaGlafGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_HUMAN : 298- 335: kafyy PeeaGlafGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt R 18: 86.6736 7( 7) P-x(3)-G-x(2,3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Occurences: 7(7) AMD1_XENLA : 147- 184: pptkl PegvGfrvGGkSGSRYFvLQVHYgNVkAFqDkhKDCTG vtvrv AMD2_XENLA : 149- 186: pptkl PegvGfqvGGkSGSRYFvLQVHYgDVkAFqDkhKDCTG vtvri AMD_BOVIN : 146- 183: pptrl PkgvGfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vslhl AMD_HUMAN : 146- 183: pptrl PkgvGfrvGGeTGSKYFvLQVHYgDIsAFrDnnKDCSG vslhl AMD_RAT : 151- 188: pptrl PkgvGfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vsvhl DOPO_BOVIN : 305- 342: kafyy PeeaGlafGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_HUMAN : 298- 335: kafyy PeeaGlafGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt S 19: 83.0035 7( 7) G-x(3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Occurences: 7(7) AMD1_XENLA : 151- 184: lpegv GfrvGGkSGSRYFvLQVHYgNVkAFqDkhKDCTG vtvrv AMD2_XENLA : 153- 186: lpegv GfqvGGkSGSRYFvLQVHYgDVkAFqDkhKDCTG vtvri AMD_BOVIN : 150- 183: lpkgv GfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vslhl AMD_HUMAN : 150- 183: lpkgv GfrvGGeTGSKYFvLQVHYgDIsAFrDnnKDCSG vslhl AMD_RAT : 155- 188: lpkgv GfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vsvhl DOPO_BOVIN : 309- 342: ypeea GlafGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_HUMAN : 302- 335: ypeea GlafGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt T 20: 82.5035 7( 7) G-x(2,3)-G-G-x-[GST]-[GS]-S-[KR]-[FY]-[FL]-x-L-[EQ]-V-H-Y-x-[DN]-[IPV]-x-[AV]-[FI]-x-[DG]-x(2)-[DK]-[DS]-[CS]-[GST]-[GI] Occurences: 7(7) AMD1_XENLA : 151- 184: lpegv GfrvGGkSGSRYFvLQVHYgNVkAFqDkhKDCTG vtvrv AMD2_XENLA : 153- 186: lpegv GfqvGGkSGSRYFvLQVHYgDVkAFqDkhKDCTG vtvri AMD_BOVIN : 150- 183: lpkgv GfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vslhl AMD_HUMAN : 150- 183: lpkgv GfrvGGeTGSKYFvLQVHYgDIsAFrDnnKDCSG vslhl AMD_RAT : 155- 188: lpkgv GfrvGGeTGSKYFvLQVHYgDIsAFrDnhKDCSG vsvhl DOPO_BOVIN : 309- 342: ypeea GlafGGpGSSRFLrLEVHYhNPlVItGrrDSSGI rlyyt DOPO_HUMAN : 302- 335: ypeea GlafGGpGSSRYLrLEVHYhNPlVIeGrnDSSGI rlyyt Number of patterns evaluated by Pratt:32228 Total running time: 27 seconds