------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file CTF_NFI PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CTF_NFI.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NFI1_CHICK 560 NFI1_HUMAN 499 NFI2_CHICK 419 NFI2_HUMAN 430 NFIA_CHICK 522 NFIC_CHICK 439 NFIL_PIG 231 NFIL_RAT 505 NFIM_PIG 506 NFIR_MESAU 561 NFIX_MESAU 441 Pratt run started at Thu Feb 6 19:11:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 200.1623 11( 11) C-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K 2: 195.9923 11( 11) V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K 3: 195.4923 14( 11) P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R 4: 195.4923 14( 11) P-x(1,2)-C-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R 5: 194.9923 11( 11) K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E 6: 194.9923 11( 11) K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G 7: 194.9923 11( 11) G-K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D 8: 194.9923 11( 11) T-G-K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T 9: 191.8223 11( 11) L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K 10: 191.8223 11( 11) F-H-P-F-I-E-A-L-L-P-H-V-R-A-x(2)-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E-L-L 11: 191.8223 11( 11) E-F-H-P-F-I-E-A-L-L-P-H-V-R-A-x(2)-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E-L 12: 191.8223 11( 11) D-E-F-H-P-F-I-E-A-L-L-P-H-V-R-A-x(2)-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E 13: 191.3223 14( 11) K-x-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G 14: 187.6522 11( 11) N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-x(3)-C 15: 187.6522 11( 11) S-N-P-D-Q-K-G-K-x-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K 16: 187.6522 11( 11) A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E-L-L-x-E-K-x-E-x-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D-I-R 17: 187.6522 11( 11) Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E-L-L-x-E-K-x-E-x-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D-I 18: 187.6522 11( 11) L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E-L-L-x-E-K-x-E-x-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D 19: 187.6522 11( 11) N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E-L-L-x-E-K-x-E-x-K-Q-K-W-A-S-R-L-L-A-K-L-R-K 20: 187.6522 11( 11) F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-x-K-x-E-E-R-A-V-K-D-E-L-L-x-E-K-x-E-x-K-Q-K-W-A-S-R-L-L-A-K-L-R Warning: upper limit on pattern length (components) reached -- to check if longer patterns may be conserved. -- rerun Pratt with increased C and L values Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 204.5184 11( 11) F-H-P-F-I-E-A-L-L-P-H-V-R-A-[FI]-[AS]-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L B 2: 204.5184 11( 11) E-F-H-P-F-I-E-A-L-L-P-H-V-R-A-[FI]-[AS]-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L C 3: 204.5184 11( 11) D-E-F-H-P-F-I-E-A-L-L-P-H-V-R-A-[FI]-[AS]-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E D 4: 203.6247 11( 11) A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D-I-R E 5: 203.6247 11( 11) Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D-I F 6: 203.6247 11( 11) L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D G 7: 203.6247 11( 11) N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K H 8: 203.6247 11( 11) F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R I 9: 203.4694 11( 11) C-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K J 10: 202.4785 11( 11) V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS] K 11: 200.9352 11( 11) L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS]-[AGP] L 12: 198.7993 14( 11) P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R M 13: 198.7993 14( 11) P-x(1,2)-C-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R N 14: 198.2993 11( 11) K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E O 15: 198.2993 11( 11) K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G P 16: 198.2993 11( 11) G-K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D Q 17: 198.2993 11( 11) T-G-K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T R 18: 196.7652 11( 11) N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS]-[AGP]-x-C S 19: 196.7652 11( 11) S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS]-[AGP] T 20: 194.6293 14( 11) K-x-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 204.5184 11( 11) F-H-P-F-I-E-A-L-L-P-H-V-R-A-[FI]-[AS]-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L Occurences: 11(11) NFI1_CHICK : 13- 62: ltqde FHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL sekpe NFI1_HUMAN : 4- 53: mde FHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL gekpe NFI2_CHICK : 13- 62: ltqde FHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL sekpe NFI2_HUMAN : 4- 53: mde FHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL gekpe NFIA_CHICK : 12- 61: ltqde FHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL sekpe NFIC_CHICK : 13- 62: ltqde FHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMTKDEERAVKDELL sekpe NFIL_PIG : 10- 59: ltqde FHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL gekae NFIL_RAT : 8- 57: ltqde FHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL sekpe NFIM_PIG : 13- 62: ltqde FHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL gekae NFIR_MESAU : 13- 62: ltqde FHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL sekpe NFIX_MESAU : 12- 61: ltqde FHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL gekpe B 2: 204.5184 11( 11) E-F-H-P-F-I-E-A-L-L-P-H-V-R-A-[FI]-[AS]-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L Occurences: 11(11) NFI1_CHICK : 12- 61: cltqd EFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lsekp NFI1_HUMAN : 3- 52: md EFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lgekp NFI2_CHICK : 12- 61: cltqd EFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lsekp NFI2_HUMAN : 3- 52: md EFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lgekp NFIA_CHICK : 11- 60: cltqd EFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL lsekp NFIC_CHICK : 12- 61: cltqd EFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMTKDEERAVKDEL lsekp NFIL_PIG : 9- 58: rltqd EFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lgeka NFIL_RAT : 7- 56: cltqd EFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL lsekp NFIM_PIG : 12- 61: cltqd EFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lgeka NFIR_MESAU : 12- 61: cltqd EFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lsekp NFIX_MESAU : 11- 60: cltqd EFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL lgekp C 3: 204.5184 11( 11) D-E-F-H-P-F-I-E-A-L-L-P-H-V-R-A-[FI]-[AS]-Y-T-W-F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E Occurences: 11(11) NFI1_CHICK : 11- 60: icltq DEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llsek NFI1_HUMAN : 2- 51: m DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llgek NFI2_CHICK : 11- 60: icltq DEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llsek NFI2_HUMAN : 2- 51: m DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llgek NFIA_CHICK : 10- 59: lcltq DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE llsek NFIC_CHICK : 11- 60: lcltq DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMTKDEERAVKDE llsek NFIL_PIG : 8- 57: srltq DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llgek NFIL_RAT : 6- 55: lcltq DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE llsek NFIM_PIG : 11- 60: lcltq DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llgek NFIR_MESAU : 11- 60: icltq DEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llsek NFIX_MESAU : 10- 59: ycltq DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE llgek D 4: 203.6247 11( 11) A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D-I-R Occurences: 11(11) NFI1_CHICK : 36- 85: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIR qefre NFI1_HUMAN : 27- 76: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKDIR pecre NFI2_CHICK : 36- 85: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIR qefre NFI2_HUMAN : 27- 76: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKDIR pecre NFIA_CHICK : 35- 84: wfnlq ARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIR pefre NFIC_CHICK : 36- 85: wfnlq ARKRKYFKKHEKRMTKDEERAVKDELLSEKPEVKQKWASRLLAKLRKDIR pecre NFIL_PIG : 33- 82: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDIR pecre NFIL_RAT : 31- 80: wfnlq ARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIR peyre NFIM_PIG : 36- 85: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDIR pecre NFIR_MESAU : 36- 85: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIR qeyre NFIX_MESAU : 35- 84: wfnlq ARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIR pefre E 5: 203.6247 11( 11) Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D-I Occurences: 11(11) NFI1_CHICK : 35- 84: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDI rqefr NFI1_HUMAN : 26- 75: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKDI rpecr NFI2_CHICK : 35- 84: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDI rqefr NFI2_HUMAN : 26- 75: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKDI rpecr NFIA_CHICK : 34- 83: twfnl QARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDI rpefr NFIC_CHICK : 35- 84: twfnl QARKRKYFKKHEKRMTKDEERAVKDELLSEKPEVKQKWASRLLAKLRKDI rpecr NFIL_PIG : 32- 81: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDI rpecr NFIL_RAT : 30- 79: twfnl QARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDI rpeyr NFIM_PIG : 35- 84: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKDI rpecr NFIR_MESAU : 35- 84: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDI rqeyr NFIX_MESAU : 34- 83: twfnl QARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDI rpefr F 6: 203.6247 11( 11) L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K-D Occurences: 11(11) NFI1_CHICK : 34- 83: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKD irqef NFI1_HUMAN : 25- 74: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKD irpec NFI2_CHICK : 34- 83: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKD irqef NFI2_HUMAN : 25- 74: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKD irpec NFIA_CHICK : 33- 82: ytwfn LQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKD irpef NFIC_CHICK : 34- 83: ytwfn LQARKRKYFKKHEKRMTKDEERAVKDELLSEKPEVKQKWASRLLAKLRKD irpec NFIL_PIG : 31- 80: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKD irpec NFIL_RAT : 29- 78: ytwfn LQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKD irpey NFIM_PIG : 34- 83: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRKD irpec NFIR_MESAU : 34- 83: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKD irqey NFIX_MESAU : 33- 82: ytwfn LQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKD irpef G 7: 203.6247 11( 11) N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R-K Occurences: 11(11) NFI1_CHICK : 33- 82: aytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRK dirqe NFI1_HUMAN : 24- 73: aytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRK dirpe NFI2_CHICK : 33- 82: aytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRK dirqe NFI2_HUMAN : 24- 73: aytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRK dirpe NFIA_CHICK : 32- 81: aytwf NLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRK dirpe NFIC_CHICK : 33- 82: aytwf NLQARKRKYFKKHEKRMTKDEERAVKDELLSEKPEVKQKWASRLLAKLRK dirpe NFIL_PIG : 30- 79: aytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRK dirpe NFIL_RAT : 28- 77: aytwf NLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRK dirpe NFIM_PIG : 33- 82: aytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLRK dirpe NFIR_MESAU : 33- 82: aytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRK dirqe NFIX_MESAU : 32- 81: sytwf NLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRK dirpe H 8: 203.6247 11( 11) F-N-L-Q-A-R-K-R-K-Y-F-K-K-H-E-K-R-M-[ST]-K-[DE]-E-E-R-A-V-K-D-E-L-L-[GS]-E-K-[AP]-E-[IV]-K-Q-K-W-A-S-R-L-L-A-K-L-R Occurences: 11(11) NFI1_CHICK : 32- 81: iaytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLR kdirq NFI1_HUMAN : 23- 72: faytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLR kdirp NFI2_CHICK : 32- 81: iaytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLR kdirq NFI2_HUMAN : 23- 72: faytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLR kdirp NFIA_CHICK : 31- 80: faytw FNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLR kdirp NFIC_CHICK : 32- 81: faytw FNLQARKRKYFKKHEKRMTKDEERAVKDELLSEKPEVKQKWASRLLAKLR kdirp NFIL_PIG : 29- 78: faytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLR kdirp NFIL_RAT : 27- 76: faytw FNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLR kdirp NFIM_PIG : 32- 81: faytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVKQKWASRLLAKLR kdirp NFIR_MESAU : 32- 81: iaytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLR kdirq NFIX_MESAU : 31- 80: fsytw FNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLR kdirp I 9: 203.4694 11( 11) C-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K Occurences: 11(11) NFI1_CHICK : 104- 153: kkhpc CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmK sphct NFI1_HUMAN : 95- 144: kkapg CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvK aaqcg NFI2_CHICK : 104- 153: kkhpc CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmK sphct NFI2_HUMAN : 95- 144: kkapg CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvK aaqcg NFIA_CHICK : 103- 152: kkppc CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvK spqcs NFIC_CHICK : 104- 153: kkpsc CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvK agqct NFIL_PIG : 101- 150: kkapg CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvK aaqcg NFIL_RAT : 99- 148: kkppc CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvK spqcs NFIM_PIG : 104- 153: kkapg CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvK aaqcg NFIR_MESAU : 104- 153: kkhpc CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmK sphct NFIX_MESAU : 103- 152: kkppc CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLyK spqcs J 10: 202.4785 11( 11) V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS] Occurences: 11(11) NFI1_CHICK : 105- 154: khpcc VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKS phctn NFI1_HUMAN : 96- 145: kapgc VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKA aqcgh NFI2_CHICK : 105- 154: khpcc VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKS phctn NFI2_HUMAN : 96- 145: kapgc VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKA aqcgh NFIA_CHICK : 104- 153: kppcc VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKS pqcsn NFIC_CHICK : 105- 154: kpscc VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKA gqctn NFIL_PIG : 102- 151: kapgc VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKA aqcgh NFIL_RAT : 100- 149: kppcc VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKS pqcsn NFIM_PIG : 105- 154: kapgc VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKA aqcgh NFIR_MESAU : 105- 154: khpcc VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKS phctn NFIX_MESAU : 104- 153: kppcc VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLyKS pqcsn K 11: 200.9352 11( 11) L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS]-[AGP] Occurences: 11(11) NFI1_CHICK : 106- 155: hpccv LSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSP hctnp NFI1_HUMAN : 97- 146: apgcv LSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFI2_CHICK : 106- 155: hpccv LSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSP hctnp NFI2_HUMAN : 97- 146: apgcv LSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFIA_CHICK : 105- 154: ppccv LSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKSP qcsnp NFIC_CHICK : 106- 155: psccv LSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAG qctnp NFIL_PIG : 103- 152: apgcv LSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFIL_RAT : 101- 150: ppccv LSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKSP qcsnp NFIM_PIG : 106- 155: apgcv LSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFIR_MESAU : 106- 155: hpccv LSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSP hctnp NFIX_MESAU : 105- 154: ppccv LSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLyKSP qcsnp L 12: 198.7993 14( 11) P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R Occurences: 14(11) NFI1_CHICK : 102- 150: tgkkh PcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lmksp NFI1_HUMAN : 93- 141: tgkka PgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFI2_CHICK : 102- 150: tgkkh PcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lmksp NFI2_HUMAN : 93- 141: tgkka PgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFIA_CHICK : 100- 149: vtgkk PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIA_CHICK : 101- 149: tgkkp PcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIC_CHICK : 101- 150: itgkk PsCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkag NFIL_PIG : 99- 147: tgkka PgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFIL_RAT : 96- 145: vtgkk PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIL_RAT : 97- 145: tgkkp PcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIM_PIG : 102- 150: tgkka PgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFIR_MESAU : 102- 150: tgkkh PcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lmksp NFIX_MESAU : 100- 149: itgkk PpCcVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lyksp NFIX_MESAU : 101- 149: tgkkp PcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lyksp M 13: 198.7993 14( 11) P-x(1,2)-C-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R Occurences: 14(11) NFI1_CHICK : 102- 150: tgkkh Pc-CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lmksp NFI1_HUMAN : 93- 141: tgkka Pg-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFI2_CHICK : 102- 150: tgkkh Pc-CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lmksp NFI2_HUMAN : 93- 141: tgkka Pg-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFIA_CHICK : 100- 149: vtgkk PpcCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIA_CHICK : 101- 149: tgkkp Pc-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIC_CHICK : 101- 150: itgkk PscCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkag NFIL_PIG : 99- 147: tgkka Pg-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFIL_RAT : 96- 145: vtgkk PpcCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIL_RAT : 97- 145: tgkkp Pc-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvksp NFIM_PIG : 102- 150: tgkka Pg-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lvkaa NFIR_MESAU : 102- 150: tgkkh Pc-CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lmksp NFIX_MESAU : 100- 149: itgkk PpcCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lyksp NFIX_MESAU : 101- 149: tgkkp Pc-CVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGER lyksp N 14: 198.2993 11( 11) K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E Occurences: 11(11) NFI1_CHICK : 100- 149: tvtgk KhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlmks NFI1_HUMAN : 91- 140: sitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvka NFI2_CHICK : 100- 149: tvtgk KhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlmks NFI2_HUMAN : 91- 140: sitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvka NFIA_CHICK : 99- 148: tvtgk KpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvks NFIA_CHICK : 99- 148: tvtgk K-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvks NFIC_CHICK : 100- 149: sitgk K-PsCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvka NFIL_PIG : 97- 146: aitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvka NFIL_RAT : 95- 144: tvtgk KpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvks NFIL_RAT : 95- 144: tvtgk K-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvks NFIM_PIG : 100- 149: aitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlvka NFIR_MESAU : 100- 149: tvtgk KhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlmks NFIX_MESAU : 99- 148: titgk KpPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlyks NFIX_MESAU : 99- 148: titgk K-PpCcVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGE rlyks O 15: 198.2993 11( 11) K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G Occurences: 11(11) NFI1_CHICK : 99- 148: ltvtg KKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlmk NFI1_HUMAN : 90- 139: lsitg KKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFI2_CHICK : 99- 148: ltvtg KKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlmk NFI2_HUMAN : 90- 139: lsitg KKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIA_CHICK : 98- 147: ltvtg KKpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIA_CHICK : 98- 147: ltvtg KK-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIC_CHICK : 99- 148: lsitg KK-PsCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIL_PIG : 96- 145: laitg KKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIL_RAT : 94- 143: ltvtg KKpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIL_RAT : 94- 143: ltvtg KK-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIM_PIG : 99- 148: laitg KKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIR_MESAU : 99- 148: ltvtg KKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlmk NFIX_MESAU : 98- 147: ltitg KKpPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlyk NFIX_MESAU : 98- 147: ltitg KK-PpCcVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlyk P 16: 198.2993 11( 11) G-K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D Occurences: 11(11) NFI1_CHICK : 98- 147: vltvt GKKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlm NFI1_HUMAN : 89- 138: vlsit GKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFI2_CHICK : 98- 147: vltvt GKKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlm NFI2_HUMAN : 89- 138: vlsit GKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIA_CHICK : 97- 146: vltvt GKKpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIA_CHICK : 97- 146: vltvt GKK-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIC_CHICK : 98- 147: vlsit GKK-PsCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIL_PIG : 95- 144: vlait GKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIL_RAT : 93- 142: vltvt GKKpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIL_RAT : 93- 142: vltvt GKK-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIM_PIG : 98- 147: vlait GKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlv NFIR_MESAU : 98- 147: vltvt GKKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerlm NFIX_MESAU : 97- 146: vltit GKKpPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerly NFIX_MESAU : 97- 146: vltit GKK-PpCcVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTD gerly Q 17: 198.2993 11( 11) T-G-K-K-x(0,1)-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T Occurences: 11(11) NFI1_CHICK : 97- 146: fvltv TGKKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFI1_HUMAN : 88- 137: fvlsi TGKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFI2_CHICK : 97- 146: fvltv TGKKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFI2_HUMAN : 88- 137: fvlsi TGKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIA_CHICK : 96- 145: fvltv TGKKpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIA_CHICK : 96- 145: fvltv TGKK-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIC_CHICK : 97- 146: fvlsi TGKK-PsCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIL_PIG : 94- 143: fvlai TGKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIL_RAT : 92- 141: fvltv TGKKpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIL_RAT : 92- 141: fvltv TGKK-PpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIM_PIG : 97- 146: fvlai TGKKaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIR_MESAU : 97- 146: fvltv TGKKhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIX_MESAU : 96- 145: fvlti TGKKpPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl NFIX_MESAU : 96- 145: fvlti TGKK-PpCcVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLEST dgerl R 18: 196.7652 11( 11) N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS]-[AGP]-x-C Occurences: 11(11) NFI1_CHICK : 108- 157: ccvls NPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSPhC tnpal NFI1_HUMAN : 99- 148: gcvls NPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAAqC ghpvl NFI2_CHICK : 108- 157: ccvls NPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSPhC tnpal NFI2_HUMAN : 99- 148: gcvls NPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAAqC ghpvl NFIA_CHICK : 107- 156: ccvls NPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKSPqC snpgl NFIC_CHICK : 108- 157: ccvls NPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAGqC tnpil NFIL_PIG : 105- 154: gcvls NPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAAqC ghpvl NFIL_RAT : 103- 152: ccvls NPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKSPqC snpgl NFIM_PIG : 108- 157: gcvls NPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAAqC ghpvl NFIR_MESAU : 108- 157: ccvls NPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSPhC tnpal NFIX_MESAU : 107- 156: ccvls NPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLyKSPqC snpgl S 19: 196.7652 11( 11) S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G-E-R-L-x-K-[AS]-[AGP] Occurences: 11(11) NFI1_CHICK : 107- 155: pccvl SNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSP hctnp NFI1_HUMAN : 98- 146: pgcvl SNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFI2_CHICK : 107- 155: pccvl SNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSP hctnp NFI2_HUMAN : 98- 146: pgcvl SNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFIA_CHICK : 106- 154: pccvl SNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKSP qcsnp NFIC_CHICK : 107- 155: sccvl SNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAG qctnp NFIL_PIG : 104- 152: pgcvl SNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFIL_RAT : 102- 150: pccvl SNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKSP qcsnp NFIM_PIG : 107- 155: pgcvl SNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLvKAA qcghp NFIR_MESAU : 107- 155: pccvl SNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLmKSP hctnp NFIX_MESAU : 106- 154: pccvl SNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLyKSP qcsnp T 20: 194.6293 14( 11) K-x-P-x-C-x(0,1)-V-L-S-N-P-D-Q-K-G-K-[IM]-R-R-I-D-C-L-R-Q-A-D-K-V-W-R-L-D-L-V-M-V-I-L-F-K-G-I-P-L-E-S-T-D-G Occurences: 14(11) NFI1_CHICK : 100- 148: tvtgk KhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlmk NFI1_HUMAN : 91- 139: sitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFI2_CHICK : 100- 148: tvtgk KhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlmk NFI2_HUMAN : 91- 139: sitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIA_CHICK : 98- 147: ltvtg KkPpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIA_CHICK : 99- 147: tvtgk KpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIC_CHICK : 99- 148: lsitg KkPsCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIL_PIG : 97- 145: aitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIL_RAT : 94- 143: ltvtg KkPpCcVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIL_RAT : 95- 143: tvtgk KpPcC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIM_PIG : 100- 148: aitgk KaPgC-VLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlvk NFIR_MESAU : 100- 148: tvtgk KhPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlmk NFIX_MESAU : 98- 147: ltitg KkPpCcVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlyk NFIX_MESAU : 99- 147: titgk KpPcC-VLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDG erlyk Number of patterns evaluated by Pratt:332641 Total running time: 89 seconds