------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file COX10_CTAB_CYOE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename COX10_CTAB_CYOE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: COXX_BACFI 312 COXX_BACSU 305 COXX_PARDE 279 COXX_YEAST 462 CYOE_ECOLI 296 Pratt run started at Thu Feb 6 19:09:35 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.5203 5( 5) G-x(3)-G-x(2)-P-P-x(2)-G-x(1,2)-A 2: 24.5203 5( 5) D-x(2)-M-x-R-T-x(2)-R-x(1,2)-V 3: 24.0203 6( 5) G-x(2,3)-G-x(2)-P-P-x(2)-G-x(1,2)-A 4: 24.0203 5( 5) M-x-R-T-x(2)-R-x(1,2)-V-x(1,2)-G 5: 24.0203 5( 5) D-x(2)-M-x(0,1)-R-x(0,1)-T-x(2)-R-x(4)-G 6: 24.0203 5( 5) D-x(1,2)-M-x-R-T-x(2)-R-x(1,2)-V 7: 24.0203 5( 5) D-x(4)-R-T-x(2)-R-x(1,2)-V-x(1,2)-G 8: 20.3503 5( 5) G-x(2)-P-P-x(2)-G-x(1,2)-A 9: 19.8503 5( 5) R-T-x(2)-R-x(1,2)-V-x(1,2)-G 10: 19.8503 5( 5) M-x(0,1)-R-x(0,1)-T-x(2)-R-x(4)-G 11: 18.8503 6( 5) L-x(2,4)-F-x(0,2)-W-x(2)-P-H 12: 18.8503 5( 5) G-x(0,2)-A-x(2)-P-x(2,4)-G-x(5)-G 13: 16.1802 5( 5) P-P-x(2)-G-x(1,2)-A 14: 16.1802 5( 5) I-x(5)-R-x(3)-R-x(3,4)-G 15: 15.6802 6( 5) A-L-x(1,2)-G-x(2,3)-V 16: 15.6802 5( 5) F-x(2,3)-L-x(0,1)-G-x(3)-V 17: 15.6802 6( 5) M-x(2,3)-T-x(2)-R-x(1,2)-V 18: 15.6802 5( 5) A-x(2)-P-x(0,1)-L-x(3,4)-G 19: 15.6802 5( 5) Y-x(5)-P-x-L-x(1,3)-V 20: 15.6802 5( 5) L-x(4,5)-I-x(4,5)-L-x(4)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 76.4990 5( 5) D-x(2)-M-x(0,1)-R-x(0,1)-T-x(2)-R-[PV]-x-[PV]-x-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV] B 2: 74.9944 5( 5) M-x(0,1)-R-x(0,1)-T-x(2)-R-[PV]-x-[PV]-x-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV]-x(3)-[AIV] C 3: 74.3075 5( 5) D-x(2)-M-x-R-T-x(2)-R-x(1,2)-V-x(1,2)-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV] D 4: 72.8029 5( 5) M-x-R-T-x(2)-R-x(1,2)-V-x(1,2)-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV]-x(3)-[AIV] E 5: 71.8039 5( 5) R-T-x(2)-R-x(1,2)-V-x(1,2)-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV]-x(3)-[AIV]-x(2)-[FI] F 6: 49.4507 5( 5) G-[AGS]-x-[ASV]-G-x(2)-P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] G 7: 43.7602 6( 5) G-x(2,3)-G-x(2)-P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] H 8: 40.0902 5( 5) G-x(2)-P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] I 9: 39.7617 5( 5) G-x(0,2)-A-x-[PS]-P-x(2,4)-G-x(3)-[ILPV]-[ADET]-G-x-[FIL]-x(3)-[AQS]-x-[ILPV]-x-[FL]-x(2)-[FILM] J 10: 35.9201 5( 5) P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] K 11: 32.2619 5( 5) I-[DR]-x(4)-R-x(3)-R-x(3,4)-G-x(2)-[QST]-x(4)-[AL]-x(2)-[AEG]-x(3)-[AGNSV]-x-[AGL] L 12: 31.7160 6( 5) L-x(2,4)-F-x(0,2)-W-[QT]-x-P-H-x(2)-[AT]-[IL]-[AS] M 13: 30.3259 5( 5) D-x(2)-M-x-R-T-x(2)-R-x(1,2)-V-x-[GS]-x(3)-[APT] N 14: 29.8259 5( 5) D-x(1,2)-M-x-R-T-x(2)-R-x(1,2)-V-x-[GS]-x(3)-[APT] O 15: 21.9857 5( 5) M-x(2)-T-x(2)-R-x(1,2)-V-x-[GS]-x(3)-[APT] P 16: 21.5078 5( 5) Y-x(2)-[AL]-[GNT]-x-P-x-L-x(1,3)-V Q 17: 18.3421 5( 5) A-[AGN]-x-P-x(0,1)-L-x(3,4)-G R 18: 17.9215 5( 5) F-x(2,3)-L-x(0,1)-G-x(3)-V-x-[AGIL] S 19: 17.8681 5( 5) G-x(0,2)-A-x-[PS]-P-x(2,4)-G T 20: 15.6802 6( 5) A-L-x(1,2)-G-x(2,3)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 76.4990 5( 5) D-x(2)-M-x(0,1)-R-x(0,1)-T-x(2)-R-[PV]-x-[PV]-x-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV] Occurences: 5(5) COXX_BACFI : 97- 142: idrdi DhlMeR-TkeRPtVtGrFSAkhvLlvGlAqAaLGIiFLalTTptaAV iglig COXX_BACSU : 89- 134: ydrdi DhlMeR-TkvRPtVtGkIQPsqaLwsGiLlVaLGLiMLlmTTvmaAV igfig COXX_PARDE : 50- 95: ydadi DavMrR-TagRPvPsGrVTSqepLavGiAlSgLSVmMLgaGGnwfAA gflaf COXX_PARDE : 50- 95: ydadi DavM-RrTagRPvPsGrVTSqepLavGiAlSgLSVmMLgaGGnwfAA gflaf COXX_YEAST : 207- 252: repef DrqMvR-TqaRPvVrGdVTPtqaFefAaLiGtLGVsILyfGVnptVA ilgas CYOE_ECOLI : 65- 110: idrdi DrkMeR-TknRVlVkGlISPavsLvyAtLlGiAGFmLLwfGAnplAC wlgvm B 2: 74.9944 5( 5) M-x(0,1)-R-x(0,1)-T-x(2)-R-[PV]-x-[PV]-x-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV]-x(3)-[AIV] Occurences: 5(5) COXX_BACFI : 100- 146: didhl MeR-TkeRPtVtGrFSAkhvLlvGlAqAaLGIiFLalTTptaAViglI glfiy COXX_BACSU : 92- 138: didhl MeR-TkvRPtVtGkIQPsqaLwsGiLlVaLGLiMLlmTTvmaAVigfI gvfty COXX_PARDE : 53- 99: didav MrR-TagRPvPsGrVTSqepLavGiAlSgLSVmMLgaGGnwfAAgflA ftiff COXX_PARDE : 53- 99: didav M-RrTagRPvPsGrVTSqepLavGiAlSgLSVmMLgaGGnwfAAgflA ftiff COXX_YEAST : 210- 256: efdrq MvR-TqaRPvVrGdVTPtqaFefAaLiGtLGVsILyfGVnptVAilgA snial CYOE_ECOLI : 68- 114: didrk MeR-TknRVlVkGlISPavsLvyAtLlGiAGFmLLwfGAnplACwlgV mgfvv C 3: 74.3075 5( 5) D-x(2)-M-x-R-T-x(2)-R-x(1,2)-V-x(1,2)-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV] Occurences: 5(5) COXX_BACFI : 97- 142: idrdi DhlMeRTkeRptVt-GrFSAkhvLlvGlAqAaLGIiFLalTTptaAV iglig COXX_BACSU : 89- 134: ydrdi DhlMeRTkvRptVt-GkIQPsqaLwsGiLlVaLGLiMLlmTTvmaAV igfig COXX_PARDE : 50- 95: ydadi DavMrRTagRp-VpsGrVTSqepLavGiAlSgLSVmMLgaGGnwfAA gflaf COXX_YEAST : 207- 252: repef DrqMvRTqaRpvVr-GdVTPtqaFefAaLiGtLGVsILyfGVnptVA ilgas COXX_YEAST : 207- 252: repef DrqMvRTqaRp-VvrGdVTPtqaFefAaLiGtLGVsILyfGVnptVA ilgas CYOE_ECOLI : 65- 110: idrdi DrkMeRTknRvlVk-GlISPavsLvyAtLlGiAGFmLLwfGAnplAC wlgvm D 4: 72.8029 5( 5) M-x-R-T-x(2)-R-x(1,2)-V-x(1,2)-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV]-x(3)-[AIV] Occurences: 5(5) COXX_BACFI : 100- 146: didhl MeRTkeRptVt-GrFSAkhvLlvGlAqAaLGIiFLalTTptaAViglI glfiy COXX_BACSU : 92- 138: didhl MeRTkvRptVt-GkIQPsqaLwsGiLlVaLGLiMLlmTTvmaAVigfI gvfty COXX_PARDE : 53- 99: didav MrRTagRp-VpsGrVTSqepLavGiAlSgLSVmMLgaGGnwfAAgflA ftiff COXX_YEAST : 210- 256: efdrq MvRTqaRpvVr-GdVTPtqaFefAaLiGtLGVsILyfGVnptVAilgA snial COXX_YEAST : 210- 256: efdrq MvRTqaRp-VvrGdVTPtqaFefAaLiGtLGVsILyfGVnptVAilgA snial CYOE_ECOLI : 68- 114: didrk MeRTknRvlVk-GlISPavsLvyAtLlGiAGFmLLwfGAnplACwlgV mgfvv E 5: 71.8039 5( 5) R-T-x(2)-R-x(1,2)-V-x(1,2)-G-x-[FIV]-[QST]-[APS]-x(3)-[FL]-x(2)-[AG]-x-[AL]-x-[AGSV]-x-[AL]-[GS]-[FILV]-x-[FILM]-L-x(2)-[GT]-[AGTV]-x(3)-[AV]-[ACV]-x(3)-[AIV]-x(2)-[FI] Occurences: 5(5) COXX_BACFI : 102- 149: dhlme RTkeRptVt-GrFSAkhvLlvGlAqAaLGIiFLalTTptaAViglIglF iyvvl COXX_BACSU : 94- 141: dhlme RTkvRptVt-GkIQPsqaLwsGiLlVaLGLiMLlmTTvmaAVigfIgvF tyvvl COXX_PARDE : 55- 102: davmr RTagRp-VpsGrVTSqepLavGiAlSgLSVmMLgaGGnwfAAgflAftI ffyav COXX_YEAST : 212- 259: drqmv RTqaRpvVr-GdVTPtqaFefAaLiGtLGVsILyfGVnptVAilgAsnI alygw COXX_YEAST : 212- 259: drqmv RTqaRp-VvrGdVTPtqaFefAaLiGtLGVsILyfGVnptVAilgAsnI alygw CYOE_ECOLI : 70- 117: drkme RTknRvlVk-GlISPavsLvyAtLlGiAGFmLLwfGAnplACwlgVmgF vvyvg F 6: 49.4507 5( 5) G-[AGS]-x-[ASV]-G-x(2)-P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] Occurences: 5(5) COXX_BACFI : 170- 199: lntiv GSfSGavPPLIGw-AAiDgglhLyawLlffI mflwq COXX_BACSU : 162- 192: intvv GSvSGavPPLIGwtAVeGnigvVawvLfmiL fiwqi COXX_PARDE : 124- 153: qnivi GGaAGafPPMIGw-ALpTggigIeslLmfaL iffwt COXX_YEAST : 280- 310: intwl GAlVGmvPPLMGwaAAsPlshpGswcLaglL fawqf CYOE_ECOLI : 139- 169: ygtli GSlSGaaPPVIGycAVtGefdsGaaiLlaiF slwqm G 7: 43.7602 6( 5) G-x(2,3)-G-x(2)-P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] Occurences: 6(5) COXX_BACFI : 170- 199: lntiv GsfsGavPPLIGw-AAiDgglhLyawLlffI mflwq COXX_BACSU : 162- 192: intvv GsvsGavPPLIGwtAVeGnigvVawvLfmiL fiwqi COXX_PARDE : 124- 153: qnivi GgaaGafPPMIGw-ALpTggigIeslLmfaL iffwt COXX_PARDE : 125- 153: nivig Gaa-GafPPMIGw-ALpTggigIeslLmfaL iffwt COXX_YEAST : 280- 310: intwl GalvGmvPPLMGwaAAsPlshpGswcLaglL fawqf CYOE_ECOLI : 139- 169: ygtli GslsGaaPPVIGycAVtGefdsGaaiLlaiF slwqm H 8: 40.0902 5( 5) G-x(2)-P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] Occurences: 5(5) COXX_BACFI : 174- 199: vgsfs GavPPLIGw-AAiDgglhLyawLlffI mflwq COXX_BACSU : 166- 192: vgsvs GavPPLIGwtAVeGnigvVawvLfmiL fiwqi COXX_PARDE : 128- 153: iggaa GafPPMIGw-ALpTggigIeslLmfaL iffwt COXX_YEAST : 284- 310: lgalv GmvPPLMGwaAAsPlshpGswcLaglL fawqf CYOE_ECOLI : 143- 169: igsls GaaPPVIGycAVtGefdsGaaiLlaiF slwqm I 9: 39.7617 5( 5) G-x(0,2)-A-x-[PS]-P-x(2,4)-G-x(3)-[ILPV]-[ADET]-G-x-[FIL]-x(3)-[AQS]-x-[ILPV]-x-[FL]-x(2)-[FILM] Occurences: 5(5) COXX_BACFI : 174- 200: vgsfs G--AvPPli--GwaaIDGgLhlyAwLlFfiM flwqp COXX_BACSU : 166- 192: vgsvs G--AvPPli--GwtaVEGnIgvvAwVlFmiL fiwqi COXX_PARDE : 128- 154: iggaa G--AfPPmi--GwalPTGgIgieSlLmFalI ffwtp COXX_YEAST : 291- 321: vpplm GwaAaSPlshpGswcLAGlLfawQfPhFntL shnir CYOE_ECOLI : 143- 169: igsls G--AaPPvi--GycaVTGeFdsgAaIlLaiF slwqm J 10: 35.9201 5( 5) P-P-[LMV]-[IM]-G-x(1,2)-A-[ALV]-x-[DGPST]-x(4)-[GILV]-x(3)-L-x(3)-[FIL] Occurences: 5(5) COXX_BACFI : 177- 199: fsgav PPLIGw-AAiDgglhLyawLlffI mflwq COXX_BACSU : 169- 192: vsgav PPLIGwtAVeGnigvVawvLfmiL fiwqi COXX_PARDE : 131- 153: aagaf PPMIGw-ALpTggigIeslLmfaL iffwt COXX_YEAST : 287- 310: lvgmv PPLMGwaAAsPlshpGswcLaglL fawqf CYOE_ECOLI : 146- 169: lsgaa PPVIGycAVtGefdsGaaiLlaiF slwqm K 11: 32.2619 5( 5) I-[DR]-x(4)-R-x(3)-R-x(3,4)-G-x(2)-[QST]-x(4)-[AL]-x(2)-[AEG]-x(3)-[AGNSV]-x-[AGL] Occurences: 5(5) COXX_BACFI : 96- 128: yidrd IDhlmeRtkeRptvtGrfSakhvLlvGlaqAaL giifl COXX_BACSU : 88- 120: wydrd IDhlmeRtkvRptvtGkiQpsqaLwsGillVaL gliml COXX_PARDE : 49- 81: wydad IDavmrRtagRpvpsGrvTsqepLavGialSgL svmml COXX_YEAST : 38- 69: dtqik IRfngvRyisRnhg-GkqQhintApiEftpNfG ygdrt CYOE_ECOLI : 64- 96: yidrd IDrkmeRtknRvlvkGliSpavsLvyAtllGiA gfmll L 12: 31.7160 6( 5) L-x(2,4)-F-x(0,2)-W-[QT]-x-P-H-x(2)-[AT]-[IL]-[AS] Occurences: 6(5) COXX_BACFI : 196- 212: lyawl LffimFl-WQpPHflALA mkrve COXX_BACSU : 188- 204: vvawv LfmilFi-WQiPHflALA ikkte COXX_PARDE : 153- 166: llmfa Lif--F--WTpPHfwALA lfmkd COXX_YEAST : 306- 322: pgswc LagllFa-WQfPHfnTLS hnirn CYOE_ECOLI : 165- 181: sgaai Llai-FslWQmPHsyAIA ifrfk CYOE_ECOLI : 166- 181: gaail Lai--FslWQmPHsyAIA ifrfk M 13: 30.3259 5( 5) D-x(2)-M-x-R-T-x(2)-R-x(1,2)-V-x-[GS]-x(3)-[APT] Occurences: 5(5) COXX_BACFI : 97- 115: idrdi DhlMeRTkeRptVtGrfsA khvll COXX_BACSU : 89- 107: ydrdi DhlMeRTkvRptVtGkiqP sqalw COXX_PARDE : 50- 67: ydadi DavMrRTagRp-VpSgrvT sqepl COXX_YEAST : 207- 225: repef DrqMvRTqaRpvVrGdvtP tqafe CYOE_ECOLI : 65- 83: idrdi DrkMeRTknRvlVkGlisP avslv N 14: 29.8259 5( 5) D-x(1,2)-M-x-R-T-x(2)-R-x(1,2)-V-x-[GS]-x(3)-[APT] Occurences: 5(5) COXX_BACFI : 97- 115: idrdi DhlMeRTkeRptVtGrfsA khvll COXX_BACSU : 89- 107: ydrdi DhlMeRTkvRptVtGkiqP sqalw COXX_PARDE : 50- 67: ydadi DavMrRTagRp-VpSgrvT sqepl COXX_YEAST : 207- 225: repef DrqMvRTqaRpvVrGdvtP tqafe CYOE_ECOLI : 65- 83: idrdi DrkMeRTknRvlVkGlisP avslv O 15: 21.9857 5( 5) M-x(2)-T-x(2)-R-x(1,2)-V-x-[GS]-x(3)-[APT] Occurences: 5(5) COXX_BACFI : 100- 115: didhl MerTkeRptVtGrfsA khvll COXX_BACSU : 92- 107: didhl MerTkvRptVtGkiqP sqalw COXX_PARDE : 53- 67: didav MrrTagRp-VpSgrvT sqepl COXX_YEAST : 210- 225: efdrq MvrTqaRpvVrGdvtP tqafe CYOE_ECOLI : 68- 83: didrk MerTknRvlVkGlisP avslv P 16: 21.5078 5( 5) Y-x(2)-[AL]-[GNT]-x-P-x-L-x(1,3)-V Occurences: 5(5) COXX_BACFI : 219- 229: krvee YraAGiPmLp--V vagfe COXX_BACFI : 219- 230: krvee YraAGiPmLpv-V agfem COXX_BACSU : 211- 222: kkted YraANiPmLpd-V ygfev COXX_PARDE : 173- 183: fmkdd YskAGvPmLt--V thgrk COXX_YEAST : 149- 161: kvimp YlqLTkPrLtilV mlsai CYOE_ECOLI : 188- 198: frfkd YqaANiPvLp--V vkgis CYOE_ECOLI : 188- 199: frfkd YqaANiPvLpv-V kgisv Q 17: 18.3421 5( 5) A-[AGN]-x-P-x(0,1)-L-x(3,4)-G Occurences: 5(5) COXX_BACFI : 222- 232: eeyra AGiPmLpvvaG femtk COXX_BACSU : 214- 224: edyra ANiPmLpdvyG fevtk COXX_PARDE : 176- 186: ddysk AGvPmLtvthG rkvtr COXX_YEAST : 294- 302: lmgwa AAsP-Lshp-G swcla CYOE_ECOLI : 191- 201: kdyqa ANiPvLpvvkG isvak R 18: 17.9215 5( 5) F-x(2,3)-L-x(0,1)-G-x(3)-V-x-[AGIL] Occurences: 5(5) COXX_BACFI : 73- 83: ldtmi Fal-L-GaalVmA ggctl COXX_BACSU : 245- 256: mplpf FlgsL-GlpiViL gllln COXX_PARDE : 204- 215: lvlap FalwL-GftsVgG plyla COXX_YEAST : 231- 242: tqafe Faa-LiGtlgVsI lyfgv CYOE_ECOLI : 39- 51: idypl FiytLvGvslVvA sgcvf S 19: 17.8681 5( 5) G-x(0,2)-A-x-[PS]-P-x(2,4)-G Occurences: 5(5) COXX_BACFI : 174- 181: vgsfs G--AvPPli--G waaid COXX_BACSU : 166- 173: vgsvs G--AvPPli--G wtave COXX_PARDE : 128- 135: iggaa G--AfPPmi--G walpt COXX_YEAST : 291- 302: vpplm GwaAaSPlshpG swcla CYOE_ECOLI : 143- 150: igsls G--AaPPvi--G ycavt T 20: 15.6802 6( 5) A-L-x(1,2)-G-x(2,3)-V Occurences: 6(5) COXX_BACFI : 74- 81: dtmif ALl-GaalV maggc COXX_BACSU : 110- 118: iqpsq ALwsGillV algli COXX_PARDE : 77- 83: lavgi ALs-Gls-V mmlga COXX_PARDE : 205- 213: vlapf ALwlGftsV ggply COXX_YEAST : 233- 240: afefa ALi-GtlgV silyf CYOE_ECOLI : 248- 254: wwlgm ALr-Gyk-V addri Number of patterns evaluated by Pratt:7964 Total running time: 3 seconds