------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file COPROGEN_OXIDASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename COPROGEN_OXIDASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HEM6_ECOLI 299 HEM6_HUMAN 354 HEM6_MOUSE 354 HEM6_PSEAE 305 HEM6_SALTY 299 HEM6_SOYBN 385 HEM6_YEAST 328 Pratt run started at Thu Feb 6 19:09:22 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 120.4315 7( 7) R-R-G-R-Y-V-E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S 2: 120.4315 7( 7) Q-x(2)-R-R-G-R-Y-V-E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P 3: 116.2614 7( 7) G-R-Y-V-E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E 4: 116.2614 7( 7) R-G-R-Y-V-E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S 5: 112.0914 7( 7) R-Y-V-E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E 6: 107.9213 7( 7) Y-V-E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E 7: 103.7513 7( 7) V-E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E 8: 103.2513 7( 7) E-F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 9: 99.0812 7( 7) F-N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 10: 94.9112 7( 7) N-L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 11: 90.7411 7( 7) L-x(2)-D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 12: 86.5711 7( 7) D-R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 13: 82.4010 7( 7) R-G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 14: 79.2310 7( 7) Y-P-x(2)-K-x-W-C-D-x-Y-F-x(3)-H-R-x-E-x-R-G-x-G-G-x-F-F-D-D 15: 78.2310 7( 7) G-T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 16: 75.0609 7( 7) P-x(2)-K-x-W-C-D-x-Y-F-x(3)-H-R-x-E-x-R-G-x-G-G-x-F-F-D-D 17: 74.0609 7( 7) T-x-F-G-L-x(2,3)-G-x-R-x-E-S-I-L-x-S-x-P-x(4)-W-x-Y-x(3)-P-x(3)-S-x-E-x(2,3)-L 18: 73.5609 9( 7) Y-x(1,3)-K-x(0,1)-W-C-D-x-Y-F-x(3)-H-R-x-E-x-R-G-x-G-G-x-F-F-D-D 19: 70.8909 7( 7) K-x-W-C-D-x-Y-F-x(3)-H-R-x-E-x-R-G-x-G-G-x-F-F-D-D 20: 70.3909 13( 7) K-x(0,1)-W-C-D-x-Y-F-x(3)-H-R-x-E-x-R-G-x-G-G-x-F-F-D-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 148.4756 7( 7) R-R-G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S B 2: 145.2026 7( 7) Q-x(2)-R-R-G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P C 3: 144.3056 7( 7) G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E D 4: 144.3056 7( 7) R-G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S E 5: 140.1356 7( 7) R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E F 6: 135.9655 7( 7) Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E G 7: 135.0821 7( 7) V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2)-[IL] H 8: 131.2955 7( 7) E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L I 9: 129.3132 7( 7) F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST] J 10: 125.2140 7( 7) Y-P-[KR]-[FY]-K-[EK]-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS] K 11: 125.1432 7( 7) N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST] L 12: 121.0439 7( 7) P-[KR]-[FY]-K-[EK]-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS] M 13: 120.9731 7( 7) L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST] N 14: 117.7904 7( 7) K-[EK]-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS]-x(3)-[AS]-Y O 15: 114.0790 13( 7) K-x(0,1)-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS]-x(3)-[AS]-Y P 16: 114.0079 7( 7) D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV] Q 17: 112.4894 7( 7) R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV]-[DKR] R 18: 110.9089 7( 7) G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV]-[DKR]-[DER] S 19: 109.8999 9( 7) Y-x(1,3)-K-x(0,1)-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS] T 20: 106.7389 7( 7) T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV]-[DKR]-[DER] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 148.4756 7( 7) R-R-G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S Occurences: 7(7) HEM6_ECOLI : 236- 284: nfqly RRGRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGS peaal HEM6_HUMAN : 288- 337: lwqql RRGRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNS keaei HEM6_MOUSE : 288- 337: lwqql RRGRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNS keaei HEM6_PSEAE : 237- 285: efqay RRGRYVEFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGS eearl HEM6_SALTY : 236- 284: nfqly RRGRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGS peaal HEM6_SOYBN : 321- 369: awqql RRGRYVEFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGS eewkl HEM6_YEAST : 262- 311: qwqai RRGRYVEFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGS reakl B 2: 145.2026 7( 7) Q-x(2)-R-R-G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P Occurences: 7(7) HEM6_ECOLI : 233- 280: rernf QlyRRGRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqP kdgsp HEM6_HUMAN : 285- 333: qeklw QqlRRGRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsP sensk HEM6_MOUSE : 285- 333: rdklw QqlRRGRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsP pensk HEM6_PSEAE : 234- 281: rqref QayRRGRYVEFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkP epgse HEM6_SALTY : 233- 280: rernf QlyRRGRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqP eagsp HEM6_SOYBN : 318- 365: hqkaw QqlRRGRYVEFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkP eegse HEM6_YEAST : 259- 307: eeqqw QaiRRGRYVEFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhP apgsr C 3: 144.3056 7( 7) G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E Occurences: 7(7) HEM6_ECOLI : 238- 286: qlyrr GRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpE aalse HEM6_HUMAN : 290- 339: qqlrr GRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkE aeile HEM6_MOUSE : 290- 339: qqlrr GRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkE aeile HEM6_PSEAE : 239- 287: qayrr GRYVEFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeE arlte HEM6_SALTY : 238- 286: qlyrr GRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpE aalse HEM6_SOYBN : 323- 371: qqlrr GRYVEFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeE wklld HEM6_YEAST : 264- 313: qairr GRYVEFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrE aklle D 4: 144.3056 7( 7) R-G-R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S Occurences: 7(7) HEM6_ECOLI : 237- 284: fqlyr RGRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGS peaal HEM6_HUMAN : 289- 337: wqqlr RGRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNS keaei HEM6_MOUSE : 289- 337: wqqlr RGRYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNS keaei HEM6_PSEAE : 238- 285: fqayr RGRYVEFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGS eearl HEM6_SALTY : 237- 284: fqlyr RGRYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGS peaal HEM6_SOYBN : 322- 369: wqqlr RGRYVEFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGS eewkl HEM6_YEAST : 263- 311: wqair RGRYVEFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGS reakl E 5: 140.1356 7( 7) R-Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E Occurences: 7(7) HEM6_ECOLI : 239- 286: lyrrg RYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpE aalse HEM6_HUMAN : 291- 339: qlrrg RYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkE aeile HEM6_MOUSE : 291- 339: qlrrg RYVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkE aeile HEM6_PSEAE : 240- 287: ayrrg RYVEFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeE arlte HEM6_SALTY : 239- 286: lyrrg RYVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpE aalse HEM6_SOYBN : 324- 371: qlrrg RYVEFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeE wklld HEM6_YEAST : 265- 313: airrg RYVEFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrE aklle F 6: 135.9655 7( 7) Y-V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E Occurences: 7(7) HEM6_ECOLI : 240- 286: yrrgr YVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpE aalse HEM6_HUMAN : 292- 339: lrrgr YVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkE aeile HEM6_MOUSE : 292- 339: lrrgr YVEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkE aeile HEM6_PSEAE : 241- 287: yrrgr YVEFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeE arlte HEM6_SALTY : 240- 286: yrrgr YVEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpE aalse HEM6_SOYBN : 325- 371: lrrgr YVEFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeE wklld HEM6_YEAST : 266- 313: irrgr YVEFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrE aklle G 7: 135.0821 7( 7) V-E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2)-[IL] Occurences: 7(7) HEM6_ECOLI : 241- 289: rrgry VEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaaL sefik HEM6_HUMAN : 293- 342: rrgry VEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeI levlr HEM6_MOUSE : 293- 342: rrgry VEFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeI levlr HEM6_PSEAE : 242- 290: rrgry VEFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEarL teyfl HEM6_SALTY : 241- 289: rrgry VEFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaaL sefiq HEM6_SOYBN : 326- 374: rrgry VEFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwkL ldaci HEM6_YEAST : 267- 316: rrgry VEFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEakL levtt H 8: 131.2955 7( 7) E-F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L Occurences: 7(7) HEM6_ECOLI : 242- 289: rgryv EFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-L sefik HEM6_HUMAN : 294- 343: rgryv EFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiL evlrh HEM6_MOUSE : 294- 343: rgryv EFNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiL evlrh HEM6_PSEAE : 243- 290: rgryv EFNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-L teyfl HEM6_SALTY : 242- 289: rgryv EFNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-L sefiq HEM6_SOYBN : 327- 374: rgryv EFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwk-L ldaci HEM6_SOYBN : 327- 375: rgryv EFNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklL dacin HEM6_YEAST : 268- 316: rgryv EFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEak-L levtt HEM6_YEAST : 268- 317: rgryv EFNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklL evttk I 9: 129.3132 7( 7) F-N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST] Occurences: 7(7) HEM6_ECOLI : 243- 290: gryve FNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-LS efikv HEM6_HUMAN : 295- 344: gryve FNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiLE vlrhp HEM6_MOUSE : 295- 344: gryve FNLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiLE vlrhp HEM6_PSEAE : 244- 291: gryve FNLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-LT eyfla HEM6_SALTY : 243- 290: gryve FNLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-LS efiqv HEM6_SOYBN : 328- 376: gryve FNLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklLD acinp HEM6_YEAST : 269- 318: gryve FNLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklLE vttkp J 10: 125.2140 7( 7) Y-P-[KR]-[FY]-K-[EK]-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS] Occurences: 7(7) HEM6_ECOLI : 160- 208: fgedv YPRYKKWCDEYFYLkHRnEqRGIGGLFFDDlNTpDfDrcFaFmqAvgkG ytday HEM6_HUMAN : 212- 260: hgpdl YPKFKKWCDDYFFIaHRgErRGIGGIFFDDlDSpSkEevFrFvqScarA vvpsy HEM6_MOUSE : 212- 260: hgpdi YPKFKKWCDDYFFIvHRgErRGIGGIFFDDlDSpSkEeaFrFvkTcaeA vvpsy HEM6_PSEAE : 161- 209: fgadv YPRYKEWCDRYFHLkHRnEpRGIGGLFFDDlNQwDfDtcFaFirAigdA yiday HEM6_SALTY : 160- 208: fgddv YPRYKKWCDDYFFLkHRnEqRGVGGLFFDDlNTpDfDhcFdFmqAvgnG ytray HEM6_SOYBN : 245- 293: feptf YPRFKKWCDDYFYIkHRgErRGLGGIFFDDlNDyDqEmlLsFatEcanS vipay HEM6_YEAST : 186- 234: hdtal YPRFKKWCDEYFYItHRkEtRGIGGIFFDDyDErDpQeiLnMveDcfdA flpsy K 11: 125.1432 7( 7) N-L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST] Occurences: 7(7) HEM6_ECOLI : 244- 290: ryvef NLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-LS efikv HEM6_HUMAN : 296- 344: ryvef NLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiLE vlrhp HEM6_MOUSE : 296- 344: ryvef NLLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiLE vlrhp HEM6_PSEAE : 245- 291: ryvef NLVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-LT eyfla HEM6_SALTY : 244- 290: ryvef NLVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-LS efiqv HEM6_SOYBN : 329- 376: ryvef NLVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklLD acinp HEM6_YEAST : 270- 318: ryvef NLIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklLE vttkp L 12: 121.0439 7( 7) P-[KR]-[FY]-K-[EK]-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS] Occurences: 7(7) HEM6_ECOLI : 161- 208: gedvy PRYKKWCDEYFYLkHRnEqRGIGGLFFDDlNTpDfDrcFaFmqAvgkG ytday HEM6_HUMAN : 213- 260: gpdly PKFKKWCDDYFFIaHRgErRGIGGIFFDDlDSpSkEevFrFvqScarA vvpsy HEM6_MOUSE : 213- 260: gpdiy PKFKKWCDDYFFIvHRgErRGIGGIFFDDlDSpSkEeaFrFvkTcaeA vvpsy HEM6_PSEAE : 162- 209: gadvy PRYKEWCDRYFHLkHRnEpRGIGGLFFDDlNQwDfDtcFaFirAigdA yiday HEM6_SALTY : 161- 208: gddvy PRYKKWCDDYFFLkHRnEqRGVGGLFFDDlNTpDfDhcFdFmqAvgnG ytray HEM6_SOYBN : 246- 293: eptfy PRFKKWCDDYFYIkHRgErRGLGGIFFDDlNDyDqEmlLsFatEcanS vipay HEM6_YEAST : 187- 234: dtaly PRFKKWCDEYFYItHRkEtRGIGGIFFDDyDErDpQeiLnMveDcfdA flpsy M 13: 120.9731 7( 7) L-[ILV]-[FWY]-D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST] Occurences: 7(7) HEM6_ECOLI : 245- 290: yvefn LVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-LS efikv HEM6_HUMAN : 297- 344: yvefn LLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiLE vlrhp HEM6_MOUSE : 297- 344: yvefn LLYDRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiLE vlrhp HEM6_PSEAE : 246- 291: yvefn LVFDRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-LT eyfla HEM6_SALTY : 245- 290: yvefn LVWDRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-LS efiqv HEM6_SOYBN : 330- 376: yvefn LVYDRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklLD acinp HEM6_YEAST : 271- 318: yvefn LIYDRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklLE vttkp N 14: 117.7904 7( 7) K-[EK]-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS]-x(3)-[AS]-Y Occurences: 7(7) HEM6_ECOLI : 164- 213: vypry KKWCDEYFYLkHRnEqRGIGGLFFDDlNTpDfDrcFaFmqAvgkGytdAY lpive HEM6_HUMAN : 216- 265: lypkf KKWCDDYFFIaHRgErRGIGGIFFDDlDSpSkEevFrFvqScarAvvpSY iplvk HEM6_MOUSE : 216- 265: iypkf KKWCDDYFFIvHRgErRGIGGIFFDDlDSpSkEeaFrFvkTcaeAvvpSY vpivk HEM6_PSEAE : 165- 214: vypry KEWCDRYFHLkHRnEpRGIGGLFFDDlNQwDfDtcFaFirAigdAyidAY lpivq HEM6_SALTY : 164- 213: vypry KKWCDDYFFLkHRnEqRGVGGLFFDDlNTpDfDhcFdFmqAvgnGytrAY lpive HEM6_SOYBN : 249- 298: fyprf KKWCDDYFYIkHRgErRGLGGIFFDDlNDyDqEmlLsFatEcanSvipAY lpiie HEM6_YEAST : 190- 239: lyprf KKWCDEYFYItHRkEtRGIGGIFFDDyDErDpQeiLnMveDcfdAflpSY ltivk O 15: 114.0790 13( 7) K-x(0,1)-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS]-x(3)-[AS]-Y Occurences: 13(7) HEM6_ECOLI : 164- 213: vypry KkWCDEYFYLkHRnEqRGIGGLFFDDlNTpDfDrcFaFmqAvgkGytdAY lpive HEM6_ECOLI : 165- 213: ypryk K-WCDEYFYLkHRnEqRGIGGLFFDDlNTpDfDrcFaFmqAvgkGytdAY lpive HEM6_HUMAN : 216- 265: lypkf KkWCDDYFFIaHRgErRGIGGIFFDDlDSpSkEevFrFvqScarAvvpSY iplvk HEM6_HUMAN : 217- 265: ypkfk K-WCDDYFFIaHRgErRGIGGIFFDDlDSpSkEevFrFvqScarAvvpSY iplvk HEM6_MOUSE : 216- 265: iypkf KkWCDDYFFIvHRgErRGIGGIFFDDlDSpSkEeaFrFvkTcaeAvvpSY vpivk HEM6_MOUSE : 217- 265: ypkfk K-WCDDYFFIvHRgErRGIGGIFFDDlDSpSkEeaFrFvkTcaeAvvpSY vpivk HEM6_PSEAE : 165- 214: vypry KeWCDRYFHLkHRnEpRGIGGLFFDDlNQwDfDtcFaFirAigdAyidAY lpivq HEM6_SALTY : 164- 213: vypry KkWCDDYFFLkHRnEqRGVGGLFFDDlNTpDfDhcFdFmqAvgnGytrAY lpive HEM6_SALTY : 165- 213: ypryk K-WCDDYFFLkHRnEqRGVGGLFFDDlNTpDfDhcFdFmqAvgnGytrAY lpive HEM6_SOYBN : 249- 298: fyprf KkWCDDYFYIkHRgErRGLGGIFFDDlNDyDqEmlLsFatEcanSvipAY lpiie HEM6_SOYBN : 250- 298: yprfk K-WCDDYFYIkHRgErRGLGGIFFDDlNDyDqEmlLsFatEcanSvipAY lpiie HEM6_YEAST : 190- 239: lyprf KkWCDEYFYItHRkEtRGIGGIFFDDyDErDpQeiLnMveDcfdAflpSY ltivk HEM6_YEAST : 191- 239: yprfk K-WCDEYFYItHRkEtRGIGGIFFDDyDErDpQeiLnMveDcfdAflpSY ltivk P 16: 114.0079 7( 7) D-R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV] Occurences: 7(7) HEM6_ECOLI : 248- 295: fnlvw DRGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-LSefikV rdwv HEM6_HUMAN : 300- 349: fnlly DRGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiLEvlrhP rdwvr HEM6_MOUSE : 300- 349: fnlly DRGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiLEvlrhP kdwvh HEM6_PSEAE : 249- 296: fnlvf DRGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-LTeyflA drdwl HEM6_SALTY : 248- 295: fnlvw DRGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-LSefiqV rdwi HEM6_SOYBN : 333- 381: fnlvy DRGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklLDacinP kewi HEM6_YEAST : 274- 323: fnliy DRGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklLEvttkP rewvk Q 17: 112.4894 7( 7) R-G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV]-[DKR] Occurences: 7(7) HEM6_ECOLI : 249- 296: nlvwd RGTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-LSefikVR dwv HEM6_HUMAN : 301- 350: nllyd RGTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiLEvlrhPR dwvr HEM6_MOUSE : 301- 350: nllyd RGTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiLEvlrhPK dwvh HEM6_PSEAE : 250- 297: nlvfd RGTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-LTeyflAD rdwla HEM6_SALTY : 249- 296: nlvwd RGTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-LSefiqVR dwi HEM6_SOYBN : 334- 382: nlvyd RGTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklLDacinPK ewi HEM6_YEAST : 275- 324: nliyd RGTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklLEvttkPR ewvk R 18: 110.9089 7( 7) G-T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV]-[DKR]-[DER] Occurences: 7(7) HEM6_ECOLI : 250- 297: lvwdr GTlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-LSefikVRD wv HEM6_HUMAN : 302- 351: llydr GTkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiLEvlrhPRD wvr HEM6_MOUSE : 302- 351: llydr GTkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiLEvlrhPKD wvh HEM6_PSEAE : 251- 298: lvfdr GTlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-LTeyflADR dwlag HEM6_SALTY : 250- 297: lvwdr GTlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-LSefiqVRD wi HEM6_SOYBN : 335- 383: lvydr GTtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklLDacinPKE wi HEM6_YEAST : 276- 325: liydr GTqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklLEvttkPRE wvk S 19: 109.8999 9( 7) Y-x(1,3)-K-x(0,1)-W-C-D-[DER]-Y-F-[FHY]-[IL]-x-H-R-x-E-x-R-G-[ILV]-G-G-[IL]-F-F-D-D-x-[DN]-[DEQST]-x-[DS]-x-[DEQ]-x(2)-[FL]-x-[FM]-x(2)-[ADEST]-x(3)-[AGS] Occurences: 9(7) HEM6_ECOLI : 160- 208: fgedv YpryKkWCDEYFYLkHRnEqRGIGGLFFDDlNTpDfDrcFaFmqAvgkG ytday HEM6_ECOLI : 163- 208: dvypr Yk--K-WCDEYFYLkHRnEqRGIGGLFFDDlNTpDfDrcFaFmqAvgkG ytday HEM6_HUMAN : 212- 260: hgpdl YpkfKkWCDDYFFIaHRgErRGIGGIFFDDlDSpSkEevFrFvqScarA vvpsy HEM6_MOUSE : 212- 260: hgpdi YpkfKkWCDDYFFIvHRgErRGIGGIFFDDlDSpSkEeaFrFvkTcaeA vvpsy HEM6_PSEAE : 161- 209: fgadv YpryKeWCDRYFHLkHRnEpRGIGGLFFDDlNQwDfDtcFaFirAigdA yiday HEM6_SALTY : 160- 208: fgddv YpryKkWCDDYFFLkHRnEqRGVGGLFFDDlNTpDfDhcFdFmqAvgnG ytray HEM6_SALTY : 163- 208: dvypr Yk--K-WCDDYFFLkHRnEqRGVGGLFFDDlNTpDfDhcFdFmqAvgnG ytray HEM6_SOYBN : 245- 293: feptf YprfKkWCDDYFYIkHRgErRGLGGIFFDDlNDyDqEmlLsFatEcanS vipay HEM6_YEAST : 186- 234: hdtal YprfKkWCDEYFYItHRkEtRGIGGIFFDDyDErDpQeiLnMveDcfdA flpsy T 20: 106.7389 7( 7) T-x-F-G-L-x(2,3)-G-[GS]-R-x-E-S-I-L-[MV]-S-[LM]-P-x(2)-[AV]-[RS]-W-x-Y-x-[HWY]-x-P-x(2)-[GN]-S-x-E-x(2,3)-L-[DEST]-x(4)-[APV]-[DKR]-[DER] Occurences: 7(7) HEM6_ECOLI : 251- 297: vwdrg TlFGLqt-GGRtESILMSMPplVRWeYdYqPkdGSpEaa-LSefikVRD wv HEM6_HUMAN : 303- 351: lydrg TkFGLftpGSRiESILMSLPltARWeYmHsPseNSkEaeiLEvlrhPRD wvr HEM6_MOUSE : 303- 351: lydrg TkFGLftpGSRiESILMSLPltARWeYmHsPpeNSkEaeiLEvlrhPKD wvh HEM6_PSEAE : 252- 298: vfdrg TlFGLqs-GGRtESILMSLPpqVRWgYdWkPepGSeEar-LTeyflADR dwlag HEM6_SALTY : 251- 297: vwdrg TlFGLqt-GGRtESILMSMPplVRWeYdWqPeaGSpEaa-LSefiqVRD wi HEM6_SOYBN : 336- 383: vydrg TtFGLkt-GGRiESILVSLPltARWeYdHkPeeGSeEwklLDacinPKE wi HEM6_YEAST : 277- 325: iydrg TqFGLrtpGSRvESILMSLPehASWlYnHhPapGSrEaklLEvttkPRE wvk Number of patterns evaluated by Pratt:27794 Total running time: 8 seconds