------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file COPPER_FIST PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename COPPER_FIST.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACE1_YEAST 225 AMT1_CANGA 265 CRF1_YARLI 411 MAC1_YEAST 417 YA4B_SCHPO 411 Pratt run started at Thu Feb 6 19:09:20 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 48.0406 5( 5) K-x-A-C-x(2)-C-I-x(2)-H-x(4)-C-x-H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 2: 44.3706 5( 5) I-x(3,4)-K-x-A-C-x(2)-C-I-x(2)-H-x(4)-C-x-H-x(4)-L-x(0,2)-I 3: 43.8706 5( 5) A-C-x(2)-C-I-x(2)-H-x(4)-C-x-H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 4: 39.7005 5( 5) C-x(2)-C-I-x(2)-H-x(4)-C-x-H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 5: 35.5305 5( 5) C-I-x(2)-H-x(4)-C-x-H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 6: 31.3604 5( 5) I-x(2)-H-x(4)-C-x-H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 7: 27.1904 5( 5) H-x(4)-C-x-H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 8: 23.0203 5( 5) C-x-H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 9: 19.8503 5( 5) R-G-x(0,1)-R-x(3,4)-C-x-H 10: 18.8503 5( 5) H-x(4)-L-x(0,2)-I-x(0,2)-K-x-R 11: 16.1802 5( 5) R-x(2)-T-x(0,1)-C-x-H 12: 16.1802 5( 5) G-x(4)-C-x(2)-C-x(2,3)-H 13: 16.1802 5( 5) M-x(3,4)-N-x(4)-A-x(4)-I 14: 15.6802 5( 5) T-x(4,5)-S-x(1,2)-S-x(3)-S 15: 15.6802 6( 5) C-x(2)-G-x(4,5)-C-x(0,1)-H 16: 15.6802 7( 5) C-x(1,2)-C-x(2)-G-x(4,5)-C 17: 15.6802 5( 5) G-x(3,4)-T-x(0,1)-C-x-H 18: 15.6802 6( 5) I-x(3,5)-G-R-P 19: 15.6802 7( 5) G-x(0,1)-R-x(3,4)-C-x-H 20: 15.6802 5( 5) N-x(4,5)-A-x(2,3)-C-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 78.8136 5( 5) K-x-A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] B 2: 74.6435 5( 5) A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] C 3: 70.4734 5( 5) C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] D 4: 66.3034 5( 5) C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] E 5: 65.0690 5( 5) I-x(3,4)-K-x-A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I F 6: 64.5690 5( 5) K-x-A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K G 7: 62.1333 5( 5) I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] H 8: 60.3990 5( 5) A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K I 9: 56.2289 5( 5) C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K J 10: 52.0589 5( 5) C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K K 11: 51.5346 5( 5) H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] L 12: 48.2546 5( 5) M-x(3,4)-N-[GNP]-[NSV]-x(2)-A-[CS]-x(2)-[CS]-I-x-[GST]-x(2)-[AS]-[AS]-[NQT]-[AC]-x(2)-[ENST]-x(3)-[GL] M 13: 47.8888 5( 5) I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K N 14: 47.6653 5( 5) N-x(4,5)-A-x(2,3)-C-I-x(3)-[KR]-[AS]-[ASV]-x-[CD]-x(2)-[NST]-x(3)-[AL]-x(2)-[AILV]-x(3)-[GS]-[QR]-[PS]-x-[PQST] O 15: 37.2901 5( 5) H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K P 16: 35.7140 5( 5) C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Q 17: 31.9501 5( 5) G-x(3)-[AE]-C-x(2)-C-x(2,3)-H-x-[ANSV]-[ANS]-[AQST]-[CT]-x(2)-[ANST] R 18: 31.5439 5( 5) H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] S 19: 29.4904 5( 5) R-[PS]-[APS]-T-x(0,1)-C-x-H-[CNS]-[DHKR]-[DER] T 20: 27.4793 6( 5) I-x(3,5)-G-R-P-x-[PST]-x-[AC]-x-[HKR]-[CD] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 78.8136 5( 5) K-x-A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 8- 43: vingv KyACetCIRGHRAAQCtHTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 8- 41: vingv KyACdsCIKSHKAAQCeHNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 8- 43: viegi KyACerCIRGHRVSSCtHTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 8- 39: ifngn KyACasCIRGHRSSTCrHShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 8- 43: vinnv KmACmkCIRGHRSSTCkHNdreLfpIrpKGRPiSqC ekcri B 2: 74.6435 5( 5) A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 10- 43: ngvky ACetCIRGHRAAQCtHTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 10- 41: ngvky ACdsCIKSHKAAQCeHNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 10- 43: egiky ACerCIRGHRVSSCtHTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 10- 39: ngnky ACasCIRGHRSSTCrHShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 10- 43: nnvkm ACmkCIRGHRSSTCkHNdreLfpIrpKGRPiSqC ekcri C 3: 70.4734 5( 5) C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 11- 43: gvkya CetCIRGHRAAQCtHTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 11- 41: gvkya CdsCIKSHKAAQCeHNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 11- 43: gikya CerCIRGHRVSSCtHTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 11- 39: gnkya CasCIRGHRSSTCrHShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 11- 43: nvkma CmkCIRGHRSSTCkHNdreLfpIrpKGRPiSqC ekcri D 4: 66.3034 5( 5) C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 14- 43: yacet CIRGHRAAQCtHTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 14- 41: yacds CIKSHKAAQCeHNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 14- 43: yacer CIRGHRVSSCtHTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 14- 39: yacas CIRGHRSSTCrHShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 14- 43: macmk CIRGHRSSTCkHNdreLfpIrpKGRPiSqC ekcri E 5: 65.0690 5( 5) I-x(3,4)-K-x-A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I Occurences: 5(5) ACE1_YEAST : 4- 33: mvv Ingv-KyACetCIRGHRAAQCtHTdgpLqmI rrkgr AMT1_CANGA : 4- 32: mvv Ingv-KyACdsCIKSHKAAQCeHNdrpLk-I lkprg CRF1_YARLI : 4- 31: mvv Iegi-KyACerCIRGHRVSSCtHTqqpL--I rikpk CRF1_YARLI : 4- 33: mvv Iegi-KyACerCIRGHRVSSCtHTqqpLirI kpkgr MAC1_YEAST : 3- 31: mi IfngnKyACasCIRGHRSSTCrHShrmL--I kvrtr YA4B_SCHPO : 4- 33: mvv Innv-KmACmkCIRGHRSSTCkHNdreLfpI rpkgr F 6: 64.5690 5( 5) K-x-A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K Occurences: 5(5) ACE1_YEAST : 8- 36: vingv KyACetCIRGHRAAQCtHTdgpLqmIrrK grpst AMT1_CANGA : 8- 34: vingv KyACdsCIKSHKAAQCeHNdrpLk-Il-K prgrp CRF1_YARLI : 8- 36: viegi KyACerCIRGHRVSSCtHTqqpLirIkpK grpat MAC1_YEAST : 8- 32: ifngn KyACasCIRGHRSSTCrHShrmL--I--K vrtrg YA4B_SCHPO : 8- 36: vinnv KmACmkCIRGHRSSTCkHNdreLfpIrpK grpis G 7: 62.1333 5( 5) I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 15- 43: acetc IRGHRAAQCtHTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 15- 41: acdsc IKSHKAAQCeHNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 15- 43: acerc IRGHRVSSCtHTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 15- 39: acasc IRGHRSSTCrHShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 15- 43: acmkc IRGHRSSTCkHNdreLfpIrpKGRPiSqC ekcri H 8: 60.3990 5( 5) A-C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K Occurences: 5(5) ACE1_YEAST : 10- 36: ngvky ACetCIRGHRAAQCtHTdgpLqmIrrK grpst AMT1_CANGA : 10- 34: ngvky ACdsCIKSHKAAQCeHNdrpLk-Il-K prgrp CRF1_YARLI : 10- 36: egiky ACerCIRGHRVSSCtHTqqpLirIkpK grpat MAC1_YEAST : 10- 32: ngnky ACasCIRGHRSSTCrHShrmL--I--K vrtrg YA4B_SCHPO : 10- 36: nnvkm ACmkCIRGHRSSTCkHNdreLfpIrpK grpis I 9: 56.2289 5( 5) C-x(2)-C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K Occurences: 5(5) ACE1_YEAST : 11- 36: gvkya CetCIRGHRAAQCtHTdgpLqmIrrK grpst AMT1_CANGA : 11- 34: gvkya CdsCIKSHKAAQCeHNdrpLk-Il-K prgrp CRF1_YARLI : 11- 36: gikya CerCIRGHRVSSCtHTqqpLirIkpK grpat MAC1_YEAST : 11- 32: gnkya CasCIRGHRSSTCrHShrmL--I--K vrtrg YA4B_SCHPO : 11- 36: nvkma CmkCIRGHRSSTCkHNdreLfpIrpK grpis J 10: 52.0589 5( 5) C-I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K Occurences: 5(5) ACE1_YEAST : 14- 36: yacet CIRGHRAAQCtHTdgpLqmIrrK grpst AMT1_CANGA : 14- 34: yacds CIKSHKAAQCeHNdrpLk-Il-K prgrp CRF1_YARLI : 14- 36: yacer CIRGHRVSSCtHTqqpLirIkpK grpat MAC1_YEAST : 14- 32: yacas CIRGHRSSTCrHShrmL--I--K vrtrg YA4B_SCHPO : 14- 36: macmk CIRGHRSSTCkHNdreLfpIrpK grpis K 11: 51.5346 5( 5) H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 18- 43: tcirg HRAAQCtHTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 18- 41: sciks HKAAQCeHNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 18- 43: rcirg HRVSSCtHTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 18- 39: scirg HRSSTCrHShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 18- 43: kcirg HRSSTCkHNdreLfpIrpKGRPiSqC ekcri L 12: 48.2546 5( 5) M-x(3,4)-N-[GNP]-[NSV]-x(2)-A-[CS]-x(2)-[CS]-I-x-[GST]-x(2)-[AS]-[AS]-[NQT]-[AC]-x(2)-[ENST]-x(3)-[GL] Occurences: 5(5) ACE1_YEAST : 1- 30: Mvvi-NGVkyACetCIrGhrAAQCthTdgpL qmirr AMT1_CANGA : 1- 30: Mvvi-NGVkyACdsCIkShkAAQCehNdrpL kilkp CRF1_YARLI : 349- 379: sdape MsvaaNPSasASasSIqTppSSNAtpEwvqG qqqpc MAC1_YEAST : 1- 30: Miif-NGNkyACasCIrGhrSSTCrhShrmL ikvrt YA4B_SCHPO : 1- 30: Mvvi-NNVkmACmkCIrGhrSSTCkhNdreL fpirp M 13: 47.8888 5( 5) I-[KR]-[GS]-H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K Occurences: 5(5) ACE1_YEAST : 15- 36: acetc IRGHRAAQCtHTdgpLqmIrrK grpst AMT1_CANGA : 15- 34: acdsc IKSHKAAQCeHNdrpLk-Il-K prgrp CRF1_YARLI : 15- 36: acerc IRGHRVSSCtHTqqpLirIkpK grpat MAC1_YEAST : 15- 32: acasc IRGHRSSTCrHShrmL--I--K vrtrg YA4B_SCHPO : 15- 36: acmkc IRGHRSSTCkHNdreLfpIrpK grpis N 14: 47.6653 5( 5) N-x(4,5)-A-x(2,3)-C-I-x(3)-[KR]-[AS]-[ASV]-x-[CD]-x(2)-[NST]-x(3)-[AL]-x(2)-[AILV]-x(3)-[GS]-[QR]-[PS]-x-[PQST] Occurences: 5(5) ACE1_YEAST : 5- 41: mvvi Ngvky-AcetCIrghRAAqCthTdgpLqmIrrkGRPsT tcghc AMT1_CANGA : 5- 41: mvvi Ngvky-AcdsCIkshKAAqCehNdrpLkiLkprGRPpT tcdhc CRF1_YARLI : 93- 129: qvlpp NstttgAng-CIvinKAVlDegSqqqAqqAqqqSQSqQ aqqqq MAC1_YEAST : 5- 41: miif Ngnky-AcasCIrghRSStCrhShrmLikVrtrGRPsP maird YA4B_SCHPO : 5- 41: mvvi Nnvkm-AcmkCIrghRSStCkhNdreLfpIrpkGRPiS qcekc O 15: 37.2901 5( 5) H-[KR]-[ASV]-[AS]-[QST]-C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K Occurences: 5(5) ACE1_YEAST : 18- 36: tcirg HRAAQCtHTdgpLqmIrrK grpst AMT1_CANGA : 18- 34: sciks HKAAQCeHNdrpLk-Il-K prgrp CRF1_YARLI : 18- 36: rcirg HRVSSCtHTqqpLirIkpK grpat MAC1_YEAST : 18- 32: scirg HRSSTCrHShrmL--I--K vrtrg YA4B_SCHPO : 18- 36: kcirg HRSSTCkHNdreLfpIrpK grpis P 16: 35.7140 5( 5) C-x-H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 23- 43: hraaq CtHTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 23- 41: hkaaq CeHNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 23- 43: hrvss CtHTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 23- 39: hrsst CrHShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 23- 43: hrsst CkHNdreLfpIrpKGRPiSqC ekcri Q 17: 31.9501 5( 5) G-x(3)-[AE]-C-x(2)-C-x(2,3)-H-x-[ANSV]-[ANS]-[AQST]-[CT]-x(2)-[ANST] Occurences: 5(5) ACE1_YEAST : 6- 26: mvvin GvkyACetCirgHrAAQCthT dgplq AMT1_CANGA : 6- 26: mvvin GvkyACdsCiksHkAAQCehN drplk CRF1_YARLI : 6- 26: mvvie GikyACerCirgHrVSSCthT qqpli MAC1_YEAST : 6- 26: miifn GnkyACasCirgHrSSTCrhS hrmli YA4B_SCHPO : 331- 350: aacqc GdncEClgClt-HpNNATtlA alnhi R 18: 31.5439 5( 5) H-[NST]-x(3)-L-x(0,2)-I-x(0,2)-K-[GPV]-R-[GPT]-x-[GPST]-x-[CPT] Occurences: 5(5) ACE1_YEAST : 25- 43: aaqct HTdgpLqmIrrKGRPsTtC ghcke AMT1_CANGA : 25- 41: aaqce HNdrpLk-Il-KPRGrPpT tcdhc CRF1_YARLI : 25- 43: vssct HTqqpLirIkpKGRPaTqC lhcre MAC1_YEAST : 25- 39: sstcr HShrmL--I--KVRTrGrP spmai YA4B_SCHPO : 25- 43: sstck HNdreLfpIrpKGRPiSqC ekcri S 19: 29.4904 5( 5) R-[PS]-[APS]-T-x(0,1)-C-x-H-[CNS]-[DHKR]-[DER] Occurences: 5(5) ACE1_YEAST : 38- 48: irrkg RPSTtCgHCKE lrrtk AMT1_CANGA : 38- 48: lkprg RPPTtCdHCKD mrktk CRF1_YARLI : 38- 48: ikpkg RPATqClHCRE arknk MAC1_YEAST : 19- 28: cirgh RSST-CrHSHR mlikv YA4B_SCHPO : 19- 28: cirgh RSST-CkHNDR elfpi T 20: 27.4793 6( 5) I-x(3,5)-G-R-P-x-[PST]-x-[AC]-x-[HKR]-[CD] Occurences: 6(5) ACE1_YEAST : 33- 46: gplqm Irrk--GRPsTtCgHC kelrr AMT1_CANGA : 32- 46: drplk Ilkpr-GRPpTtCdHC kdmrk CRF1_YARLI : 31- 46: tqqpl IrikpkGRPaTqClHC reark CRF1_YARLI : 33- 46: qplir Ikpk--GRPaTqClHC reark MAC1_YEAST : 31- 46: shrml IkvrtrGRPsPmAiRD ailvd YA4B_SCHPO : 33- 46: relfp Irpk--GRPiSqCeKC riari Number of patterns evaluated by Pratt:4906 Total running time: 2 seconds