------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file COMPLEX1_49K PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename COMPLEX1_49K.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HYCE_ECOLI 569 NQO4_PARDE 412 NUCC_MAIZE 393 NUCC_MARPO 392 NUCC_ORYSA 393 NUCC_SECCE 90 NUCC_SYNY3 394 NUCC_TOBAC 393 NUCM_BOVIN 430 NUCM_NEUCR 478 NUCM_PARTE 400 NUCM_SOLTU 36 NUCM_TRYBB 386 NUOD_ECOLI 407 NUOD_SALTY 81 Pratt run started at Thu Feb 6 19:08:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.5102 27( 15) V-x(2)-L-x(1,3)-L 2: 11.5102 25( 15) P-x(2,4)-G-x-L 3: 11.0102 32( 15) A-x(3,4)-L-x(1,3)-L 4: 11.0102 22( 15) L-x(2,4)-G-x(4,5)-A 5: 11.0102 35( 15) I-x(3,4)-L-x(2,4)-G 6: 10.5102 39( 15) L-x(2,4)-L-x(2,4)-G 7: 10.5102 39( 15) V-x(0,2)-L-x(1,3)-L 8: 10.5102 24( 15) A-x(3,5)-V-x(0,2)-L 9: 8.3401 32( 15) G-x(2)-V 10: 8.3401 45( 15) G-x-L 11: 8.3401 27( 15) Q-x-P 12: 8.3401 38( 15) G-x(4)-A 13: 8.3401 45( 15) I-x(4)-L 14: 7.8401 69( 15) G-x(1,2)-V 15: 7.8401 61( 15) E-x(2,3)-G 16: 7.8401 98( 15) L-x(2,3)-G 17: 7.8401 60( 15) V-x(0,1)-L 18: 7.8401 57( 15) V-x(3,4)-G 19: 7.8401 65( 15) R-x(2,3)-L 20: 7.8401 82( 15) L-x(1,2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 14.3474 21( 15) P-x(2,4)-G-x-L-x(3)-[LMV] B 2: 12.2696 19( 15) G-x(3)-[AILP]-A-[ADEGNQ] C 3: 11.5102 27( 15) V-x(2)-L-x(1,3)-L D 4: 11.1773 31( 15) G-x-L-x(3)-[LMV] E 5: 11.0798 20( 15) V-x(0,1)-L-x(3)-[DG] F 6: 11.0102 32( 15) A-x(3,4)-L-x(1,3)-L G 7: 11.0102 22( 15) L-x(2,4)-G-x(4,5)-A H 8: 11.0102 35( 15) I-x(3,4)-L-x(2,4)-G I 9: 10.5102 39( 15) L-x(2,4)-L-x(2,4)-G J 10: 10.5102 39( 15) V-x(0,2)-L-x(1,3)-L K 11: 10.5102 24( 15) A-x(3,5)-V-x(0,2)-L L 12: 10.1985 22( 15) I-x(4)-L-[DENPT] M 13: 10.0456 30( 15) V-x(3,4)-G-x(2)-[DGSV] N 14: 10.0312 37( 15) L-x(2,3)-G-x-[ENQT] O 15: 9.2607 47( 15) L-x(1,2)-V-x(3)-[ADEGNST] P 16: 8.3401 32( 15) G-x(2)-V Q 17: 8.3401 27( 15) Q-x-P R 18: 7.8401 69( 15) G-x(1,2)-V S 19: 7.8401 61( 15) E-x(2,3)-G T 20: 7.8401 65( 15) R-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 14.3474 21( 15) P-x(2,4)-G-x-L-x(3)-[LMV] Occurences: 21(15) HYCE_ECOLI : 408- 419: tradh PfvgyGlLpmeV hseqg NQO4_PARDE : 36- 46: fgpqh Paah-GlLrmvL eldge NUCC_MAIZE : 20- 30: mgpqh Psmh-GvLrliV tldge NUCC_MAIZE : 42- 51: vidce Pil--GyLhrgM ekiae NUCC_MARPO : 19- 29: mgphh Psmh-GvLrliV tldge NUCC_MARPO : 41- 50: vldce Pvl--GyLhrgM ekiae NUCC_ORYSA : 20- 30: mgpqh Psmh-GvLrliV tldge NUCC_ORYSA : 42- 51: vidce Pil--GyLhrgM ekiae NUCC_SECCE : 14- 23: vidce Pil--GyLhrgM ekiae NUCC_SYNY3 : 20- 30: mgphh Psmh-GvLrliV tldge NUCC_SYNY3 : 42- 51: vvdce Pvi--GyLhrgM ekiae NUCC_TOBAC : 20- 30: mgpqh Psmh-GvLrliV tldge NUCC_TOBAC : 42- 51: vvdce Pil--GyLhrgM ekiae NUCM_BOVIN : 56- 66: fgpqh Paah-GvLrlvM elsge NUCM_NEUCR : 104- 114: fgpqh Paah-GvLrliL elkge NUCM_PARTE : 13- 23: fgpqh Paah-GvLrliL qlnge NUCM_PARTE : 373- 384: hlqvl PkmskGhLladL salig NUCM_SOLTU : 19- 29: fgpqh Paah-GvLrlvL emngx NUCM_TRYBB : 20- 30: fgpqh Paah-GvLcclL yfcge NUOD_ECOLI : 380- 391: hlqqi PaairGsLvsdL ivylg NUOD_SALTY : 54- 65: hlqqi PsairGsLvsdL ivylg B 2: 12.2696 19( 15) G-x(3)-[AILP]-A-[ADEGNQ] Occurences: 19(15) HYCE_ECOLI : 7- 13: seekl GqhyLAA lneaf HYCE_ECOLI : 219- 225: fyvhr GmekLAE trmgy NQO4_PARDE : 32- 38: fninf GpqhPAA hgllr NQO4_PARDE : 337- 343: klyte GfkvPAG evyaa NUCC_MAIZE : 50- 56: gylhr GmekIAE nrsii NUCC_MARPO : 49- 55: gylhr GmekIAE nrtiv NUCC_ORYSA : 50- 56: gylhr GmekIAE nrtii NUCC_SECCE : 22- 28: gylhr GmekIAE nrtii NUCC_SYNY3 : 50- 56: gylhr GmekIAE srtni NUCC_TOBAC : 50- 56: gylhr GmekIAE nrtii NUCM_BOVIN : 52- 58: ltlnf GpqhPAA hgvlr NUCM_BOVIN : 395- 401: kikap GfahLAG ldkms NUCM_NEUCR : 100- 106: ytvnf GpqhPAA hgvlr NUCM_NEUCR : 291- 297: rlrgi GvvsAAD alnls NUCM_PARTE : 9- 15: icvnf GpqhPAA hgvlr NUCM_SOLTU : 15- 21: ftlnf GpqhPAA hgvlr NUCM_TRYBB : 16- 22: yrftf GpqhPAA hgvlc NUOD_ECOLI : 332- 338: lqvsw GpvmPAN esfqm NUOD_SALTY : 6- 12: lqvsw GpvmPAQ esfqm C 3: 11.5102 27( 15) V-x(2)-L-x(1,3)-L Occurences: 27(15) HYCE_ECOLI : 278- 285: aille VerLhshL lnlgl HYCE_ECOLI : 356- 363: qmrre VqeLvdvL lstpn NQO4_PARDE : 141- 148: tgamd VgaLtppL wgfea NQO4_PARDE : 202- 208: rfpkl VddLdt-L ltenr NQO4_PARDE : 202- 209: rfpkl VddLdtlL tenri NUCC_MAIZE : 25- 32: psmhg VlrLivtL dgedv NUCC_MAIZE : 103- 108: asyir VimLe--L srias NUCC_MARPO : 24- 31: psmhg VlrLivtL dgedv NUCC_ORYSA : 25- 32: psmhg VlrLivtL dgedv NUCC_ORYSA : 103- 108: asyir VimLe--L srias NUCC_SECCE : 75- 80: asyir VimLe--L srias NUCC_SYNY3 : 25- 32: psmhg VlrLivtL dgedv NUCC_SYNY3 : 103- 108: aqyir VimLe--L nrian NUCC_TOBAC : 25- 32: psmhg VlrLivtL dgedv NUCC_TOBAC : 103- 108: asyir VimLe--L srias NUCM_BOVIN : 44- 49: pkdtl VsnLt--L nfgpq NUCM_BOVIN : 61- 68: paahg VlrLvmeL sgemv NUCM_NEUCR : 109- 114: paahg VlrLi--L elkge NUCM_NEUCR : 109- 116: paahg VlrLileL kgeei NUCM_NEUCR : 209- 216: shamd VgaLtpfL wgfee NUCM_PARTE : 18- 23: paahg VlrLi--L qlnge NUCM_PARTE : 18- 25: paahg VlrLilqL ngevv NUCM_PARTE : 164- 171: lnfls VklLtdiL efnnn NUCM_SOLTU : 24- 29: paahg VlrLv--L emngx NUCM_TRYBB : 5- 10: mlfl VvfLh--L yrftf NUCM_TRYBB : 122- 128: ciscm VldLgc-L spllw NUCM_TRYBB : 172- 177: fvfgf VdfLl--L liisc NUCM_TRYBB : 172- 178: fvfgf VdfLll-L iiscl NUOD_ECOLI : 278- 285: rvmlk VeeLrqsL rileq NUOD_ECOLI : 388- 395: irgsl VsdLivyL gsidf NUOD_SALTY : 62- 69: irgsl VsdLivyL gsidf D 4: 11.1773 31( 15) G-x-L-x(3)-[LMV] Occurences: 31(15) HYCE_ECOLI : 413- 419: pfvgy GlLpmeV hseqg NQO4_PARDE : 40- 46: hpaah GlLrmvL eldge NQO4_PARDE : 142- 148: gamdv GaLtppL wgfea NUCC_MAIZE : 24- 30: hpsmh GvLrliV tldge NUCC_MAIZE : 45- 51: cepil GyLhrgM ekiae NUCC_MAIZE : 335- 341: veapk GeLgiyL vgdds NUCC_MARPO : 23- 29: hpsmh GvLrliV tldge NUCC_MARPO : 44- 50: cepvl GyLhrgM ekiae NUCC_MARPO : 334- 340: veapk GeLgifL igdds NUCC_ORYSA : 24- 30: hpsmh GvLrliV tldge NUCC_ORYSA : 45- 51: cepil GyLhrgM ekiae NUCC_ORYSA : 335- 341: veapk GeLgiyL vgdds NUCC_SECCE : 17- 23: cepil GyLhrgM ekiae NUCC_SYNY3 : 24- 30: hpsmh GvLrliV tldge NUCC_SYNY3 : 45- 51: cepvi GyLhrgM ekiae NUCC_TOBAC : 24- 30: hpsmh GvLrliV tldge NUCC_TOBAC : 45- 51: cepil GyLhrgM ekiae NUCC_TOBAC : 335- 341: veapk GeLgifL igdqs NUCM_BOVIN : 60- 66: hpaah GvLrlvM elsge NUCM_NEUCR : 108- 114: hpaah GvLrliL elkge NUCM_NEUCR : 210- 216: hamdv GaLtpfL wgfee NUCM_PARTE : 17- 23: hpaah GvLrliL qlnge NUCM_PARTE : 378- 384: pkmsk GhLladL salig NUCM_SOLTU : 23- 29: hpaah GvLrlvL emngx NUCM_TRYBB : 24- 30: hpaah GvLcclL yfcge NUCM_TRYBB : 126- 132: mvldl GcLsplL wsfee NUCM_TRYBB : 162- 168: fmvll GiLddfV fgfvd NUCM_TRYBB : 221- 227: fnsls GvLsrsL gmvwd NUCM_TRYBB : 364- 370: dvclr GfLlhdL vavlg NUOD_ECOLI : 385- 391: paair GsLvsdL ivylg NUOD_SALTY : 59- 65: psair GsLvsdL ivylg E 5: 11.0798 20( 15) V-x(0,1)-L-x(3)-[DG] Occurences: 20(15) HYCE_ECOLI : 59- 64: ggwls V-LfgnD erkln NQO4_PARDE : 45- 50: gllrm V-LeldG eiver NQO4_PARDE : 358- 364: kgefg VyLvadG tnkpw NUCC_MAIZE : 30- 36: vlrli VtLdgeD vidce NUCC_MARPO : 29- 35: vlrli VtLdgeD vldce NUCC_ORYSA : 30- 36: vlrli VtLdgeD vidce NUCC_SECCE : 2- 8: i VtLdgeD vidce NUCC_SYNY3 : 30- 36: vlrli VtLdgeD vvdce NUCC_TOBAC : 30- 36: vlrli VtLdgeD vvdce NUCM_BOVIN : 258- 264: ygfsg VmLrgsG iqwdl NUCM_BOVIN : 376- 382: kgefg VyLvsdG ssrpy NUCM_NEUCR : 128- 134: radph VgLlhrG teklc NUCM_NEUCR : 306- 312: lsftg VmLrgsG vpwdi NUCM_PARTE : 346- 352: kgefg VtLvsdG snkpy NUCM_SOLTU : 28- 33: gvlrl V-LemnG xvv NUCM_TRYBB : 159- 165: hlafm VlLgilD dfvfg NUCM_TRYBB : 373- 378: hdlva V-LgniD vvfgs NUOD_ECOLI : 41- 46: gafri V-LqldG eeivd NUOD_ECOLI : 393- 399: vsdli VyLgsiD fvmsd NUOD_SALTY : 67- 73: vsdli VyLgsiD fvmsd F 6: 11.0102 32( 15) A-x(3,4)-L-x(1,3)-L Occurences: 32(15) HYCE_ECOLI : 504- 513: raaty AnwptLrymL rgntv NQO4_PARDE : 37- 46: gpqhp AahglLrmvL eldge NQO4_PARDE : 38- 46: pqhpa Ahgl-LrmvL eldge NUCC_MAIZE : 112- 118: elsri Ashl-Lw--L gpfma NUCC_MAIZE : 332- 341: yvrve ApkgeLgiyL vgdds NUCC_MARPO : 111- 117: elsri Ashl-Lw--L gpfma NUCC_MARPO : 331- 340: yvrve ApkgeLgifL igdds NUCC_ORYSA : 112- 118: elsri Ashl-Lw--L gpfma NUCC_ORYSA : 332- 341: yarve ApkgeLgiyL vgdds NUCC_SECCE : 84- 90: elsri Ashl-Lw--L NUCC_SYNY3 : 112- 118: elnri Anhl-Lw--L gpfma NUCC_SYNY3 : 358- 366: wkirs AdfnnLqi-L philk NUCC_TOBAC : 112- 118: elsri Ashl-Lw--L gpfma NUCC_TOBAC : 332- 341: yvrve ApkgeLgifL igdqs NUCM_BOVIN : 57- 64: gpqhp AahgvLr--L vmels NUCM_BOVIN : 58- 64: pqhpa Ahgv-Lr--L vmels NUCM_NEUCR : 62- 70: tgddf ApnndLyg-L ealka NUCM_NEUCR : 105- 112: gpqhp AahgvLr--L ilelk NUCM_NEUCR : 105- 114: gpqhp AahgvLrliL elkge NUCM_NEUCR : 106- 112: pqhpa Ahgv-Lr--L ilelk NUCM_NEUCR : 106- 114: pqhpa Ahgv-LrliL elkge NUCM_NEUCR : 295- 301: igvvs Aada-Ln--L sftgv NUCM_PARTE : 14- 21: gpqhp AahgvLr--L ilqln NUCM_PARTE : 14- 23: gpqhp AahgvLrliL qlnge NUCM_PARTE : 15- 21: pqhpa Ahgv-Lr--L ilqln NUCM_PARTE : 15- 23: pqhpa Ahgv-LrliL qlnge NUCM_PARTE : 365- 372: kvrsp Ayhh-Lqv-L pkmsk NUCM_SOLTU : 20- 27: gpqhp AahgvLr--L vlemn NUCM_SOLTU : 20- 29: gpqhp AahgvLrlvL emngx NUCM_SOLTU : 21- 27: pqhpa Ahgv-Lr--L vlemn NUCM_SOLTU : 21- 29: pqhpa Ahgv-LrlvL emngx NUCM_TRYBB : 21- 29: gpqhp AahgvLcc-L lyfcg NUCM_TRYBB : 21- 30: gpqhp AahgvLcclL yfcge NUCM_TRYBB : 22- 29: pqhpa Ahgv-Lcc-L lyfcg NUCM_TRYBB : 22- 30: pqhpa Ahgv-LcclL yfcge NUCM_TRYBB : 156- 164: crmhl AfmvlLgi-L ddfvf NUCM_TRYBB : 156- 164: crmhl Afmv-LlgiL ddfvf NUCM_TRYBB : 257- 263: cfigd Afdr-Lf--L rlfdm NUCM_TRYBB : 257- 265: cfigd Afdr-LflrL fdmrm NUOD_ECOLI : 37- 44: psahg AfrivLq--L dgeei NUOD_ECOLI : 382- 391: qqipa AirgsLvsdL ivylg NUOD_SALTY : 56- 65: qqips AirgsLvsdL ivylg G 7: 11.0102 22( 15) L-x(2,4)-G-x(4,5)-A Occurences: 22(15) HYCE_ECOLI : 199- 209: pghfr Lfvd-GeniidA dyrlf NQO4_PARDE : 46- 56: llrmv Leld-GeiverA dphig NQO4_PARDE : 128- 138: eigri LnhlmGvttg-A mdvga NQO4_PARDE : 219- 228: ifkqr Lvdi-Givte-A daldw NQO4_PARDE : 333- 342: ihhfk Lyte-Gfkvp-A gevya NUCC_MAIZE : 47- 55: pilgy Lhr--Gmeki-A enrsi NUCC_MARPO : 46- 54: pvlgy Lhr--Gmeki-A enrti NUCC_ORYSA : 47- 55: pilgy Lhr--Gmeki-A enrti NUCC_SECCE : 19- 27: pilgy Lhr--Gmeki-A enrti NUCC_SYNY3 : 47- 55: pvigy Lhr--Gmeki-A esrtn NUCC_TOBAC : 47- 55: pilgy Lhr--Gmeki-A enrti NUCM_BOVIN : 47- 57: tlvsn LtlnfGpqhp-A ahgvl NUCM_BOVIN : 47- 58: tlvsn LtlnfGpqhpaA hgvlr NUCM_BOVIN : 49- 57: vsnlt Lnf--Gpqhp-A ahgvl NUCM_BOVIN : 49- 58: vsnlt Lnf--GpqhpaA hgvlr NUCM_NEUCR : 114- 124: vlrli Lelk-GeeivrA dphvg NUCM_NEUCR : 287- 296: iwidr Lrgi-Gvvsa-A dalnl NUCM_NEUCR : 453- 462: ggfdh Lsr--GhmladA vavig NUCM_PARTE : 210- 219: sykdc Ldf--GltgvmA rstgi NUCM_SOLTU : 12- 20: iqnft Lnf--Gpqhp-A ahgvl NUCM_SOLTU : 12- 21: iqnft Lnf--GpqhpaA hgvlr NUCM_TRYBB : 147- 156: mtffd Lcc--GcrmhlA fmvll NUOD_ECOLI : 25- 34: edfmf Lnl--GpnhpsA hgafr NUOD_ECOLI : 327- 337: lithf LqvswGpvmp-A nesfq NUOD_SALTY : 1- 11: LqvswGpvmp-A qesfq H 8: 11.0102 35( 15) I-x(3,4)-L-x(2,4)-G Occurences: 35(15) HYCE_ECOLI : 445- 454: talnm Idyg-LdnlpG gplmv NQO4_PARDE : 5- 13: mdgd IrknsLdd--G smdal NQO4_PARDE : 124- 133: vlyse Igri-LnhlmG vttga NQO4_PARDE : 214- 223: ltenr IfkqrLvdi-G ivtea NQO4_PARDE : 328- 337: dmesl IhhfkLyte-G fkvpa NQO4_PARDE : 399- 408: advpa Iiat-LdivfG evdr NUCC_MAIZE : 43- 50: idcep Ilgy-Lhr--G mekia NUCC_MAIZE : 111- 119: lelsr IashlLwl--G pfmad NUCC_MAIZE : 111- 119: lelsr Iash-Llwl-G pfmad NUCC_MARPO : 110- 118: lelsr IashlLwl--G pfmad NUCC_MARPO : 110- 118: lelsr Iash-Llwl-G pfmad NUCC_MARPO : 273- 283: kesvk IiqqaLkaipG gpfen NUCC_MARPO : 274- 283: esvki Iqqa-LkaipG gpfen NUCC_MARPO : 363- 370: finlq Ilpq-Lvk--G mklad NUCC_ORYSA : 43- 50: idcep Ilgy-Lhr--G mekia NUCC_ORYSA : 111- 119: lelsr IashlLwl--G pfmad NUCC_ORYSA : 111- 119: lelsr Iash-Llwl-G pfmad NUCC_SECCE : 15- 22: idcep Ilgy-Lhr--G mekia NUCC_SYNY3 : 111- 119: lelnr IanhlLwl--G pfmad NUCC_SYNY3 : 111- 119: lelnr Ianh-Llwl-G pfmad NUCC_SYNY3 : 275- 285: resvk IirqaLkampG gpyen NUCC_SYNY3 : 276- 285: esvki Irqa-LkampG gpyen NUCC_TOBAC : 43- 50: vdcep Ilgy-Lhr--G mekia NUCC_TOBAC : 111- 119: lelsr IashlLwl--G pfmad NUCC_TOBAC : 111- 119: lelsr Iash-Llwl-G pfmad NUCC_TOBAC : 274- 284: tesik IiqqaLegipG gpyen NUCC_TOBAC : 275- 284: esiki Iqqa-LegipG gpyen NUCM_BOVIN : 346- 355: smesl IhhfkLyte-G yqvpp NUCM_NEUCR : 282- 291: ltdnr IwidrLrgi-G vvsaa NUCM_NEUCR : 394- 403: nmeal IhhflLytk-G yavpp NUCM_NEUCR : 394- 403: nmeal Ihhf-LlytkG yavpp NUCM_NEUCR : 466- 474: davav IgtmdLvf--G evdr NUCM_PARTE : 35- 43: vekmd IhiglLhr--G seklm NUCM_PARTE : 35- 43: vekmd Ihig-Llhr-G seklm NUCM_PARTE : 112- 120: nhmla IachaLdi--G smssi NUCM_PARTE : 193- 202: ltynk IwkqrLvni-G sisyk NUCM_SOLTU : 7- 15: tknrq IqnftLnf--G pqhpa NUCM_TRYBB : 43- 50: vyidc Iigy-Lhr--G teklc NUCM_TRYBB : 118- 126: ngllc IscmvLdl--G clspl NUOD_ECOLI : 323- 332: hietl Ithf-LqvswG pvmpa NUOD_ECOLI : 350- 359: eatkg InsyyLtsd-G stmsy NUOD_SALTY : 24- 33: eatkg InsyyLtsd-G stmsy I 9: 10.5102 39( 15) L-x(2,4)-L-x(2,4)-G Occurences: 39(15) HYCE_ECOLI : 281- 289: lever LhshlLnl--G lachf HYCE_ECOLI : 281- 289: lever Lhsh-Llnl-G lachf HYCE_ECOLI : 449- 455: midyg Ldn--Lpg--G plmve HYCE_ECOLI : 452- 461: ygldn LpggpLmve-G ftyip NQO4_PARDE : 41- 50: paahg LlrmvLeld-G eiver NQO4_PARDE : 42- 50: aahgl Lrmv-Leld-G eiver NQO4_PARDE : 116- 125: prras Lirv-LyseiG rilnh NUCC_MAIZE : 44- 50: dcepi Lgy--Lhr--G mekia NUCC_MAIZE : 219- 228: avnwg LsgpmLras-G iqwdl NUCC_MAIZE : 258- 266: kegds Lary-Lvrv-G emres NUCC_MARPO : 43- 49: dcepv Lgy--Lhr--G mekia NUCC_MARPO : 218- 227: ainwg LsgpmLras-G vqwdl NUCC_MARPO : 257- 265: kegds Lary-Lvri-G emkes NUCC_MARPO : 289- 297: gpfen LearrLnq--G knsew NUCC_MARPO : 364- 370: inlqi Lpq--Lvk--G mklad NUCC_ORYSA : 44- 50: dcepi Lgy--Lhr--G mekia NUCC_ORYSA : 219- 228: avnwg LsgpmLras-G iqwdl NUCC_ORYSA : 258- 266: kegds Lary-Lvri-G emres NUCC_SECCE : 16- 22: dcepi Lgy--Lhr--G mekia NUCC_SYNY3 : 220- 229: ainwg LsgpmLrgs-G vkwdl NUCC_SYNY3 : 291- 299: gpyen LeakrLqe--G kksew NUCC_TOBAC : 44- 50: dcepi Lgy--Lhr--G mekia NUCC_TOBAC : 219- 228: alnwg LsgpmLras-G iewdl NUCC_TOBAC : 258- 266: regds Lary-Lvri-G emtes NUCM_BOVIN : 43- 52: ppkdt Lvsn-LtlnfG pqhpa NUCM_NEUCR : 70- 77: ndlyg Lea--Lkad-G aprvp NUCM_NEUCR : 110- 118: aahgv Lrli-Lelk-G eeivr NUCM_NEUCR : 393- 403: enmea LihhfLlytkG yavpp NUCM_PARTE : 19- 27: aahgv Lrli-Lqln-G evvek NUCM_PARTE : 380- 389: mskgh Llad-LsaliG tidiv NUCM_PARTE : 381- 389: skghl Lad--LsaliG tidiv NUCM_SOLTU : 25- 33: aahgv Lrlv-Lemn-G xvv NUCM_TRYBB : 26- 34: aahgv Lccl-Lyfc-G efivy NUCM_TRYBB : 26- 34: aahgv Lcc--LlyfcG efivy NUCM_TRYBB : 198- 205: fvgnr Lfy--Lrlr-G lsffd NUCM_TRYBB : 219- 228: lvfns Lsgv-LsrslG mvwdc NUCM_TRYBB : 366- 375: clrgf Llhd-LvavlG nidvv NUCM_TRYBB : 367- 375: lrgfl Lhd--LvavlG nidvv NUOD_ECOLI : 322- 332: qhiet LithfLqvswG pvmpa NUOD_ECOLI : 387- 396: airgs Lvsd-LivylG sidfv NUOD_SALTY : 61- 70: airgs Lvsd-LivylG sidfv J 10: 10.5102 39( 15) V-x(0,2)-L-x(1,3)-L Occurences: 39(15) HYCE_ECOLI : 278- 285: aille VerLhshL lnlgl HYCE_ECOLI : 356- 363: qmrre VqeLvdvL lstpn NQO4_PARDE : 45- 48: gllrm V--Le--L dgeiv NQO4_PARDE : 141- 148: tgamd VgaLtppL wgfea NQO4_PARDE : 202- 208: rfpkl VddLdt-L ltenr NQO4_PARDE : 202- 209: rfpkl VddLdtlL tenri NUCC_MAIZE : 25- 28: psmhg V--Lr--L ivtld NUCC_MAIZE : 25- 32: psmhg VlrLivtL dgedv NUCC_MAIZE : 103- 108: asyir VimLe--L srias NUCC_MARPO : 24- 27: psmhg V--Lr--L ivtld NUCC_MARPO : 24- 31: psmhg VlrLivtL dgedv NUCC_MARPO : 42- 46: ldcep V--Lgy-L hrgme NUCC_ORYSA : 25- 28: psmhg V--Lr--L ivtld NUCC_ORYSA : 25- 32: psmhg VlrLivtL dgedv NUCC_ORYSA : 103- 108: asyir VimLe--L srias NUCC_SECCE : 75- 80: asyir VimLe--L srias NUCC_SYNY3 : 25- 28: psmhg V--Lr--L ivtld NUCC_SYNY3 : 25- 32: psmhg VlrLivtL dgedv NUCC_SYNY3 : 103- 108: aqyir VimLe--L nrian NUCC_TOBAC : 25- 28: psmhg V--Lr--L ivtld NUCC_TOBAC : 25- 32: psmhg VlrLivtL dgedv NUCC_TOBAC : 103- 108: asyir VimLe--L srias NUCM_BOVIN : 44- 49: pkdtl VsnLt--L nfgpq NUCM_BOVIN : 61- 64: paahg V--Lr--L vmels NUCM_BOVIN : 61- 68: paahg VlrLvmeL sgemv NUCM_NEUCR : 109- 112: paahg V--Lr--L ilelk NUCM_NEUCR : 109- 114: paahg VlrLi--L elkge NUCM_NEUCR : 109- 114: paahg V--LrliL elkge NUCM_NEUCR : 109- 116: paahg VlrLileL kgeei NUCM_NEUCR : 209- 216: shamd VgaLtpfL wgfee NUCM_PARTE : 18- 21: paahg V--Lr--L ilqln NUCM_PARTE : 18- 23: paahg VlrLi--L qlnge NUCM_PARTE : 18- 23: paahg V--LrliL qlnge NUCM_PARTE : 18- 25: paahg VlrLilqL ngevv NUCM_PARTE : 157- 162: yrpne Vn-Lnf-L svkll NUCM_PARTE : 164- 171: lnfls VklLtdiL efnnn NUCM_SOLTU : 24- 27: paahg V--Lr--L vlemn NUCM_SOLTU : 24- 29: paahg VlrLv--L emngx NUCM_SOLTU : 24- 29: paahg V--LrlvL emngx NUCM_TRYBB : 5- 10: mlfl VvfLh--L yrftf NUCM_TRYBB : 6- 10: mlflv Vf-Lh--L yrftf NUCM_TRYBB : 25- 29: paahg V--Lcc-L lyfcg NUCM_TRYBB : 25- 30: paahg V--LcclL yfcge NUCM_TRYBB : 122- 125: ciscm V--Ld--L gclsp NUCM_TRYBB : 122- 128: ciscm VldLgc-L spllw NUCM_TRYBB : 159- 164: hlafm Vl-Lgi-L ddfvf NUCM_TRYBB : 159- 164: hlafm V--LlgiL ddfvf NUCM_TRYBB : 172- 177: fvfgf VdfLl--L liisc NUCM_TRYBB : 172- 178: fvfgf VdfLll-L iiscl NUCM_TRYBB : 222- 227: nslsg V--LsrsL gmvwd NUCM_TRYBB : 289- 295: fvfgf Vc-LfdyL ycdit NUCM_TRYBB : 339- 345: llcfc Vg-LcsrL rlrca NUCM_TRYBB : 360- 366: iclld Vc-LrgfL lhdlv NUOD_ECOLI : 41- 44: gafri V--Lq--L dgeei NUOD_ECOLI : 115- 120: vnvir Vm-Lse-L frins NUOD_ECOLI : 278- 285: rvmlk VeeLrqsL rileq NUOD_ECOLI : 388- 395: irgsl VsdLivyL gsidf NUOD_SALTY : 62- 69: irgsl VsdLivyL gsidf K 11: 10.5102 24( 15) A-x(3,5)-V-x(0,2)-L Occurences: 24(15) HYCE_ECOLI : 17- 23: aalne Afpgv-V--L dhawq HYCE_ECOLI : 17- 23: aalne Afpg--Vv-L dhawq HYCE_ECOLI : 73- 78: lnghy Avyy--V--L smekg HYCE_ECOLI : 273- 281: aqmir Aille-VerL hshll NQO4_PARDE : 114- 120: viprr Aslir-V--L yseig NQO4_PARDE : 300- 307: vqklr AepagdV--L argkl NUCC_MAIZE : 98- 106: qipkr Asyir-VimL elsri NUCC_MARPO : 54- 63: gmeki AenrtiVqyL pyvtr NUCC_ORYSA : 98- 106: qipqr Asyir-VimL elsri NUCC_SECCE : 70- 78: qipqr Asyir-VimL elsri NUCC_SYNY3 : 98- 106: evpkr Aqyir-VimL elnri NUCC_SYNY3 : 324- 331: tfkip Agehy-Vr-L esgkg NUCC_TOBAC : 98- 106: qvpkr Asyir-VimL elsri NUCM_BOVIN : 57- 62: gpqhp Aahg--V--L rlvme NUCM_BOVIN : 57- 64: gpqhp Aahg--VlrL vmels NUCM_BOVIN : 117- 125: mcneq Aysla-VekL lnirp NUCM_BOVIN : 134- 140: rpppr Aqwir-V--L fgeit NUCM_NEUCR : 105- 110: gpqhp Aahg--V--L rlile NUCM_NEUCR : 105- 112: gpqhp Aahg--VlrL ilelk NUCM_NEUCR : 124- 130: eeivr Adph--Vg-L lhrgt NUCM_NEUCR : 124- 131: eeivr Adph--VglL hrgte NUCM_PARTE : 14- 19: gpqhp Aahg--V--L rlilq NUCM_PARTE : 14- 21: gpqhp Aahg--VlrL ilqln NUCM_PARTE : 365- 372: kvrsp AyhhlqV--L pkmsk NUCM_SOLTU : 20- 25: gpqhp Aahg--V--L rlvle NUCM_SOLTU : 20- 27: gpqhp Aahg--VlrL vlemn NUCM_TRYBB : 21- 26: gpqhp Aahg--V--L cclly NUOD_ECOLI : 37- 42: psahg Afri--V--L qldge NUOD_ECOLI : 37- 44: psahg Afri--VlqL dgeei NUOD_ECOLI : 382- 391: qqipa AirgslVsdL ivylg NUOD_SALTY : 56- 65: qqips AirgslVsdL ivylg L 12: 10.1985 22( 15) I-x(4)-L-[DENPT] Occurences: 22(15) HYCE_ECOLI : 271- 277: eraqm IrailLE verlh NQO4_PARDE : 5- 11: mdgd IrknsLD dgsmd NUCC_MAIZE : 101- 107: krasy IrvimLE lsria NUCC_MAIZE : 360- 366: rppgf InlqiLP qlvkk NUCC_MARPO : 100- 106: krasy IriimLE lsria NUCC_MARPO : 359- 365: rspgf InlqiLP qlvkg NUCC_ORYSA : 101- 107: qrasy IrvimLE lsria NUCC_ORYSA : 360- 366: rppgf InlqiLP qlvkk NUCC_SECCE : 73- 79: qrasy IrvimLE lsria NUCC_SYNY3 : 101- 107: kraqy IrvimLE lnria NUCC_TOBAC : 101- 107: krasy IrvimLE lsria NUCC_TOBAC : 274- 280: tesik IiqqaLE gipgg NUCC_TOBAC : 360- 366: rppgf InlqiLP qlvkr NUCM_BOVIN : 310- 316: rqsir IisqcLN kmppg NUCM_NEUCR : 251- 257: gvhqd IplglLD diymw NUCM_NEUCR : 358- 364: rqslr IihqcLN kmpag NUCM_PARTE : 112- 118: nhmla IachaLD igsms NUCM_SOLTU : 7- 13: tknrq IqnftLN fgpqh NUCM_TRYBB : 118- 124: ngllc IscmvLD lgcls NUOD_ECOLI : 287- 293: rqslr IleqcLN nmpeg NUOD_ECOLI : 350- 356: eatkg InsyyLT sdgst NUOD_SALTY : 24- 30: eatkg InsyyLT sdgst M 13: 10.0456 30( 15) V-x(3,4)-G-x(2)-[DGSV] Occurences: 30(15) HYCE_ECOLI : 256- 264: aytts VenamGiqV peraq HYCE_ECOLI : 419- 427: llpme VhseqGcdV isrlk NQO4_PARDE : 45- 53: gllrm VleldGeiV eradp NQO4_PARDE : 349- 357: evyaa VegpkGefG vylva NUCC_MAIZE : 30- 37: vlrli Vtld-GedV idcep NUCC_MAIZE : 203- 210: ifler Vegv-GfiS geeav NUCC_MAIZE : 330- 338: elyvr VeapkGelG iylvg NUCC_MARPO : 29- 36: vlrli Vtld-GedV ldcep NUCC_MARPO : 164- 172: iggva VdlpyGwiD kcldf NUCC_MARPO : 329- 337: ehyvr VeapkGelG iflig NUCC_ORYSA : 30- 37: vlrli Vtld-GedV idcep NUCC_ORYSA : 203- 210: ifler Vegv-GfiS geeav NUCC_ORYSA : 330- 338: elyar VeapkGelG iylvg NUCC_SECCE : 2- 9: i Vtld-GedV idcep NUCC_SYNY3 : 30- 37: vlrli Vtld-GedV vdcep NUCC_SYNY3 : 166- 174: vggva VdlpyGwnD kcedf NUCC_TOBAC : 30- 37: vlrli Vtld-GedV vdcep NUCC_TOBAC : 203- 210: ifler Vegv-GiiG gdeal NUCC_TOBAC : 330- 338: elyvr VeapkGelG iflig NUCM_BOVIN : 65- 73: gvlrl VmelsGemV rkcdp NUCM_BOVIN : 414- 422: hmlad VvaiiGtqD ivfge NUCM_BOVIN : 415- 422: mladv Vaii-GtqD ivfge NUCM_NEUCR : 306- 313: lsftg Vmlr-GsgV pwdir NUCM_NEUCR : 463- 470: mlada Vavi-GtmD lvfge NUCM_PARTE : 337- 345: wtyqa VespkGefG vtlvs NUCM_SOLTU : 28- 36: gvlrl VlemnGxvV NUCM_TRYBB : 122- 129: ciscm Vldl-GclS pllws NUCM_TRYBB : 371- 378: llhdl Vavl-GniD vvfgs NUOD_ECOLI : 98- 106: pyvla VeklaGitV pdrvn NUOD_SALTY : 18- 26: esfqm VeatkGinS yylts N 14: 10.0312 37( 15) L-x(2,3)-G-x-[ENQT] Occurences: 37(15) HYCE_ECOLI : 199- 205: pghfr LfvdGeN iidad HYCE_ECOLI : 457- 463: lpggp LmveGfT yiphr NQO4_PARDE : 62- 68: dphig LlhrGtE klmes NQO4_PARDE : 63- 68: phigl Lhr-GtE klmes NQO4_PARDE : 231- 236: teada Ldw-GyT gvmvr NQO4_PARDE : 360- 366: efgvy LvadGtN kpwra NUCC_MAIZE : 47- 52: pilgy Lhr-GmE kiaen NUCC_MAIZE : 224- 230: lsgpm LrasGiQ wdlrk NUCC_MARPO : 46- 51: pvlgy Lhr-GmE kiaen NUCC_MARPO : 223- 229: lsgpm LrasGvQ wdlrk NUCC_MARPO : 294- 299: learr Lnq-GkN sewnl NUCC_ORYSA : 47- 52: pilgy Lhr-GmE kiaen NUCC_ORYSA : 224- 230: lsgpm LrasGiQ wdlrk NUCC_SECCE : 19- 24: pilgy Lhr-GmE kiaen NUCC_SYNY3 : 47- 52: pvigy Lhr-GmE kiaes NUCC_SYNY3 : 168- 173: gvavd Lpy-GwN dkced NUCC_TOBAC : 47- 52: pilgy Lhr-GmE kiaen NUCC_TOBAC : 224- 230: lsgpm LrasGiE wdlrk NUCM_BOVIN : 49- 54: vsnlt Lnf-GpQ hpaah NUCM_BOVIN : 82- 88: dphig LlhrGtE kliey NUCM_BOVIN : 83- 88: phigl Lhr-GtE kliey NUCM_BOVIN : 260- 266: fsgvm LrgsGiQ wdlrk NUCM_BOVIN : 351- 357: ihhfk LyteGyQ vppga NUCM_NEUCR : 114- 120: vlrli LelkGeE ivrad NUCM_NEUCR : 130- 136: dphvg LlhrGtE klcey NUCM_NEUCR : 131- 136: phvgl Lhr-GtE klcey NUCM_PARTE : 39- 45: dihig LlhrGsE klmet NUCM_PARTE : 40- 45: ihigl Lhr-GsE klmet NUCM_PARTE : 210- 215: sykdc Ldf-GlT gvmar NUCM_PARTE : 348- 354: efgvt LvsdGsN kpyrc NUCM_SOLTU : 12- 17: iqnft Lnf-GpQ hpaah NUCM_TRYBB : 47- 52: ciigy Lhr-GtE klcey NUOD_ECOLI : 25- 30: edfmf Lnl-GpN hpsah NUOD_ECOLI : 42- 48: afriv LqldGeE ivdcv NUOD_ECOLI : 227- 232: arkea Lew-GtT gaglr NUOD_ECOLI : 355- 361: insyy LtsdGsT msyrt NUOD_SALTY : 29- 35: insyy LtsdGsT msyrt O 15: 9.2607 47( 15) L-x(1,2)-V-x(3)-[ADEGNST] Occurences: 47(15) HYCE_ECOLI : 57- 63: kqggw Ls-VlfgN derkl HYCE_ECOLI : 124- 131: rdmyg LipVglpD errlv HYCE_ECOLI : 187- 193: vpigp Lh-VtsdE pghfr HYCE_ECOLI : 199- 205: pghfr Lf-VdgeN iidad HYCE_ECOLI : 359- 366: revqe LvdVllsT pnmeq HYCE_ECOLI : 431- 437: dvisr Lk-VrinE vytal HYCE_ECOLI : 457- 463: lpggp Lm-VegfT yiphr NQO4_PARDE : 42- 49: aahgl LrmVlelD geive NQO4_PARDE : 86- 93: pyldr LdyVapmN qehaw NQO4_PARDE : 116- 123: prras LirVlysE igril NQO4_PARDE : 131- 138: rilnh LmgVttgA mdvga NUCC_MAIZE : 28- 34: hgvlr Li-VtldG edvid NUCC_MAIZE : 64- 71: siiqy LpyVtrwD ylatm NUCC_MAIZE : 200- 207: qnpif LerVegvG fisge NUCC_MAIZE : 326- 332: lskqe Ly-VrveA pkgel NUCC_MARPO : 27- 33: hgvlr Li-VtldG edvld NUCC_MARPO : 63- 70: tivqy LpyVtrwD ylatm NUCC_MARPO : 199- 206: nnpif LkrVegiG tvtre NUCC_MARPO : 232- 239: gvqwd LrkVdhyE cydel NUCC_ORYSA : 28- 34: hgvlr Li-VtldG edvid NUCC_ORYSA : 64- 71: tiiqy LpyVtrwD ylatm NUCC_ORYSA : 200- 207: qnpif LerVegvG fisge NUCC_ORYSA : 233- 240: giqwd LrkVdlyE synqf NUCC_SECCE : 36- 43: tiiqy LpyVtrwD ylatm NUCC_SYNY3 : 28- 34: hgvlr Li-VtldG edvvd NUCC_SYNY3 : 184- 191: fcdyf LpkVdeyE klitn NUCC_SYNY3 : 234- 241: gvkwd LrkVdhyE cydel NUCC_SYNY3 : 370- 377: ilphi LkgVkvaD imail NUCC_TOBAC : 28- 34: hgvlr Li-VtldG edvvd NUCC_TOBAC : 64- 71: tiiqy LpyVtrwD ylatm NUCC_TOBAC : 200- 207: rnpif LerVegvG iiggd NUCC_TOBAC : 233- 240: giewd LrkVdhyE sydef NUCC_TOBAC : 326- 332: lskqe Ly-VrveA pkgel NUCM_BOVIN : 62- 69: aahgv LrlVmelS gemvr NUCM_NEUCR : 154- 161: pyfdr LdyVsmmT neqcf NUCM_NEUCR : 173- 180: lavek LlnVeipE rakwi NUCM_NEUCR : 174- 180: avekl Ln-VeipE rakwi NUCM_NEUCR : 199- 206: rilnh LmsVlshA mdvga NUCM_PARTE : 162- 168: vnlnf Ls-VkllT dilef NUCM_PARTE : 214- 221: cldfg LtgVmarS tgikr NUCM_SOLTU : 25- 32: aahgv LrlVlemN gxvv NUCM_TRYBB : 219- 226: lvfns LsgVlsrS lgmvw NUCM_TRYBB : 357- 364: flhic LldVclrG fllhd NUCM_TRYBB : 358- 364: lhicl Ld-VclrG fllhd NUOD_ECOLI : 96- 102: empyv La-VeklA gitvp NUOD_ECOLI : 391- 397: slvsd Li-VylgS idfvm NUOD_SALTY : 65- 71: slvsd Li-VylgS idfvm P 16: 8.3401 32( 15) G-x(2)-V Occurences: 32(15) HYCE_ECOLI : 261- 264: venam GiqV peraq HYCE_ECOLI : 391- 394: dfsnv GpmV rasgh HYCE_ECOLI : 424- 427: vhseq GcdV isrlk HYCE_ECOLI : 515- 518: rymlr GntV sdapl NQO4_PARDE : 50- 53: vleld GeiV eradp NQO4_PARDE : 237- 240: dwgyt GvmV rgsgl NQO4_PARDE : 337- 340: klyte GfkV pagev NUCC_MAIZE : 34- 37: ivtld GedV idcep NUCC_MARPO : 33- 36: ivtld GedV ldcep NUCC_MARPO : 161- 164: yfrig GvaV dlpyg NUCC_ORYSA : 34- 37: ivtld GedV idcep NUCC_SECCE : 6- 9: ivtld GedV idcep NUCC_SYNY3 : 34- 37: ivtld GedV vdcep NUCC_SYNY3 : 163- 166: yfrvg GvaV dlpyg NUCC_SYNY3 : 227- 230: gpmlr GsgV kwdlr NUCC_SYNY3 : 372- 375: philk GvkV adima NUCC_TOBAC : 34- 37: ivtld GedV vdcep NUCM_BOVIN : 15- 18: waeqy GgaV myptk NUCM_BOVIN : 70- 73: vmels GemV rkcdp NUCM_BOVIN : 355- 358: klyte GyqV ppgat NUCM_NEUCR : 289- 292: idrlr GigV vsaad NUCM_NEUCR : 310- 313: gvmlr GsgV pwdir NUCM_NEUCR : 403- 406: llytk GyaV ppgdt NUCM_NEUCR : 423- 426: pkgem GvyV vsdgs NUCM_PARTE : 27- 30: ilqln GevV ekmdi NUCM_SOLTU : 33- 36: vlemn GxvV NUCM_TRYBB : 282- 285: qcffv GffV fgfvc NUOD_ECOLI : 86- 89: rieyl GgcV nempy NUOD_ECOLI : 103- 106: vekla GitV pdrvn NUOD_ECOLI : 264- 267: feipv GggV sdcyt NUOD_ECOLI : 385- 388: paair GslV sdliv NUOD_SALTY : 59- 62: psair GslV sdliv Q 17: 8.3401 27( 15) Q-x-P Occurences: 27(15) HYCE_ECOLI : 157- 159: smdyr QrP apttd HYCE_ECOLI : 263- 265: namgi QvP eraqm NQO4_PARDE : 34- 36: infgp QhP aahgl NQO4_PARDE : 264- 266: defdf QiP vgrng NUCC_MAIZE : 18- 20: vnmgp QhP smhgv NUCC_MAIZE : 93- 95: fleni QiP krasy NUCC_MAIZE : 128- 130: adlga QtP ffyif NUCC_MAIZE : 195- 197: qelit QnP ifler NUCC_MARPO : 92- 94: kltni QvP krasy NUCC_MARPO : 127- 129: adiga QtP ffyif NUCC_ORYSA : 18- 20: vnmgp QhP smhgv NUCC_ORYSA : 93- 95: fleni QiP qrasy NUCC_ORYSA : 128- 130: adlga QtP ffyif NUCC_ORYSA : 195- 197: qqlit QnP ifler NUCC_SECCE : 65- 67: fleni QiP qrasy NUCC_SYNY3 : 128- 130: advga QtP ffyif NUCC_TOBAC : 18- 20: vnmgp QhP smhgv NUCC_TOBAC : 93- 95: qlgni QvP krasy NUCC_TOBAC : 128- 130: adiga QtP ffyif NUCM_BOVIN : 54- 56: lnfgp QhP aahgv NUCM_BOVIN : 357- 359: ytegy QvP pgaty NUCM_NEUCR : 102- 104: vnfgp QhP aahgv NUCM_PARTE : 11- 13: vnfgp QhP aahgv NUCM_SOLTU : 17- 19: lnfgp QhP aahgv NUCM_TRYBB : 18- 20: ftfgp QhP aahgv NUOD_ECOLI : 378- 380: fahlq QiP aairg NUOD_SALTY : 52- 54: fahlq QiP sairg R 18: 7.8401 69( 15) G-x(1,2)-V Occurences: 69(15) HYCE_ECOLI : 20- 22: neafp Gv-V ldhaw HYCE_ECOLI : 261- 264: venam GiqV peraq HYCE_ECOLI : 391- 394: dfsnv GpmV rasgh HYCE_ECOLI : 424- 427: vhseq GcdV isrlk HYCE_ECOLI : 515- 518: rymlr GntV sdapl NQO4_PARDE : 50- 53: vleld GeiV eradp NQO4_PARDE : 107- 109: ierlt Gt-V iprra NQO4_PARDE : 177- 179: ayfrp Gg-V hqdlp NQO4_PARDE : 223- 225: rlvdi Gi-V teada NQO4_PARDE : 237- 240: dwgyt GvmV rgsgl NQO4_PARDE : 304- 306: raepa Gd-V largk NQO4_PARDE : 337- 340: klyte GfkV pagev NQO4_PARDE : 343- 345: fkvpa Ge-V yaave NQO4_PARDE : 408- 410: ldivf Ge-V dr NUCC_MAIZE : 34- 37: ivtld GedV idcep NUCC_MAIZE : 161- 163: nyfri Gg-V aadlp NUCC_MAIZE : 185- 187: dyflq Gv-V eyqel NUCC_MAIZE : 389- 391: idiim Ge-V dr NUCC_MARPO : 33- 36: ivtld GedV ldcep NUCC_MARPO : 160- 162: nyfri Gg-V avdlp NUCC_MARPO : 161- 164: yfrig GvaV dlpyg NUCC_MARPO : 206- 208: rvegi Gt-V treea NUCC_MARPO : 388- 390: idiim Ge-V dr NUCC_ORYSA : 34- 37: ivtld GedV idcep NUCC_ORYSA : 161- 163: nyfri Gg-V aadlp NUCC_ORYSA : 389- 391: idiim Ge-V dr NUCC_SECCE : 6- 9: ivtld GedV idcep NUCC_SYNY3 : 34- 37: ivtld GedV vdcep NUCC_SYNY3 : 162- 164: nyfrv Gg-V avdlp NUCC_SYNY3 : 163- 166: yfrvg GvaV dlpyg NUCC_SYNY3 : 208- 210: rvegv Gt-V treea NUCC_SYNY3 : 227- 230: gpmlr GsgV kwdlr NUCC_SYNY3 : 372- 375: philk GvkV adima NUCC_SYNY3 : 390- 392: idiim Gs-V dr NUCC_TOBAC : 34- 37: ivtld GedV vdcep NUCC_TOBAC : 161- 163: nyfri Gg-V aadlp NUCC_TOBAC : 389- 391: idiim Ge-V dr NUCM_BOVIN : 15- 18: waeqy GgaV myptk NUCM_BOVIN : 16- 18: aeqyg Ga-V myptk NUCM_BOVIN : 70- 73: vmels GemV rkcdp NUCM_BOVIN : 197- 199: ayvrp Gg-V hqdlp NUCM_BOVIN : 243- 245: rtvdi Gi-V taeda NUCM_BOVIN : 355- 358: klyte GyqV ppgat NUCM_BOVIN : 426- 428: qdivf Ge-V dr NUCM_NEUCR : 245- 247: ayvrp Gg-V hqdip NUCM_NEUCR : 289- 292: idrlr GigV vsaad NUCM_NEUCR : 291- 293: rlrgi Gv-V saada NUCM_NEUCR : 310- 313: gvmlr GsgV pwdir NUCM_NEUCR : 369- 371: nkmpa Gp-V rvedy NUCM_NEUCR : 403- 406: llytk GyaV ppgdt NUCM_NEUCR : 423- 426: pkgem GvyV vsdgs NUCM_NEUCR : 474- 476: mdlvf Ge-V dr NUCM_PARTE : 27- 29: ilqln Ge-V vekmd NUCM_PARTE : 27- 30: ilqln GevV ekmdi NUCM_SOLTU : 33- 35: vlemn Gx-V v NUCM_SOLTU : 33- 36: vlemn GxvV NUCM_TRYBB : 170- 172: ddfvf Gf-V dflll NUCM_TRYBB : 228- 230: lsrsl Gm-V wdcrl NUCM_TRYBB : 282- 285: qcffv GffV fgfvc NUCM_TRYBB : 287- 289: gffvf Gf-V clfdy NUCM_TRYBB : 382- 384: idvvf Gs-V dr NUOD_ECOLI : 86- 89: rieyl GgcV nempy NUOD_ECOLI : 87- 89: ieylg Gc-V nempy NUOD_ECOLI : 103- 106: vekla GitV pdrvn NUOD_ECOLI : 173- 175: awfri Gg-V ahdlp NUOD_ECOLI : 264- 267: feipv GggV sdcyt NUOD_ECOLI : 265- 267: eipvg Gg-V sdcyt NUOD_ECOLI : 332- 334: lqvsw Gp-V mpane NUOD_ECOLI : 385- 388: paair GslV sdliv NUOD_SALTY : 6- 8: lqvsw Gp-V mpaqe NUOD_SALTY : 59- 62: psair GslV sdliv S 19: 7.8401 61( 15) E-x(2,3)-G Occurences: 61(15) HYCE_ECOLI : 3- 7: ms EeklG qhyla HYCE_ECOLI : 4- 7: mse Ekl-G qhyla HYCE_ECOLI : 16- 20: laaln EafpG vvldh HYCE_ECOLI : 225- 229: mekla EtrmG ynevt HYCE_ECOLI : 257- 261: yttsv EnamG iqvpe HYCE_ECOLI : 316- 320: smkma EiltG arkty HYCE_ECOLI : 475- 479: algfa EaprG ddihw NQO4_PARDE : 47- 50: lrmvl Eld-G eiver NQO4_PARDE : 103- 107: wclai ErltG tvipr NQO4_PARDE : 162- 166: lmify EracG arlha NQO4_PARDE : 301- 304: qklra Epa-G dvlar NQO4_PARDE : 350- 354: vyaav EgpkG efgvy NUCC_MAIZE : 41- 45: dvidc EpilG ylhrg NUCC_MAIZE : 146- 150: iydlf EavtG mrmmh NUCC_MAIZE : 201- 205: npifl ErveG vgfis NUCC_MAIZE : 204- 207: flerv Egv-G fisge NUCC_MAIZE : 280- 284: iqqav EkipG gpyen NUCC_MAIZE : 331- 335: lyvrv EapkG elgiy NUCC_MARPO : 40- 44: dvldc EpvlG ylhrg NUCC_MARPO : 145- 149: iydlf EsatG mrmmh NUCC_MARPO : 203- 206: flkrv Egi-G tvtre NUCC_MARPO : 330- 334: hyvrv EapkG elgif NUCC_ORYSA : 41- 45: dvidc EpilG ylhrg NUCC_ORYSA : 146- 150: iydlf EaatG mrmmh NUCC_ORYSA : 201- 205: npifl ErveG vgfis NUCC_ORYSA : 204- 207: flerv Egv-G fisge NUCC_ORYSA : 280- 284: iqqav EkipG gpyen NUCC_ORYSA : 331- 335: lyarv EapkG elgiy NUCC_SECCE : 13- 17: dvidc EpilG ylhrg NUCC_SYNY3 : 41- 45: dvvdc EpviG ylhrg NUCC_SYNY3 : 146- 150: iydlw EaasG mrlin NUCC_SYNY3 : 205- 208: frrrv Egv-G tvtre NUCC_SYNY3 : 253- 256: wevqy Eta-G dcfar NUCC_SYNY3 : 332- 336: hyvrl EsgkG elgif NUCC_TOBAC : 41- 45: dvvdc EpilG ylhrg NUCC_TOBAC : 87- 90: tingp Eql-G niqvp NUCC_TOBAC : 146- 150: iydlf EaatG mrmmh NUCC_TOBAC : 201- 205: npifl ErveG vgiig NUCC_TOBAC : 204- 207: flerv Egv-G iiggd NUCC_TOBAC : 280- 284: iqqal EgipG gpyen NUCC_TOBAC : 331- 335: lyvrv EapkG elgif NUCM_BOVIN : 12- 15: dvewa Eqy-G gavmy NUCM_BOVIN : 12- 16: dvewa EqygG avmyp NUCM_BOVIN : 67- 70: lrlvm Els-G emvrk NUCM_BOVIN : 182- 186: mfefy ErvsG armha NUCM_BOVIN : 368- 372: tytai EapkG efgvy NUCM_NEUCR : 48- 51: aepsy Egq-G trlvp NUCM_NEUCR : 115- 118: lrlil Elk-G eeivr NUCM_NEUCR : 230- 234: lmefy ErvsG arlha NUCM_NEUCR : 416- 420: tysai EgpkG emgvy NUCM_PARTE : 140- 144: imefy ErvcG rrmha NUCM_PARTE : 338- 342: tyqav EspkG efgvt NUCM_SOLTU : 30- 33: lrlvl Emn-G xvv NUCM_TRYBB : 325- 329: sfacv EhpkG eycll NUOD_ECOLI : 9- 12: ltfkp Eew-G mkrgt NUOD_ECOLI : 64- 67: hhrga Ekm-G erqsw NUOD_ECOLI : 83- 86: ytdri Eyl-G gcvne NUOD_ECOLI : 83- 87: ytdri EylgG cvnem NUOD_ECOLI : 99- 103: yvlav EklaG itvpd NUOD_ECOLI : 158- 162: iydlv EaitG frmhp NUOD_ECOLI : 260- 264: enfdf EipvG ggvsd NUOD_ECOLI : 345- 349: sfqmi EatkG insyy NUOD_SALTY : 19- 23: sfqmv EatkG insyy T 20: 7.8401 65( 15) R-x(2,3)-L Occurences: 65(15) HYCE_ECOLI : 133- 137: glpde RrlvL pddwp HYCE_ECOLI : 134- 137: lpder Rlv-L pddwp HYCE_ECOLI : 272- 275: raqmi Rai-L lever HYCE_ECOLI : 272- 276: raqmi RailL everl HYCE_ECOLI : 334- 337: liggi Rrd-L lkddm HYCE_ECOLI : 334- 338: liggi RrdlL kddmi HYCE_ECOLI : 335- 338: iggir Rdl-L kddmi HYCE_ECOLI : 468- 471: tyiph Rfa-L gfaea HYCE_ECOLI : 510- 513: nwptl Rym-L rgntv NQO4_PARDE : 6- 10: mdgdi RknsL ddgsm NQO4_PARDE : 43- 46: ahgll Rmv-L eldge NQO4_PARDE : 74- 77: klmes Rty-L qnlpy NQO4_PARDE : 112- 116: gtvip RrasL irvly NQO4_PARDE : 113- 116: tvipr Ras-L irvly NQO4_PARDE : 154- 157: wgfea Ree-L mifye NQO4_PARDE : 197- 201: eewce RfpkL vddld NQO4_PARDE : 241- 245: tgvmv RgsgL awdlr NQO4_PARDE : 309- 312: gdvla Rgk-L tpprr NQO4_PARDE : 370- 373: tnkpw Rak-L rapgf NQO4_PARDE : 389- 393: idwms RghmL advpa NUCC_MAIZE : 7- 10: slslk Rkd-L mivnm NUCC_MAIZE : 69- 73: lpyvt RwdyL atmft NUCC_MAIZE : 102- 106: rasyi RvimL elsri NUCC_MAIZE : 136- 140: ffyif RereL iydlf NUCC_MARPO : 68- 72: lpyvt RwdyL atmft NUCC_MARPO : 101- 105: rasyi RiimL elsri NUCC_ORYSA : 7- 10: slplt Rkd-L mivnm NUCC_ORYSA : 69- 73: lpyvt RwdyL atmft NUCC_ORYSA : 102- 106: rasyi RvimL elsri NUCC_ORYSA : 136- 140: ffyif RereL iydlf NUCC_ORYSA : 234- 238: iqwdl RkvdL yesyn NUCC_SECCE : 41- 45: lpyvt RwdyL atmft NUCC_SECCE : 74- 78: rasyi RvimL elsri NUCC_SYNY3 : 102- 106: raqyi RvimL elnri NUCC_SYNY3 : 277- 280: svkii Rqa-L kampg NUCC_TOBAC : 7- 10: taptt Rkd-L mivnm NUCC_TOBAC : 69- 73: lpyvt RwdyL atmft NUCC_TOBAC : 102- 106: rasyi RvimL elsri NUCC_TOBAC : 136- 140: ffyif RereL iydlf NUCC_TOBAC : 294- 298: nleir RfdrL kdpew NUCC_TOBAC : 371- 374: pqlvk Rmk-L adimt NUCM_BOVIN : 221- 225: knfsl RideL eemlt NUCM_NEUCR : 111- 114: ahgvl Rli-L elkge NUCM_NEUCR : 142- 145: klcey Rty-L qalpy NUCM_NEUCR : 222- 225: wgfee Rek-L mefye NUCM_NEUCR : 353- 356: rmeef Rqs-L riihq NUCM_NEUCR : 455- 459: fdhls RghmL adava NUCM_PARTE : 20- 23: ahgvl Rli-L qlnge NUCM_SOLTU : 26- 29: ahgvl Rlv-L emngx NUCM_TRYBB : 91- 94: feyml Rcc-L slrca NUCM_TRYBB : 138- 141: wsfee Rdk-L mtffd NUCM_TRYBB : 152- 155: lccgc Rmh-L afmvl NUCM_TRYBB : 197- 201: lfvgn RlfyL rlrgl NUCM_TRYBB : 202- 206: rlfyl RlrgL sffdl NUCM_TRYBB : 260- 263: gdafd Rlf-L rlfdm NUCM_TRYBB : 269- 272: rlfdm Rms-L lickq NUCM_TRYBB : 269- 273: rlfdm RmslL ickqc NUCM_TRYBB : 344- 347: vglcs Rlr-L rcadf NUCM_TRYBB : 363- 366: ldvcl Rgf-L lhdlv NUCM_TRYBB : 363- 367: ldvcl RgflL hdlva NUOD_ECOLI : 39- 42: ahgaf Riv-L qldge NUOD_ECOLI : 81- 85: ipytd RieyL ggcvn NUOD_ECOLI : 114- 117: rvnvi Rvm-L selfr NUOD_ECOLI : 188- 191: wdrll Ref-L dwmpk NUOD_ECOLI : 223- 227: vapma RkeaL ewgtt NUOD_ECOLI : 273- 276: sdcyt Rvm-L kveel NUOD_ECOLI : 282- 285: kveel Rqs-L rileq NUOD_ECOLI : 384- 387: ipaai Rgs-L vsdli NUOD_SALTY : 58- 61: ipsai Rgs-L vsdli Number of patterns evaluated by Pratt:100 Total running time: 1 seconds