------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file COMPLEX1_24K PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename COMPLEX1_24K.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NQO2_PARDE 239 NUHM_BOVIN 249 NUHM_HUMAN 249 NUHM_NEUCR 263 NUHM_RAT 241 NUOE_ECOLI 166 NUOE_SALTY 166 Pratt run started at Thu Feb 6 19:08:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 32.3604 7( 7) A-x(2)-L-x(2)-P-x(4,5)-E-x(0,1)-V-A-x-F-Y 2: 28.1904 7( 7) C-L-G-x-C-x(3)-P-x(0,1)-M-x(1,2)-I 3: 28.1904 9( 7) C-x(0,1)-L-G-x-C-x(3)-P-x(3)-I-x(1,2)-D 4: 28.1904 7( 7) L-x(2)-P-x(4,5)-E-x(0,1)-V-A-x-F-Y 5: 24.5203 7( 7) L-G-x-C-x(3)-P-x(3)-I-x(1,2)-D 6: 24.0203 7( 7) L-G-x-C-x(3)-P-x(0,1)-M-x(1,2)-I 7: 24.0203 9( 7) C-x(0,1)-L-G-x-C-x(3)-P-x(0,1)-M 8: 24.0203 9( 7) C-x(1,2)-G-x-C-x(3)-P-x(3)-I-x(1,2)-D 9: 24.0203 11( 7) P-x(4,5)-E-x(0,1)-V-A-x-F-Y 10: 23.5203 7( 7) P-V-G-x(1,3)-H-x(3,4)-C-x(4)-C 11: 20.8503 7( 7) A-x(4)-L-x(3)-Q-x-Q-x-G 12: 20.3503 7( 7) G-x-C-x(3)-P-x(3)-I-x(1,2)-D 13: 20.3503 7( 7) E-x(0,1)-V-A-x-F-Y 14: 19.8503 7( 7) G-x-C-x(3)-P-x(0,1)-M-x(1,2)-I 15: 19.8503 7( 7) G-x(0,1)-C-x(3)-P-x(3)-I-x(1,2)-D 16: 19.3503 7( 7) V-G-x(1,3)-H-x(3,4)-C-x(4)-C 17: 19.3503 7( 7) V-x(2,4)-A-x(3,4)-A-x(4)-I-x(5)-E 18: 16.6802 7( 7) V-A-x-F-Y 19: 16.6802 7( 7) L-x(3)-Q-x-Q-x-G 20: 16.1802 7( 7) C-x(3)-P-x(3)-I-x(1,2)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 103.1652 7( 7) A-x-[ILM]-[EP]-[ALV]-L-x(2)-[AGV]-Q-[EKR]-Q-x-G-[FW]-x-[PS]-x-[GPS]-[AV]-[IM]-x(3)-A-[DER]-[ILV]-L-[EGQ]-[IMV]-P-x(2)-[DR]-[AV]-x-[EG]-V-A-[ST]-F-Y B 2: 90.3387 7( 7) L-x(2)-[AGV]-Q-[EKR]-Q-x-G-[FW]-x-[PS]-x-[GPS]-[AV]-[IM]-x(3)-A-[DER]-[ILV]-L-[EGQ]-[IMV]-P-x(2)-[DR]-[AV]-x-[EG]-V-A-[ST]-F-Y C 3: 82.4132 7( 7) C-L-G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(1,2)-I-[DGN]-[DEK]-[DN]-x-[FHY]-[AES]-[DH]-L-T-[APV]-[EK]-x-[IL]-x-[AEQ]-[ILV]-[IL]-[DES] D 4: 78.2431 7( 7) L-G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(1,2)-I-[DGN]-[DEK]-[DN]-x-[FHY]-[AES]-[DH]-L-T-[APV]-[EK]-x-[IL]-x-[AEQ]-[ILV]-[IL]-[DES] E 5: 74.0731 7( 7) G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(1,2)-I-[DGN]-[DEK]-[DN]-x-[FHY]-[AES]-[DH]-L-T-[APV]-[EK]-x-[IL]-x-[AEQ]-[ILV]-[IL]-[DES] F 6: 58.0830 9( 7) C-x(0,1)-L-G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(3)-[EGN]-[DK]-[DNT]-[FHY]-x-[EH]-x(2)-[PT]-x(3)-[ILP]-x(2)-[ILV]-x-[DRS] G 7: 53.1687 9( 7) C-x(0,1)-L-G-[AN]-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] H 8: 49.4986 7( 7) L-G-[AN]-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] I 9: 48.9986 9( 7) C-x(1,2)-G-[AN]-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] J 10: 48.9979 7( 7) V-x(2,4)-A-x(3,4)-A-[DP]-[MV]-[ALV]-[GQ]-I-[GNP]-x-[DNS]-x(2)-E-[DG]-[LV]-[AT]-[APTV] K 11: 48.5471 7( 7) P-V-G-x(1,3)-H-x(3,4)-C-[DGT]-[ST]-[TV]-[PTV]-C-x-[IL]-x-[DGN]-x-[DEGQ]-[DGS]-x(3)-[ATV] L 12: 46.2618 7( 7) A-[DER]-[ILV]-L-[EGQ]-[IMV]-P-x(4,5)-E-x(0,1)-V-A-[ST]-F-Y M 13: 44.3771 7( 7) V-G-x(1,3)-H-x(3,4)-C-[DGT]-[ST]-[TV]-[PTV]-C-x-[IL]-x-[DGN]-x-[DEGQ]-[DGS]-x(3)-[ATV] N 14: 42.0596 7( 7) G-x-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] O 15: 41.5596 7( 7) G-x(0,1)-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] P 16: 36.8403 7( 7) L-[EGQ]-[IMV]-P-x(4,5)-E-x(0,1)-V-A-[ST]-F-Y Q 17: 32.5128 7( 7) C-x(3)-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] R 18: 27.1957 11( 7) P-x(4,5)-E-x(0,1)-V-A-[ST]-F-Y S 19: 23.5257 7( 7) E-x(0,1)-V-A-[ST]-F-Y T 20: 19.8556 7( 7) V-A-[ST]-F-Y Best patterns with alignements: fitness hits(seqs) Pattern A 1: 103.1652 7( 7) A-x-[ILM]-[EP]-[ALV]-L-x(2)-[AGV]-Q-[EKR]-Q-x-G-[FW]-x-[PS]-x-[GPS]-[AV]-[IM]-x(3)-A-[DER]-[ILV]-L-[EGQ]-[IMV]-P-x(2)-[DR]-[AV]-x-[EG]-V-A-[ST]-F-Y Occurences: 7(7) NQO2_PARDE : 38- 79: grqqs AiIPVLwrAQEQeGWlSrPAIeycADLLGMPyiRAlEVATFY fmfql NUHM_BOVIN : 78- 119: ghkaa AvLPVLdlAQRQnGWlPiSAMnkvAEILQVPpmRVyEVATFY tmynr NUHM_HUMAN : 78- 119: ghkaa AvLPVLdlAQRQnGWlPiSAMnkvAEVLQVPpmRVyEVATFY tmynr NUHM_NEUCR : 86- 127: qykka AvMPLLdlGQRQhGFcSiSVMnevARLLEMPpmRVyEVASFY tmynr NUHM_RAT : 70- 111: ghraa AvLPVLdlAQRQnGWlPiSAMnkvAEVLQVPpmRVyEVATFY tmynr NUOE_ECOLI : 35- 76: edpra AsIEALkiVQKQrGWvPdGAIhaiADVLGIPasDVeGVATFY sqifr NUOE_SALTY : 35- 76: edpra AsIEALkiVQKQrGWvPdGAIyaiADVLGIPasDVeGVATFY sqifr B 2: 90.3387 7( 7) L-x(2)-[AGV]-Q-[EKR]-Q-x-G-[FW]-x-[PS]-x-[GPS]-[AV]-[IM]-x(3)-A-[DER]-[ILV]-L-[EGQ]-[IMV]-P-x(2)-[DR]-[AV]-x-[EG]-V-A-[ST]-F-Y Occurences: 7(7) NQO2_PARDE : 43- 79: aiipv LwrAQEQeGWlSrPAIeycADLLGMPyiRAlEVATFY fmfql NUHM_BOVIN : 83- 119: avlpv LdlAQRQnGWlPiSAMnkvAEILQVPpmRVyEVATFY tmynr NUHM_HUMAN : 83- 119: avlpv LdlAQRQnGWlPiSAMnkvAEVLQVPpmRVyEVATFY tmynr NUHM_NEUCR : 91- 127: avmpl LdlGQRQhGFcSiSVMnevARLLEMPpmRVyEVASFY tmynr NUHM_RAT : 75- 111: avlpv LdlAQRQnGWlPiSAMnkvAEVLQVPpmRVyEVATFY tmynr NUOE_ECOLI : 40- 76: asiea LkiVQKQrGWvPdGAIhaiADVLGIPasDVeGVATFY sqifr NUOE_SALTY : 40- 76: asiea LkiVQKQrGWvPdGAIyaiADVLGIPasDVeGVATFY sqifr C 3: 82.4132 7( 7) C-L-G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(1,2)-I-[DGN]-[DEK]-[DN]-x-[FHY]-[AES]-[DH]-L-T-[APV]-[EK]-x-[IL]-x-[AEQ]-[ILV]-[IL]-[DES] Occurences: 7(7) NQO2_PARDE : 137- 167: weeve CLGACTnAP-MaqIGKDfYEDLTVEkLaALID rfaag NUHM_BOVIN : 176- 206: lieve CLGACVnAP-MvqINDNyYEDLTPKdIeEIID elkag NUHM_HUMAN : 176- 206: lieve CLGACVnAP-MvqINDNyYEDLTAKdIeEIID elkag NUHM_NEUCR : 186- 216: fieve CLGACAnAP-MvqINDDyFEDLTPEtIkQVLS alkes NUHM_RAT : 168- 198: lieve CLGACVnAP-MvqINDDyYEDLTPKdIeEIID elrag NUOE_ECOLI : 133- 163: llptc CLGNCDkGPnMm-IDEDtHAHLTPEaIpELLE ryk NUOE_SALTY : 133- 163: llptc CLGNCDkGPnMm-IDEDtHSHLTPEaIpELLE ryk D 4: 78.2431 7( 7) L-G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(1,2)-I-[DGN]-[DEK]-[DN]-x-[FHY]-[AES]-[DH]-L-T-[APV]-[EK]-x-[IL]-x-[AEQ]-[ILV]-[IL]-[DES] Occurences: 7(7) NQO2_PARDE : 138- 167: eevec LGACTnAP-MaqIGKDfYEDLTVEkLaALID rfaag NUHM_BOVIN : 177- 206: ievec LGACVnAP-MvqINDNyYEDLTPKdIeEIID elkag NUHM_HUMAN : 177- 206: ievec LGACVnAP-MvqINDNyYEDLTAKdIeEIID elkag NUHM_NEUCR : 187- 216: ievec LGACAnAP-MvqINDDyFEDLTPEtIkQVLS alkes NUHM_RAT : 169- 198: ievec LGACVnAP-MvqINDDyYEDLTPKdIeEIID elrag NUOE_ECOLI : 134- 163: lptcc LGNCDkGPnMm-IDEDtHAHLTPEaIpELLE ryk NUOE_SALTY : 134- 163: lptcc LGNCDkGPnMm-IDEDtHSHLTPEaIpELLE ryk E 5: 74.0731 7( 7) G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(1,2)-I-[DGN]-[DEK]-[DN]-x-[FHY]-[AES]-[DH]-L-T-[APV]-[EK]-x-[IL]-x-[AEQ]-[ILV]-[IL]-[DES] Occurences: 7(7) NQO2_PARDE : 139- 167: evecl GACTnAP-MaqIGKDfYEDLTVEkLaALID rfaag NUHM_BOVIN : 178- 206: evecl GACVnAP-MvqINDNyYEDLTPKdIeEIID elkag NUHM_HUMAN : 178- 206: evecl GACVnAP-MvqINDNyYEDLTAKdIeEIID elkag NUHM_NEUCR : 188- 216: evecl GACAnAP-MvqINDDyFEDLTPEtIkQVLS alkes NUHM_RAT : 170- 198: evecl GACVnAP-MvqINDDyYEDLTPKdIeEIID elrag NUOE_ECOLI : 135- 163: ptccl GNCDkGPnMm-IDEDtHAHLTPEaIpELLE ryk NUOE_SALTY : 135- 163: ptccl GNCDkGPnMm-IDEDtHSHLTPEaIpELLE ryk F 6: 58.0830 9( 7) C-x(0,1)-L-G-[AN]-C-[ADTV]-x-[AG]-P-x(0,1)-M-x(3)-[EGN]-[DK]-[DNT]-[FHY]-x-[EH]-x(2)-[PT]-x(3)-[ILP]-x(2)-[ILV]-x-[DRS] Occurences: 9(7) NQO2_PARDE : 137- 167: weeve C-LGACTnAP-MaqiGKDFyEdlTvekLaaLiD rfaag NUHM_BOVIN : 176- 206: lieve C-LGACVnAP-MvqiNDNYyEdlTpkdIeeIiD elkag NUHM_HUMAN : 176- 206: lieve C-LGACVnAP-MvqiNDNYyEdlTakdIeeIiD elkag NUHM_NEUCR : 186- 216: fieve C-LGACAnAP-MvqiNDDYfEdlTpetIkqVlS alkes NUHM_RAT : 168- 198: lieve C-LGACVnAP-MvqiNDDYyEdlTpkdIeeIiD elrag NUOE_ECOLI : 132- 164: tllpt CcLGNCDkGPnMmidEDTHaHltPeaiPelLeR yk NUOE_ECOLI : 133- 164: llptc C-LGNCDkGPnMmidEDTHaHltPeaiPelLeR yk NUOE_SALTY : 132- 164: tllpt CcLGNCDkGPnMmidEDTHsHltPeaiPelLeR yk NUOE_SALTY : 133- 164: llptc C-LGNCDkGPnMmidEDTHsHltPeaiPelLeR yk G 7: 53.1687 9( 7) C-x(0,1)-L-G-[AN]-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] Occurences: 9(7) NQO2_PARDE : 137- 168: weeve C-LGACTnAPmaqIgkDfYeDltVeklAalIdR faage NUHM_BOVIN : 176- 206: lieve C-LGACVnAPmvqIn-DnYyEdlTpkdIeeIiD elkag NUHM_HUMAN : 176- 206: lieve C-LGACVnAPmvqIn-DnYyEdlTakdIeeIiD elkag NUHM_NEUCR : 186- 216: fieve C-LGACAnAPmvqIn-DdYfEdlTpetIkqVlS alkes NUHM_RAT : 168- 198: lieve C-LGACVnAPmvqIn-DdYyEdlTpkdIeeIiD elrag NUOE_ECOLI : 132- 164: tllpt CcLGNCDkGPnmmIdeDtHaHltPeaiPelLeR yk NUOE_ECOLI : 133- 164: llptc C-LGNCDkGPnmmIdeDtHaHltPeaiPelLeR yk NUOE_SALTY : 132- 164: tllpt CcLGNCDkGPnmmIdeDtHsHltPeaiPelLeR yk NUOE_SALTY : 133- 164: llptc C-LGNCDkGPnmmIdeDtHsHltPeaiPelLeR yk H 8: 49.4986 7( 7) L-G-[AN]-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] Occurences: 7(7) NQO2_PARDE : 138- 168: eevec LGACTnAPmaqIgkDfYeDltVeklAalIdR faage NUHM_BOVIN : 177- 206: ievec LGACVnAPmvqIn-DnYyEdlTpkdIeeIiD elkag NUHM_HUMAN : 177- 206: ievec LGACVnAPmvqIn-DnYyEdlTakdIeeIiD elkag NUHM_NEUCR : 187- 216: ievec LGACAnAPmvqIn-DdYfEdlTpetIkqVlS alkes NUHM_RAT : 169- 198: ievec LGACVnAPmvqIn-DdYyEdlTpkdIeeIiD elrag NUOE_ECOLI : 134- 164: lptcc LGNCDkGPnmmIdeDtHaHltPeaiPelLeR yk NUOE_SALTY : 134- 164: lptcc LGNCDkGPnmmIdeDtHsHltPeaiPelLeR yk I 9: 48.9986 9( 7) C-x(1,2)-G-[AN]-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] Occurences: 9(7) NQO2_PARDE : 137- 168: weeve Cl-GACTnAPmaqIgkDfYeDltVeklAalIdR faage NUHM_BOVIN : 176- 206: lieve Cl-GACVnAPmvqIn-DnYyEdlTpkdIeeIiD elkag NUHM_HUMAN : 176- 206: lieve Cl-GACVnAPmvqIn-DnYyEdlTakdIeeIiD elkag NUHM_NEUCR : 186- 216: fieve Cl-GACAnAPmvqIn-DdYfEdlTpetIkqVlS alkes NUHM_RAT : 168- 198: lieve Cl-GACVnAPmvqIn-DdYyEdlTpkdIeeIiD elrag NUOE_ECOLI : 132- 164: tllpt CclGNCDkGPnmmIdeDtHaHltPeaiPelLeR yk NUOE_ECOLI : 133- 164: llptc Cl-GNCDkGPnmmIdeDtHaHltPeaiPelLeR yk NUOE_SALTY : 132- 164: tllpt CclGNCDkGPnmmIdeDtHsHltPeaiPelLeR yk NUOE_SALTY : 133- 164: llptc Cl-GNCDkGPnmmIdeDtHsHltPeaiPelLeR yk J 10: 48.9979 7( 7) V-x(2,4)-A-x(3,4)-A-[DP]-[MV]-[ALV]-[GQ]-I-[GNP]-x-[DNS]-x(2)-E-[DG]-[LV]-[AT]-[APTV] Occurences: 7(7) NQO2_PARDE : 135- 159: fswee VeclgActn-APMAQIGkDfyEDLTV eklaa NUHM_BOVIN : 174- 198: ftlie VeclgAcvn-APMVQINdNyyEDLTP kdiee NUHM_HUMAN : 174- 198: ftlie VeclgAcvn-APMVQINdNyyEDLTA kdiee NUHM_NEUCR : 184- 208: ftfie VeclgAcan-APMVQINdDyfEDLTP etikq NUHM_RAT : 166- 190: ftlie VeclgAcvn-APMVQINdDyyEDLTP kdiee NUOE_ECOLI : 50- 74: kqrgw Vpdg-AihaiADVLGIPaSdvEGVAT fysqi NUOE_SALTY : 50- 74: kqrgw Vpdg-AiyaiADVLGIPaSdvEGVAT fysqi K 11: 48.5471 7( 7) P-V-G-x(1,3)-H-x(3,4)-C-[DGT]-[ST]-[TV]-[PTV]-C-x-[IL]-x-[DGN]-x-[DEGQ]-[DGS]-x(3)-[ATV] Occurences: 7(7) NQO2_PARDE : 86- 112: mfqlq PVGsvaHiqi-CGTTTCmIcGaEDlirV ckeki NUHM_BOVIN : 126- 151: mynrk PVGky-Hiqv-CTTTPCmLrNsDSileA iqkkl NUHM_HUMAN : 126- 151: mynrk PVGky-Hiqv-CTTTPCmLrNsDSileA iqkkl NUHM_NEUCR : 134- 159: mynrt PVGkf-Hvqa-CTTTPCqLgGcGSdviV kaike NUHM_RAT : 118- 143: mynrk PVGky-Hiqv-CTTTPCmLrDsDSileT lqrkl NUOE_ECOLI : 83- 108: qifrq PVGr--HviryCDSVVChInGyQGiqaA lekkl NUOE_SALTY : 83- 108: qifrq PVGr--HviryCDSVVChItGyQGiqaA leknl L 12: 46.2618 7( 7) A-[DER]-[ILV]-L-[EGQ]-[IMV]-P-x(4,5)-E-x(0,1)-V-A-[ST]-F-Y Occurences: 7(7) NQO2_PARDE : 62- 79: aieyc ADLLGMPyiralE-VATFY fmfql NUHM_BOVIN : 102- 119: amnkv AEILQVPpmrvyE-VATFY tmynr NUHM_HUMAN : 102- 119: amnkv AEVLQVPpmrvyE-VATFY tmynr NUHM_NEUCR : 110- 127: vmnev ARLLEMPpmrvyE-VASFY tmynr NUHM_RAT : 94- 111: amnkv AEVLQVPpmrvyE-VATFY tmynr NUOE_ECOLI : 59- 76: aihai ADVLGIPasdv-EgVATFY sqifr NUOE_SALTY : 59- 76: aiyai ADVLGIPasdv-EgVATFY sqifr M 13: 44.3771 7( 7) V-G-x(1,3)-H-x(3,4)-C-[DGT]-[ST]-[TV]-[PTV]-C-x-[IL]-x-[DGN]-x-[DEGQ]-[DGS]-x(3)-[ATV] Occurences: 7(7) NQO2_PARDE : 87- 112: fqlqp VGsvaHiqi-CGTTTCmIcGaEDlirV ckeki NUHM_BOVIN : 127- 151: ynrkp VGky-Hiqv-CTTTPCmLrNsDSileA iqkkl NUHM_HUMAN : 127- 151: ynrkp VGky-Hiqv-CTTTPCmLrNsDSileA iqkkl NUHM_NEUCR : 135- 159: ynrtp VGkf-Hvqa-CTTTPCqLgGcGSdviV kaike NUHM_RAT : 119- 143: ynrkp VGky-Hiqv-CTTTPCmLrDsDSileT lqrkl NUOE_ECOLI : 84- 108: ifrqp VGr--HviryCDSVVChInGyQGiqaA lekkl NUOE_SALTY : 84- 108: ifrqp VGr--HviryCDSVVChItGyQGiqaA leknl N 14: 42.0596 7( 7) G-x-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] Occurences: 7(7) NQO2_PARDE : 139- 168: evecl GaCTnAPmaqIgkDfYeDltVeklAalIdR faage NUHM_BOVIN : 178- 206: evecl GaCVnAPmvqIn-DnYyEdlTpkdIeeIiD elkag NUHM_HUMAN : 178- 206: evecl GaCVnAPmvqIn-DnYyEdlTakdIeeIiD elkag NUHM_NEUCR : 188- 216: evecl GaCAnAPmvqIn-DdYfEdlTpetIkqVlS alkes NUHM_RAT : 170- 198: evecl GaCVnAPmvqIn-DdYyEdlTpkdIeeIiD elrag NUOE_ECOLI : 135- 164: ptccl GnCDkGPnmmIdeDtHaHltPeaiPelLeR yk NUOE_SALTY : 135- 164: ptccl GnCDkGPnmmIdeDtHsHltPeaiPelLeR yk O 15: 41.5596 7( 7) G-x(0,1)-C-[ADTV]-x-[AG]-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] Occurences: 7(7) NQO2_PARDE : 139- 168: evecl GaCTnAPmaqIgkDfYeDltVeklAalIdR faage NUHM_BOVIN : 178- 206: evecl GaCVnAPmvqIn-DnYyEdlTpkdIeeIiD elkag NUHM_HUMAN : 178- 206: evecl GaCVnAPmvqIn-DnYyEdlTakdIeeIiD elkag NUHM_NEUCR : 188- 216: evecl GaCAnAPmvqIn-DdYfEdlTpetIkqVlS alkes NUHM_RAT : 170- 198: evecl GaCVnAPmvqIn-DdYyEdlTpkdIeeIiD elrag NUOE_ECOLI : 135- 164: ptccl GnCDkGPnmmIdeDtHaHltPeaiPelLeR yk NUOE_SALTY : 135- 164: ptccl GnCDkGPnmmIdeDtHsHltPeaiPelLeR yk P 16: 36.8403 7( 7) L-[EGQ]-[IMV]-P-x(4,5)-E-x(0,1)-V-A-[ST]-F-Y Occurences: 7(7) NQO2_PARDE : 65- 79: ycadl LGMPyiralE-VATFY fmfql NUHM_BOVIN : 105- 119: kvaei LQVPpmrvyE-VATFY tmynr NUHM_HUMAN : 105- 119: kvaev LQVPpmrvyE-VATFY tmynr NUHM_NEUCR : 113- 127: evarl LEMPpmrvyE-VASFY tmynr NUHM_RAT : 97- 111: kvaev LQVPpmrvyE-VATFY tmynr NUOE_ECOLI : 62- 76: aiadv LGIPasdv-EgVATFY sqifr NUOE_SALTY : 62- 76: aiadv LGIPasdv-EgVATFY sqifr Q 17: 32.5128 7( 7) C-x(3)-P-x(3)-I-x(1,2)-D-x-[HY]-x-[DEH]-x(2)-[PTV]-x(3)-[AIP]-x(2)-[ILV]-x-[DRS] Occurences: 7(7) NQO2_PARDE : 141- 168: eclga CtnaPmaqIgkDfYeDltVeklAalIdR faage NUHM_BOVIN : 180- 206: eclga CvnaPmvqIn-DnYyEdlTpkdIeeIiD elkag NUHM_HUMAN : 180- 206: eclga CvnaPmvqIn-DnYyEdlTakdIeeIiD elkag NUHM_NEUCR : 190- 216: eclga CanaPmvqIn-DdYfEdlTpetIkqVlS alkes NUHM_RAT : 172- 198: eclga CvnaPmvqIn-DdYyEdlTpkdIeeIiD elrag NUOE_ECOLI : 137- 164: cclgn CdkgPnmmIdeDtHaHltPeaiPelLeR yk NUOE_SALTY : 137- 164: cclgn CdkgPnmmIdeDtHsHltPeaiPelLeR yk R 18: 27.1957 11( 7) P-x(4,5)-E-x(0,1)-V-A-[ST]-F-Y Occurences: 11(7) NQO2_PARDE : 68- 79: dllgm PyiralE-VATFY fmfql NUHM_BOVIN : 108- 119: eilqv PpmrvyE-VATFY tmynr NUHM_BOVIN : 109- 119: ilqvp Pmrvy-E-VATFY tmynr NUHM_HUMAN : 108- 119: evlqv PpmrvyE-VATFY tmynr NUHM_HUMAN : 109- 119: vlqvp Pmrvy-E-VATFY tmynr NUHM_NEUCR : 116- 127: rllem PpmrvyE-VASFY tmynr NUHM_NEUCR : 117- 127: llemp Pmrvy-E-VASFY tmynr NUHM_RAT : 100- 111: evlqv PpmrvyE-VATFY tmynr NUHM_RAT : 101- 111: vlqvp Pmrvy-E-VATFY tmynr NUOE_ECOLI : 65- 76: dvlgi Pasdv-EgVATFY sqifr NUOE_SALTY : 65- 76: dvlgi Pasdv-EgVATFY sqifr S 19: 23.5257 7( 7) E-x(0,1)-V-A-[ST]-F-Y Occurences: 7(7) NQO2_PARDE : 74- 79: yiral E-VATFY fmfql NUHM_BOVIN : 114- 119: pmrvy E-VATFY tmynr NUHM_HUMAN : 114- 119: pmrvy E-VATFY tmynr NUHM_NEUCR : 122- 127: pmrvy E-VASFY tmynr NUHM_RAT : 106- 111: pmrvy E-VATFY tmynr NUOE_ECOLI : 70- 76: pasdv EgVATFY sqifr NUOE_SALTY : 70- 76: pasdv EgVATFY sqifr T 20: 19.8556 7( 7) V-A-[ST]-F-Y Occurences: 7(7) NQO2_PARDE : 75- 79: irale VATFY fmfql NUHM_BOVIN : 115- 119: mrvye VATFY tmynr NUHM_HUMAN : 115- 119: mrvye VATFY tmynr NUHM_NEUCR : 123- 127: mrvye VASFY tmynr NUHM_RAT : 107- 111: mrvye VATFY tmynr NUOE_ECOLI : 72- 76: sdveg VATFY sqifr NUOE_SALTY : 72- 76: sdveg VATFY sqifr Number of patterns evaluated by Pratt:2707 Total running time: 1 seconds