------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file COMPLEX1_20K PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename COMPLEX1_20K.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HYCG_ECOLI 255 NQO6_PARDE 173 NUJC_SYNY3 219 NUKC_MAIZE 248 NUKC_MARPO 243 NUKC_ORYSA 246 NUKC_SOYBN 224 NUKC_SYNY3 248 NUKC_TOBAC 247 NUKC_WHEAT 245 NUKM_BOVIN 216 NUKM_BRAOL 215 NUKM_PARTE 156 NUOB_ECOLI 220 Pratt run started at Thu Feb 6 19:08:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.7005 14( 14) G-x-D-x(1,2)-I-x(0,1)-P-V-D-x(3)-P-x-C-P-x(4)-A 2: 40.7005 14( 14) V-x(0,1)-G-x(1,2)-D-x(3)-P-V-D-x(3)-P-x-C-P-x(4)-A 3: 40.7005 19( 14) V-x(1,2)-G-x(1,2)-D-x(3)-P-V-D-x(3)-P-x-C-P-x(4)-A 4: 40.7005 19( 14) V-x(1,2)-G-x(0,1)-D-x(3)-P-V-D-x(3)-P-x-C-P-x(4)-A 5: 36.5305 14( 14) D-x(1,2)-I-x(0,1)-P-V-D-x(3)-P-x-C-P-x(4)-A 6: 36.5305 14( 14) D-x(3)-P-V-D-x(3)-P-x-C-P-x(0,2)-P-x-A 7: 36.0305 15( 14) I-x(0,1)-P-V-D-x(3)-P-x-C-P-x(0,2)-P-x-A 8: 32.3604 14( 14) P-V-D-x(3)-P-x-C-P-x(0,2)-P-x-A 9: 28.1904 14( 14) V-D-x(3)-P-x-C-P-x(0,2)-P-x-A 10: 24.0203 14( 14) D-x(3)-P-x-C-P-x(0,2)-P-x-A 11: 19.8503 14( 14) P-x-C-P-x(0,2)-P-x-A 12: 19.8503 14( 14) P-R-x(2)-D-x(5)-G-x(0,2)-T 13: 19.3503 14( 14) D-x(5)-G-x(0,1)-T-x(1,3)-K-x(2)-P 14: 16.1802 22( 14) P-x(2)-V-x(3)-G-x(0,1)-C 15: 15.6802 14( 14) C-P-x(0,2)-P-x-A 16: 15.6802 14( 14) V-x-G-x(1,2)-D-x(1,2)-I 17: 15.6802 19( 14) V-x(1,2)-G-x-D-x(1,2)-I 18: 15.6802 14( 14) G-T-x(1,3)-K-x(2)-P 19: 15.6802 14( 14) R-x(2,3)-R-Q-x(1,2)-D 20: 15.1802 16( 14) P-x(2)-A-x(1,2)-L-x(2,4)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 75.5334 14( 14) V-x(0,1)-G-x(1,2)-D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] B 2: 75.5334 19( 14) V-x(1,2)-G-x(1,2)-D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] C 3: 75.5334 19( 14) V-x(1,2)-G-x(0,1)-D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] D 4: 73.3454 14( 14) R-x(2,3)-R-Q-x(1,2)-D-x(2)-[ILV]-[TV]-x-[GL]-[GT]-x(3)-[EK]-x-[AV]-[AP]-x(4)-[ALV]-x-[DEN]-[DEQ]-x(3)-[NP]-[EKR]-x-V-x(2)-[LM]-[GN]-x-[CV]-[ATV]-x-[EGST]-[AG] E 5: 68.9977 14( 14) G-[CTV]-D-x(1,2)-I-x(0,1)-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] F 6: 63.5761 14( 14) D-x(3)-[TV]-x-G-x(0,1)-T-x(1,3)-K-x-[AV]-P-[ASV]-x(3)-[ILV]-x-[DEG]-x(2)-[ALP]-[DET]-P-x(2)-[TV]-[ILV]-x(3)-[AS]-x-[AT]-x-[GST]-[AGL]-[GL] G 7: 62.1908 14( 14) D-x(1,2)-I-x(0,1)-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] H 8: 56.7342 14( 14) G-T-x(1,3)-K-x-[AV]-P-[ASV]-x(3)-[ILV]-x-[DEG]-x(2)-[ALP]-[DET]-P-x(2)-[TV]-[ILV]-x(3)-[AS]-x-[AT]-x-[GST]-[AGL]-[GL] I 9: 51.1267 14( 14) D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A J 10: 48.2768 19( 14) V-x(1,2)-G-[CTV]-D-x(1,2)-I-[PV]-[PV]-[DV]-x(3)-[IPV]-x-[CG]-[CP]-[PT]-x-[APT]-x-[AE]-x(4)-[GILV] K 11: 45.6400 14( 14) V-x-G-x(1,2)-D-x(1,2)-I-[PV]-[PV]-[DV]-x(3)-[IPV]-x-[CG]-[CP]-[PT]-x-[APT]-x-[AE]-x(4)-[GILV] L 12: 41.4542 15( 14) I-x(0,1)-P-V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A M 13: 40.8772 14( 14) P-R-x-[AS]-D-x-[ILM]-[ILV]-x-[ATV]-G-x(0,2)-T-x(3)-[KR]-x-[AP]-[AP] N 14: 37.7841 14( 14) P-V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A O 15: 33.6141 14( 14) V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A P 16: 29.4440 14( 14) D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A Q 17: 27.2083 14( 14) P-x(2)-V-x(3)-G-x(0,1)-C-[APT]-x-[GST]-[AGP]-[AG] R 18: 22.4778 14( 14) P-x-C-P-x(0,2)-P-[AET]-A S 19: 18.3521 14( 14) D-x(3)-[TV]-x-G-x(0,1)-T-x(1,3)-K T 20: 18.3077 14( 14) C-P-x(0,2)-P-[AET]-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 75.5334 14( 14) V-x(0,1)-G-x(1,2)-D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] Occurences: 14(14) HYCG_ECOLI : 128- 163: hdlyc VwGgtDKIVPVDVyiPgCPPtPAAtLyGFamAlglL eqkih NQO6_PARDE : 132- 166: ysysv VrGc-DRIVPVDIyvPgCPPtAEAlLyGIlqLqrrA sgapa NUJC_SYNY3 : 133- 167: dspta VrGv-DKLIPVDVyiPgCPPrPEAvIdGIikLrkkV agesr NUKC_MAIZE : 144- 178: dsyst VrGv-DKLIPVDVylPgCPPkPEAvIdALtkLrkkI areii NUKC_MARPO : 145- 179: dsytt VrGv-DKLIPVDIylPgCPPkPEAiIdAIikLrkkI aqeiy NUKC_ORYSA : 144- 178: dsyst VrGv-DKLIPVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKC_SOYBN : 120- 154: dsyst VrGv-DKLIPVDVylPgCPTkPEAiIdAItkLrkeI sreiy NUKC_SYNY3 : 142- 176: dstta VrGv-DKLIPVDVyiPgCPPrPEAiFdAIikLrkkV anesi NUKC_TOBAC : 145- 179: dsyst VrGv-DKLIPVDVylPgCPPkPEAvIdAItkLrkkI srely NUKC_WHEAT : 143- 177: dsyst VrGv-DKLIPVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKM_BOVIN : 170- 204: ysysv VrGc-DRIVPVDIyvPgCPPtAEAlLyGIlqLqkkI krekr NUKM_BRAOL : 169- 203: ysysv VrGc-DRIVPVDIyvPgCPPtAEAlLyGLlqLqkkI nrrkd NUKM_PARTE : 112- 146: ysyav VkGc-DKIIPVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUOB_ECOLI : 142- 176: diysv VqGv-DKFIPVDVyiPgCPPrPEAyMqALmlLqesI gkerr B 2: 75.5334 19( 14) V-x(1,2)-G-x(1,2)-D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] Occurences: 19(14) HYCG_ECOLI : 128- 163: hdlyc VwgGt-DKIVPVDVyiPgCPPtPAAtLyGFamAlglL eqkih HYCG_ECOLI : 128- 163: hdlyc Vw-GgtDKIVPVDVyiPgCPPtPAAtLyGFamAlglL eqkih NQO6_PARDE : 131- 166: hysys VvrGc-DRIVPVDIyvPgCPPtAEAlLyGIlqLqrrA sgapa NQO6_PARDE : 132- 166: ysysv Vr-Gc-DRIVPVDIyvPgCPPtAEAlLyGIlqLqrrA sgapa NUJC_SYNY3 : 133- 167: dspta Vr-Gv-DKLIPVDVyiPgCPPrPEAvIdGIikLrkkV agesr NUKC_MAIZE : 144- 178: dsyst Vr-Gv-DKLIPVDVylPgCPPkPEAvIdALtkLrkkI areii NUKC_MARPO : 145- 179: dsytt Vr-Gv-DKLIPVDIylPgCPPkPEAiIdAIikLrkkI aqeiy NUKC_ORYSA : 144- 178: dsyst Vr-Gv-DKLIPVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKC_SOYBN : 120- 154: dsyst Vr-Gv-DKLIPVDVylPgCPTkPEAiIdAItkLrkeI sreiy NUKC_SYNY3 : 142- 176: dstta Vr-Gv-DKLIPVDVyiPgCPPrPEAiFdAIikLrkkV anesi NUKC_TOBAC : 145- 179: dsyst Vr-Gv-DKLIPVDVylPgCPPkPEAvIdAItkLrkkI srely NUKC_WHEAT : 143- 177: dsyst Vr-Gv-DKLIPVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKM_BOVIN : 169- 204: hysys VvrGc-DRIVPVDIyvPgCPPtAEAlLyGIlqLqkkI krekr NUKM_BOVIN : 170- 204: ysysv Vr-Gc-DRIVPVDIyvPgCPPtAEAlLyGIlqLqkkI krekr NUKM_BRAOL : 168- 203: hysys VvrGc-DRIVPVDIyvPgCPPtAEAlLyGLlqLqkkI nrrkd NUKM_BRAOL : 169- 203: ysysv Vr-Gc-DRIVPVDIyvPgCPPtAEAlLyGLlqLqkkI nrrkd NUKM_PARTE : 111- 146: hysya VvkGc-DKIIPVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUKM_PARTE : 112- 146: ysyav Vk-Gc-DKIIPVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUOB_ECOLI : 141- 176: ydiys VvqGv-DKFIPVDVyiPgCPPrPEAyMqALmlLqesI gkerr NUOB_ECOLI : 142- 176: diysv Vq-Gv-DKFIPVDVyiPgCPPrPEAyMqALmlLqesI gkerr C 3: 75.5334 19( 14) V-x(1,2)-G-x(0,1)-D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] Occurences: 19(14) HYCG_ECOLI : 128- 163: hdlyc VwgGtDKIVPVDVyiPgCPPtPAAtLyGFamAlglL eqkih NQO6_PARDE : 131- 166: hysys VvrGcDRIVPVDIyvPgCPPtAEAlLyGIlqLqrrA sgapa NQO6_PARDE : 132- 166: ysysv Vr-GcDRIVPVDIyvPgCPPtAEAlLyGIlqLqrrA sgapa NUJC_SYNY3 : 133- 167: dspta Vr-GvDKLIPVDVyiPgCPPrPEAvIdGIikLrkkV agesr NUKC_MAIZE : 144- 178: dsyst Vr-GvDKLIPVDVylPgCPPkPEAvIdALtkLrkkI areii NUKC_MARPO : 145- 179: dsytt Vr-GvDKLIPVDIylPgCPPkPEAiIdAIikLrkkI aqeiy NUKC_ORYSA : 144- 178: dsyst Vr-GvDKLIPVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKC_SOYBN : 120- 154: dsyst Vr-GvDKLIPVDVylPgCPTkPEAiIdAItkLrkeI sreiy NUKC_SYNY3 : 142- 176: dstta Vr-GvDKLIPVDVyiPgCPPrPEAiFdAIikLrkkV anesi NUKC_TOBAC : 145- 179: dsyst Vr-GvDKLIPVDVylPgCPPkPEAvIdAItkLrkkI srely NUKC_WHEAT : 143- 177: dsyst Vr-GvDKLIPVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKM_BOVIN : 169- 204: hysys VvrGcDRIVPVDIyvPgCPPtAEAlLyGIlqLqkkI krekr NUKM_BOVIN : 170- 204: ysysv Vr-GcDRIVPVDIyvPgCPPtAEAlLyGIlqLqkkI krekr NUKM_BRAOL : 168- 203: hysys VvrGcDRIVPVDIyvPgCPPtAEAlLyGLlqLqkkI nrrkd NUKM_BRAOL : 169- 203: ysysv Vr-GcDRIVPVDIyvPgCPPtAEAlLyGLlqLqkkI nrrkd NUKM_PARTE : 111- 146: hysya VvkGcDKIIPVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUKM_PARTE : 112- 146: ysyav Vk-GcDKIIPVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUOB_ECOLI : 141- 176: ydiys VvqGvDKFIPVDVyiPgCPPrPEAyMqALmlLqesI gkerr NUOB_ECOLI : 142- 176: diysv Vq-GvDKFIPVDVyiPgCPPrPEAyMqALmlLqesI gkerr D 4: 73.3454 14( 14) R-x(2,3)-R-Q-x(1,2)-D-x(2)-[ILV]-[TV]-x-[GL]-[GT]-x(3)-[EK]-x-[AV]-[AP]-x(4)-[ALV]-x-[DEN]-[DEQ]-x(3)-[NP]-[EKR]-x-V-x(2)-[LM]-[GN]-x-[CV]-[ATV]-x-[EGST]-[AG] Occurences: 14(14) HYCG_ECOLI : 206- 252: rlagy Ryg-RQiaDdyLTqLGqgeEqVArwleAeNDprlNEiVshLNhVVeEA rir NQO6_PARDE : 76- 122: fgtap RaspRQs-DlmIVaGTltnKmAPalrkVyDQmpePRyVisMGsCAnGG gyyhy NUJC_SYNY3 : 76- 122: fgsip RatpRQa-DlmITaGTitmKyAPalvqLyEQipePKyViaMGaCTiTA gmfsa NUKC_MAIZE : 87- 133: yglvp RsspRQa-DliLTaGTvtmKmAPslvrLyEQmpePKyViaMGaCTiTG gmfst NUKC_MARPO : 88- 134: yglvp RsspRQa-DliITaGTvtmKmAPslvrLyEQmpePKyViaMGaCTiTG gmfst NUKC_ORYSA : 87- 133: yglvp RsspRQa-DliLTaGTvtmKmAPslvrLyEQmpePKyViaMGaCTiTG gmfst NUKC_SOYBN : 63- 109: yglvp RsspRQa-DliLTvGTvtmKmAPslvrLyEQmpePKyViaMGaCTiTG gmfst NUKC_SYNY3 : 85- 131: fglvp RsspRQa-DliITaGTitmKmAPalvrLyEEmpePKyViaMGaCTiTG gmfss NUKC_TOBAC : 88- 134: yglvp RsspRQa-DliLTaGTvtmKmAPslvrLyEQmpePKyViaMGaCTiTG gmfst NUKC_WHEAT : 86- 132: yglvp RsspRQa-DliLTaGTvtmKmAPslvrLyEQmpePKyViaMGaCTiTG gmfst NUKM_BOVIN : 114- 160: fgvvf RaspRQs-DvmIVaGTltnKmAPalrkVyDQmpePRyVvsMGsCAnGG gyyhy NUKM_BRAOL : 113- 159: fgiif RpspRQs-DcmIVaGTltnKmAPalrkVyDQmpePRwVisMGsCAnGG gyyhy NUKM_PARTE : 56- 102: fgvif RatpRQa-DliIVaGTvtnKmAPalrrLyDQtadPKwVlsMGsCAnGG gyyhy NUOB_ECOLI : 87- 133: gaevl RaspRQa-DlmVVaGTcftKmAPviqrLyDQmlePKwVisMGaCAnSG gmydi E 5: 68.9977 14( 14) G-[CTV]-D-x(1,2)-I-x(0,1)-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] Occurences: 14(14) HYCG_ECOLI : 131- 163: ycvwg GTDk-IvPVDVyiPgCPPtPAAtLyGFamAlglL eqkih NQO6_PARDE : 134- 166: ysvvr GCDr-IvPVDIyvPgCPPtAEAlLyGIlqLqrrA sgapa NUJC_SYNY3 : 135- 167: ptavr GVDklI-PVDVyiPgCPPrPEAvIdGIikLrkkV agesr NUKC_MAIZE : 146- 178: ystvr GVDklI-PVDVylPgCPPkPEAvIdALtkLrkkI areii NUKC_MARPO : 147- 179: yttvr GVDklI-PVDIylPgCPPkPEAiIdAIikLrkkI aqeiy NUKC_ORYSA : 146- 178: ystvr GVDklI-PVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKC_SOYBN : 122- 154: ystvr GVDklI-PVDVylPgCPTkPEAiIdAItkLrkeI sreiy NUKC_SYNY3 : 144- 176: ttavr GVDklI-PVDVyiPgCPPrPEAiFdAIikLrkkV anesi NUKC_TOBAC : 147- 179: ystvr GVDklI-PVDVylPgCPPkPEAvIdAItkLrkkI srely NUKC_WHEAT : 145- 177: ystvr GVDklI-PVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKM_BOVIN : 172- 204: ysvvr GCDr-IvPVDIyvPgCPPtAEAlLyGIlqLqkkI krekr NUKM_BRAOL : 171- 203: ysvvr GCDr-IvPVDIyvPgCPPtAEAlLyGLlqLqkkI nrrkd NUKM_PARTE : 114- 146: yavvk GCDkiI-PVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUKM_PARTE : 114- 146: yavvk GCDk-IiPVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUOB_ECOLI : 144- 176: ysvvq GVDkfI-PVDVyiPgCPPrPEAyMqALmlLqesI gkerr F 6: 63.5761 14( 14) D-x(3)-[TV]-x-G-x(0,1)-T-x(1,3)-K-x-[AV]-P-[ASV]-x(3)-[ILV]-x-[DEG]-x(2)-[ALP]-[DET]-P-x(2)-[TV]-[ILV]-x(3)-[AS]-x-[AT]-x-[GST]-[AGL]-[GL] Occurences: 14(14) HYCG_ECOLI : 124- 163: ggifh DlycVwGgTd--KiVPVdvyIpGcpPTPaaTLygfAmAlGLL eqkih NQO6_PARDE : 83- 123: sprqs DlmiVaG-TltnKmAPAlrkVyDqmPEPryVIsmgScAnGGG yyhys NUJC_SYNY3 : 83- 123: tprqa DlmiTaG-TitmKyAPAlvqLyEqiPEPkyVIamgAcTiTAG mfsad NUKC_MAIZE : 94- 134: sprqa DlilTaG-TvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_MARPO : 95- 135: sprqa DliiTaG-TvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_ORYSA : 94- 134: sprqa DlilTaG-TvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_SOYBN : 70- 110: sprqa DlilTvG-TvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_SYNY3 : 92- 132: sprqa DliiTaG-TitmKmAPAlvrLyEemPEPkyVIamgAcTiTGG mfssd NUKC_TOBAC : 95- 135: sprqa DlilTaG-TvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_WHEAT : 93- 133: sprqa DlilTaG-TvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKM_BOVIN : 121- 161: sprqs DvmiVaG-TltnKmAPAlrkVyDqmPEPryVVsmgScAnGGG yyhys NUKM_BRAOL : 120- 160: sprqs DcmiVaG-TltnKmAPAlrkVyDqmPEPrwVIsmgScAnGGG yyhys NUKM_PARTE : 63- 103: tprqa DliiVaG-TvtnKmAPAlrrLyDqtADPkwVLsmgScAnGGG yyhys NUOB_ECOLI : 94- 134: sprqa DlmvVaG-TcftKmAPViqrLyDqmLEPkwVIsmgAcAnSGG mydiy G 7: 62.1908 14( 14) D-x(1,2)-I-x(0,1)-P-V-D-[IMV]-x(2)-P-x-C-P-[PT]-x-[AP]-[AE]-A-x-[FILM]-x-[AG]-[FILV]-x(2)-[AL]-x(3)-[AILV] Occurences: 14(14) HYCG_ECOLI : 133- 163: vwggt Dk-IvPVDVyiPgCPPtPAAtLyGFamAlglL eqkih NQO6_PARDE : 136- 166: vvrgc Dr-IvPVDIyvPgCPPtAEAlLyGIlqLqrrA sgapa NUJC_SYNY3 : 137- 167: avrgv DklI-PVDVyiPgCPPrPEAvIdGIikLrkkV agesr NUKC_MAIZE : 148- 178: tvrgv DklI-PVDVylPgCPPkPEAvIdALtkLrkkI areii NUKC_MARPO : 149- 179: tvrgv DklI-PVDIylPgCPPkPEAiIdAIikLrkkI aqeiy NUKC_ORYSA : 148- 178: tvrgv DklI-PVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKC_SOYBN : 124- 154: tvrgv DklI-PVDVylPgCPTkPEAiIdAItkLrkeI sreiy NUKC_SYNY3 : 146- 176: avrgv DklI-PVDVyiPgCPPrPEAiFdAIikLrkkV anesi NUKC_TOBAC : 149- 179: tvrgv DklI-PVDVylPgCPPkPEAvIdAItkLrkkI srely NUKC_WHEAT : 147- 177: tvrgv DklI-PVDVylPgCPPkPEAvIdALtkLrkkI sreiv NUKM_BOVIN : 174- 204: vvrgc Dr-IvPVDIyvPgCPPtAEAlLyGIlqLqkkI krekr NUKM_BRAOL : 173- 203: vvrgc Dr-IvPVDIyvPgCPPtAEAlLyGLlqLqkkI nrrkd NUKM_PARTE : 116- 146: vvkgc DkiI-PVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUKM_PARTE : 116- 146: vvkgc Dk-IiPVDMlcPrCPPtAEAlFfGVlqLqktL mktin NUOB_ECOLI : 146- 176: vvqgv DkfI-PVDVyiPgCPPrPEAyMqALmlLqesI gkerr H 8: 56.7342 14( 14) G-T-x(1,3)-K-x-[AV]-P-[ASV]-x(3)-[ILV]-x-[DEG]-x(2)-[ALP]-[DET]-P-x(2)-[TV]-[ILV]-x(3)-[AS]-x-[AT]-x-[GST]-[AGL]-[GL] Occurences: 14(14) HYCG_ECOLI : 131- 163: ycvwg GTd--KiVPVdvyIpGcpPTPaaTLygfAmAlGLL eqkih NQO6_PARDE : 89- 123: lmiva GTltnKmAPAlrkVyDqmPEPryVIsmgScAnGGG yyhys NUJC_SYNY3 : 89- 123: lmita GTitmKyAPAlvqLyEqiPEPkyVIamgAcTiTAG mfsad NUKC_MAIZE : 100- 134: lilta GTvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_MARPO : 101- 135: liita GTvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_ORYSA : 100- 134: lilta GTvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_SOYBN : 76- 110: liltv GTvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_SYNY3 : 98- 132: liita GTitmKmAPAlvrLyEemPEPkyVIamgAcTiTGG mfssd NUKC_TOBAC : 101- 135: lilta GTvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKC_WHEAT : 99- 133: lilta GTvtmKmAPSlvrLyEqmPEPkyVIamgAcTiTGG mfstd NUKM_BOVIN : 127- 161: vmiva GTltnKmAPAlrkVyDqmPEPryVVsmgScAnGGG yyhys NUKM_BRAOL : 126- 160: cmiva GTltnKmAPAlrkVyDqmPEPrwVIsmgScAnGGG yyhys NUKM_PARTE : 69- 103: liiva GTvtnKmAPAlrrLyDqtADPkwVLsmgScAnGGG yyhys NUOB_ECOLI : 100- 134: lmvva GTcftKmAPViqrLyDqmLEPkwVIsmgAcAnSGG mydiy I 9: 51.1267 14( 14) D-[KR]-[FIL]-[IV]-P-V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A Occurences: 14(14) HYCG_ECOLI : 133- 151: vwggt DKIVPVDVyiPgCPptPAA tlygf NQO6_PARDE : 136- 152: vvrgc DRIVPVDIyvPgCP--PTA eally NUJC_SYNY3 : 137- 155: avrgv DKLIPVDVyiPgCPprPEA vidgi NUKC_MAIZE : 148- 166: tvrgv DKLIPVDVylPgCPpkPEA vidal NUKC_MARPO : 149- 167: tvrgv DKLIPVDIylPgCPpkPEA iidai NUKC_ORYSA : 148- 166: tvrgv DKLIPVDVylPgCPpkPEA vidal NUKC_SOYBN : 124- 142: tvrgv DKLIPVDVylPgCPtkPEA iidai NUKC_SYNY3 : 146- 164: avrgv DKLIPVDVyiPgCPprPEA ifdai NUKC_TOBAC : 149- 167: tvrgv DKLIPVDVylPgCPpkPEA vidai NUKC_WHEAT : 147- 165: tvrgv DKLIPVDVylPgCPpkPEA vidal NUKM_BOVIN : 174- 190: vvrgc DRIVPVDIyvPgCP--PTA eally NUKM_BRAOL : 173- 189: vvrgc DRIVPVDIyvPgCP--PTA eally NUKM_PARTE : 116- 132: vvkgc DKIIPVDMlcPrCP--PTA ealff NUOB_ECOLI : 146- 164: vvqgv DKFIPVDVyiPgCPprPEA ymqal J 10: 48.2768 19( 14) V-x(1,2)-G-[CTV]-D-x(1,2)-I-[PV]-[PV]-[DV]-x(3)-[IPV]-x-[CG]-[CP]-[PT]-x-[APT]-x-[AE]-x(4)-[GILV] Occurences: 19(14) HYCG_ECOLI : 128- 155: hdlyc VwgGTDk-IVPVdvyIpGCPpTpAatlyG famal NQO6_PARDE : 131- 158: hysys VvrGCDr-IVPVdiyVpGCPpTaEallyG ilqlq NQO6_PARDE : 132- 158: ysysv Vr-GCDr-IVPVdiyVpGCPpTaEallyG ilqlq NUJC_SYNY3 : 133- 160: dspta Vr-GVDklIPVDvyiPgCPPrPeAvidgI iklrk NUKC_MAIZE : 144- 171: dsyst Vr-GVDklIPVDvylPgCPPkPeAvidaL tklrk NUKC_MARPO : 145- 172: dsytt Vr-GVDklIPVDiylPgCPPkPeAiidaI iklrk NUKC_ORYSA : 144- 171: dsyst Vr-GVDklIPVDvylPgCPPkPeAvidaL tklrk NUKC_SOYBN : 120- 147: dsyst Vr-GVDklIPVDvylPgCPTkPeAiidaI tklrk NUKC_SYNY3 : 142- 169: dstta Vr-GVDklIPVDvyiPgCPPrPeAifdaI iklrk NUKC_TOBAC : 145- 172: dsyst Vr-GVDklIPVDvylPgCPPkPeAvidaI tklrk NUKC_WHEAT : 143- 170: dsyst Vr-GVDklIPVDvylPgCPPkPeAvidaL tklrk NUKM_BOVIN : 169- 196: hysys VvrGCDr-IVPVdiyVpGCPpTaEallyG ilqlq NUKM_BOVIN : 170- 196: ysysv Vr-GCDr-IVPVdiyVpGCPpTaEallyG ilqlq NUKM_BRAOL : 168- 195: hysys VvrGCDr-IVPVdiyVpGCPpTaEallyG llqlq NUKM_BRAOL : 169- 195: ysysv Vr-GCDr-IVPVdiyVpGCPpTaEallyG llqlq NUKM_PARTE : 111- 139: hysya VvkGCDkiIPVDmlcPrCPPtAeAlffgV lqlqk NUKM_PARTE : 112- 139: ysyav Vk-GCDkiIPVDmlcPrCPPtAeAlffgV lqlqk NUOB_ECOLI : 141- 169: ydiys VvqGVDkfIPVDvyiPgCPPrPeAymqaL mllqe NUOB_ECOLI : 142- 169: diysv Vq-GVDkfIPVDvyiPgCPPrPeAymqaL mllqe K 11: 45.6400 14( 14) V-x-G-x(1,2)-D-x(1,2)-I-[PV]-[PV]-[DV]-x(3)-[IPV]-x-[CG]-[CP]-[PT]-x-[APT]-x-[AE]-x(4)-[GILV] Occurences: 14(14) HYCG_ECOLI : 128- 155: hdlyc VwGgtDk-IVPVdvyIpGCPpTpAatlyG famal NQO6_PARDE : 132- 158: ysysv VrGc-Dr-IVPVdiyVpGCPpTaEallyG ilqlq NUJC_SYNY3 : 133- 160: dspta VrGv-DklIPVDvyiPgCPPrPeAvidgI iklrk NUKC_MAIZE : 144- 171: dsyst VrGv-DklIPVDvylPgCPPkPeAvidaL tklrk NUKC_MARPO : 145- 172: dsytt VrGv-DklIPVDiylPgCPPkPeAiidaI iklrk NUKC_ORYSA : 144- 171: dsyst VrGv-DklIPVDvylPgCPPkPeAvidaL tklrk NUKC_SOYBN : 120- 147: dsyst VrGv-DklIPVDvylPgCPTkPeAiidaI tklrk NUKC_SYNY3 : 142- 169: dstta VrGv-DklIPVDvyiPgCPPrPeAifdaI iklrk NUKC_TOBAC : 145- 172: dsyst VrGv-DklIPVDvylPgCPPkPeAvidaI tklrk NUKC_WHEAT : 143- 170: dsyst VrGv-DklIPVDvylPgCPPkPeAvidaL tklrk NUKM_BOVIN : 170- 196: ysysv VrGc-Dr-IVPVdiyVpGCPpTaEallyG ilqlq NUKM_BRAOL : 169- 195: ysysv VrGc-Dr-IVPVdiyVpGCPpTaEallyG llqlq NUKM_PARTE : 112- 139: ysyav VkGc-DkiIPVDmlcPrCPPtAeAlffgV lqlqk NUOB_ECOLI : 142- 169: diysv VqGv-DkfIPVDvyiPgCPPrPeAymqaL mllqe L 12: 41.4542 15( 14) I-x(0,1)-P-V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A Occurences: 15(14) HYCG_ECOLI : 135- 151: ggtdk IvPVDVyiPgCPptPAA tlygf NQO6_PARDE : 138- 152: rgcdr IvPVDIyvPgCP--PTA eally NUJC_SYNY3 : 140- 155: gvdkl I-PVDVyiPgCPprPEA vidgi NUKC_MAIZE : 151- 166: gvdkl I-PVDVylPgCPpkPEA vidal NUKC_MARPO : 152- 167: gvdkl I-PVDIylPgCPpkPEA iidai NUKC_ORYSA : 151- 166: gvdkl I-PVDVylPgCPpkPEA vidal NUKC_SOYBN : 127- 142: gvdkl I-PVDVylPgCPtkPEA iidai NUKC_SYNY3 : 149- 164: gvdkl I-PVDVyiPgCPprPEA ifdai NUKC_TOBAC : 152- 167: gvdkl I-PVDVylPgCPpkPEA vidai NUKC_WHEAT : 150- 165: gvdkl I-PVDVylPgCPpkPEA vidal NUKM_BOVIN : 176- 190: rgcdr IvPVDIyvPgCP--PTA eally NUKM_BRAOL : 175- 189: rgcdr IvPVDIyvPgCP--PTA eally NUKM_PARTE : 118- 132: kgcdk IiPVDMlcPrCP--PTA ealff NUKM_PARTE : 119- 132: gcdki I-PVDMlcPrCP--PTA ealff NUOB_ECOLI : 149- 164: gvdkf I-PVDVyiPgCPprPEA ymqal M 13: 40.8772 14( 14) P-R-x-[AS]-D-x-[ILM]-[ILV]-x-[ATV]-G-x(0,2)-T-x(3)-[KR]-x-[AP]-[AP] Occurences: 14(14) HYCG_ECOLI : 76- 96: kvvps PRhADiLLfTGavTramRsPA lrawq NQO6_PARDE : 79- 97: apras PRqSDlMIvAG--TltnKmAP alrkv NUJC_SYNY3 : 79- 97: iprat PRqADlMItAG--TitmKyAP alvql NUKC_MAIZE : 90- 108: vprss PRqADlILtAG--TvtmKmAP slvrl NUKC_MARPO : 91- 109: vprss PRqADlIItAG--TvtmKmAP slvrl NUKC_ORYSA : 90- 108: vprss PRqADlILtAG--TvtmKmAP slvrl NUKC_SOYBN : 66- 84: vprss PRqADlILtVG--TvtmKmAP slvrl NUKC_SYNY3 : 88- 106: vprss PRqADlIItAG--TitmKmAP alvrl NUKC_TOBAC : 91- 109: vprss PRqADlILtAG--TvtmKmAP slvrl NUKC_WHEAT : 89- 107: vprss PRqADlILtAG--TvtmKmAP slvrl NUKM_BOVIN : 117- 135: vfras PRqSDvMIvAG--TltnKmAP alrkv NUKM_BRAOL : 116- 134: ifrps PRqSDcMIvAG--TltnKmAP alrkv NUKM_PARTE : 59- 77: ifrat PRqADlIIvAG--TvtnKmAP alrrl NUOB_ECOLI : 90- 108: vlras PRqADlMVvAG--TcftKmAP viqrl N 14: 37.7841 14( 14) P-V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A Occurences: 14(14) HYCG_ECOLI : 137- 151: tdkiv PVDVyiPgCPptPAA tlygf NQO6_PARDE : 140- 152: cdriv PVDIyvPgCP--PTA eally NUJC_SYNY3 : 141- 155: vdkli PVDVyiPgCPprPEA vidgi NUKC_MAIZE : 152- 166: vdkli PVDVylPgCPpkPEA vidal NUKC_MARPO : 153- 167: vdkli PVDIylPgCPpkPEA iidai NUKC_ORYSA : 152- 166: vdkli PVDVylPgCPpkPEA vidal NUKC_SOYBN : 128- 142: vdkli PVDVylPgCPtkPEA iidai NUKC_SYNY3 : 150- 164: vdkli PVDVyiPgCPprPEA ifdai NUKC_TOBAC : 153- 167: vdkli PVDVylPgCPpkPEA vidai NUKC_WHEAT : 151- 165: vdkli PVDVylPgCPpkPEA vidal NUKM_BOVIN : 178- 190: cdriv PVDIyvPgCP--PTA eally NUKM_BRAOL : 177- 189: cdriv PVDIyvPgCP--PTA eally NUKM_PARTE : 120- 132: cdkii PVDMlcPrCP--PTA ealff NUOB_ECOLI : 150- 164: vdkfi PVDVyiPgCPprPEA ymqal O 15: 33.6141 14( 14) V-D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A Occurences: 14(14) HYCG_ECOLI : 138- 151: dkivp VDVyiPgCPptPAA tlygf NQO6_PARDE : 141- 152: drivp VDIyvPgCP--PTA eally NUJC_SYNY3 : 142- 155: dklip VDVyiPgCPprPEA vidgi NUKC_MAIZE : 153- 166: dklip VDVylPgCPpkPEA vidal NUKC_MARPO : 154- 167: dklip VDIylPgCPpkPEA iidai NUKC_ORYSA : 153- 166: dklip VDVylPgCPpkPEA vidal NUKC_SOYBN : 129- 142: dklip VDVylPgCPtkPEA iidai NUKC_SYNY3 : 151- 164: dklip VDVyiPgCPprPEA ifdai NUKC_TOBAC : 154- 167: dklip VDVylPgCPpkPEA vidai NUKC_WHEAT : 152- 165: dklip VDVylPgCPpkPEA vidal NUKM_BOVIN : 179- 190: drivp VDIyvPgCP--PTA eally NUKM_BRAOL : 178- 189: drivp VDIyvPgCP--PTA eally NUKM_PARTE : 121- 132: dkiip VDMlcPrCP--PTA ealff NUOB_ECOLI : 151- 164: dkfip VDVyiPgCPprPEA ymqal P 16: 29.4440 14( 14) D-[IMV]-x(2)-P-x-C-P-x(0,2)-P-[AET]-A Occurences: 14(14) HYCG_ECOLI : 139- 151: kivpv DVyiPgCPptPAA tlygf NQO6_PARDE : 142- 152: rivpv DIyvPgCP--PTA eally NUJC_SYNY3 : 143- 155: klipv DVyiPgCPprPEA vidgi NUKC_MAIZE : 154- 166: klipv DVylPgCPpkPEA vidal NUKC_MARPO : 155- 167: klipv DIylPgCPpkPEA iidai NUKC_ORYSA : 154- 166: klipv DVylPgCPpkPEA vidal NUKC_SOYBN : 130- 142: klipv DVylPgCPtkPEA iidai NUKC_SYNY3 : 152- 164: klipv DVyiPgCPprPEA ifdai NUKC_TOBAC : 155- 167: klipv DVylPgCPpkPEA vidai NUKC_WHEAT : 153- 165: klipv DVylPgCPpkPEA vidal NUKM_BOVIN : 180- 190: rivpv DIyvPgCP--PTA eally NUKM_BRAOL : 179- 189: rivpv DIyvPgCP--PTA eally NUKM_PARTE : 122- 132: kiipv DMlcPrCP--PTA ealff NUOB_ECOLI : 152- 164: kfipv DVyiPgCPprPEA ymqal Q 17: 27.2083 14( 14) P-x(2)-V-x(3)-G-x(0,1)-C-[APT]-x-[GST]-[AGP]-[AG] Occurences: 14(14) HYCG_ECOLI : 137- 150: tdkiv PvdVyipG-CPpTPA atlyg NQO6_PARDE : 109- 123: dqmpe PryVismGsCAnGGG yyhys NUJC_SYNY3 : 109- 123: eqipe PkyViamGaCTiTAG mfsad NUKC_MAIZE : 120- 134: eqmpe PkyViamGaCTiTGG mfstd NUKC_MARPO : 121- 135: eqmpe PkyViamGaCTiTGG mfstd NUKC_ORYSA : 120- 134: eqmpe PkyViamGaCTiTGG mfstd NUKC_SOYBN : 96- 110: eqmpe PkyViamGaCTiTGG mfstd NUKC_SYNY3 : 118- 132: eempe PkyViamGaCTiTGG mfssd NUKC_TOBAC : 121- 135: eqmpe PkyViamGaCTiTGG mfstd NUKC_WHEAT : 119- 133: eqmpe PkyViamGaCTiTGG mfstd NUKM_BOVIN : 147- 161: dqmpe PryVvsmGsCAnGGG yyhys NUKM_BRAOL : 146- 160: dqmpe PrwVismGsCAnGGG yyhys NUKM_PARTE : 89- 103: dqtad PkwVlsmGsCAnGGG yyhys NUOB_ECOLI : 120- 134: dqmle PkwVismGaCAnSGG mydiy R 18: 22.4778 14( 14) P-x-C-P-x(0,2)-P-[AET]-A Occurences: 14(14) HYCG_ECOLI : 143- 151: vdvyi PgCPptPAA tlygf NQO6_PARDE : 146- 152: vdiyv PgCP--PTA eally NUJC_SYNY3 : 147- 155: vdvyi PgCPprPEA vidgi NUKC_MAIZE : 158- 166: vdvyl PgCPpkPEA vidal NUKC_MARPO : 159- 167: vdiyl PgCPpkPEA iidai NUKC_ORYSA : 158- 166: vdvyl PgCPpkPEA vidal NUKC_SOYBN : 134- 142: vdvyl PgCPtkPEA iidai NUKC_SYNY3 : 156- 164: vdvyi PgCPprPEA ifdai NUKC_TOBAC : 159- 167: vdvyl PgCPpkPEA vidai NUKC_WHEAT : 157- 165: vdvyl PgCPpkPEA vidal NUKM_BOVIN : 184- 190: vdiyv PgCP--PTA eally NUKM_BRAOL : 183- 189: vdiyv PgCP--PTA eally NUKM_PARTE : 126- 132: vdmlc PrCP--PTA ealff NUOB_ECOLI : 156- 164: vdvyi PgCPprPEA ymqal S 19: 18.3521 14( 14) D-x(3)-[TV]-x-G-x(0,1)-T-x(1,3)-K Occurences: 14(14) HYCG_ECOLI : 124- 134: ggifh DlycVwGgTd--K ivpvd NQO6_PARDE : 83- 94: sprqs DlmiVaG-TltnK mapal NUJC_SYNY3 : 83- 94: tprqa DlmiTaG-TitmK yapal NUKC_MAIZE : 94- 105: sprqa DlilTaG-TvtmK mapsl NUKC_MARPO : 95- 106: sprqa DliiTaG-TvtmK mapsl NUKC_ORYSA : 94- 105: sprqa DlilTaG-TvtmK mapsl NUKC_SOYBN : 70- 81: sprqa DlilTvG-TvtmK mapsl NUKC_SYNY3 : 92- 103: sprqa DliiTaG-TitmK mapal NUKC_TOBAC : 95- 106: sprqa DlilTaG-TvtmK mapsl NUKC_WHEAT : 93- 104: sprqa DlilTaG-TvtmK mapsl NUKM_BOVIN : 121- 132: sprqs DvmiVaG-TltnK mapal NUKM_BRAOL : 120- 131: sprqs DcmiVaG-TltnK mapal NUKM_PARTE : 63- 74: tprqa DliiVaG-TvtnK mapal NUOB_ECOLI : 94- 105: sprqa DlmvVaG-TcftK mapvi T 20: 18.3077 14( 14) C-P-x(0,2)-P-[AET]-A Occurences: 14(14) HYCG_ECOLI : 145- 151: vyipg CPptPAA tlygf NQO6_PARDE : 148- 152: iyvpg CP--PTA eally NUJC_SYNY3 : 149- 155: vyipg CPprPEA vidgi NUKC_MAIZE : 160- 166: vylpg CPpkPEA vidal NUKC_MARPO : 161- 167: iylpg CPpkPEA iidai NUKC_ORYSA : 160- 166: vylpg CPpkPEA vidal NUKC_SOYBN : 136- 142: vylpg CPtkPEA iidai NUKC_SYNY3 : 158- 164: vyipg CPprPEA ifdai NUKC_TOBAC : 161- 167: vylpg CPpkPEA vidai NUKC_WHEAT : 159- 165: vylpg CPpkPEA vidal NUKM_BOVIN : 186- 190: iyvpg CP--PTA eally NUKM_BRAOL : 185- 189: iyvpg CP--PTA eally NUKM_PARTE : 128- 132: mlcpr CP--PTA ealff NUOB_ECOLI : 158- 164: vyipg CPprPEA ymqal Number of patterns evaluated by Pratt:1793 Total running time: 2 seconds