------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file COLIPASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename COLIPASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: COL2_PIG 95 COLA_HORSE 106 COLB_HORSE 108 COL_CANFA 112 COL_CHICK 34 COL_HUMAN 112 COL_MYOCO 111 COL_RABIT 107 COL_RAT 112 COL_SQUAC 39 Pratt run started at Thu Feb 6 19:08:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 58.3807 10( 10) G-x(4)-L-x(2)-G-E-x-C-x(2)-S-x-Q-C-K-S-x-C-C-x(5)-L-x(4)-C 2: 54.2107 10( 10) L-x(2)-G-E-x-C-x(2)-S-x-Q-C-K-S-x-C-C-x(5)-L-x(4)-C 3: 50.0406 10( 10) G-E-x-C-x(2)-S-x-Q-C-K-S-x-C-C-x(5)-L-x(4)-C 4: 45.8706 10( 10) E-x-C-x(2)-S-x-Q-C-K-S-x-C-C-x(5)-L-x(4)-C 5: 41.7005 10( 10) C-x(2)-S-x-Q-C-K-S-x-C-C-x(5)-L-x(4)-C 6: 37.5305 10( 10) S-x-Q-C-K-S-x-C-C-x(5)-L-x(4)-C 7: 33.3604 10( 10) Q-C-K-S-x-C-C-x(5)-L-x(4)-C 8: 29.1904 10( 10) C-K-S-x-C-C-x(5)-L-x(4)-C 9: 25.0203 10( 10) K-S-x-C-C-x(5)-L-x(4)-C 10: 20.8503 10( 10) S-x-C-C-x(5)-L-x(4)-C 11: 16.6802 10( 10) C-C-x(5)-L-x(4)-C 12: 16.1802 17( 10) G-x(3)-N-x(3)-G-x(1,2)-C 13: 15.6802 11( 10) C-x(1,2)-E-x(1,2)-G-L 14: 15.6802 16( 10) L-x(4,5)-C-x(1,2)-S-x(2)-C 15: 15.1802 13( 10) E-x-C-x(2,3)-S-x(2,4)-S 16: 12.5102 14( 10) L-x(2)-A-x-C 17: 12.0102 11( 10) E-x(1,2)-G-L 18: 12.0102 17( 10) N-x(3)-G-x(1,2)-C 19: 11.5102 22( 10) L-x(0,2)-A-x-C 20: 11.5102 11( 10) Q-x(0,2)-S-x(2)-C Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 94.7536 10( 10) G-[ILV]-[FIV]-[FIL]-x-L-[DES]-[ADENT]-G-E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C B 2: 82.5888 10( 10) L-[DES]-[ADENT]-G-E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C C 3: 73.9059 10( 10) G-E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C D 4: 69.7358 10( 10) E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C E 5: 62.2791 10( 10) C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C F 6: 59.9095 10( 10) L-x(4,5)-C-x(1,2)-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C G 7: 52.5694 10( 10) S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C H 8: 50.6859 10( 10) E-[IL]-C-x(2)-S-x(2,4)-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C I 9: 48.3993 10( 10) Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C J 10: 44.2292 10( 10) C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C K 11: 40.0592 10( 10) K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C L 12: 39.0592 10( 10) Q-x(0,2)-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C M 13: 35.8891 10( 10) S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C N 14: 31.7191 10( 10) C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C O 15: 30.2571 12( 10) N-x-[DENS]-x-G-x(1,2)-C-x-[DGNQ]-[AS]-x-[QR]-[CS]-K P 16: 26.4147 15( 10) G-x-[FI]-x-N-x-[DENS]-x-G-x(1,2)-C-x-[DGNQ]-[ASV] Q 17: 24.2921 11( 10) C-x(1,2)-E-x(1,2)-G-L-[ST]-x-[ADEQ]-x-[CD] R 18: 20.6220 10( 10) E-x(1,2)-G-L-[ST]-x-[ADEQ]-x-[CD] S 19: 15.1631 13( 10) L-[GNS]-x-A-x-C T 20: 14.6810 20( 10) L-x(0,2)-A-[QR]-C Best patterns with alignements: fitness hits(seqs) Pattern A 1: 94.7536 10( 10) G-[ILV]-[FIV]-[FIL]-x-L-[DES]-[ADENT]-G-E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 6- 39: vpdpr GIIInLDEGELCLNSaQCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 17- 50: vpdpr GVIInLEAGEICLNSaQCKSeCChqESsLSLArC aakas COLB_HORSE : 19- 52: vpdpr GVIInLEAGEICMNSaQCKSeCChrESsLSLArC aakas COL_CANFA : 23- 56: vpdpr GIIIhLEDGELCLNSvQCKSkCChrATgLSLArC apkas COL_CHICK : 1- 34: GLIFnLDTGELCLQSaQCKSeCCqeDSgLSLAxC COL_HUMAN : 23- 56: apgpr GIIInLENGELCMNSaQCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 23- 56: apdpr GLIInLDNGELCLNSaQCKSqCCqhDSpLGLArC adkar COL_RABIT : 23- 56: apgpr GIVInLEEGELCLNSaQCKSgCChhSSaLSLArC apkas COL_RAT : 23- 56: vpgpr GLFInLEDGEICVNSmQCKSrCCqhDTiLGIArC thkam COL_SQUAC : 5- 38: aper GLFLnLSAGELCVGSfQCKSsCCqrETgLSLArC a B 2: 82.5888 10( 10) L-[DES]-[ADENT]-G-E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 11- 39: giiin LDEGELCLNSaQCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 22- 50: gviin LEAGEICLNSaQCKSeCChqESsLSLArC aakas COLB_HORSE : 24- 52: gviin LEAGEICMNSaQCKSeCChrESsLSLArC aakas COL_CANFA : 28- 56: giiih LEDGELCLNSvQCKSkCChrATgLSLArC apkas COL_CHICK : 6- 34: glifn LDTGELCLQSaQCKSeCCqeDSgLSLAxC COL_HUMAN : 28- 56: giiin LENGELCMNSaQCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 28- 56: gliin LDNGELCLNSaQCKSqCCqhDSpLGLArC adkar COL_RABIT : 28- 56: givin LEEGELCLNSaQCKSgCChhSSaLSLArC apkas COL_RAT : 28- 56: glfin LEDGEICVNSmQCKSrCCqhDTiLGIArC thkam COL_SQUAC : 10- 38: glfln LSAGELCVGSfQCKSsCCqrETgLSLArC a C 3: 73.9059 10( 10) G-E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 14- 39: inlde GELCLNSaQCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 25- 50: inlea GEICLNSaQCKSeCChqESsLSLArC aakas COLB_HORSE : 27- 52: inlea GEICMNSaQCKSeCChrESsLSLArC aakas COL_CANFA : 31- 56: ihled GELCLNSvQCKSkCChrATgLSLArC apkas COL_CHICK : 9- 34: fnldt GELCLQSaQCKSeCCqeDSgLSLAxC COL_HUMAN : 31- 56: inlen GELCMNSaQCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 31- 56: inldn GELCLNSaQCKSqCCqhDSpLGLArC adkar COL_RABIT : 31- 56: inlee GELCLNSaQCKSgCChhSSaLSLArC apkas COL_RAT : 31- 56: inled GEICVNSmQCKSrCCqhDTiLGIArC thkam COL_SQUAC : 13- 38: lnlsa GELCVGSfQCKSsCCqrETgLSLArC a D 4: 69.7358 10( 10) E-[IL]-C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 15- 39: nldeg ELCLNSaQCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 26- 50: nleag EICLNSaQCKSeCChqESsLSLArC aakas COLB_HORSE : 28- 52: nleag EICMNSaQCKSeCChrESsLSLArC aakas COL_CANFA : 32- 56: hledg ELCLNSvQCKSkCChrATgLSLArC apkas COL_CHICK : 10- 34: nldtg ELCLQSaQCKSeCCqeDSgLSLAxC COL_HUMAN : 32- 56: nleng ELCMNSaQCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 32- 56: nldng ELCLNSaQCKSqCCqhDSpLGLArC adkar COL_RABIT : 32- 56: nleeg ELCLNSaQCKSgCChhSSaLSLArC apkas COL_RAT : 32- 56: nledg EICVNSmQCKSrCCqhDTiLGIArC thkam COL_SQUAC : 14- 38: nlsag ELCVGSfQCKSsCCqrETgLSLArC a E 5: 62.2791 10( 10) C-[LMV]-[GNQ]-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 17- 39: degel CLNSaQCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 28- 50: eagei CLNSaQCKSeCChqESsLSLArC aakas COLB_HORSE : 30- 52: eagei CMNSaQCKSeCChrESsLSLArC aakas COL_CANFA : 34- 56: edgel CLNSvQCKSkCChrATgLSLArC apkas COL_CHICK : 12- 34: dtgel CLQSaQCKSeCCqeDSgLSLAxC COL_HUMAN : 34- 56: engel CMNSaQCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 34- 56: dngel CLNSaQCKSqCCqhDSpLGLArC adkar COL_RABIT : 34- 56: eegel CLNSaQCKSgCChhSSaLSLArC apkas COL_RAT : 34- 56: edgei CVNSmQCKSrCCqhDTiLGIArC thkam COL_SQUAC : 16- 38: sagel CVGSfQCKSsCCqrETgLSLArC a F 6: 59.9095 10( 10) L-x(4,5)-C-x(1,2)-S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 11- 39: giiin LdegelClnSaQCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 22- 50: gviin LeageiClnSaQCKSeCChqESsLSLArC aakas COLB_HORSE : 24- 52: gviin LeageiCmnSaQCKSeCChrESsLSLArC aakas COL_CANFA : 28- 56: giiih LedgelClnSvQCKSkCChrATgLSLArC apkas COL_CHICK : 6- 34: glifn LdtgelClqSaQCKSeCCqeDSgLSLAxC COL_HUMAN : 28- 56: giiin LengelCmnSaQCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 28- 56: gliin LdngelClnSaQCKSqCCqhDSpLGLArC adkar COL_RABIT : 28- 56: givin LeegelClnSaQCKSgCChhSSaLSLArC apkas COL_RAT : 28- 56: glfin LedgeiCvnSmQCKSrCCqhDTiLGIArC thkam COL_SQUAC : 10- 38: glfln LsagelCvgSfQCKSsCCqrETgLSLArC a G 7: 52.5694 10( 10) S-x-Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 20- 39: elcln SaQCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 31- 50: eicln SaQCKSeCChqESsLSLArC aakas COLB_HORSE : 33- 52: eicmn SaQCKSeCChrESsLSLArC aakas COL_CANFA : 37- 56: elcln SvQCKSkCChrATgLSLArC apkas COL_CHICK : 15- 34: elclq SaQCKSeCCqeDSgLSLAxC COL_HUMAN : 37- 56: elcmn SaQCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 37- 56: elcln SaQCKSqCCqhDSpLGLArC adkar COL_RABIT : 37- 56: elcln SaQCKSgCChhSSaLSLArC apkas COL_RAT : 37- 56: eicvn SmQCKSrCCqhDTiLGIArC thkam COL_SQUAC : 19- 38: elcvg SfQCKSsCCqrETgLSLArC a H 8: 50.6859 10( 10) E-[IL]-C-x(2)-S-x(2,4)-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 15- 39: nldeg ELClnSaqckSnCCqhDTiLSLSrC alkar COLA_HORSE : 26- 50: nleag EIClnSaqckSeCChqESsLSLArC aakas COLB_HORSE : 28- 52: nleag EICmnSaqckSeCChrESsLSLArC aakas COL_CANFA : 32- 56: hledg ELClnSvqckSkCChrATgLSLArC apkas COL_CHICK : 10- 34: nldtg ELClqSaqckSeCCqeDSgLSLAxC COL_HUMAN : 32- 56: nleng ELCmnSaqckSnCCqhSSaLGLArC tsmas COL_MYOCO : 32- 56: nldng ELClnSaqckSqCCqhDSpLGLArC adkar COL_RABIT : 32- 56: nleeg ELClnSaqckSgCChhSSaLSLArC apkas COL_RAT : 32- 56: nledg EICvnSmqckSrCCqhDTiLGIArC thkam COL_SQUAC : 14- 38: nlsag ELCvgSfqckSsCCqrETgLSLArC a I 9: 48.3993 10( 10) Q-C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 22- 39: clnsa QCKSnCCqhDTiLSLSrC alkar COLA_HORSE : 33- 50: clnsa QCKSeCChqESsLSLArC aakas COLB_HORSE : 35- 52: cmnsa QCKSeCChrESsLSLArC aakas COL_CANFA : 39- 56: clnsv QCKSkCChrATgLSLArC apkas COL_CHICK : 17- 34: clqsa QCKSeCCqeDSgLSLAxC COL_HUMAN : 39- 56: cmnsa QCKSnCCqhSSaLGLArC tsmas COL_MYOCO : 39- 56: clnsa QCKSqCCqhDSpLGLArC adkar COL_RABIT : 39- 56: clnsa QCKSgCChhSSaLSLArC apkas COL_RAT : 39- 56: cvnsm QCKSrCCqhDTiLGIArC thkam COL_SQUAC : 21- 38: cvgsf QCKSsCCqrETgLSLArC a J 10: 44.2292 10( 10) C-K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 23- 39: lnsaq CKSnCCqhDTiLSLSrC alkar COLA_HORSE : 34- 50: lnsaq CKSeCChqESsLSLArC aakas COLB_HORSE : 36- 52: mnsaq CKSeCChrESsLSLArC aakas COL_CANFA : 40- 56: lnsvq CKSkCChrATgLSLArC apkas COL_CHICK : 18- 34: lqsaq CKSeCCqeDSgLSLAxC COL_HUMAN : 40- 56: mnsaq CKSnCCqhSSaLGLArC tsmas COL_MYOCO : 40- 56: lnsaq CKSqCCqhDSpLGLArC adkar COL_RABIT : 40- 56: lnsaq CKSgCChhSSaLSLArC apkas COL_RAT : 40- 56: vnsmq CKSrCCqhDTiLGIArC thkam COL_SQUAC : 22- 38: vgsfq CKSsCCqrETgLSLArC a K 11: 40.0592 10( 10) K-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 24- 39: nsaqc KSnCCqhDTiLSLSrC alkar COLA_HORSE : 35- 50: nsaqc KSeCChqESsLSLArC aakas COLB_HORSE : 37- 52: nsaqc KSeCChrESsLSLArC aakas COL_CANFA : 41- 56: nsvqc KSkCChrATgLSLArC apkas COL_CHICK : 19- 34: qsaqc KSeCCqeDSgLSLAxC COL_HUMAN : 41- 56: nsaqc KSnCCqhSSaLGLArC tsmas COL_MYOCO : 41- 56: nsaqc KSqCCqhDSpLGLArC adkar COL_RABIT : 41- 56: nsaqc KSgCChhSSaLSLArC apkas COL_RAT : 41- 56: nsmqc KSrCCqhDTiLGIArC thkam COL_SQUAC : 23- 38: gsfqc KSsCCqrETgLSLArC a L 12: 39.0592 10( 10) Q-x(0,2)-S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 22- 39: clnsa QckSnCCqhDTiLSLSrC alkar COLA_HORSE : 33- 50: clnsa QckSeCChqESsLSLArC aakas COLB_HORSE : 35- 52: cmnsa QckSeCChrESsLSLArC aakas COL_CANFA : 39- 56: clnsv QckSkCChrATgLSLArC apkas COL_CHICK : 17- 34: clqsa QckSeCCqeDSgLSLAxC COL_HUMAN : 39- 56: cmnsa QckSnCCqhSSaLGLArC tsmas COL_MYOCO : 39- 56: clnsa QckSqCCqhDSpLGLArC adkar COL_RABIT : 39- 56: clnsa QckSgCChhSSaLSLArC apkas COL_RAT : 39- 56: cvnsm QckSrCCqhDTiLGIArC thkam COL_SQUAC : 21- 38: cvgsf QckSsCCqrETgLSLArC a M 13: 35.8891 10( 10) S-x-C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 25- 39: saqck SnCCqhDTiLSLSrC alkar COLA_HORSE : 36- 50: saqck SeCChqESsLSLArC aakas COLB_HORSE : 38- 52: saqck SeCChrESsLSLArC aakas COL_CANFA : 42- 56: svqck SkCChrATgLSLArC apkas COL_CHICK : 20- 34: saqck SeCCqeDSgLSLAxC COL_HUMAN : 42- 56: saqck SnCCqhSSaLGLArC tsmas COL_MYOCO : 42- 56: saqck SqCCqhDSpLGLArC adkar COL_RABIT : 42- 56: saqck SgCChhSSaLSLArC apkas COL_RAT : 42- 56: smqck SrCCqhDTiLGIArC thkam COL_SQUAC : 24- 38: sfqck SsCCqrETgLSLArC a N 14: 31.7191 10( 10) C-C-x(2)-[ADES]-[ST]-x-L-[GS]-[IL]-[AS]-x-C Occurences: 10(10) COL2_PIG : 27- 39: qcksn CCqhDTiLSLSrC alkar COLA_HORSE : 38- 50: qckse CChqESsLSLArC aakas COLB_HORSE : 40- 52: qckse CChrESsLSLArC aakas COL_CANFA : 44- 56: qcksk CChrATgLSLArC apkas COL_CHICK : 22- 34: qckse CCqeDSgLSLAxC COL_HUMAN : 44- 56: qcksn CCqhSSaLGLArC tsmas COL_MYOCO : 44- 56: qcksq CCqhDSpLGLArC adkar COL_RABIT : 44- 56: qcksg CChhSSaLSLArC apkas COL_RAT : 44- 56: qcksr CCqhDTiLGIArC thkam COL_SQUAC : 26- 38: qckss CCqrETgLSLArC a O 15: 30.2571 12( 10) N-x-[DENS]-x-G-x(1,2)-C-x-[DGNQ]-[AS]-x-[QR]-[CS]-K Occurences: 12(10) COL2_PIG : 10- 24: rgiii NlDeGelClNSaQCK snccq COLA_HORSE : 21- 35: rgvii NlEaGeiClNSaQCK secch COLB_HORSE : 23- 37: rgvii NlEaGeiCmNSaQCK secch COL_CANFA : 98- 111: vgsit NtNfGv-ChDAgRSK k COL_CHICK : 5- 19: glif NlDtGelClQSaQCK seccq COL_HUMAN : 27- 41: rgiii NlEnGelCmNSaQCK snccq COL_HUMAN : 98- 111: vgsit NtNfGi-ChDAgRSK q COL_MYOCO : 27- 41: rglii NlDnGelClNSaQCK sqccq COL_RABIT : 27- 41: rgivi NlEeGelClNSaQCK sgcch COL_RAT : 27- 41: rglfi NlEdGeiCvNSmQCK srccq COL_RAT : 98- 111: igait NtNyGv-ClDStRSK q COL_SQUAC : 9- 23: rglfl NlSaGelCvGSfQCK ssccq P 16: 26.4147 15( 10) G-x-[FI]-x-N-x-[DENS]-x-G-x(1,2)-C-x-[DGNQ]-[ASV] Occurences: 15(10) COL2_PIG : 6- 20: vpdpr GiIiNlDeGelClNS aqcks COL2_PIG : 77- 90: dkslv GsItNtNfGi-ChNV grsds COLA_HORSE : 17- 31: vpdpr GvIiNlEaGeiClNS aqcks COLA_HORSE : 88- 101: dktlv GsImNtNfGi-CfDA arsee COLB_HORSE : 19- 33: vpdpr GvIiNlEaGeiCmNS aqcks COLB_HORSE : 90- 103: dktlv GsImNtNfGi-CfDA arsee COL_CANFA : 94- 107: dksiv GsItNtNfGv-ChDA grskk COL_CHICK : 1- 15: GlIfNlDtGelClQS aqcks COL_HUMAN : 23- 37: apgpr GiIiNlEnGelCmNS aqcks COL_HUMAN : 94- 107: dktiv GsItNtNfGi-ChDA grskq COL_MYOCO : 23- 37: apdpr GlIiNlDnGelClNS aqcks COL_RABIT : 94- 107: dksiv GsItNtNfGv-ClDV COL_RAT : 23- 37: vpgpr GlFiNlEdGeiCvNS mqcks COL_RAT : 94- 107: drsii GaItNtNyGv-ClDS trskq COL_SQUAC : 5- 19: aper GlFlNlSaGelCvGS fqcks Q 17: 24.2921 11( 10) C-x(1,2)-E-x(1,2)-G-L-[ST]-x-[ADEQ]-x-[CD] Occurences: 11(10) COL2_PIG : 61- 72: gvyyk CpcEr-GLTcEgD kslvg COLA_HORSE : 72- 83: gvyyk CpcEr-GLTcQvD ktlvg COLB_HORSE : 74- 85: gvyyk CpcEr-GLTcQvD ktlvg COL_CANFA : 78- 89: gvyyk CpcEr-GLTcEgD ksivg COL_CHICK : 22- 34: qckse CcqEdsGLSlAxC COL_CHICK : 23- 34: cksec Cq-EdsGLSlAxC COL_HUMAN : 78- 89: giyyk CpcEr-GLTcEgD ktivg COL_MYOCO : 78- 89: giyyl CpcEr-GLTcDgD ksiig COL_RABIT : 78- 89: gvyyk CpcEr-GLTcEgD ksivg COL_RAT : 78- 89: giyyr CpcEr-GLTcEgD rsiig COL_SQUAC : 27- 38: ckssc CqrEt-GLSlArC a R 18: 20.6220 10( 10) E-x(1,2)-G-L-[ST]-x-[ADEQ]-x-[CD] Occurences: 10(10) COL2_PIG : 64- 72: ykcpc Er-GLTcEgD kslvg COLA_HORSE : 75- 83: ykcpc Er-GLTcQvD ktlvg COLB_HORSE : 77- 85: ykcpc Er-GLTcQvD ktlvg COL_CANFA : 81- 89: ykcpc Er-GLTcEgD ksivg COL_CHICK : 25- 34: seccq EdsGLSlAxC COL_HUMAN : 81- 89: ykcpc Er-GLTcEgD ktivg COL_MYOCO : 81- 89: ylcpc Er-GLTcDgD ksiig COL_RABIT : 81- 89: ykcpc Er-GLTcEgD ksivg COL_RAT : 81- 89: yrcpc Er-GLTcEgD rsiig COL_SQUAC : 30- 38: sccqr Et-GLSlArC a S 19: 15.1631 13( 10) L-[GNS]-x-A-x-C Occurences: 13(10) COL2_PIG : 18- 23: egelc LNsAqC ksncc COLA_HORSE : 29- 34: ageic LNsAqC ksecc COLA_HORSE : 45- 50: hqess LSlArC aakas COLB_HORSE : 47- 52: hress LSlArC aakas COL_CANFA : 51- 56: hratg LSlArC apkas COL_CHICK : 29- 34: qedsg LSlAxC COL_HUMAN : 51- 56: qhssa LGlArC tsmas COL_MYOCO : 35- 40: ngelc LNsAqC ksqcc COL_MYOCO : 51- 56: qhdsp LGlArC adkar COL_RABIT : 35- 40: egelc LNsAqC ksgcc COL_RABIT : 51- 56: hhssa LSlArC apkas COL_RAT : 51- 56: qhdti LGiArC thkam COL_SQUAC : 33- 38: qretg LSlArC a T 20: 14.6810 20( 10) L-x(0,2)-A-[QR]-C Occurences: 20(10) COL2_PIG : 18- 23: egelc LnsAQC ksncc COLA_HORSE : 29- 34: ageic LnsAQC ksecc COLA_HORSE : 45- 50: hqess LslARC aakas COLA_HORSE : 47- 50: essls L--ARC aakas COLB_HORSE : 47- 52: hress LslARC aakas COLB_HORSE : 49- 52: essls L--ARC aakas COL_CANFA : 51- 56: hratg LslARC apkas COL_CANFA : 53- 56: atgls L--ARC apkas COL_CHICK : 13- 18: tgelc LqsAQC ksecc COL_HUMAN : 51- 56: qhssa LglARC tsmas COL_HUMAN : 53- 56: ssalg L--ARC tsmas COL_MYOCO : 35- 40: ngelc LnsAQC ksqcc COL_MYOCO : 51- 56: qhdsp LglARC adkar COL_MYOCO : 53- 56: dsplg L--ARC adkar COL_RABIT : 35- 40: egelc LnsAQC ksgcc COL_RABIT : 51- 56: hhssa LslARC apkas COL_RABIT : 53- 56: ssals L--ARC apkas COL_RAT : 51- 56: qhdti LgiARC thkam COL_SQUAC : 33- 38: qretg LslARC a COL_SQUAC : 35- 38: etgls L--ARC a Number of patterns evaluated by Pratt:610 Total running time: 0 seconds