------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file CLUSTERIN_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CLUSTERIN_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CLUS_BOVIN 439 CLUS_CANFA 445 CLUS_COTJA 449 CLUS_HUMAN 449 CLUS_MESAU 191 CLUS_MOUSE 448 CLUS_RAT 447 CLUS_SHEEP 66 Pratt run started at Thu Feb 6 19:08:25 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.1904 8( 8) P-x(2,3)-F-H-x(2)-F-Q-P-x(0,1)-F 2: 27.6904 13( 8) P-x(3,5)-P-x(2,3)-F-H-x(2)-F-Q-P 3: 27.1904 8( 8) M-x(3,5)-L-L-x(2)-L-N-x(0,2)-F-x(2)-V 4: 24.5203 8( 8) F-H-x(2)-F-Q-P-x(0,1)-F 5: 24.0203 8( 8) L-L-x(2)-L-N-x(0,2)-F-x(2)-V 6: 23.5203 9( 8) S-x(4,5)-M-x(3,5)-L-L-x(2)-L-N 7: 20.3503 8( 8) H-x(2)-F-Q-P-x(0,1)-F 8: 19.8503 8( 8) L-x(2)-L-N-x(0,2)-F-x(2)-V 9: 19.8503 8( 8) P-x(5)-P-x(1,3)-F-x(3)-F-x-P 10: 19.8503 8( 8) V-x(1,2)-E-x(1,2)-R-x(2)-S-x(5)-M 11: 16.1802 8( 8) F-Q-P-x(0,1)-F 12: 16.1802 11( 8) L-x(1,2)-F-x(5)-P-F 13: 16.1802 11( 8) L-E-x(1,2)-L-N 14: 16.1802 16( 8) L-x(0,1)-E-x-L-N 15: 16.1802 11( 8) E-x(1,2)-R-x(2)-S-x(5)-M 16: 16.1802 8( 8) E-x(2)-N-x(4,5)-V-x-Q 17: 16.1802 11( 8) V-x(2)-E-I-x(1,2)-N 18: 16.1802 11( 8) S-x(3)-L-x(1,2)-M-x(5)-K 19: 15.6802 8( 8) L-N-x(0,2)-F-x(2)-V 20: 15.6802 10( 8) E-x(2)-N-x(3,5)-V-x-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 56.3473 8( 8) V-x(1,2)-E-x(1,2)-R-[EHR]-[NQ]-S-[AST]-[GV]-x(3)-M-x(2)-[EPQ]-x(2)-[EK]-[CP]-x-[EN]-[FI]-x-[ADES]-V-x(2)-[PS] B 2: 52.6773 8( 8) E-x(1,2)-R-[EHR]-[NQ]-S-[AST]-[GV]-x(3)-M-x(2)-[EPQ]-x(2)-[EK]-[CP]-x-[EN]-[FI]-x-[ADES]-V-x(2)-[PS] C 3: 44.6668 9( 8) S-[ADGT]-x(2)-L-x(1,2)-M-x-[DGT]-[EQ]-[CG]-[DES]-K-x(2)-[EN]-x(4)-[DN]-[AC]-x(2)-[EGNT]-[DNV] D 4: 39.3940 8( 8) M-x(3,5)-L-L-[DEK]-[PQ]-L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] E 5: 37.8462 9( 8) S-x(4,5)-M-x(3,5)-L-L-[DEK]-[PQ]-L-N-x(3)-[GNSTV]-[FW]-x-[PS] F 6: 36.2240 8( 8) L-L-[DEK]-[PQ]-L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] G 7: 33.7957 13( 8) P-x(3,5)-P-x(2,3)-F-H-x-[LMV]-F-Q-P-[FL] H 8: 32.0539 8( 8) L-[DEK]-[PQ]-L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] I 9: 31.0276 8( 8) P-x(2,3)-F-H-x-[LMV]-F-Q-P-x(0,1)-F J 10: 28.9677 11( 8) V-[CN]-[KR]-E-I-x(1,2)-N-[AS]-x(3)-[LV] K 11: 28.8357 8( 8) M-x(3,5)-L-L-[DEK]-[PQ]-L-N-x(0,2)-F L 12: 27.3576 8( 8) F-H-x-[LMV]-F-Q-P-x(0,1)-F M 13: 26.0920 8( 8) E-x(2)-N-x(4,5)-V-x-Q-[ILM]-x(4)-[DEQ]-x-[DEGT]-[DNRS] N 14: 25.6656 8( 8) L-L-[DEK]-[PQ]-L-N-x(0,2)-F O 15: 25.2679 8( 8) P-x(5)-P-x(1,3)-F-[HR]-[ADEN]-x-F-x-P P 16: 23.1875 8( 8) H-x-[LMV]-F-Q-P-x(0,1)-F Q 17: 22.5860 10( 8) L-x(1,2)-F-x-[DN]-x(2)-[QS]-P-F R 18: 22.0685 8( 8) L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] S 19: 21.4956 8( 8) L-[DEK]-[PQ]-L-N-x(0,2)-F T 20: 19.6112 11( 8) L-E-x(1,2)-L-N-x(4)-[FW] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 56.3473 8( 8) V-x(1,2)-E-x(1,2)-R-[EHR]-[NQ]-S-[AST]-[GV]-x(3)-M-x(2)-[EPQ]-x(2)-[EK]-[CP]-x-[EN]-[FI]-x-[ADES]-V-x(2)-[PS] Occurences: 8(8) CLUS_BOVIN : 276- 306: nndrt VckEi-RHNSTGclrMkdQceKCqEIlEVdcS asnpt CLUS_CANFA : 280- 310: ednrt VckEi-RHNSTGclkMkdQceKCqEIlSVdcS snnpa CLUS_COTJA : 285- 315: stdrm VcrEi-RRNSAGclrMrdEceKCrEIlAVdcS qtdpv CLUS_HUMAN : 284- 314: dddrt VcrEi-RHNSTGclrMkdQcdKCrEIlSVdcS tnnps CLUS_MESAU : 72- 102: eddra VckEi-RHNSTGclkMkgQceKCqEIlSVdcS annpa CLUS_MOUSE : 283- 313: eddrt VckEi-RRNSTGclkMkgQceKCqEIlSVdcS tnnpa CLUS_RAT : 283- 313: eddpt VckEi-RHNSTGclkMkgQceKCqEIlSVdcS tnnpa CLUS_SHEEP : 34- 64: lqikl Vm-EqgREQSSVmnvMpfPllEPlNFhDVfqP fy B 2: 52.6773 8( 8) E-x(1,2)-R-[EHR]-[NQ]-S-[AST]-[GV]-x(3)-M-x(2)-[EPQ]-x(2)-[EK]-[CP]-x-[EN]-[FI]-x-[ADES]-V-x(2)-[PS] Occurences: 8(8) CLUS_BOVIN : 279- 306: rtvck Ei-RHNSTGclrMkdQceKCqEIlEVdcS asnpt CLUS_CANFA : 283- 310: rtvck Ei-RHNSTGclkMkdQceKCqEIlSVdcS snnpa CLUS_COTJA : 288- 315: rmvcr Ei-RRNSAGclrMrdEceKCrEIlAVdcS qtdpv CLUS_HUMAN : 287- 314: rtvcr Ei-RHNSTGclrMkdQcdKCrEIlSVdcS tnnps CLUS_MESAU : 75- 102: ravck Ei-RHNSTGclkMkgQceKCqEIlSVdcS annpa CLUS_MOUSE : 286- 313: rtvck Ei-RRNSTGclkMkgQceKCqEIlSVdcS tnnpa CLUS_RAT : 286- 313: ptvck Ei-RHNSTGclkMkgQceKCqEIlSVdcS tnnpa CLUS_SHEEP : 36- 64: iklvm EqgREQSSVmnvMpfPllEPlNFhDVfqP fy C 3: 44.6668 9( 8) S-[ADGT]-x(2)-L-x(1,2)-M-x-[DGT]-[EQ]-[CG]-[DES]-K-x(2)-[EN]-x(4)-[DN]-[AC]-x(2)-[EGNT]-[DNV] Occurences: 9(8) CLUS_BOVIN : 21- 47: sgwai SDkeLqeMsTEGSKyvNkeikNAlkEV kqikt CLUS_CANFA : 27- 53: gdqav SDteLqeMsTEGSKyiNkeikNAlkGV kqikt CLUS_CANFA : 288- 313: eirhn STgcLk-MkDQCEKcqEilsvDCssNN paqvq CLUS_COTJA : 293- 318: eirrn SAgcLr-MrDECEKcrEilavDCsqTD pvqsq CLUS_HUMAN : 292- 317: eirhn STgcLr-MkDQCDKcrEilsvDCstNN psqak CLUS_MESAU : 80- 105: eirhn STgcLk-MkGQCEKcqEilsvDCsaNN paqah CLUS_MOUSE : 291- 316: eirrn STgcLk-MkGQCEKcqEilsvDCstNN paqan CLUS_RAT : 291- 316: eirhn STgcLk-MkGQCEKcqEilsvDCstNN paqan CLUS_SHEEP : 2- 28: i SGkeLqeMsTEGSKyvNkeikNAlkEV lqikl D 4: 39.3940 8( 8) M-x(3,5)-L-L-[DEK]-[PQ]-L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] Occurences: 8(8) CLUS_BOVIN : 344- 364: syqqk MlntsaLLKQLNeqFtwVsQL anltq CLUS_CANFA : 348- 368: syqek MfntssLLKQLNeqFswVsQL anltq CLUS_COTJA : 353- 373: afqae MlntssLLDQLNrqFgwVsRL gnltq CLUS_HUMAN : 352- 372: syqwk MlntssLLEQLNeqFnwVsRL anltq CLUS_MESAU : 140- 160: slqtk MlntssLLEQLNeqFnwVsQL anltq CLUS_MOUSE : 351- 371: sfqsk MlntssLLEQLNdqFnwVsQL anltq CLUS_RAT : 351- 371: slqsk MlntssLLEQLNdqFtwVsQL anltq CLUS_SHEEP : 48- 64: svmnv Mpfp--LLEPLN--FhdVfQP fy E 5: 37.8462 9( 8) S-x(4,5)-M-x(3,5)-L-L-[DEK]-[PQ]-L-N-x(3)-[GNSTV]-[FW]-x-[PS] Occurences: 9(8) CLUS_BOVIN : 339- 362: dqllq Syqqk-MlntsaLLKQLNeqfTWvS qlanl CLUS_CANFA : 343- 366: dellq Syqek-MfntssLLKQLNeqfSWvS qlanl CLUS_COTJA : 347- 371: yddll SafqaeMlntssLLDQLNrqfGWvS rlgnl CLUS_HUMAN : 347- 370: nellk Syqwk-MlntssLLEQLNeqfNWvS rlanl CLUS_MESAU : 135- 158: nellh Slqtk-MlntssLLEQLNeqfNWvS qlanl CLUS_MOUSE : 346- 369: kellq Sfqsk-MlntssLLEQLNdqfNWvS qlanl CLUS_RAT : 346- 369: nellh Slqsk-MlntssLLEQLNdqfTWvS qlanl CLUS_SHEEP : 42- 64: qgreq SsvmnvMpfp--LLEPLNfhdVFqP fy CLUS_SHEEP : 43- 64: greqs Svmnv-Mpfp--LLEPLNfhdVFqP fy F 6: 36.2240 8( 8) L-L-[DEK]-[PQ]-L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] Occurences: 8(8) CLUS_BOVIN : 350- 364: lntsa LLKQLNeqFtwVsQL anltq CLUS_CANFA : 354- 368: fntss LLKQLNeqFswVsQL anltq CLUS_COTJA : 359- 373: lntss LLDQLNrqFgwVsRL gnltq CLUS_HUMAN : 358- 372: lntss LLEQLNeqFnwVsRL anltq CLUS_MESAU : 146- 160: lntss LLEQLNeqFnwVsQL anltq CLUS_MOUSE : 357- 371: lntss LLEQLNdqFnwVsQL anltq CLUS_RAT : 357- 371: lntss LLEQLNdqFtwVsQL anltq CLUS_SHEEP : 52- 64: vmpfp LLEPLN--FhdVfQP fy G 7: 33.7957 13( 8) P-x(3,5)-P-x(2,3)-F-H-x-[LMV]-F-Q-P-[FL] Occurences: 13(8) CLUS_BOVIN : 225- 241: arnvm PfpllePfn-FHdVFQPF ydmih CLUS_BOVIN : 227- 241: nvmpf Plle--Pfn-FHdVFQPF ydmih CLUS_CANFA : 230- 246: arnii PfprfqPln-FHdMFQPF fdmih CLUS_CANFA : 232- 246: niipf Prfq--Pln-FHdMFQPF fdmih CLUS_COTJA : 234- 250: srelh Pffqh-PmhgFHrLFQPL femtq CLUS_HUMAN : 231- 247: vrslm PfspyePln-FHaMFQPF lemih CLUS_MESAU : 19- 35: irsll PpphygPls-FHdMFQPF lemih CLUS_MESAU : 20- 35: rsllp Pphyg-Pls-FHdMFQPF lemih CLUS_MESAU : 21- 35: sllpp Phyg--Pls-FHdMFQPF lemih CLUS_MOUSE : 231- 246: rslms Pshyg-Pps-FHnMFQPF femih CLUS_RAT : 230- 246: vrslm PlshygPls-FHnMFQPF fdmih CLUS_SHEEP : 49- 65: vmnvm PfpllePln-FHdVFQPF y CLUS_SHEEP : 51- 65: nvmpf Plle--Pln-FHdVFQPF y H 8: 32.0539 8( 8) L-[DEK]-[PQ]-L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] Occurences: 8(8) CLUS_BOVIN : 351- 364: ntsal LKQLNeqFtwVsQL anltq CLUS_CANFA : 355- 368: ntssl LKQLNeqFswVsQL anltq CLUS_COTJA : 360- 373: ntssl LDQLNrqFgwVsRL gnltq CLUS_HUMAN : 359- 372: ntssl LEQLNeqFnwVsRL anltq CLUS_MESAU : 147- 160: ntssl LEQLNeqFnwVsQL anltq CLUS_MOUSE : 358- 371: ntssl LEQLNdqFnwVsQL anltq CLUS_RAT : 358- 371: ntssl LEQLNdqFtwVsQL anltq CLUS_SHEEP : 53- 64: mpfpl LEPLN--FhdVfQP fy I 9: 31.0276 8( 8) P-x(2,3)-F-H-x-[LMV]-F-Q-P-x(0,1)-F Occurences: 8(8) CLUS_BOVIN : 231- 241: fplle Pfn-FHdVFQP-F ydmih CLUS_CANFA : 236- 246: fprfq Pln-FHdMFQP-F fdmih CLUS_CANFA : 236- 247: fprfq Pln-FHdMFQPfF dmihq CLUS_COTJA : 239- 251: pffqh PmhgFHrLFQPlF emtqh CLUS_HUMAN : 237- 247: fspye Pln-FHaMFQP-F lemih CLUS_MESAU : 25- 35: pphyg Pls-FHdMFQP-F lemih CLUS_MOUSE : 236- 246: pshyg Pps-FHnMFQP-F femih CLUS_MOUSE : 236- 247: pshyg Pps-FHnMFQPfF emihq CLUS_RAT : 236- 246: lshyg Pls-FHnMFQP-F fdmih CLUS_RAT : 236- 247: lshyg Pls-FHnMFQPfF dmihq CLUS_SHEEP : 55- 65: fplle Pln-FHdVFQP-F y J 10: 28.9677 11( 8) V-[CN]-[KR]-E-I-x(1,2)-N-[AS]-x(3)-[LV] Occurences: 11(8) CLUS_BOVIN : 36- 47: egsky VNKEIk-NAlkeV kqikt CLUS_BOVIN : 276- 288: nndrt VCKEIrhNStgcL rmkdq CLUS_CANFA : 280- 292: ednrt VCKEIrhNStgcL kmkdq CLUS_COTJA : 285- 297: stdrm VCREIrrNSagcL rmrde CLUS_HUMAN : 42- 53: qgsky VNKEIq-NAvngV kqikt CLUS_HUMAN : 284- 296: dddrt VCREIrhNStgcL rmkdq CLUS_MESAU : 72- 84: eddra VCKEIrhNStgcL kmkgq CLUS_MOUSE : 283- 295: eddrt VCKEIrrNStgcL kmkgq CLUS_RAT : 41- 52: qgsry VNKEIq-NAvqgV khikt CLUS_RAT : 283- 295: eddpt VCKEIrhNStgcL kmkgq CLUS_SHEEP : 17- 28: egsky VNKEIk-NAlkeV lqikl K 11: 28.8357 8( 8) M-x(3,5)-L-L-[DEK]-[PQ]-L-N-x(0,2)-F Occurences: 8(8) CLUS_BOVIN : 344- 358: syqqk MlntsaLLKQLNeqF twvsq CLUS_CANFA : 348- 362: syqek MfntssLLKQLNeqF swvsq CLUS_COTJA : 353- 367: afqae MlntssLLDQLNrqF gwvsr CLUS_HUMAN : 352- 366: syqwk MlntssLLEQLNeqF nwvsr CLUS_MESAU : 140- 154: slqtk MlntssLLEQLNeqF nwvsq CLUS_MOUSE : 351- 365: sfqsk MlntssLLEQLNdqF nwvsq CLUS_RAT : 351- 365: slqsk MlntssLLEQLNdqF twvsq CLUS_SHEEP : 48- 58: svmnv Mpfp--LLEPLN--F hdvfq L 12: 27.3576 8( 8) F-H-x-[LMV]-F-Q-P-x(0,1)-F Occurences: 8(8) CLUS_BOVIN : 234- 241: lepfn FHdVFQP-F ydmih CLUS_CANFA : 239- 246: fqpln FHdMFQP-F fdmih CLUS_CANFA : 239- 247: fqpln FHdMFQPfF dmihq CLUS_COTJA : 243- 251: hpmhg FHrLFQPlF emtqh CLUS_HUMAN : 240- 247: yepln FHaMFQP-F lemih CLUS_MESAU : 28- 35: ygpls FHdMFQP-F lemih CLUS_MOUSE : 239- 246: ygpps FHnMFQP-F femih CLUS_MOUSE : 239- 247: ygpps FHnMFQPfF emihq CLUS_RAT : 239- 246: ygpls FHnMFQP-F fdmih CLUS_RAT : 239- 247: ygpls FHnMFQPfF dmihq CLUS_SHEEP : 58- 65: lepln FHdVFQP-F y M 13: 26.0920 8( 8) E-x(2)-N-x(4,5)-V-x-Q-[ILM]-x(4)-[DEQ]-x-[DEGT]-[DNRS] Occurences: 8(8) CLUS_BOVIN : 39- 58: kyvnk EikNalke-VkQIktqiEqTN eerkl CLUS_CANFA : 45- 64: kyink EikNalkg-VkQIktliEqTN eerks CLUS_COTJA : 41- 60: kyida EveNaing-VkQMktlmDkTS kehqa CLUS_HUMAN : 45- 64: kyvnk EiqNavng-VkQIktliEkTN eerkt CLUS_MESAU : 148- 168: tssll EqlNeqfnwVsQLanltQgED qyylr CLUS_MOUSE : 359- 379: tssll EqlNdqfnwVsQLanltQgED kyylr CLUS_RAT : 359- 379: tssll EqlNdqftwVsQLanltQgDD qylrv CLUS_SHEEP : 20- 39: kyvnk EikNalke-VlQIklvmEqGR eqssv N 14: 25.6656 8( 8) L-L-[DEK]-[PQ]-L-N-x(0,2)-F Occurences: 8(8) CLUS_BOVIN : 350- 358: lntsa LLKQLNeqF twvsq CLUS_CANFA : 354- 362: fntss LLKQLNeqF swvsq CLUS_COTJA : 359- 367: lntss LLDQLNrqF gwvsr CLUS_HUMAN : 358- 366: lntss LLEQLNeqF nwvsr CLUS_MESAU : 146- 154: lntss LLEQLNeqF nwvsq CLUS_MOUSE : 357- 365: lntss LLEQLNdqF nwvsq CLUS_RAT : 357- 365: lntss LLEQLNdqF twvsq CLUS_SHEEP : 52- 58: vmpfp LLEPLN--F hdvfq O 15: 25.2679 8( 8) P-x(5)-P-x(1,3)-F-[HR]-[ADEN]-x-F-x-P Occurences: 8(8) CLUS_BOVIN : 225- 240: arnvm PfpllePfn-FHDvFqP fydmi CLUS_CANFA : 230- 245: arnii PfprfqPln-FHDmFqP ffdmi CLUS_COTJA : 199- 215: ygpaf PffrtpPfggFREaFvP pvqrv CLUS_HUMAN : 231- 246: vrslm PfspyePln-FHAmFqP flemi CLUS_MESAU : 19- 34: irsll PpphygPls-FHDmFqP flemi CLUS_MOUSE : 231- 245: rslms PshygpPs--FHNmFqP ffemi CLUS_RAT : 230- 245: vrslm PlshygPls-FHNmFqP ffdmi CLUS_SHEEP : 49- 64: vmnvm PfpllePln-FHDvFqP fy P 16: 23.1875 8( 8) H-x-[LMV]-F-Q-P-x(0,1)-F Occurences: 8(8) CLUS_BOVIN : 235- 241: epfnf HdVFQP-F ydmih CLUS_CANFA : 240- 246: qplnf HdMFQP-F fdmih CLUS_CANFA : 240- 247: qplnf HdMFQPfF dmihq CLUS_COTJA : 244- 251: pmhgf HrLFQPlF emtqh CLUS_HUMAN : 241- 247: eplnf HaMFQP-F lemih CLUS_MESAU : 29- 35: gplsf HdMFQP-F lemih CLUS_MOUSE : 240- 246: gppsf HnMFQP-F femih CLUS_MOUSE : 240- 247: gppsf HnMFQPfF emihq CLUS_RAT : 240- 246: gplsf HnMFQP-F fdmih CLUS_RAT : 240- 247: gplsf HnMFQPfF dmihq CLUS_SHEEP : 59- 65: eplnf HdVFQP-F y Q 17: 22.5860 10( 8) L-x(1,2)-F-x-[DN]-x(2)-[QS]-P-F Occurences: 10(8) CLUS_BOVIN : 134- 144: lvghq LeeFlNqsSPF yfwin CLUS_CANFA : 140- 150: lvghq LeeFlNqsSPF yfwmn CLUS_CANFA : 237- 246: prfqp Ln-FhDmfQPF fdmih CLUS_COTJA : 136- 146: lvgrq LeeFlNrsSPF siwvn CLUS_HUMAN : 140- 150: lvgrq LeeFlNqsSPF yfwmn CLUS_MESAU : 26- 35: phygp Ls-FhDmfQPF lemih CLUS_MOUSE : 139- 149: lvgqq LeeFlNqsSPF yfwmn CLUS_RAT : 139- 149: lvgrq LeeFlNqsSPF yfwmn CLUS_RAT : 237- 246: shygp Ls-FhNmfQPF fdmih CLUS_SHEEP : 56- 65: pllep Ln-FhDvfQPF y R 18: 22.0685 8( 8) L-N-x(0,2)-F-x(2)-V-x-[QR]-[LP] Occurences: 8(8) CLUS_BOVIN : 354- 364: allkq LNeqFtwVsQL anltq CLUS_CANFA : 358- 368: sllkq LNeqFswVsQL anltq CLUS_COTJA : 363- 373: slldq LNrqFgwVsRL gnltq CLUS_HUMAN : 362- 372: slleq LNeqFnwVsRL anltq CLUS_MESAU : 150- 160: slleq LNeqFnwVsQL anltq CLUS_MOUSE : 361- 371: slleq LNdqFnwVsQL anltq CLUS_RAT : 361- 371: slleq LNdqFtwVsQL anltq CLUS_SHEEP : 56- 64: pllep LN--FhdVfQP fy S 19: 21.4956 8( 8) L-[DEK]-[PQ]-L-N-x(0,2)-F Occurences: 8(8) CLUS_BOVIN : 351- 358: ntsal LKQLNeqF twvsq CLUS_CANFA : 355- 362: ntssl LKQLNeqF swvsq CLUS_COTJA : 360- 367: ntssl LDQLNrqF gwvsr CLUS_HUMAN : 359- 366: ntssl LEQLNeqF nwvsr CLUS_MESAU : 147- 154: ntssl LEQLNeqF nwvsq CLUS_MOUSE : 358- 365: ntssl LEQLNdqF nwvsq CLUS_RAT : 358- 365: ntssl LEQLNdqF twvsq CLUS_SHEEP : 53- 58: mpfpl LEPLN--F hdvfq T 20: 19.6112 11( 8) L-E-x(1,2)-L-N-x(4)-[FW] Occurences: 11(8) CLUS_BOVIN : 134- 144: lvghq LEefLNqsspF yfwin CLUS_CANFA : 140- 150: lvghq LEefLNqsspF yfwmn CLUS_COTJA : 136- 146: lvgrq LEefLNrsspF siwvn CLUS_HUMAN : 140- 150: lvgrq LEefLNqsspF yfwmn CLUS_HUMAN : 359- 368: ntssl LEq-LNeqfnW vsrla CLUS_MESAU : 147- 156: ntssl LEq-LNeqfnW vsqla CLUS_MOUSE : 139- 149: lvgqq LEefLNqsspF yfwmn CLUS_MOUSE : 358- 367: ntssl LEq-LNdqfnW vsqla CLUS_RAT : 139- 149: lvgrq LEefLNqsspF yfwmn CLUS_RAT : 358- 367: ntssl LEq-LNdqftW vsqla CLUS_SHEEP : 53- 62: mpfpl LEp-LNfhdvF qpfy Number of patterns evaluated by Pratt:1926 Total running time: 1 seconds