------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file CLP_PROTEASE_SER PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CLP_PROTEASE_SER.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CLPP_BACSU 24 CLPP_CHLEU 1010 CLPP_CHLRE 524 CLPP_ECOLI 207 CLPP_EPIVI 196 CLPP_HAEIN 193 CLPP_MAIZE 216 CLPP_MARPO 203 CLPP_ORYSA 216 CLPP_PINCO 205 CLPP_PINTH 196 CLPP_STRSL 196 CLPP_TOBAC 196 CLPP_WHEAT 216 Pratt run started at Thu Feb 6 19:08:23 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.5102 15( 14) E-x(4)-I-x(1,3)-L 2: 11.5102 20( 14) T-x(2,3)-G-x(1,2)-A 3: 11.5102 18( 14) T-x(1,3)-G-x(2)-A 4: 11.0102 22( 14) Y-x(1,3)-R-x(0,1)-L 5: 11.0102 16( 14) A-x(3,5)-Y-x(1,2)-L 6: 11.0102 16( 14) I-x(4,5)-E-x(2,4)-R 7: 11.0102 14( 14) M-x(1,2)-I-x(2,4)-V 8: 10.5102 22( 14) G-x(1,3)-A-x(1,3)-D 9: 10.5102 19( 14) R-x(3,5)-A-x(3,5)-Y 10: 10.5102 17( 14) E-x(2,4)-R-x(1,3)-A 11: 10.5102 24( 14) I-x(0,2)-E-x(1,3)-T 12: 8.3401 28( 14) I-x-S 13: 8.3401 26( 14) D-x-Y 14: 8.3401 35( 14) E-R 15: 8.3401 28( 14) G-E 16: 8.3401 21( 14) G-x(2)-A 17: 8.3401 26( 14) Q-x(4)-E 18: 8.3401 26( 14) E-x-T 19: 8.3401 30( 14) E-x(3)-R 20: 8.3401 21( 14) I-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 19.6388 15( 14) T-x(2,3)-G-x(1,2)-A-x-[ADES]-[IM]-x-[AST] B 2: 17.1122 14( 14) D-[ILV]-Y-[NS]-x-[ILM] C 3: 16.3661 15( 14) T-x(1,3)-G-x(2)-A-x(2)-[AGIP]-x(3)-[ALV] D 4: 13.2102 15( 14) I-x(4,5)-E-x(2,4)-R-x(3)-[APST] E 5: 13.1961 14( 14) G-x(2)-A-x(2)-[AGIP]-x(3)-[ALV] F 6: 13.1631 16( 14) R-x(3,5)-A-x(3,5)-Y-[GNS] G 7: 12.4560 18( 14) E-R-[ADSTV]-x(4)-[AEQS] H 8: 11.5102 15( 14) E-x(4)-I-x(1,3)-L I 9: 11.0164 18( 14) I-x-S-x-[GIL] J 10: 11.0102 22( 14) Y-x(1,3)-R-x(0,1)-L K 11: 11.0102 16( 14) A-x(3,5)-Y-x(1,2)-L L 12: 11.0102 14( 14) M-x(1,2)-I-x(2,4)-V M 13: 10.9285 16( 14) Q-x(2)-[DNR]-x-E N 14: 10.9258 14( 14) E-x-T-x-[NQR] O 15: 10.5102 22( 14) G-x(1,3)-A-x(1,3)-D P 16: 10.5102 17( 14) E-x(2,4)-R-x(1,3)-A Q 17: 10.5102 24( 14) I-x(0,2)-E-x(1,3)-T R 18: 10.1952 17( 14) I-E-[DENQR] S 19: 8.3401 28( 14) G-E T 20: 8.3401 30( 14) E-x(3)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 19.6388 15( 14) T-x(2,3)-G-x(1,2)-A-x-[ADES]-[IM]-x-[AST] Occurences: 15(14) CLPP_BACSU : 11- 22: tvieq Tnr-GerAyDIyS rl CLPP_CHLEU : 957- 968: ltate TihyGl-AdEIaS nevmq CLPP_CHLRE : 469- 480: ltame TiyyGl-AdEIaT nevmh CLPP_ECOLI : 103- 114: kpdvs TicmGq-AaSMgA fllta CLPP_EPIVI : 93- 104: rpevh TicmGl-AaSMgS fllvg CLPP_HAEIN : 90- 101: kpdir TlciGq-AcSMgA fllag CLPP_MAIZE : 93- 104: tpdiy TiclGi-AaSMaS fillg CLPP_MARPO : 93- 104: vpdvh TicmGl-AaSMgS filtg CLPP_ORYSA : 93- 104: tpniy TtclGi-AaSMpS fillg CLPP_ORYSA : 94- 104: pniyt Tcl-Gi-AaSMpS fillg CLPP_PINCO : 93- 104: vpdvn TicmGv-AaSMgS filig CLPP_PINTH : 93- 104: vpdvh TicmGv-AaSMgS filig CLPP_STRSL : 88- 99: ksdvq TivmGm-AaSMgT viass CLPP_TOBAC : 93- 104: rpdvh TicmGl-AaSMgS filvg CLPP_WHEAT : 93- 104: tpdiy TrclGi-AaSMaS fillg B 2: 17.1122 14( 14) D-[ILV]-Y-[NS]-x-[ILM] Occurences: 14(14) CLPP_BACSU : 19- 24: geray DIYSrL CLPP_CHLEU : 22- 27: paqwt DIYNfI frrrm CLPP_CHLRE : 22- 27: paqwt DIYNfI frrrm CLPP_ECOLI : 32- 37: gersf DIYSrL lkerv CLPP_EPIVI : 22- 27: daswv DVYNrL yrerl CLPP_HAEIN : 19- 24: gersy DIYSrL lkerv CLPP_MAIZE : 22- 27: eatwv DLYNvM yrert CLPP_MARPO : 22- 27: davwi DVYNrL yrerl CLPP_ORYSA : 22- 27: eatwv DLYNvM yrert CLPP_PINCO : 22- 27: datwv DLYNrL yrerl CLPP_PINTH : 22- 27: datwv DLYNrL yrerl CLPP_STRSL : 17- 22: geasy DIYSrL lkdri CLPP_TOBAC : 22- 27: daswv DVYNrL yrerl CLPP_WHEAT : 22- 27: eatwv DLYNvM yrert C 3: 16.3661 15( 14) T-x(1,3)-G-x(2)-A-x(2)-[AGIP]-x(3)-[ALV] Occurences: 15(14) CLPP_BACSU : 11- 24: tvieq Tnr-GerAydIysrL CLPP_CHLEU : 411- 425: kagsl TlalGvaAsaAslaL aggti CLPP_CHLRE : 379- 393: kagsl TlalGvaAsaAslaL aggti CLPP_ECOLI : 103- 117: kpdvs TicmGqaAsmGaflL tagak CLPP_EPIVI : 93- 107: rpevh TicmGlaAsmGsflL vggei CLPP_HAEIN : 108- 120: llagg Ta--GkrAalPnarV mihqp CLPP_MAIZE : 93- 107: tpdiy TiclGiaAsmAsfiL lggep CLPP_MARPO : 93- 107: vpdvh TicmGlaAsmGsfiL tggei CLPP_ORYSA : 93- 107: tpniy TtclGiaAsmPsfiL lggep CLPP_ORYSA : 94- 107: pniyt Tcl-GiaAsmPsfiL lggep CLPP_PINCO : 93- 107: vpdvn TicmGvaAsmGsfiL iggem CLPP_PINTH : 93- 107: vpdvh TicmGvaAsmGsfiL iggem CLPP_STRSL : 88- 102: ksdvq TivmGmaAsmGtviA ssgtk CLPP_TOBAC : 93- 107: rpdvh TicmGlaAsmGsfiL vggei CLPP_WHEAT : 93- 107: tpdiy TrclGiaAsmAsfiL lggep D 4: 13.2102 15( 14) I-x(4,5)-E-x(2,4)-R-x(3)-[APST] Occurences: 15(14) CLPP_BACSU : 4- 17: mnl Iptvi-Eqtn-RgerA ydiys CLPP_CHLEU : 913- 928: gqasd IwidsqEimkiRldvA eiysl CLPP_CHLRE : 425- 440: gqasd IwidsqEimkiRldvA eiysl CLPP_ECOLI : 178- 190: qsleq Ierdt-Erd--RflsA peave CLPP_EPIVI : 141- 155: qtgef Ileae-EllklRetlT rvyvq CLPP_HAEIN : 4- 17: msv Ipmvv-Eqts-RgerS ydiys CLPP_MAIZE : 106- 119: smasf Illgg-Eptk-RiafP harim CLPP_MARPO : 106- 119: smgsf Iltgg-Eitk-RialP harvm CLPP_MARPO : 141- 155: qagec Imeae-EvlklRdciT kvyvq CLPP_ORYSA : 106- 119: smpsf Illgg-Eptk-RiafP harim CLPP_PINCO : 106- 119: smgsf Iligg-Empk-RialP harvm CLPP_PINTH : 106- 119: smgsf Iligg-Empk-RialP harim CLPP_STRSL : 2- 15: m Ipvvi-Eqts-RgeaS ydiys CLPP_TOBAC : 106- 119: smgsf Ilvgg-Eitk-RlafP harvm CLPP_WHEAT : 106- 119: smasf Illgg-Eptk-RiafP harim E 5: 13.1961 14( 14) G-x(2)-A-x(2)-[AGIP]-x(3)-[ALV] Occurences: 14(14) CLPP_BACSU : 14- 24: eqtnr GerAydIysrL CLPP_CHLEU : 415- 425: ltlal GvaAsaAslaL aggti CLPP_CHLRE : 383- 393: ltlal GvaAsaAslaL aggti CLPP_ECOLI : 107- 117: sticm GqaAsmGaflL tagak CLPP_EPIVI : 97- 107: hticm GlaAsmGsflL vggei CLPP_HAEIN : 110- 120: aggta GkrAalPnarV mihqp CLPP_MAIZE : 97- 107: yticl GiaAsmAsfiL lggep CLPP_MARPO : 97- 107: hticm GlaAsmGsfiL tggei CLPP_ORYSA : 97- 107: yttcl GiaAsmPsfiL lggep CLPP_PINCO : 97- 107: nticm GvaAsmGsfiL iggem CLPP_PINTH : 97- 107: hticm GvaAsmGsfiL iggem CLPP_STRSL : 92- 102: qtivm GmaAsmGtviA ssgtk CLPP_TOBAC : 97- 107: hticm GlaAsmGsfiL vggei CLPP_WHEAT : 97- 107: ytrcl GiaAsmAsfiL lggep F 6: 13.1631 16( 14) R-x(3,5)-A-x(3,5)-Y-[GNS] Occurences: 16(14) CLPP_BACSU : 13- 22: ieqtn Rger--Aydi--YS rl CLPP_CHLEU : 948- 961: lrdld RdfyltAtetihYG ladei CLPP_CHLRE : 220- 231: vyspf RllanfApqn--YN lehpn CLPP_CHLRE : 460- 473: lrdld RdfyltAmetiyYG ladei CLPP_ECOLI : 184- 197: erdte RdrflsApeaveYG lvdsi CLPP_ECOLI : 186- 197: dterd Rfls--ApeaveYG lvdsi CLPP_EPIVI : 175- 188: sedme RdvfmsAkdaqaYG ivdlv CLPP_HAEIN : 171- 184: ekdtd RdnfmsAeeaqaYG lvdev CLPP_MAIZE : 175- 188: sedme RdvfmsAdeakaYG lvdiv CLPP_MARPO : 175- 188: sedme RdvfmsAkeaklYG ivdlv CLPP_ORYSA : 175- 188: sedme RdvfmsAdeakaYG lvdiv CLPP_PINCO : 175- 188: qrdln RdvfmsAteaqaYG ivdvv CLPP_PINTH : 175- 188: qrdln RdvfmsAteaqaYG ivdvv CLPP_STRSL : 171- 184: hvdae RdnwmsAqetleYG fidei CLPP_TOBAC : 175- 188: sedme RdvfmsAteaqaYG ivdlv CLPP_WHEAT : 14- 25: pyrip Rdee--AtwvdlYN vmyre G 7: 12.4560 18( 14) E-R-[ADSTV]-x(4)-[AEQS] Occurences: 18(14) CLPP_BACSU : 15- 22: qtnrg ERAydiyS rl CLPP_CHLEU : 370- 377: rgkqa ERAfqeeE skkvf CLPP_CHLRE : 338- 345: yrkqt ERViqeeE skkvf CLPP_ECOLI : 28- 35: qtsrg ERSfdiyS rllke CLPP_ECOLI : 183- 190: ierdt ERDrflsA peave CLPP_EPIVI : 174- 181: isedm ERDvfmsA kdaqa CLPP_HAEIN : 15- 22: qtsrg ERSydiyS rllke CLPP_MAIZE : 30- 37: nvmyr ERTlflgQ eirce CLPP_MAIZE : 174- 181: vsedm ERDvfmsA deaka CLPP_MARPO : 174- 181: isedm ERDvfmsA keakl CLPP_ORYSA : 30- 37: nvmyr ERTlflgQ eirce CLPP_ORYSA : 174- 181: vsedm ERDvfmsA deaka CLPP_PINCO : 160- 167: tecyi ERTgqpeE viqrd CLPP_PINTH : 160- 167: trcyi ERTdqpgE viqrd CLPP_STRSL : 170- 177: vhvda ERDnwmsA qetle CLPP_TOBAC : 174- 181: vsedm ERDvfmsA teaqa CLPP_WHEAT : 30- 37: nvmyr ERTlflgQ eirce CLPP_WHEAT : 174- 181: vsedm ERDvfmsA deaka H 8: 11.5102 15( 14) E-x(4)-I-x(1,3)-L Occurences: 15(14) CLPP_BACSU : 15- 24: qtnrg EraydIysrL CLPP_CHLEU : 42- 50: qyldd ElcnqIcg-L linih CLPP_CHLEU : 42- 51: qyldd ElcnqIcglL inihm CLPP_CHLRE : 42- 50: qyldd ElcnqIcg-L linih CLPP_CHLRE : 42- 51: qyldd ElcnqIcglL inihm CLPP_CHLRE : 188- 196: fqnpa EmtklIkn-L knlkn CLPP_ECOLI : 28- 37: qtsrg ErsfdIysrL lkerv CLPP_EPIVI : 38- 47: lflgq EvdsdIsnqL iglmv CLPP_HAEIN : 15- 24: qtsrg ErsydIysrL lkerv CLPP_MAIZE : 42- 50: qeirc EitnhItg-L mvyls CLPP_MARPO : 111- 118: iltgg EitkrIa--L pharv CLPP_ORYSA : 42- 50: qeirc EvtnhItg-L mvyls CLPP_PINCO : 111- 118: iligg EmpkrIa--L pharv CLPP_PINTH : 111- 118: iligg EmpkrIa--L phari CLPP_STRSL : 13- 22: qtsrg EasydIysrL lkdri CLPP_TOBAC : 38- 47: lflgq EvdseIsnqL iglmv CLPP_WHEAT : 42- 50: qeirc EitnhItg-L mvyls I 9: 11.0164 18( 14) I-x-S-x-[GIL] Occurences: 18(14) CLPP_BACSU : 20- 24: erayd IySrL CLPP_CHLEU : 385- 389: kvfvi InSfG gsvgn CLPP_CHLRE : 242- 246: qnlae IySlL ktstq CLPP_CHLRE : 353- 357: kvfmi InSfG gsvgn CLPP_ECOLI : 33- 37: ersfd IySrL lkerv CLPP_ECOLI : 77- 81: diyly InSpG gvita CLPP_EPIVI : 67- 71: eiylf InSpG gwvip CLPP_HAEIN : 20- 24: ersyd IySrL lkerv CLPP_HAEIN : 64- 68: diniy InSpG gsvta CLPP_MAIZE : 67- 71: diflf InSlG gwlis CLPP_MARPO : 67- 71: dmyly InSpG gavla CLPP_ORYSA : 67- 71: diflf InSpG gwlis CLPP_PINCO : 63- 67: danke IfSfI ncpgg CLPP_PINTH : 63- 67: dsnkd IfSfI ncpgg CLPP_STRSL : 18- 22: easyd IySrL lkdri CLPP_STRSL : 101- 105: smgtv IaSsG tkgkr CLPP_TOBAC : 67- 71: dlylf InSpG gwvip CLPP_WHEAT : 67- 71: diflf InSpG gwlis J 10: 11.0102 22( 14) Y-x(1,3)-R-x(0,1)-L Occurences: 22(14) CLPP_BACSU : 21- 24: raydi Ys--R-L CLPP_CHLEU : 216- 222: nsldi YspfRmL anfea CLPP_CHLEU : 303- 309: nlrke YikdRtL nnyss CLPP_CHLRE : 216- 221: qnldv YspfR-L lanfa CLPP_CHLRE : 216- 222: qnldv YspfRlL anfap CLPP_CHLRE : 297- 302: rlkqr YvqeR-L gsggl CLPP_ECOLI : 34- 37: rsfdi Ys--R-L lkerv CLPP_ECOLI : 34- 38: rsfdi Ys--RlL kervi CLPP_EPIVI : 24- 27: swvdv Yn--R-L yrerl CLPP_EPIVI : 28- 32: vynrl Yre-R-L lflgq CLPP_EPIVI : 28- 33: vynrl Yre-RlL flgqe CLPP_HAEIN : 21- 24: rsydi Ys--R-L lkerv CLPP_HAEIN : 21- 25: rsydi Ys--RlL kervi CLPP_MAIZE : 28- 33: lynvm Yre-RtL flgqe CLPP_MARPO : 24- 27: vwidv Yn--R-L yrerl CLPP_MARPO : 28- 32: vynrl Yre-R-L lflgq CLPP_MARPO : 28- 33: vynrl Yre-RlL flgqq CLPP_ORYSA : 28- 33: lynvm Yre-RtL flgqe CLPP_PINCO : 24- 27: twvdl Yn--R-L yrerl CLPP_PINCO : 28- 32: lynrl Yre-R-L lflaq CLPP_PINCO : 28- 33: lynrl Yre-RlL flaqd CLPP_PINTH : 24- 27: twvdl Yn--R-L yrerl CLPP_PINTH : 28- 32: lynrl Yre-R-L lflaq CLPP_PINTH : 28- 33: lynrl Yre-RlL flaqd CLPP_STRSL : 19- 22: asydi Ys--R-L lkdri CLPP_STRSL : 19- 23: asydi Ys--RlL kdrii CLPP_TOBAC : 24- 27: swvdv Yn--R-L yrerl CLPP_TOBAC : 28- 32: vynrl Yre-R-L lflgq CLPP_TOBAC : 28- 33: vynrl Yre-RlL flgqe CLPP_WHEAT : 28- 33: lynvm Yre-RtL flgqe CLPP_WHEAT : 92- 96: vtpdi Yt--RcL giaas K 11: 11.0102 16( 14) A-x(3,5)-Y-x(1,2)-L Occurences: 16(14) CLPP_BACSU : 17- 24: nrger Aydi--YsrL CLPP_CHLEU : 954- 962: dfylt AtetihYg-L adeia CLPP_CHLRE : 226- 232: llanf Apqn--Yn-L ehpnq CLPP_CHLRE : 312- 319: lsnsk Alka--YnyL dqgal CLPP_CHLRE : 466- 474: dfylt AmetiyYg-L adeia CLPP_CHLRE : 466- 474: dfylt Ameti-YygL adeia CLPP_ECOLI : 190- 198: drfls ApeaveYg-L vdsil CLPP_EPIVI : 18- 27: pgeed AswvdvYnrL yrerl CLPP_HAEIN : 177- 185: dnfms AeeaqaYg-L vdevl CLPP_MAIZE : 181- 189: dvfms AdeakaYg-L vdivg CLPP_MARPO : 18- 27: pgeed AvwidvYnrL yrerl CLPP_ORYSA : 181- 189: dvfms AdeakaYg-L vdivg CLPP_PINCO : 18- 27: pgded AtwvdlYnrL yrerl CLPP_PINTH : 18- 27: pgded AtwvdlYnrL yrerl CLPP_STRSL : 14- 22: tsrge Asydi-YsrL lkdri CLPP_TOBAC : 18- 27: pgeed AswvdvYnrL yrerl CLPP_WHEAT : 181- 189: dvfms AdeakaYe-L vdivg L 12: 11.0102 14( 14) M-x(1,2)-I-x(2,4)-V Occurences: 14(14) CLPP_BACSU : 1- 7: MnlIpt--V ieqtn CLPP_CHLEU : 921- 927: dsqei Mk-Irld-V aeiys CLPP_CHLRE : 433- 439: dsqei Mk-Irld-V aeiys CLPP_ECOLI : 94- 101: siydt MqfIkpd-V sticm CLPP_EPIVI : 1- 8: Mp-IgvpkV pfqip CLPP_HAEIN : 1- 7: MsvIpm--V veqts CLPP_HAEIN : 1- 8: MsvIpmv-V eqtsr CLPP_MAIZE : 1- 8: Mp-IgvpkV pyrip CLPP_MARPO : 1- 8: Mp-IgvpkV pfrlp CLPP_ORYSA : 1- 8: Mp-IgvpkV pyrip CLPP_PINCO : 84- 91: glyrm MqaIvpd-V nticm CLPP_PINTH : 84- 91: glfdm MqaIvpd-V hticm CLPP_STRSL : 79- 86: aivdt MnfIksd-V qtivm CLPP_TOBAC : 1- 8: Mp-IgvpkV pfrsp CLPP_WHEAT : 1- 8: Mp-IgvpkV pyrip M 13: 10.9285 16( 14) Q-x(2)-[DNR]-x-E Occurences: 16(14) CLPP_BACSU : 10- 15: ptvie QtnRgE raydi CLPP_CHLEU : 37- 42: mvflm QylDdE lcnqi CLPP_CHLRE : 37- 42: mvflm QylDdE lcnqi CLPP_CHLRE : 228- 233: anfap QnyNlE hpnqn CLPP_ECOLI : 23- 28: pmvie QtsRgE rsfdi CLPP_ECOLI : 145- 150: ggyqg QatDiE ihare CLPP_EPIVI : 85- 90: iydtm QfvRpE vhtic CLPP_HAEIN : 10- 15: pmvve QtsRgE rsydi CLPP_MAIZE : 37- 42: tlflg QeiRcE itnhi CLPP_MARPO : 37- 42: llflg QqvDdE ianql CLPP_ORYSA : 37- 42: tlflg QeiRcE vtnhi CLPP_PINCO : 37- 42: llfla QdiNnE ianql CLPP_PINTH : 37- 42: llfla QdiNhE ianql CLPP_STRSL : 8- 13: pvvie QtsRgE asydi CLPP_TOBAC : 37- 42: llflg QevDsE isnql CLPP_WHEAT : 37- 42: tlflg QeiRcE itnhi N 14: 10.9258 14( 14) E-x-T-x-[NQR] Occurences: 14(14) CLPP_BACSU : 9- 13: iptvi EqTnR geray CLPP_CHLEU : 633- 637: vcdii EqTlN klgfn CLPP_CHLRE : 489- 493: mhsiv EmTnQ vwsyh CLPP_ECOLI : 22- 26: vpmvi EqTsR gersf CLPP_EPIVI : 111- 115: llvgg EiTkR lafph CLPP_HAEIN : 9- 13: ipmvv EqTsR gersy CLPP_MAIZE : 111- 115: illgg EpTkR iafph CLPP_MARPO : 111- 115: iltgg EiTkR ialph CLPP_ORYSA : 111- 115: illgg EpTkR iafph CLPP_PINCO : 160- 164: tecyi ErTgQ peevi CLPP_PINTH : 160- 164: trcyi ErTdQ pgevi CLPP_STRSL : 7- 11: ipvvi EqTsR geasy CLPP_TOBAC : 111- 115: ilvgg EiTkR lafph CLPP_WHEAT : 111- 115: illgg EpTkR iafph O 15: 10.5102 22( 14) G-x(1,3)-A-x(1,3)-D Occurences: 22(14) CLPP_BACSU : 14- 19: eqtnr Ger-Ay--D iysrl CLPP_CHLEU : 908- 912: nssiq Gq--As--D iwids CLPP_CHLRE : 420- 424: eggln Gq--As--D iwids CLPP_ECOLI : 144- 148: lggyq Gq--At--D ieiha CLPP_EPIVI : 14- 22: pfqip GeedAswvD vynrl CLPP_EPIVI : 77- 82: gwvip Gv--Aiy-D tmqfv CLPP_HAEIN : 74- 79: gsvta Gm--Aiy-D tmqfi CLPP_HAEIN : 131- 135: lggfr Gq--As--D iqiha CLPP_MAIZE : 14- 22: pyrip GdeeAtwvD lynvm CLPP_MAIZE : 77- 82: gwlis Gm--Aif-D tmqtv CLPP_MARPO : 14- 22: pfrlp GeedAvwiD vynrl CLPP_ORYSA : 14- 22: pyrip GdeeAtwvD lynvm CLPP_ORYSA : 77- 82: gwlis Gm--Aif-D tmqtv CLPP_PINCO : 14- 22: pfrap GdedAtwvD lynrl CLPP_PINCO : 135- 139: ssyyd Gs--Aa--D fhnes CLPP_PINTH : 14- 22: pfrap GdedAtwvD lynrl CLPP_PINTH : 135- 139: ssyyd Gs--Aa--D fhnes CLPP_STRSL : 12- 17: eqtsr Ge--Asy-D iysrl CLPP_STRSL : 72- 77: gsvsa Gl--Aiv-D tmnfi CLPP_TOBAC : 14- 22: pfrsp GeedAswvD vynrl CLPP_TOBAC : 77- 82: gwvip Gv--Aiy-D tmqfv CLPP_WHEAT : 77- 82: gwlis Gm--Aif-D tmqtv P 16: 10.5102 17( 14) E-x(2,4)-R-x(1,3)-A Occurences: 17(14) CLPP_BACSU : 9- 17: iptvi Eqtn-RgerA ydiys CLPP_CHLEU : 919- 928: widsq EimkiRldvA eiysl CLPP_CHLRE : 431- 440: widsq EimkiRldvA eiysl CLPP_ECOLI : 183- 190: ierdt Erd--RflsA peave CLPP_EPIVI : 111- 117: llvgg Eitk-Rl--A fphar CLPP_HAEIN : 35- 41: iflsg Eved-Rm--A nliva CLPP_MAIZE : 111- 117: illgg Eptk-Ri--A fphar CLPP_MAIZE : 152- 159: lhkvr Emit-Rvy-A lrtgk CLPP_MARPO : 111- 117: iltgg Eitk-Ri--A lphar CLPP_ORYSA : 111- 117: illgg Eptk-Ri--A fphar CLPP_ORYSA : 152- 159: lhkvr Emit-Rvy-A lrtgk CLPP_PINCO : 111- 117: iligg Empk-Ri--A lphar CLPP_PINTH : 111- 117: iligg Empk-Ri--A lphar CLPP_STRSL : 7- 14: ipvvi Eqts-Rge-A sydiy CLPP_TOBAC : 111- 117: ilvgg Eitk-Rl--A fphar CLPP_WHEAT : 111- 117: illgg Eptk-Ri--A fphar CLPP_WHEAT : 152- 159: lhkvr Emit-Rvy-A vrtgk Q 17: 10.5102 24( 14) I-x(0,2)-E-x(1,3)-T Occurences: 24(14) CLPP_BACSU : 8- 11: liptv I--Eq--T nrger CLPP_CHLEU : 117- 122: dedlg Id-Enn-T leqyt CLPP_CHLEU : 430- 436: laggt Ig-EryvT egchv CLPP_CHLEU : 560- 566: tdyqf IlpEta-T ltght CLPP_CHLEU : 603- 607: ghttk Ia-Ek--T aennq CLPP_CHLEU : 631- 635: edvcd Ii-Eq--T lnklg CLPP_CHLEU : 632- 635: dvcdi I--Eq--T lnklg CLPP_CHLEU : 975- 979: evmqe Ii-Em--T skvwd CLPP_CHLEU : 976- 979: vmqei I--Em--T skvwd CLPP_CHLRE : 398- 404: laggt Ig-EryvT egcht CLPP_CHLRE : 487- 491: evmhs Iv-Em--T nqvws CLPP_ECOLI : 21- 24: lvpmv I--Eq--T srger CLPP_ECOLI : 178- 182: qsleq I--Erd-T erdrf CLPP_EPIVI : 56- 60: mvyls I--Edd-T keiyl CLPP_HAEIN : 165- 169: qgier I--Ekd-T drdnf CLPP_MAIZE : 39- 44: flgqe IrcEi--T nhitg CLPP_MAIZE : 198- 204: vgdem Id-EhcdT dpvwf CLPP_MARPO : 195- 200: vdlva I--EnnsT ikn CLPP_ORYSA : 39- 44: flgqe IrcEv--T nhitg CLPP_PINCO : 159- 162: itecy I--Er--T gqpee CLPP_PINTH : 159- 162: itrcy I--Er--T dqpge CLPP_STRSL : 6- 9: mipvv I--Eq--T srgea CLPP_TOBAC : 56- 60: mvyls I--Ede-T kdlyl CLPP_WHEAT : 39- 44: flgqe IrcEi--T nhitg R 18: 10.1952 17( 14) I-E-[DENQR] Occurences: 17(14) CLPP_BACSU : 8- 10: liptv IEQ tnrge CLPP_CHLEU : 68- 70: lekke IER sglfk CLPP_CHLEU : 632- 634: dvcdi IEQ tlnkl CLPP_CHLEU : 652- 654: gkdyt IEN kqlws CLPP_CHLRE : 115- 117: dndfg IEE nhlle CLPP_ECOLI : 21- 23: lvpmv IEQ tsrge CLPP_ECOLI : 178- 180: qsleq IER dterd CLPP_EPIVI : 56- 58: mvyls IED dtkei CLPP_HAEIN : 162- 164: htgqg IER iekdt CLPP_MAIZE : 56- 58: mvyls IED gnsdi CLPP_MARPO : 195- 197: vdlva IEN nstik CLPP_ORYSA : 56- 58: mvyls IED gssdi CLPP_PINCO : 159- 161: itecy IER tgqpe CLPP_PINTH : 159- 161: itrcy IER tdqpg CLPP_STRSL : 6- 8: mipvv IEQ tsrge CLPP_TOBAC : 56- 58: mvyls IED etkdl CLPP_WHEAT : 56- 58: mvyls IED gisdi S 19: 8.3401 28( 14) G-E Occurences: 28(14) CLPP_BACSU : 14- 15: eqtnr GE raydi CLPP_CHLEU : 13- 14: iiycw GE elpaq CLPP_CHLEU : 88- 89: ggtga GE tgass CLPP_CHLEU : 431- 432: aggti GE ryvte CLPP_CHLEU : 481- 482: ldnnt GE msyqn CLPP_CHLRE : 13- 14: iiycw GE elpaq CLPP_CHLRE : 399- 400: aggti GE ryvte CLPP_ECOLI : 5- 6: msys GE rdnfa CLPP_ECOLI : 27- 28: eqtsr GE rsfdi CLPP_EPIVI : 14- 15: pfqip GE edasw CLPP_EPIVI : 110- 111: fllvg GE itkrl CLPP_EPIVI : 138- 139: fgaqt GE filea CLPP_HAEIN : 14- 15: eqtsr GE rsydi CLPP_HAEIN : 34- 35: vifls GE vedrm CLPP_MAIZE : 110- 111: fillg GE ptkri CLPP_MARPO : 14- 15: pfrlp GE edavw CLPP_MARPO : 56- 57: mmyln GE deskd CLPP_MARPO : 110- 111: filtg GE itkri CLPP_MARPO : 138- 139: ydgqa GE cimea CLPP_ORYSA : 110- 111: fillg GE ptkri CLPP_PINCO : 110- 111: filig GE mpkri CLPP_PINTH : 110- 111: filig GE mpkri CLPP_PINTH : 166- 167: rtdqp GE viqrd CLPP_STRSL : 12- 13: eqtsr GE asydi CLPP_TOBAC : 14- 15: pfrsp GE edasw CLPP_TOBAC : 110- 111: filvg GE itkrl CLPP_TOBAC : 138- 139: yeaqt GE fvlea CLPP_WHEAT : 110- 111: fillg GE ptkri T 20: 8.3401 30( 14) E-x(3)-R Occurences: 30(14) CLPP_BACSU : 9- 13: iptvi EqtnR geray CLPP_CHLEU : 270- 274: skllt ElaqR nwenk CLPP_CHLRE : 269- 273: nlshk ElmnR lqspe CLPP_ECOLI : 22- 26: vpmvi EqtsR gersf CLPP_ECOLI : 150- 154: qatdi EihaR eilkv CLPP_ECOLI : 176- 180: tgqsl EqieR dterd CLPP_EPIVI : 111- 115: llvgg EitkR lafph CLPP_EPIVI : 152- 156: llklr EtltR vyvqr CLPP_EPIVI : 171- 175: lwvis EdmeR dvfms CLPP_HAEIN : 9- 13: ipmvv EqtsR gersy CLPP_HAEIN : 35- 39: iflsg EvedR manli CLPP_MAIZE : 111- 115: illgg EptkR iafph CLPP_MAIZE : 152- 156: lhkvr EmitR vyalr CLPP_MAIZE : 171- 175: fwvvs EdmeR dvfms CLPP_MARPO : 111- 115: iltgg EitkR ialph CLPP_MARPO : 171- 175: lwvis EdmeR dvfms CLPP_ORYSA : 111- 115: illgg EptkR iafph CLPP_ORYSA : 152- 156: lhkvr EmitR vyalr CLPP_ORYSA : 171- 175: fwvvs EdmeR dvfms CLPP_PINCO : 111- 115: iligg EmpkR ialph CLPP_PINCO : 167- 171: tgqpe EviqR dlnrd CLPP_PINTH : 111- 115: iligg EmpkR ialph CLPP_PINTH : 167- 171: tdqpg EviqR dlnrd CLPP_STRSL : 7- 11: ipvvi EqtsR geasy CLPP_TOBAC : 111- 115: ilvgg EitkR lafph CLPP_TOBAC : 152- 156: llklr EtltR vyvqr CLPP_TOBAC : 171- 175: lwvvs EdmeR dvfms CLPP_WHEAT : 111- 115: illgg EptkR iafph CLPP_WHEAT : 152- 156: lhkvr EmitR vyavr CLPP_WHEAT : 171- 175: fwvvs EdmeR dvfms Number of patterns evaluated by Pratt:179 Total running time: 0 seconds