------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file CLPAB_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CLPAB_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CLAA_LYCES 926 CLAB_LYCES 923 CLPA_BRANA 874 CLPA_ECOLI 758 CLPA_PEA 922 CLPA_RHOBL 793 CLPB_BACNO 860 CLPB_ECOLI 857 CLPB_HAEIN 856 CLP_TRYBB 868 ERD1_ARATH 945 EXP4_STRPN 93 H101_ARATH 911 H104_YEAST 908 HS98_NEUCR 29 HSP7_YEAST 811 MECB_BACSU 810 Pratt run started at Thu Feb 6 19:08:20 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 18( 17) D-x(5)-K-x(2)-L-x(2,3)-G 2: 15.6802 24( 17) L-x(0,1)-K-x(2,3)-L-x(4)-L 3: 12.0102 28( 17) L-x(2,3)-I-x(4)-L 4: 12.0102 43( 17) L-x(2,3)-G-x(5)-E 5: 12.0102 24( 17) K-x(2)-L-x(2,3)-G 6: 12.0102 28( 17) K-x(2,3)-L-x(4)-L 7: 12.0102 31( 17) K-x(1,2)-L-x(4)-L 8: 12.0102 38( 17) L-x(0,1)-K-x(2)-L 9: 12.0102 39( 17) L-x-K-x(1,2)-L 10: 12.0102 33( 17) N-x-L-x(3,4)-L 11: 12.0102 29( 17) A-x(0,1)-L-x(4)-L 12: 12.0102 33( 17) D-x(3,4)-L-x(5)-R 13: 11.5102 43( 17) A-x(0,1)-E-x(1,2)-R 14: 11.5102 37( 17) L-x(0,1)-A-x(2,3)-K 15: 11.5102 27( 17) G-x-T-x(0,2)-A 16: 11.5102 38( 17) G-x(1,2)-T-x(1,2)-A 17: 11.5102 36( 17) G-x(0,2)-T-x(3)-E 18: 11.5102 57( 17) G-x(2,3)-T-x(1,2)-A 19: 11.5102 35( 17) G-x(1,2)-T-x(0,1)-A 20: 11.5102 43( 17) I-x(3,4)-L-x(0,1)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 29.2101 17( 17) D-[AILV]-[AGST]-[DN]-x-[FILV]-K-[EP]-x-L-x(2,3)-G B 2: 20.5154 23( 17) L-x(0,1)-K-x(2,3)-L-x(4)-L-x(4)-[ASV]-[DGNT] C 3: 16.1471 29( 17) L-x(0,1)-K-[ADGPS]-x-L-x(2)-[GILV] D 4: 16.1024 19( 17) K-x(1,2)-L-[AGSV]-x(3)-L-x(3)-[AGILV] E 5: 14.5954 28( 17) N-x-L-x(3,4)-L-x(2)-[AGL] F 6: 13.9195 29( 17) D-x(3,4)-L-x-[DGNPS]-x(3)-R G 7: 13.4308 25( 17) L-x(2,3)-I-x(4)-L-[ADEGNST] H 8: 13.1400 28( 17) G-x(0,2)-T-x(2)-[ADNSTV]-E I 9: 12.0102 43( 17) L-x(2,3)-G-x(5)-E J 10: 12.0102 24( 17) K-x(2)-L-x(2,3)-G K 11: 12.0102 28( 17) K-x(2,3)-L-x(4)-L L 12: 12.0102 39( 17) L-x-K-x(1,2)-L M 13: 12.0102 29( 17) A-x(0,1)-L-x(4)-L N 14: 11.5102 24( 17) L-x(0,1)-K-x(2,3)-L O 15: 11.5102 43( 17) A-x(0,1)-E-x(1,2)-R P 16: 11.5102 37( 17) L-x(0,1)-A-x(2,3)-K Q 17: 11.5102 27( 17) G-x-T-x(0,2)-A R 18: 11.5102 38( 17) G-x(1,2)-T-x(1,2)-A S 19: 11.5102 36( 17) G-x(0,2)-T-x(3)-E T 20: 11.5102 57( 17) G-x(2,3)-T-x(1,2)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 29.2101 17( 17) D-[AILV]-[AGST]-[DN]-x-[FILV]-K-[EP]-x-L-x(2,3)-G Occurences: 17(17) CLAA_LYCES : 389- 401: aegai DAANiLKPaLar-G elqci CLAB_LYCES : 387- 399: aegai DAANiLKPaLar-G elqci CLPA_BRANA : 336- 348: aegai DAANiLKPaLar-G elqci CLPA_ECOLI : 302- 314: sggqv DAANlIKPlLss-G kirvi CLPA_PEA : 387- 399: aegai DAANiLKPaLar-G elqci CLPA_RHOBL : 332- 344: sggam DASNlLKPaLqg-G klrcm CLPB_BACNO : 298- 310: segsl DAGNmLKPaLar-G dlhci CLPB_ECOLI : 294- 306: adgam DAGNmLKPaLar-G elhcv CLPB_HAEIN : 294- 306: tdgam DAGNlLKPsLar-G elhcv CLP_TRYBB : 292- 304: sggsm DAANlLKPmLar-G elrti ERD1_ARATH : 408- 420: kgsgl DIANlLKPsLgr-G elqci EXP4_STRPN : 78- 91: nnirl DVTDkVKEkLvdlG yd H101_ARATH : 295- 307: tegsm DAANlFKPmLar-G qlrci H104_YEAST : 296- 308: gngkd DAANiLKPaLsr-G qlkvi HS98_NEUCR : 2- 14: m DAANlLKPmLar-G qlhxi HSP7_YEAST : 231- 243: tdgsm DASNiLKPkLar-G lacis MECB_BACSU : 295- 307: aegai DASNiLKPsLar-G elqci B 2: 20.5154 23( 17) L-x(0,1)-K-x(2,3)-L-x(4)-L-x(4)-[ASV]-[DGNT] Occurences: 23(17) CLAA_LYCES : 394- 409: daani L-Kpa-LargeLqcigAT tldey CLAB_LYCES : 392- 407: daani L-Kpa-LargeLqcigAT tldey CLPA_BRANA : 341- 356: daani L-Kpa-LargeLqcigAT tldey CLPA_ECOLI : 712- 727: viqdn L-Kkp-LanelLfgslVD ggqvt CLPA_PEA : 392- 407: daani L-Kpa-LargeLqcigAT tldey CLPA_RHOBL : 336- 352: mdasn LlKpa-LqggkLrcmgST tykef CLPA_RHOBL : 337- 352: dasnl L-Kpa-LqggkLrcmgST tykef CLPB_BACNO : 236- 252: avpes L-KgkrLlsldLaallAG tkyrg CLPB_BACNO : 303- 318: dagnm L-Kpa-LargdLhcigAT tldey CLPB_ECOLI : 299- 314: dagnm L-Kpa-LargeLhcvgAT tldey CLPB_HAEIN : 298- 314: mdagn LlKps-LargeLhcvgAT tldey CLPB_HAEIN : 299- 314: dagnl L-Kps-LargeLhcvgAT tldey CLP_TRYBB : 296- 312: mdaan LlKpm-LargeLrtigAT tleey CLP_TRYBB : 297- 312: daanl L-Kpm-LargeLrtigAT tleey ERD1_ARATH : 412- 428: ldian LlKps-LgrgeLqciaST tldef ERD1_ARATH : 413- 428: dianl L-Kps-LgrgeLqciaST tldef EXP4_STRPN : 50- 67: iefka LsKdnlLqiveLmladVN krlss H101_ARATH : 299- 315: mdaan LfKpm-LargqLrcigAT tleey H104_YEAST : 301- 316: daani L-Kpa-LsrgqLkvigAT tnney HS98_NEUCR : 6- 22: mdaan LlKpm-LargqLhxigAT tlaey HS98_NEUCR : 7- 22: daanl L-Kpm-LargqLhxigAT tlaey HSP7_YEAST : 169- 185: evpds L-KdkdLvaldLgsliAG akyrg MECB_BACSU : 300- 315: dasni L-Kps-LargeLqcigAT tldey C 3: 16.1471 29( 17) L-x(0,1)-K-[ADGPS]-x-L-x(2)-[GILV] Occurences: 29(17) CLAA_LYCES : 394- 401: daani L-KPaLarG elqci CLAB_LYCES : 392- 399: daani L-KPaLarG elqci CLPA_BRANA : 341- 348: daani L-KPaLarG elqci CLPA_ECOLI : 306- 314: vdaan LiKPlLssG kirvi CLPA_PEA : 392- 399: daani L-KPaLarG elqci CLPA_RHOBL : 336- 344: mdasn LlKPaLqgG klrcm CLPA_RHOBL : 337- 344: dasnl L-KPaLqgG klrcm CLPA_RHOBL : 755- 763: llfgk LtKGgLvkV gvkdd CLPB_BACNO : 263- 270: efeer L-KAvLdeI tkadg CLPB_BACNO : 303- 310: dagnm L-KPaLarG dlhci CLPB_ECOLI : 259- 266: efeer L-KGvLndL akqeg CLPB_ECOLI : 299- 306: dagnm L-KPaLarG elhcv CLPB_HAEIN : 259- 266: efeer L-KAvLneL skeeg CLPB_HAEIN : 298- 306: mdagn LlKPsLarG elhcv CLPB_HAEIN : 299- 306: dagnl L-KPsLarG elhcv CLP_TRYBB : 257- 264: efeer L-KSvLneV kessn CLP_TRYBB : 296- 304: mdaan LlKPmLarG elrti CLP_TRYBB : 297- 304: daanl L-KPmLarG elrti ERD1_ARATH : 412- 420: ldian LlKPsLgrG elqci ERD1_ARATH : 413- 420: dianl L-KPsLgrG elqci ERD1_ARATH : 853- 860: lmlqd L-KSrLvaL gvgle EXP4_STRPN : 50- 58: iefka LsKDnLlqI velml H101_ARATH : 260- 267: efeer L-KSvLkeV edaeg H101_ARATH : 299- 307: mdaan LfKPmLarG qlrci H104_YEAST : 301- 308: daani L-KPaLsrG qlkvi HS98_NEUCR : 6- 14: mdaan LlKPmLarG qlhxi HS98_NEUCR : 7- 14: daanl L-KPmLarG qlhxi HSP7_YEAST : 236- 243: dasni L-KPkLarG lacis MECB_BACSU : 300- 307: dasni L-KPsLarG elqci D 4: 16.1024 19( 17) K-x(1,2)-L-[AGSV]-x(3)-L-x(3)-[AGILV] Occurences: 19(17) CLAA_LYCES : 395- 407: aanil KpaLArgeLqciG attld CLAB_LYCES : 393- 405: aanil KpaLArgeLqciG attld CLPA_BRANA : 342- 354: aanil KpaLArgeLqciG attld CLPA_ECOLI : 713- 725: iqdnl KkpLAnelLfgsL vdggq CLPA_ECOLI : 714- 725: qdnlk Kp-LAnelLfgsL vdggq CLPA_PEA : 393- 405: aanil KpaLArgeLqciG attld CLPA_RHOBL : 743- 755: iqehi KkpLAeelLfgkL tkggl CLPA_RHOBL : 744- 755: qehik Kp-LAeelLfgkL tkggl CLPB_BACNO : 304- 316: agnml KpaLArgdLhciG attld CLPB_ECOLI : 300- 312: agnml KpaLArgeLhcvG attld CLPB_HAEIN : 300- 312: agnll KpsLArgeLhcvG attld CLP_TRYBB : 298- 310: aanll KpmLArgeLrtiG attle ERD1_ARATH : 414- 426: ianll KpsLGrgeLqciA sttld EXP4_STRPN : 48- 59: giief Ka-LSkdnLlqiV elmla H101_ARATH : 301- 313: aanlf KpmLArgqLrciG attle H104_YEAST : 302- 314: aanil KpaLSrgqLkviG attnn HS98_NEUCR : 8- 20: aanll KpmLArgqLhxiG attla HSP7_YEAST : 172- 183: dslkd Kd-LValdLgslI agaky MECB_BACSU : 301- 313: asnil KpsLArgeLqciG attld E 5: 14.5954 28( 17) N-x-L-x(3,4)-L-x(2)-[AGL] Occurences: 28(17) CLAA_LYCES : 392- 401: aidaa NiLkpa-LarG elqci CLAB_LYCES : 390- 399: aidaa NiLkpa-LarG elqci CLPA_BRANA : 339- 348: aidaa NiLkpa-LarG elqci CLPA_ECOLI : 718- 728: kkpla NeLlfgsLvdG gqvtv CLPA_PEA : 390- 399: aidaa NiLkpa-LarG elqci CLPA_RHOBL : 335- 344: amdas NlLkpa-LqgG klrcm CLPB_BACNO : 301- 310: sldag NmLkpa-LarG dlhci CLPB_BACNO : 693- 702: hsdvf NtLlqv-LdeG rltdg CLPB_BACNO : 831- 840: qnyie NpLaqa-LlaG qylpq CLPB_ECOLI : 297- 306: amdag NmLkpa-LarG elhcv CLPB_ECOLI : 688- 697: hpdvf NiLlqv-LddG rltdg CLPB_HAEIN : 62- 71: vallr NeLkte-LnkL pqvig CLPB_HAEIN : 297- 306: amdag NlLkps-LarG elhcv CLPB_HAEIN : 688- 697: hadvf NiLlqv-LddG rltdg CLPB_HAEIN : 826- 836: qqeie NsLaqqiLsgA llpgk CLP_TRYBB : 295- 304: smdaa NlLkpm-LarG elrti CLP_TRYBB : 686- 695: hpnvy NvLlqv-LddG rltds ERD1_ARATH : 220- 230: lganm NlLtaaaLtrL kgeia ERD1_ARATH : 411- 420: gldia NlLkps-LgrG elqci EXP4_STRPN : 54- 64: alskd NlLqiveLmlA dvnkr H101_ARATH : 231- 241: kgdvp NsLtdvrLisL dmgal H101_ARATH : 689- 698: hvavf NtLlqv-LddG rltdg H104_YEAST : 299- 308: kddaa NiLkpa-LsrG qlkvi HS98_NEUCR : 5- 14: mdaa NlLkpm-LarG qlhxi HSP7_YEAST : 234- 243: smdas NiLkpk-LarG lacis MECB_BACSU : 125- 134: aarvl NnLgvs-LnkA rqqvl MECB_BACSU : 298- 307: aidas NiLkps-LarG elqci MECB_BACSU : 628- 637: hpdvf NiLlqv-LedG rltds F 6: 13.9195 29( 17) D-x(3,4)-L-x-[DGNPS]-x(3)-R Occurences: 29(17) CLAA_LYCES : 389- 400: aegai DaaniLkPalaR gelqc CLAB_LYCES : 387- 398: aegai DaaniLkPalaR gelqc CLPA_BRANA : 336- 347: aegai DaaniLkPalaR gelqc CLPA_ECOLI : 249- 260: tiysl DigslLaGtkyR gdfek CLPA_ECOLI : 445- 455: svsqs Drdt-LkNlgdR lkmlv CLPA_ECOLI : 582- 592: llqvm Dngt-LtDnngR kadfr CLPA_PEA : 387- 398: aegai DaaniLkPalaR gelqc CLPA_RHOBL : 279- 290: tifsl DmgalLaGtryR gdfee CLPA_RHOBL : 612- 622: llqvm Dhgk-LtDhngR avdfr CLPB_BACNO : 245- 256: rllsl DlaalLaGtkyR gefee CLPB_BACNO : 298- 309: segsl DagnmLkPalaR gdlhc CLPB_BACNO : 349- 360: epsve DtiaiLrNlqeR yevhh CLPB_BACNO : 700- 710: llqvl Degr-LtDgqgR tvdfr CLPB_ECOLI : 294- 305: adgam DagnmLkPalaR gelhc CLPB_ECOLI : 345- 356: epsve DtiaiLrGlkeR yelhh CLPB_ECOLI : 695- 705: llqvl Ddgr-LtDgqgR tvdfr CLPB_HAEIN : 294- 305: tdgam DagnlLkPslaR gelhc CLPB_HAEIN : 345- 356: epsve DtiaiLrGlkeR yeihh CLPB_HAEIN : 695- 705: llqvl Ddgr-LtDgqgR tvdfr CLP_TRYBB : 292- 303: sggsm DaanlLkPmlaR gelrt CLP_TRYBB : 693- 703: llqvl Ddgr-LtDsrgR tvdfs ERD1_ARATH : 408- 419: kgsgl DianlLkPslgR gelqc EXP4_STRPN : 65- 76: elmla DvnkrLsSnniR ldvtd H101_ARATH : 696- 706: llqvl Ddgr-LtDgqgR tvdfr H104_YEAST : 296- 307: gngkd DaaniLkPalsR gqlkv HS98_NEUCR : 2- 13: m DaanlLkPmlaR gqlhx HSP7_YEAST : 231- 242: tdgsm DasniLkPklaR glaci HSP7_YEAST : 280- 291: epsvs DtisiLrGlkeR yevhh MECB_BACSU : 295- 306: aegai DasniLkPslaR gelqc G 7: 13.4308 25( 17) L-x(2,3)-I-x(4)-L-[ADEGNST] Occurences: 25(17) CLAA_LYCES : 403- 412: large Lqc-IgattLD eyrkh CLAA_LYCES : 809- 819: eflnr LsemIvfrqLT klevk CLAB_LYCES : 401- 410: large Lqc-IgattLD eyrkh CLAB_LYCES : 806- 816: eflnr LdemIvfrqLT klevk CLPA_BRANA : 350- 359: large Lqc-IgattLD eyrkh CLPA_BRANA : 753- 763: eflnr LdemIlfrqLT klevk CLPA_ECOLI : 644- 654: efrnr LdniIwfdhLS tdvih CLPA_PEA : 401- 410: large Lqc-IgattLD eyrkh CLPA_PEA : 806- 816: eflnr LdemIvfrqLT klevk CLPA_RHOBL : 674- 684: efrnr LdavIsfapLG reiil CLPB_BACNO : 312- 321: largd Lhc-IgattLD eyrqy CLPB_ECOLI : 415- 425: eeldr LdrrIiqlkLE qqalm CLPB_HAEIN : 415- 425: epldr LerrIiqlkLE qqalq CLP_TRYBB : 306- 315: large Lrt-IgattLE eyrty ERD1_ARATH : 422- 431: lgrge Lqc-IasttLD efrsq EXP4_STRPN : 55- 64: lskdn Llq-IvelmLA dvnkr H101_ARATH : 309- 318: largq Lrc-IgattLE eyrky H104_YEAST : 553- 562: etaar Ltg-IpvkkLS esene H104_YEAST : 828- 838: mgarp LnrlIqneiLN klalr HS98_NEUCR : 16- 25: largq Lhx-IgattLA eyrk HSP7_YEAST : 50- 60: rvank LlsdIktnaLN evais HSP7_YEAST : 51- 60: vankl Lsd-IktnaLN evais HSP7_YEAST : 244- 253: klarg Lac-IsattLD efkii HSP7_YEAST : 757- 767: ygarp LnrlIhrqiLN smatf MECB_BACSU : 309- 318: large Lqc-IgattLD eyrky H 8: 13.1400 28( 17) G-x(0,2)-T-x(2)-[ADNSTV]-E Occurences: 28(17) CLAA_LYCES : 307- 313: gepgv Gk-TaiAE glaqr CLAA_LYCES : 407- 413: elqci Ga-TtlDE yrkhi CLAB_LYCES : 305- 311: gepgv Gk-TaiAE glaqr CLAB_LYCES : 405- 411: elqci Ga-TtlDE yrkhi CLPA_BRANA : 254- 260: gepgv Gk-TaiAE glaqr CLPA_BRANA : 354- 360: elqci Ga-TtlDE yrkhi CLPA_ECOLI : 141- 146: nfish G--TrkDE ptqss CLPA_ECOLI : 219- 225: gesgv Gk-TaiAE glawr CLPA_PEA : 305- 311: gepgv Gk-TaiAE glaqr CLPA_PEA : 405- 411: elqci Ga-TtlDE yrkhi CLPA_RHOBL : 249- 255: gdpgv Gk-TaiAE glawk CLPA_RHOBL : 656- 663: rerrt GedTaaVE rtftp CLPB_BACNO : 215- 221: gepgv Gk-TaiVE glaqr CLPB_BACNO : 316- 322: dlhci Ga-TtlDE yrqym CLPB_ECOLI : 211- 217: gepgv Gk-TaiVE glaqr CLPB_ECOLI : 312- 318: elhcv Ga-TtlDE yrqyi CLPB_ECOLI : 471- 478: kasls GtqTikAE leqak CLPB_HAEIN : 211- 217: gepgv Gk-TaiVE glaqr CLPB_HAEIN : 312- 318: elhcv Ga-TtlDE yrqyi CLP_TRYBB : 209- 215: gepgv Gk-TaiAE giaqr ERD1_ARATH : 321- 327: geagv Gk-TaiAE glais EXP4_STRPN : 4- 9: sna G--TgkTE asvgf H101_ARATH : 212- 218: gepgv Gk-TavVE glaqr H104_YEAST : 314- 320: qlkvi Ga-TtnNE yrsiv HS98_NEUCR : 20- 26: qlhxi Ga-TtlAE yrk HSP7_YEAST : 428- 435: kcqre GvyTkaSE lrysr MECB_BACSU : 213- 219: gepgv Gk-TaiAE glaqq MECB_BACSU : 313- 319: elqci Ga-TtlDE yrkyi I 9: 12.0102 43( 17) L-x(2,3)-G-x(5)-E Occurences: 43(17) CLAA_LYCES : 200- 209: igseh Lll-GllregE gvaar CLAA_LYCES : 340- 350: tldmg LlvaGtkyrgE feerl CLAA_LYCES : 341- 350: ldmgl Lva-GtkyrgE feerl CLAA_LYCES : 403- 413: large LqciGattldE yrkhi CLAB_LYCES : 198- 207: igseh Lll-GllregE gvaar CLAB_LYCES : 338- 348: tldmg LlvaGtkyrgE feerl CLAB_LYCES : 339- 348: ldmgl Lva-GtkyrgE feerl CLAB_LYCES : 401- 411: large LqciGattldE yrkhi CLPA_BRANA : 148- 157: igseh Lll-GllregE gvaar CLPA_BRANA : 287- 297: tldmg LlaaGtkyrgE feerv CLPA_BRANA : 288- 297: ldmgl Laa-GtkyrgE feerv CLPA_BRANA : 350- 360: large LqciGattldE yrkhi CLPA_ECOLI : 459- 468: drlkm Lvf-GqdkaiE altea CLPA_PEA : 198- 207: igseh Lll-GllregE gvaar CLPA_PEA : 338- 348: tldmg LlvaGtkyrgE feerl CLPA_PEA : 339- 348: ldmgl Lva-GtkyrgE feerl CLPA_PEA : 401- 411: large LqciGattldE yrkhi CLPA_RHOBL : 346- 356: lqggk LrcmGsttykE frqhf CLPA_RHOBL : 489- 498: rtlkr Lvf-GqdkaiE alsas CLPB_BACNO : 249- 258: ldlaa Lla-GtkyrgE feerl CLPB_BACNO : 312- 322: largd LhciGattldE yrqym CLPB_ECOLI : 245- 254: ldmga Lva-GakyrgE feerl CLPB_ECOLI : 308- 318: large LhcvGattldE yrqyi CLPB_ECOLI : 501- 510: armse Lqy-GkipelE kqlea CLPB_ECOLI : 838- 847: ilsge Lvp-GkvirlE vnedr CLPB_HAEIN : 245- 254: ldmga Lia-GakyrgE feerl CLPB_HAEIN : 308- 318: large LhcvGattldE yrqyi CLPB_HAEIN : 501- 510: akmse Lqy-GripdlE kqleq CLP_TRYBB : 110- 119: iavdh Lli-GlfeckE veaim CLP_TRYBB : 141- 150: galle Lrk-GkkvtsE fqeen CLP_TRYBB : 243- 252: ldlga Lia-GsslrgE feerl CLP_TRYBB : 306- 316: large LrtiGattleE yrtyv ERD1_ARATH : 354- 364: sldig LlmaGakergE learv ERD1_ARATH : 355- 364: ldigl Lma-GakergE learv EXP4_STRPN : 26- 36: rtnsv LgelGnffspE fmnrf H101_ARATH : 246- 255: ldmga Lva-GakyrgE feerl H101_ARATH : 309- 319: largq LrciGattleE yrkyv H101_ARATH : 502- 511: araad Lry-GaiqevE saiaq H104_YEAST : 310- 320: lsrgq LkviGattnnE yrsiv HS98_NEUCR : 16- 26: largq LhxiGattlaE yrk HSP7_YEAST : 182- 191: ldlgs Lia-GakyrgE feerl HSP7_YEAST : 773- 782: smatf Llk-GqirngE tvrvv MECB_BACSU : 309- 319: large LqciGattldE yrkyi J 10: 12.0102 24( 17) K-x(2)-L-x(2,3)-G Occurences: 24(17) CLAA_LYCES : 395- 401: aanil KpaLar-G elqci CLAB_LYCES : 393- 399: aanil KpaLar-G elqci CLPA_BRANA : 342- 348: aanil KpaLar-G elqci CLPA_ECOLI : 308- 314: aanli KplLss-G kirvi CLPA_ECOLI : 739- 745: aldke KneLty-G fqsaq CLPA_PEA : 393- 399: aanil KpaLar-G elqci CLPA_RHOBL : 338- 344: asnll KpaLqg-G klrcm CLPA_RHOBL : 757- 764: fgklt KggLvkvG vkdda CLPB_BACNO : 304- 310: agnml KpaLar-G dlhci CLPB_ECOLI : 300- 306: agnml KpaLar-G elhcv CLPB_HAEIN : 300- 306: agnll KpsLar-G elhcv CLP_TRYBB : 298- 304: aanll KpmLar-G elrti ERD1_ARATH : 414- 420: ianll KpsLgr-G elqci ERD1_ARATH : 854- 861: mlqdl KsrLvalG vglev EXP4_STRPN : 84- 91: vtdkv KekLvdlG yd H101_ARATH : 301- 307: aanlf KpmLar-G qlrci H104_YEAST : 302- 308: aanil KpaLsr-G qlkvi H104_YEAST : 811- 818: ltqea KdfLakyG ysddm HS98_NEUCR : 8- 14: aanll KpmLar-G qlhxi HSP7_YEAST : 95- 102: nqqpe KpaLeqfG tnlkk HSP7_YEAST : 149- 155: ragvg KtaLid-G laqri HSP7_YEAST : 237- 243: asnil KpkLar-G lacis HSP7_YEAST : 740- 747: ltdea KdwLtdkG ydqly MECB_BACSU : 301- 307: asnil KpsLar-G elqci K 11: 12.0102 28( 17) K-x(2,3)-L-x(4)-L Occurences: 28(17) CLAA_LYCES : 332- 341: tiegk KvitLdmglL vagtk CLAA_LYCES : 395- 403: aanil Kpa-LargeL qciga CLAB_LYCES : 330- 339: tiegk KvitLdmglL vagtk CLAB_LYCES : 393- 401: aanil Kpa-LargeL qciga CLPA_BRANA : 279- 288: tsegk KvitLdmglL aagtk CLPA_BRANA : 342- 350: aanil Kpa-LargeL qciga CLPA_ECOLI : 713- 721: iqdnl Kkp-LanelL fgslv CLPA_PEA : 330- 339: tiegk KvitLdmglL vagtk CLPA_PEA : 393- 401: aanil Kpa-LargeL qciga CLPA_RHOBL : 338- 346: asnll Kpa-LqggkL rcmgs CLPA_RHOBL : 743- 751: iqehi Kkp-LaeelL fgklt CLPB_BACNO : 161- 170: eyaed KrgaLkkytL dvtqr CLPB_BACNO : 237- 246: vpesl KgkrLlsldL aalla CLPB_BACNO : 304- 312: agnml Kpa-LargdL hciga CLPB_ECOLI : 300- 308: agnml Kpa-LargeL hcvga CLPB_HAEIN : 300- 308: agnll Kps-LargeL hcvga CLP_TRYBB : 298- 306: aanll Kpm-LargeL rtiga ERD1_ARATH : 403- 412: vgrgn KgsgLdianL lkpsl ERD1_ARATH : 414- 422: ianll Kps-LgrgeL qcias EXP4_STRPN : 52- 61: fkals KdnlLqiveL mladv H101_ARATH : 301- 309: aanlf Kpm-LargqL rciga H104_YEAST : 242- 251: ilqga KlfsLdlaaL tagak H104_YEAST : 302- 310: aanil Kpa-LsrgqL kviga H104_YEAST : 380- 388: aaqla Kry-LpyrrL pdsal H104_YEAST : 482- 491: tqakk KldeLenkaL vaerr HS98_NEUCR : 8- 16: aanll Kpm-LargqL hxiga HSP7_YEAST : 170- 179: vpdsl KdkdLvaldL gslia MECB_BACSU : 301- 309: asnil Kps-LargeL qciga L 12: 12.0102 39( 17) L-x-K-x(1,2)-L Occurences: 39(17) CLAA_LYCES : 510- 514: eeare LeKe-L rqitk CLAA_LYCES : 655- 659: vgkse LaKs-L atyyf CLAB_LYCES : 508- 512: eeake LeKe-L rqitk CLAB_LYCES : 652- 656: vgkse LaKa-L aayyf CLPA_BRANA : 457- 461: eeare LeKe-L rqitk CLPA_BRANA : 600- 604: vgkse LaKa-L aayyf CLPA_ECOLI : 270- 274: krfka LlKq-L eqdtn CLPA_ECOLI : 306- 310: vdaan LiKp-L lssgk CLPA_ECOLI : 306- 311: vdaan LiKplL ssgki CLPA_ECOLI : 508- 512: evtvq LsKa-L giell CLPA_ECOLI : 712- 716: viqdn LkKp-L anell CLPA_PEA : 652- 656: vgkse LaKa-L aayyf CLPA_RHOBL : 77- 81: vdled LkKt-L tdfid CLPA_RHOBL : 336- 341: mdasn LlKpaL qggkl CLPA_RHOBL : 755- 760: llfgk LtKggL vkvgv CLPB_BACNO : 165- 170: dkrga LkKytL dvtqr CLPB_ECOLI : 509- 513: gkipe LeKq-L eaatq CLPB_ECOLI : 614- 618: vgkte LcKa-L anfmf CLPB_ECOLI : 782- 786: iqlkr LyKr-L eergy CLPB_HAEIN : 298- 303: mdagn LlKpsL argel CLPB_HAEIN : 444- 448: krlem LeKe-L aeker CLPB_HAEIN : 509- 513: gripd LeKq-L eqaet CLPB_HAEIN : 614- 618: vgkte LcKt-L akflf CLPB_HAEIN : 618- 622: elckt LaKf-L fdsed CLP_TRYBB : 296- 301: mdaan LlKpmL argel ERD1_ARATH : 412- 417: ldian LlKpsL grgel ERD1_ARATH : 673- 677: vgkte LtKa-L aanyf EXP4_STRPN : 50- 55: iefka LsKdnL lqive H101_ARATH : 299- 304: mdaan LfKpmL argql H101_ARATH : 615- 619: vgkte LaKa-L aeqlf H104_YEAST : 92- 96: tpsya LgKv-L qdaak H104_YEAST : 378- 383: vtaaq LaKryL pyrrl H104_YEAST : 837- 842: iqnei LnKlaL rilkn HS98_NEUCR : 6- 11: mdaan LlKpmL argql HSP7_YEAST : 196- 200: efeer LkKv-L eeidk HSP7_YEAST : 379- 383: errea LeKd-L emknd HSP7_YEAST : 550- 554: tgktk LtKa-L aeflf HSP7_YEAST : 706- 711: lvfnr LsKkvL rsivd MECB_BACSU : 714- 719: ivfhs LeKkhL teivs MECB_BACSU : 730- 734: lmsdq LtKr-L keqdl M 13: 12.0102 29( 17) A-x(0,1)-L-x(4)-L Occurences: 29(17) CLAA_LYCES : 397- 403: nilkp A-LargeL qciga CLAB_LYCES : 395- 401: nilkp A-LargeL qciga CLPA_BRANA : 344- 350: nilkp A-LargeL qciga CLPA_ECOLI : 304- 311: gqvda AnLikplL ssgki CLPA_ECOLI : 511- 517: vqlsk A-LgielL rfdms CLPA_PEA : 38- 44: vktmc A-LrtsgL rmsgf CLPA_PEA : 395- 401: nilkp A-LargeL qciga CLPA_RHOBL : 48- 55: rrhel AtLehllL alide CLPA_RHOBL : 340- 346: nllkp A-LqggkL rcmgs CLPA_RHOBL : 540- 547: akqla AtLgvelL rfdms CLPB_BACNO : 164- 170: edkrg A-LkkytL dvtqr CLPB_BACNO : 306- 312: nmlkp A-LargdL hciga CLPB_BACNO : 460- 467: qekey AdLeeiwL aekag CLPB_BACNO : 836- 843: nplaq AlLagqyL pqsti CLPB_ECOLI : 239- 245: grrvl A-LdmgaL vagak CLPB_ECOLI : 302- 308: nmlkp A-LargeL hcvga CLPB_HAEIN : 58- 64: sgvnv A-LlrneL kteln CLP_TRYBB : 294- 301: gsmda AnLlkpmL argel ERD1_ARATH : 410- 417: sgldi AnLlkpsL grgel ERD1_ARATH : 810- 816: ytgmk A-LvveeL knyfr EXP4_STRPN : 49- 55: iiefk A-LskdnL lqive H101_ARATH : 297- 304: gsmda AnLfkpmL argql H104_YEAST : 11- 17: qfter A-LtiltL aqkla H104_YEAST : 241- 248: iilqg AkLfsldL aalta H104_YEAST : 304- 310: nilkp A-LsrgqL kviga H104_YEAST : 376- 383: alvta AqLakryL pyrrl HS98_NEUCR : 4- 11: mda AnLlkpmL argql HSP7_YEAST : 176- 182: dkdlv A-LdlgsL iagak MECB_BACSU : 49- 55: giaak A-LqalgL gseki N 14: 11.5102 24( 17) L-x(0,1)-K-x(2,3)-L Occurences: 24(17) CLAA_LYCES : 394- 398: daani L-Kpa-L argel CLAB_LYCES : 392- 396: daani L-Kpa-L argel CLPA_BRANA : 341- 345: daani L-Kpa-L argel CLPA_ECOLI : 712- 716: viqdn L-Kkp-L anell CLPA_PEA : 392- 396: daani L-Kpa-L argel CLPA_RHOBL : 336- 341: mdasn LlKpa-L qggkl CLPA_RHOBL : 337- 341: dasnl L-Kpa-L qggkl CLPB_BACNO : 236- 241: avpes L-KgkrL lsldl CLPB_BACNO : 303- 307: dagnm L-Kpa-L argdl CLPB_ECOLI : 299- 303: dagnm L-Kpa-L argel CLPB_HAEIN : 298- 303: mdagn LlKps-L argel CLPB_HAEIN : 299- 303: dagnl L-Kps-L argel CLP_TRYBB : 296- 301: mdaan LlKpm-L argel CLP_TRYBB : 297- 301: daanl L-Kpm-L argel ERD1_ARATH : 412- 417: ldian LlKps-L grgel ERD1_ARATH : 413- 417: dianl L-Kps-L grgel EXP4_STRPN : 50- 56: iefka LsKdnlL qivel H101_ARATH : 299- 304: mdaan LfKpm-L argql H104_YEAST : 301- 305: daani L-Kpa-L srgql H104_YEAST : 378- 383: vtaaq LaKry-L pyrrl HS98_NEUCR : 6- 11: mdaan LlKpm-L argql HS98_NEUCR : 7- 11: daanl L-Kpm-L argql HSP7_YEAST : 169- 174: evpds L-KdkdL valdl MECB_BACSU : 300- 304: dasni L-Kps-L argel O 15: 11.5102 43( 17) A-x(0,1)-E-x(1,2)-R Occurences: 43(17) CLAA_LYCES : 108- 113: kviml AqEeaR rlghn CLAA_LYCES : 423- 427: iekdp AlEr-R fqpvk CLAA_LYCES : 533- 537: qdfek AgEl-R dremd CLAB_LYCES : 106- 111: kviml AqEeaR rlghn CLAB_LYCES : 421- 425: iekdp AlEr-R fqpvk CLAB_LYCES : 531- 535: qdfek AgEl-R dremd CLPA_BRANA : 56- 61: kviml AqEeaR rlghn CLPA_BRANA : 370- 374: iekdp AlEr-R fqpvk CLPA_ECOLI : 17- 21: mafar ArEh-R hefmt CLPA_ECOLI : 71- 76: tpvlp AsEeeR dtqpt CLPA_PEA : 106- 111: kviml AqEeaR rlghn CLPA_PEA : 531- 535: qdfek AgEl-R dkemd CLPA_PEA : 591- 596: vdkvs AdEsdR llkme CLPA_RHOBL : 223- 227: ligre A-EveR aiqvl CLPA_RHOBL : 476- 480: vskdd A-EtlR dlert CLPB_BACNO : 158- 162: vtdey A-EdkR galkk CLPB_BACNO : 332- 336: mekda AlEr-R fqkvi CLPB_ECOLI : 115- 119: lfvla AlEs-R gtvad CLPB_ECOLI : 139- 144: anitq AiEqmR ggesv CLPB_ECOLI : 154- 158: vndqg A-EdqR qalkk CLPB_ECOLI : 328- 332: iekda AlEr-R fqkvf CLPB_ECOLI : 485- 490: eqaki AiEqaR rvgdl CLPB_HAEIN : 115- 119: lflfa AlEe-R gtisd CLPB_HAEIN : 154- 158: vndqn AeEs-R qalek CLPB_HAEIN : 154- 158: vndqn A-EesR qalek CLPB_HAEIN : 328- 332: iekda AlEr-R fqkvf CLPB_HAEIN : 449- 453: lekel A-EkeR eyael CLP_TRYBB : 19- 24: talsd AvEsaR khnng CLP_TRYBB : 95- 99: aqhrr A-EanR vgdsl CLP_TRYBB : 326- 330: vekda AfEr-R fmpvy ERD1_ARATH : 117- 120: llgli A-Ed-R dpqgf ERD1_ARATH : 179- 184: rvfea AvEysR tmdcq EXP4_STRPN : 17- 21: vgfga ArEg-R tnsvl H101_ARATH : 329- 333: vekda AfEr-R fqqvy H101_ARATH : 490- 493: fslqe A-Er-R ydlar H104_YEAST : 144- 148: aikqq AlEl-R gntri H104_YEAST : 330- 334: vekdg AfEr-R fqkie H104_YEAST : 493- 496: nkalv A-Er-R ydtrt H104_YEAST : 525- 529: ledqv AeEe-R ragan H104_YEAST : 525- 529: ledqv A-EeeR ragan H104_YEAST : 525- 530: ledqv AeEerR agans HS98_NEUCR : 25- 28: gattl A-Ey-R k HSP7_YEAST : 433- 437: gvytk AsEl-R ysrip HSP7_YEAST : 727- 730: iqdrl A-Ek-R mkidl MECB_BACSU : 329- 333: iekda AlEr-R fqpiq MECB_BACSU : 662- 667: tsnvg AsElkR nkyvg P 16: 11.5102 37( 17) L-x(0,1)-A-x(2,3)-K Occurences: 37(17) CLAA_LYCES : 267- 272: tnltk L-AeegK ldpvv CLAA_LYCES : 341- 346: ldmgl LvAgt-K yrgef CLAA_LYCES : 886- 891: maekm L-AgeiK egdsv CLAB_LYCES : 265- 270: tnltk L-AeegK ldpvv CLAB_LYCES : 339- 344: ldmgl LvAgt-K yrgef CLAB_LYCES : 883- 888: maekm L-AneiK egdsv CLPA_BRANA : 214- 219: tnltk L-AeegK ldpvv CLPA_BRANA : 287- 293: tldmg LlAagtK yrgef CLPA_BRANA : 288- 293: ldmgl LaAgt-K yrgef CLPA_BRANA : 288- 293: ldmgl L-AagtK yrgef CLPA_BRANA : 830- 835: meekm L-AreiK egdsv CLPA_ECOLI : 253- 258: ldigs LlAgt-K yrgdf CLPA_ECOLI : 254- 258: digsl L-Agt-K yrgdf CLPA_PEA : 14- 19: lsvpg LvAgh-K dsqhk CLPA_PEA : 265- 270: tnltk L-AeegK ldpvv CLPA_PEA : 339- 344: ldmgl LvAgt-K yrgef CLPA_PEA : 883- 888: maekm L-AreiK egdsv CLPA_RHOBL : 297- 302: dfeer LkAvv-K eledh CLPA_RHOBL : 500- 505: kaiea LsAsi-K larag CLPB_BACNO : 24- 28: saaqs L-Avg-K dhayi CLPB_BACNO : 249- 254: ldlaa LlAgt-K yrgef CLPB_BACNO : 250- 254: dlaal L-Agt-K yrgef CLPB_ECOLI : 245- 250: ldmga LvAga-K yrgef CLPB_HAEIN : 20- 24: serqs L-Aig-K dnqfi CLPB_HAEIN : 245- 250: ldmga LiAga-K yrgef CLP_TRYBB : 169- 174: tdlck L-AeegK ldpvi ERD1_ARATH : 355- 360: ldigl LmAga-K ergel ERD1_ARATH : 782- 786: snvgs L-Aia-K grhgs ERD1_ARATH : 905- 910: lseaf L-AgsfK pgdta EXP4_STRPN : 63- 68: ivelm L-AdvnK rlssn H101_ARATH : 246- 251: ldmga LvAga-K yrgef H104_YEAST : 200- 205: stirv L-ArriK snpcl H104_YEAST : 251- 256: ldlaa LtAga-K ykgdf H104_YEAST : 447- 451: krklk L-Arq-K easlq HS98_NEUCR : 24- 29: igatt L-AeyrK HSP7_YEAST : 108- 113: tnlkk L-ArdgK ldpvi HSP7_YEAST : 182- 187: ldlgs LiAga-K yrgef MECB_BACSU : 170- 175: slard LtAia-K edsld Q 17: 11.5102 27( 17) G-x-T-x(0,2)-A Occurences: 27(17) CLAA_LYCES : 307- 310: gepgv GkT--A iaegl CLAA_LYCES : 307- 312: gepgv GkTaiA eglaq CLAB_LYCES : 27- 32: kfngs GkTkrA vtmlc CLAB_LYCES : 305- 308: gepgv GkT--A iaegl CLAB_LYCES : 305- 310: gepgv GkTaiA eglaq CLPA_BRANA : 254- 257: gepgv GkT--A iaegl CLPA_BRANA : 254- 259: gepgv GkTaiA eglaq CLPA_ECOLI : 219- 222: gesgv GkT--A iaegl CLPA_ECOLI : 219- 224: gesgv GkTaiA eglaw CLPA_PEA : 305- 308: gepgv GkT--A iaegl CLPA_PEA : 305- 310: gepgv GkTaiA eglaq CLPA_RHOBL : 249- 252: gdpgv GkT--A iaegl CLPA_RHOBL : 249- 254: gdpgv GkTaiA eglaw CLPA_RHOBL : 530- 535: gptgv GkTevA kqlaa CLPB_BACNO : 215- 218: gepgv GkT--A ivegl CLPB_ECOLI : 130- 134: ilkaa GaTt-A nitqa CLPB_ECOLI : 211- 214: gepgv GkT--A ivegl CLPB_HAEIN : 211- 214: gepgv GkT--A ivegl CLPB_HAEIN : 287- 292: tmvga GkTdgA mdagn CLP_TRYBB : 209- 212: gepgv GkT--A iaegi CLP_TRYBB : 209- 214: gepgv GkTaiA egiaq ERD1_ARATH : 321- 324: geagv GkT--A iaegl ERD1_ARATH : 321- 326: geagv GkTaiA eglai ERD1_ARATH : 912- 915: gsfkp GdT--A fvvld EXP4_STRPN : 6- 10: snagt GkTe-A svgfg H101_ARATH : 104- 109: aqksr GdThlA vdqli H101_ARATH : 212- 215: gepgv GkT--A vvegl H101_ARATH : 611- 616: gptgv GkTelA kalae H104_YEAST : 217- 220: gepgi GkT--A iiegv H104_YEAST : 619- 624: glsgs GkTelA kkvag H104_YEAST : 657- 660: vskll GtT--A gyvgy HS98_NEUCR : 20- 25: qlhxi GaTtlA eyrk HSP7_YEAST : 148- 151: gragv GkT--A lidgl MECB_BACSU : 213- 216: gepgv GkT--A iaegl MECB_BACSU : 213- 218: gepgv GkTaiA eglaq MECB_BACSU : 550- 555: gptgv GkTelA ralae R 18: 11.5102 38( 17) G-x(1,2)-T-x(1,2)-A Occurences: 38(17) CLAA_LYCES : 131- 137: llgli GegTgiA akvlk CLAA_LYCES : 307- 312: gepgv Gk-TaiA eglaq CLAA_LYCES : 701- 706: gyteg GqlTe-A vrrrp CLAB_LYCES : 27- 32: kfngs Gk-TkrA vtmlc CLAB_LYCES : 129- 135: llgli GegTgiA akvlk CLAB_LYCES : 305- 310: gepgv Gk-TaiA eglaq CLAB_LYCES : 698- 703: gyteg GqlTe-A vrrrp CLPA_BRANA : 79- 85: llgli GegTgiA akvlk CLPA_BRANA : 254- 259: gepgv Gk-TaiA eglaq CLPA_ECOLI : 219- 224: gesgv Gk-TaiA eglaw CLPA_ECOLI : 547- 552: gfdqg GllTd-A vikhp CLPA_ECOLI : 729- 734: slvdg GqvTv-A ldkek CLPA_PEA : 129- 135: llgli GegTgiA akvlk CLPA_PEA : 305- 310: gepgv Gk-TaiA eglaq CLPA_PEA : 698- 703: gyteg GqlTe-A vrrrp CLPA_RHOBL : 249- 254: gdpgv Gk-TaiA eglaw CLPA_RHOBL : 530- 535: gptgv Gk-TevA kqlaa CLPA_RHOBL : 656- 661: rerrt GedTa-A vertf CLPB_BACNO : 665- 670: gydqg GylTe-A vrrkp CLPB_ECOLI : 130- 134: ilkaa Ga-Tt-A nitqa CLPB_ECOLI : 471- 477: kasls GtqTikA eleqa CLPB_ECOLI : 660- 665: gyeeg GylTe-A vrrrp CLPB_HAEIN : 287- 292: tmvga Gk-TdgA mdagn CLPB_HAEIN : 660- 665: gyeeg GylTe-A vrrrp CLP_TRYBB : 209- 214: gepgv Gk-TaiA egiaq ERD1_ARATH : 321- 326: geagv Gk-TaiA eglai ERD1_ARATH : 719- 724: gfeeg GmlTe-A irrrp EXP4_STRPN : 6- 10: snagt Gk-Te-A svgfg H101_ARATH : 104- 109: aqksr Gd-ThlA vdqli H101_ARATH : 611- 616: gptgv Gk-TelA kalae H101_ARATH : 661- 666: gheeg GqlTe-A vrrrp H104_YEAST : 619- 624: glsgs Gk-TelA kkvag HS98_NEUCR : 20- 25: qlhxi GatTl-A eyrk HS98_NEUCR : 20- 25: qlhxi Ga-TtlA eyrk HSP7_YEAST : 428- 433: kcqre GvyTk-A selry HSP7_YEAST : 596- 601: lsesg GqlTe-A vrrkp MECB_BACSU : 4- 10: mmf GrfTerA qkvla MECB_BACSU : 213- 218: gepgv Gk-TaiA eglaq MECB_BACSU : 550- 555: gptgv Gk-TelA ralae S 19: 11.5102 36( 17) G-x(0,2)-T-x(3)-E Occurences: 36(17) CLAA_LYCES : 307- 313: gepgv Gk-TaiaE glaqr CLAA_LYCES : 407- 413: elqci Ga-TtldE yrkhi CLAB_LYCES : 305- 311: gepgv Gk-TaiaE glaqr CLAB_LYCES : 405- 411: elqci Ga-TtldE yrkhi CLPA_BRANA : 254- 260: gepgv Gk-TaiaE glaqr CLPA_BRANA : 354- 360: elqci Ga-TtldE yrkhi CLPA_BRANA : 858- 865: lnggs GtpTtslE eqeds CLPA_ECOLI : 141- 146: nfish G--TrkdE ptqss CLPA_ECOLI : 219- 225: gesgv Gk-TaiaE glawr CLPA_ECOLI : 320- 326: kirvi Gs-TtyqE fsnif CLPA_PEA : 305- 311: gepgv Gk-TaiaE glaqr CLPA_PEA : 405- 411: elqci Ga-TtldE yrkhi CLPA_RHOBL : 249- 255: gdpgv Gk-TaiaE glawk CLPA_RHOBL : 350- 356: klrcm Gs-TtykE frqhf CLPA_RHOBL : 452- 457: rkkvl G--TkeiE avvak CLPA_RHOBL : 656- 663: rerrt GedTaavE rtftp CLPB_BACNO : 215- 221: gepgv Gk-TaivE glaqr CLPB_BACNO : 316- 322: dlhci Ga-TtldE yrqym CLPB_ECOLI : 211- 217: gepgv Gk-TaivE glaqr CLPB_ECOLI : 312- 318: elhcv Ga-TtldE yrqyi CLPB_ECOLI : 471- 478: kasls GtqTikaE leqak CLPB_HAEIN : 211- 217: gepgv Gk-TaivE glaqr CLPB_HAEIN : 312- 318: elhcv Ga-TtldE yrqyi CLP_TRYBB : 209- 215: gepgv Gk-TaiaE giaqr CLP_TRYBB : 310- 316: elrti Ga-TtleE yrtyv ERD1_ARATH : 321- 327: geagv Gk-TaiaE glais EXP4_STRPN : 4- 9: sna G--TgktE asvgf H101_ARATH : 212- 218: gepgv Gk-TavvE glaqr H101_ARATH : 313- 319: qlrci Ga-TtleE yrkyv H101_ARATH : 519- 524: iaqle G--TsseE nvmlt H104_YEAST : 217- 223: gepgi Gk-TaiiE gvaqr H104_YEAST : 314- 320: qlkvi Ga-TtnnE yrsiv HS98_NEUCR : 20- 26: qlhxi Ga-TtlaE yrk HSP7_YEAST : 428- 435: kcqre GvyTkasE lrysr MECB_BACSU : 213- 219: gepgv Gk-TaiaE glaqq MECB_BACSU : 313- 319: elqci Ga-TtldE yrkyi T 20: 11.5102 57( 17) G-x(2,3)-T-x(1,2)-A Occurences: 57(17) CLAA_LYCES : 131- 137: llgli Geg-TgiA akvlk CLAA_LYCES : 261- 268: tleey GtnlTklA eegkl CLAA_LYCES : 305- 312: ligep GvgkTaiA eglaq CLAA_LYCES : 569- 575: agdaa GpivTe-A diqhi CLAA_LYCES : 700- 706: vgyte GgqlTe-A vrrrp CLAA_LYCES : 701- 706: gyteg Gql-Te-A vrrrp CLAB_LYCES : 25- 32: ttkfn GsgkTkrA vtmlc CLAB_LYCES : 129- 135: llgli Geg-TgiA akvlk CLAB_LYCES : 259- 266: tleey GtnlTklA eegkl CLAB_LYCES : 303- 310: ligep GvgkTaiA eglaq CLAB_LYCES : 566- 572: eaadt GplvTe-A diqhi CLAB_LYCES : 697- 703: vgyte GgqlTe-A vrrrp CLAB_LYCES : 698- 703: gyteg Gql-Te-A vrrrp CLPA_BRANA : 79- 85: llgli Geg-TgiA akvlk CLPA_BRANA : 208- 215: tleey GtnlTklA eegkl CLPA_BRANA : 252- 259: ligep GvgkTaiA eglaq CLPA_ECOLI : 217- 224: lvges GvgkTaiA eglaw CLPA_ECOLI : 546- 552: vgfdq GgllTd-A vikhp CLPA_ECOLI : 547- 552: gfdqg Gll-Td-A vikhp CLPA_ECOLI : 728- 734: gslvd GgqvTv-A ldkek CLPA_ECOLI : 729- 734: slvdg Gqv-Tv-A ldkek CLPA_PEA : 129- 135: llgli Geg-TgiA akvlk CLPA_PEA : 259- 266: tleey GtnlTklA eegkl CLPA_PEA : 303- 310: ligep GvgkTaiA eglaq CLPA_PEA : 697- 703: vgyte GgqlTe-A vrrrp CLPA_PEA : 698- 703: gyteg Gql-Te-A vrrrp CLPA_RHOBL : 247- 254: lvgdp GvgkTaiA eglaw CLPA_RHOBL : 528- 535: ftgpt GvgkTevA kqlaa CLPA_RHOBL : 656- 661: rerrt Ged-Ta-A vertf CLPB_BACNO : 366- 373: yevhh GiniTdpA lvaaa CLPB_BACNO : 664- 670: vgydq GgylTe-A vrrkp CLPB_BACNO : 665- 670: gydqg Gyl-Te-A vrrkp CLPB_ECOLI : 471- 477: kasls Gtq-TikA eleqa CLPB_ECOLI : 659- 665: vgyee GgylTe-A vrrrp CLPB_ECOLI : 660- 665: gyeeg Gyl-Te-A vrrrp CLPB_HAEIN : 285- 292: ihtmv GagkTdgA mdagn CLPB_HAEIN : 659- 665: vgyee GgylTe-A vrrrp CLPB_HAEIN : 660- 665: gyeeg Gyl-Te-A vrrrp CLP_TRYBB : 207- 214: ligep GvgkTaiA egiaq CLP_TRYBB : 304- 311: pmlar GelrTigA ttlee CLP_TRYBB : 360- 367: yeahh GvqiTdnA vvvaa ERD1_ARATH : 319- 326: llgea GvgkTaiA eglai ERD1_ARATH : 718- 724: vgfee GgmlTe-A irrrp ERD1_ARATH : 719- 724: gfeeg Gml-Te-A irrrp EXP4_STRPN : 4- 10: sna GtgkTe-A svgfg H101_ARATH : 609- 616: flgpt GvgkTelA kalae H101_ARATH : 660- 666: vghee GgqlTe-A vrrrp H101_ARATH : 661- 666: gheeg Gql-Te-A vrrrp H104_YEAST : 617- 624: flgls GsgkTelA kkvag HS98_NEUCR : 20- 25: qlhxi Gat-Tl-A eyrk HSP7_YEAST : 297- 304: yevhh GvriTdtA lvsaa HSP7_YEAST : 428- 433: kcqre Gvy-Tk-A selry HSP7_YEAST : 595- 601: vlses GgqlTe-A vrrkp HSP7_YEAST : 596- 601: lsesg Gql-Te-A vrrkp MECB_BACSU : 4- 10: mmf Grf-TerA qkvla MECB_BACSU : 211- 218: ligep GvgkTaiA eglaq MECB_BACSU : 548- 555: flgpt GvgkTelA ralae Number of patterns evaluated by Pratt:463 Total running time: 2 seconds