------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file CLATHRIN_LIGHT_CHN_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CLATHRIN_LIGHT_CHN_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CLC1_YEAST 233 CLCA_BOVIN 243 CLCA_HUMAN 248 CLCA_RAT 248 CLCB_BOVIN 228 CLCB_HUMAN 229 CLCB_RAT 229 Pratt run started at Thu Feb 6 19:07:47 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.1904 7( 7) V-x(3,4)-E-x(5)-E-x(0,1)-E-x(4)-L-x-D-x(3)-K 2: 28.1904 7( 7) A-x-E-x(0,1)-E-A-F-x(5)-E-x(2,3)-G 3: 27.6904 7( 7) D-x(0,1)-A-x(3,5)-Q-x(2)-A-D-x-I-G 4: 27.6904 7( 7) D-x(4)-I-x(3)-D-R-x(0,2)-L-x(1,2)-E-x(5)-K 5: 27.6904 7( 7) D-x(4)-F-L-x(3,4)-E-x(0,2)-I-x-G-x-E 6: 27.6904 7( 7) E-D-x-A-x(0,2)-A-x(0,1)-A-F-L 7: 24.5203 7( 7) V-x(3)-R-S-x(0,1)-V-x(4)-K-Q 8: 24.5203 7( 7) F-x(3,4)-E-x-E-I-x-G-x-E 9: 24.0203 7( 7) E-x(0,1)-E-A-F-x(5)-E-x(2,3)-G 10: 24.0203 7( 7) D-x(3,4)-E-x-E-x(0,1)-S-x(2)-K-x(3)-E 11: 24.0203 7( 7) A-x(2)-E-x-E-x(0,1)-A-x(4,5)-D-x(2)-F 12: 24.0203 7( 7) A-x(3)-S-x(3,4)-G-x(0,1)-E-x-D-x(2)-F 13: 24.0203 7( 7) A-x(2)-L-x(1,2)-Q-x(4)-I-x-G-x(2,3)-D 14: 24.0203 7( 7) E-x-D-x(4,5)-F-x(1,2)-A-x-Q-x(2)-E 15: 23.5203 7( 7) S-x(2,4)-R-S-x(0,1)-V-x(4)-K-Q 16: 23.5203 7( 7) D-x(2,4)-R-x-R-S-x-L-x(2,3)-L 17: 23.5203 7( 7) N-x(2,3)-S-S-x-Q-x(3,5)-V-S 18: 23.5203 7( 7) E-x(4)-A-x(3,5)-D-F-x(2,3)-S-x(4)-K 19: 23.5203 7( 7) E-x(2)-G-x-E-x(1,3)-E-x(4)-L-x(4,5)-P 20: 23.5203 7( 7) E-x(0,1)-E-x(2)-G-x-E-x(1,3)-E-x(4)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 98.3516 7( 7) A-x-E-x(0,1)-E-A-F-[LV]-x-[DEK]-x-[DEK]-E-x(2,3)-G-[QT]-[DE]-x-[ET]-x(2)-[AD]-[QR]-[AL]-x-[DQ]-[FL]-x-[NP]-x-[DS]-[DS]-x-[DQ]-x(2)-[DG]-[GV]-[RS]-[DR]-x-[RS]-x-[LV]-x(3)-L B 2: 97.3524 7( 7) E-x(0,1)-E-A-F-[LV]-x-[DEK]-x-[DEK]-E-x(2,3)-G-[QT]-[DE]-x-[ET]-x(2)-[AD]-[QR]-[AL]-x-[DQ]-[FL]-x-[NP]-x-[DS]-[DS]-x-[DQ]-x(2)-[DG]-[GV]-[RS]-[DR]-x-[RS]-x-[LV]-x(3)-L-x-[QR] C 3: 85.5311 7( 7) E-D-[AP]-A-x(0,2)-A-x(0,1)-A-F-L-x(2)-[QR]-[DE]-[ES]-x-[FI]-[AG]-[GQ]-x-[EN]-[NT]-[DT]-x-[ADG]-x-[AG]-[AIL]-x(2)-[AGI]-[GNS]-x(2)-[ADG]-x-[ADQ]-x(2)-G-x(2)-[DPS] D 4: 82.7694 7( 7) D-x(3,4)-E-[PT]-E-x(0,1)-S-[IP]-x-K-x-[DR]-[DE]-E-x(2)-[DEK]-x(2)-[EQ]-[AEQ]-[FL]-[DP]-[AD]-x-[NS]-x(3)-[EG]-[AQ]-x(3)-[DE]-x-[AN]-x(2)-[ADE]-x(2)-[ES]-x(2)-[ANQ]-[DR] E 5: 74.0202 7( 7) D-[DP]-[AD]-[AT]-[AD]-F-L-x(3,4)-E-x(0,2)-I-[AL]-G-x-E-x-[DK]-[EST]-[AEG]-x-[ADG]-x-[ILP]-x-[AEG]-[GST]-x-[AGPV]-[AGS]-x-[AQ]-x(2)-[DG] F 6: 68.6217 7( 7) E-[AE]-D-x(4,5)-F-x(1,2)-A-[NQ]-Q-[ES]-[ST]-E-x-[AV]-x(2)-[DE]-[NR]-[DS]-[ES]-[AGV]-[FV]-[ADG]-x(3)-[AGQ]-x(2)-[AGPV]-[AGV] G 7: 66.3989 7( 7) V-x(3,4)-E-x-[DST]-[LP]-x-[DT]-E-x(0,1)-E-x(3)-[EQR]-L-x-D-x-[AN]-[IP]-K-x(2)-[DK]-[DQ]-x(2)-D-[SV]-x-[NR]-x-[KR] H 8: 66.1415 7( 7) A-[AL]-x-L-x(1,2)-Q-[DQ]-[DE]-[AS]-[DE]-I-[AI]-G-x(2,3)-D-[ERS]-[AGS]-x-[AGL]-x(3)-[AGL]-x(2)-[AGLPV]-x(2)-[ANQ]-x(2)-[AG]-x-[AGPT]-[APS] I 9: 63.2429 7( 7) A-[QT]-x-[ES]-S-x(3,4)-G-x(0,1)-E-[AN]-D-[DES]-[ADG]-F-[AGS]-x(2)-[ADE]-[AG]-[AGS]-x(2)-[AGS]-x-[AEQ]-x(4)-[ADPT]-x-[GS]-x(3)-[ADE] J 10: 61.1877 7( 7) F-x(3,4)-E-[AS]-E-I-[AL]-G-x-E-x-[DK]-[EST]-[AEG]-x-[ADG]-x-[ILP]-x-[AEG]-[GST]-x-[AGPV]-[AGS]-x-[AQ]-x(2)-[DG] K 11: 58.1987 7( 7) D-[DGS]-x-[AD]-[AI]-I-[AGS]-[EGQ]-x-D-R-x(0,2)-L-x(1,2)-E-[IP]-x(4)-K-x-[NR]-[AE]-[EK]-[AQ] L 12: 58.1026 7( 7) E-x(0,1)-E-x-[ALP]-G-x-E-x(1,3)-E-x(2)-[AD]-x-L-x-[DGT]-x-[AN]-[PS]-x-[APS]-x(3)-[CDG]-[EK]-x(2)-[DGS]-x(2)-[DER]-[AQS]-[FV] M 13: 58.0757 7( 7) N-x(2,3)-S-S-[DK]-Q-x(3,5)-V-S-[RS]-x-[NR]-[DS]-[NV]-[GL]-x-[AS]-x-[DK]-[DQ]-x-[PS]-x(2)-[EHR] N 14: 48.4736 7( 7) E-x-[EQ]-[DKR]-x-A-x(3,5)-D-F-x(2,3)-S-x(4)-K-[DE]-x-[QS]-x(2)-[DR]-[AS]-[AV]-x(2)-[AS] O 15: 44.7293 7( 7) A-[AQ]-x-E-[AS]-E-x(0,1)-A-x(4,5)-D-[ES]-x-F-[AG]-x(2)-[ADN]-[AGT]-[GST] P 16: 43.0565 7( 7) V-x-[ER]-x-R-S-x(0,1)-V-[LV]-x-[QS]-x-K-Q-x(2)-[AL]-[SV]-[EHR] Q 17: 38.8799 7( 7) S-x(2,4)-R-S-x(0,1)-V-[LV]-x-[QS]-x-K-Q-x(2)-[AL]-[SV]-[EHR] R 18: 37.9513 7( 7) D-[DGS]-x-[AD]-[AI]-I-[AGS]-[EGQ]-x-D-R-x(0,2)-L-x(1,2)-E S 19: 36.1310 7( 7) D-x(0,1)-A-x(3,5)-Q-[DP]-x-A-D-x-I-G-x(2)-[ADT]-[NRS] T 20: 32.4832 7( 7) D-x(2,4)-R-x-R-S-x-L-x(2,3)-L-x-[QR]-x(2)-[GL]-[NSV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 98.3516 7( 7) A-x-E-x(0,1)-E-A-F-[LV]-x-[DEK]-x-[DEK]-E-x(2,3)-G-[QT]-[DE]-x-[ET]-x(2)-[AD]-[QR]-[AL]-x-[DQ]-[FL]-x-[NP]-x-[DS]-[DS]-x-[DQ]-x(2)-[DG]-[GV]-[RS]-[DR]-x-[RS]-x-[LV]-x(3)-L Occurences: 7(7) CLC1_YEAST : 173- 221: qleda AkEaEAFLkKrDEff-GQDnTtwDRAlQLiNqDDaDiiGGRDrSkLkeiL lrlkg CLCA_BOVIN : 188- 236: ysleq AaE-EAFVnDiEEsspGTEwErvARLcDFnPkSSkQakDVSRmRsVlisL kqapl CLCA_HUMAN : 193- 241: ysleq AaE-EAFVnDiDEsspGTEwErvARLcDFnPkSSkQakDVSRmRsVlisL kqapl CLCA_RAT : 193- 241: ysleq AaE-EAFVnDiDEsspGTEwErvARLcDFnPkSSkQakDVSRmRsVlisL kqapl CLCB_BOVIN : 173- 221: iigyv AsE-EAFVkEsKEetpGTEwEkvAQLcDFnPkSSkQckDVSRlRsVlmsL kqtpl CLCB_HUMAN : 174- 222: iigyv AsE-EAFVkEsKEetpGTEwEkvAQLcDFnPkSSkQckDVSRlRsVlmsL kqtpl CLCB_RAT : 174- 222: tigyv AsE-EAFVkEsKEetpGTEwEkvAQLcDFnPkSSkQckDVSRlRsVlmsL kqtpl B 2: 97.3524 7( 7) E-x(0,1)-E-A-F-[LV]-x-[DEK]-x-[DEK]-E-x(2,3)-G-[QT]-[DE]-x-[ET]-x(2)-[AD]-[QR]-[AL]-x-[DQ]-[FL]-x-[NP]-x-[DS]-[DS]-x-[DQ]-x(2)-[DG]-[GV]-[RS]-[DR]-x-[RS]-x-[LV]-x(3)-L-x-[QR] Occurences: 7(7) CLC1_YEAST : 175- 223: edaak EaEAFLkKrDEff-GQDnTtwDRAlQLiNqDDaDiiGGRDrSkLkeiLlR lkgna CLCA_BOVIN : 190- 238: leqaa E-EAFVnDiEEsspGTEwErvARLcDFnPkSSkQakDVSRmRsVlisLkQ aplvh CLCA_HUMAN : 195- 243: leqaa E-EAFVnDiDEsspGTEwErvARLcDFnPkSSkQakDVSRmRsVlisLkQ aplvh CLCA_RAT : 195- 243: leqaa E-EAFVnDiDEsspGTEwErvARLcDFnPkSSkQakDVSRmRsVlisLkQ aplvh CLCB_BOVIN : 175- 223: gyvas E-EAFVkEsKEetpGTEwEkvAQLcDFnPkSSkQckDVSRlRsVlmsLkQ tplsr CLCB_HUMAN : 176- 224: gyvas E-EAFVkEsKEetpGTEwEkvAQLcDFnPkSSkQckDVSRlRsVlmsLkQ tplsr CLCB_RAT : 176- 224: gyvas E-EAFVkEsKEetpGTEwEkvAQLcDFnPkSSkQckDVSRlRsVlmsLkQ tplsr C 3: 85.5311 7( 7) E-D-[AP]-A-x(0,2)-A-x(0,1)-A-F-L-x(2)-[QR]-[DE]-[ES]-x-[FI]-[AG]-[GQ]-x-[EN]-[NT]-[DT]-x-[ADG]-x-[AG]-[AIL]-x(2)-[AGI]-[GNS]-x(2)-[ADG]-x-[ADQ]-x(2)-G-x(2)-[DPS] Occurences: 7(7) CLC1_YEAST : 170- 213: keqql EDAAkeAeAFLkkRDEfFGQdNTTwDrALqlINqdDaDiiGgrD rsklk CLCA_BOVIN : 24- 64: gvage EDPA--A-AFLaqQESeIAGiENDeAfAIldGGapGsQphGepP gipda CLCA_HUMAN : 29- 69: agage EDPA--A-AFLaqQESeIAGiENDeAfAIldGGapGpQphGepP ggpda CLCA_RAT : 29- 69: agage EDPA--A-AFLaqQESeIAGiENDeAfAIldGGapGpQahGepP ggpda CLCB_BOVIN : 21- 61: peaae EDPA--A-AFLaqQESeIAGiENDeGfGApaGSqgGlAqpGpaS gased CLCB_HUMAN : 21- 61: peaae EDPA--A-AFLaqQESeIAGiENDeGfGApaGShaApAqpGptS gagse CLCB_RAT : 21- 61: peaae EDPA--A-AFLaqQESeIAGiENDsGfGApaASqvAsAqpGlaS gggse D 4: 82.7694 7( 7) D-x(3,4)-E-[PT]-E-x(0,1)-S-[IP]-x-K-x-[DR]-[DE]-E-x(2)-[DEK]-x(2)-[EQ]-[AEQ]-[FL]-[DP]-[AD]-x-[NS]-x(3)-[EG]-[AQ]-x(3)-[DE]-x-[AN]-x(2)-[ADE]-x(2)-[ES]-x(2)-[ANQ]-[DR] Occurences: 7(7) CLC1_YEAST : 44- 92: fkteq Ddil-ETEaSPaKdDDEirDfeEQFPDiNsanGAvssDqNgsAtvSsgND ngead CLCA_BOVIN : 96- 144: aisqv DrlqsEPE-SIrKwREEqtErlEALDAnSrkqEAewkEkAikEldEwyAR qdeql CLCA_HUMAN : 101- 149: aisqv DrlqsEPE-SIrKwREEqmErlEALDAnSrkqEAewkEkAikEleEwyAR qdeql CLCA_RAT : 101- 149: aisev DrlqsEPE-SIrKwREEqtErlEALDAnSrkqEAewkEkAvkEleEwyAR qdeql CLCB_BOVIN : 93- 141: aiaqa DrltqEPE-SIrKwREEqrKrlQELDAaSkvmEQewrEkAkkDleEwnQR qseqv CLCB_HUMAN : 94- 142: aiaqa DrltqEPE-SIrKwREEqrKrlQELDAaSkvtEQewrEkAkkDleEwnQR qseqv CLCB_RAT : 94- 142: aiaqa DrltqEPE-SIrKwREEqkKrlQELDAaSkvtEQewrEkAkkDleEwnQR qseqv E 5: 74.0202 7( 7) D-[DP]-[AD]-[AT]-[AD]-F-L-x(3,4)-E-x(0,2)-I-[AL]-G-x-E-x-[DK]-[EST]-[AEG]-x-[ADG]-x-[ILP]-x-[AEG]-[GST]-x-[AGPV]-[AGS]-x-[AQ]-x(2)-[DG] Occurences: 7(7) CLC1_YEAST : 22- 57: pndkk DDDTDFLkreaE--ILGdEfKTEqDdIlETeASpAkdD deird CLCA_BOVIN : 25- 61: vagee DPAAAFLaqq-EseIAGiEnDEAfAiLdGGaPGsQphG eppgi CLCA_HUMAN : 30- 66: gagee DPAAAFLaqq-EseIAGiEnDEAfAiLdGGaPGpQphG eppgg CLCA_RAT : 30- 66: gagee DPAAAFLaqq-EseIAGiEnDEAfAiLdGGaPGpQahG eppgg CLCB_BOVIN : 22- 58: eaaee DPAAAFLaqq-EseIAGiEnDEGfGaPaGSqGGlAqpG pasga CLCB_HUMAN : 22- 58: eaaee DPAAAFLaqq-EseIAGiEnDEGfGaPaGShAApAqpG ptsga CLCB_RAT : 22- 58: eaaee DPAAAFLaqq-EseIAGiEnDSGfGaPaASqVAsAqpG lasgg F 6: 68.6217 7( 7) E-[AE]-D-x(4,5)-F-x(1,2)-A-[NQ]-Q-[ES]-[ST]-E-x-[AV]-x(2)-[DE]-[NR]-[DS]-[ES]-[AGV]-[FV]-[ADG]-x(3)-[AGQ]-x(2)-[AGPV]-[AGV] Occurences: 7(7) CLC1_YEAST : 95- 130: gndng EADddfstFegANQSTEsVkeDRSEVVDqwkQrrAV eihek CLCA_BOVIN : 23- 56: ngvag EEDpaaa-Fl-AQQESEiAgiENDEAFAildGgaPG sqphg CLCA_HUMAN : 28- 61: vagag EEDpaaa-Fl-AQQESEiAgiENDEAFAildGgaPG pqphg CLCA_RAT : 28- 61: vagag EEDpaaa-Fl-AQQESEiAgiENDEAFAildGgaPG pqahg CLCB_BOVIN : 20- 53: apeaa EEDpaaa-Fl-AQQESEiAgiENDEGFGapaGsqGG laqpg CLCB_HUMAN : 20- 53: apeaa EEDpaaa-Fl-AQQESEiAgiENDEGFGapaGshAA paqpg CLCB_RAT : 20- 53: apeaa EEDpaaa-Fl-AQQESEiAgiENDSGFGapaAsqVA saqpg G 7: 66.3989 7( 7) V-x(3,4)-E-x-[DST]-[LP]-x-[DT]-E-x(0,1)-E-x(3)-[EQR]-L-x-D-x-[AN]-[IP]-K-x(2)-[DK]-[DQ]-x(2)-D-[SV]-x-[NR]-x-[KR] Occurences: 7(7) CLC1_YEAST : 130- 164: kqrra Veih-EkDLkDE-ElkkELqDeAIKhiDDfyDSyNkK keqql CLCA_BOVIN : 194- 230: aeeaf VndieEsSPgTEwErvaRLcDfNPKssKQakDVsRmR svlis CLCA_HUMAN : 199- 235: aeeaf VndidEsSPgTEwErvaRLcDfNPKssKQakDVsRmR svlis CLCA_RAT : 199- 235: aeeaf VndidEsSPgTEwErvaRLcDfNPKssKQakDVsRmR svlis CLCB_BOVIN : 179- 215: seeaf VkeskEeTPgTEwEkvaQLcDfNPKssKQckDVsRlR svlms CLCB_HUMAN : 180- 216: seeaf VkeskEeTPgTEwEkvaQLcDfNPKssKQckDVsRlR svlms CLCB_RAT : 180- 216: seeaf VkeskEeTPgTEwEkvaQLcDfNPKssKQckDVsRlR svlms H 8: 66.1415 7( 7) A-[AL]-x-L-x(1,2)-Q-[DQ]-[DE]-[AS]-[DE]-I-[AI]-G-x(2,3)-D-[ERS]-[AGS]-x-[AGL]-x(3)-[AGL]-x(2)-[AGLPV]-x(2)-[ANQ]-x(2)-[AG]-x-[AGPT]-[APS] Occurences: 7(7) CLC1_YEAST : 197- 233: ttwdr ALqLinQDDADIIGgr-DRSkLkeiLlrLkgNakApGA CLCA_BOVIN : 28- 64: eedpa AAfLa-QQESEIAGienDEAfAildGgaPgsQphGePP gipda CLCA_HUMAN : 33- 69: eedpa AAfLa-QQESEIAGienDEAfAildGgaPgpQphGePP ggpda CLCA_RAT : 33- 69: eedpa AAfLa-QQESEIAGienDEAfAildGgaPgpQahGePP ggpda CLCB_BOVIN : 25- 61: eedpa AAfLa-QQESEIAGienDEGfGapaGsqGglAqpGpAS gased CLCB_HUMAN : 25- 61: eedpa AAfLa-QQESEIAGienDEGfGapaGshAapAqpGpTS gagse CLCB_RAT : 25- 61: eedpa AAfLa-QQESEIAGienDSGfGapaAsqVasAqpGlAS gggse I 9: 63.2429 7( 7) A-[QT]-x-[ES]-S-x(3,4)-G-x(0,1)-E-[AN]-D-[DES]-[ADG]-F-[AGS]-x(2)-[ADE]-[AG]-[AGS]-x(2)-[AGS]-x-[AEQ]-x(4)-[ADPT]-x-[GS]-x(3)-[ADE] Occurences: 7(7) CLC1_YEAST : 85- 122: dqngs ATvSSgndnG-EADDDFStfEGAnqStEsvkeDrSevvD qwkqr CLCA_BOVIN : 32- 69: aaafl AQqESeia-GiENDEAFAilDGGapGsQphgePpGipdA vdgvt CLCA_HUMAN : 37- 74: aaafl AQqESeia-GiENDEAFAilDGGapGpQphgePpGgpdA vdgvm CLCA_RAT : 37- 74: aaafl AQqESeia-GiENDEAFAilDGGapGpQahgePpGgpdA vdgvm CLCB_BOVIN : 29- 66: aaafl AQqESeia-GiENDEGFGapAGSqgGlAqpgpAsGaseD mgatv CLCB_HUMAN : 29- 66: aaafl AQqESeia-GiENDEGFGapAGShaApAqpgpTsGagsE dmgtt CLCB_RAT : 29- 66: aaafl AQqESeia-GiENDSGFGapAASqvAsAqpglAsGggsE dmgtt J 10: 61.1877 7( 7) F-x(3,4)-E-[AS]-E-I-[AL]-G-x-E-x-[DK]-[EST]-[AEG]-x-[ADG]-x-[ILP]-x-[AEG]-[GST]-x-[AGPV]-[AGS]-x-[AQ]-x(2)-[DG] Occurences: 7(7) CLC1_YEAST : 27- 57: dddtd Flkr-EAEILGdEfKTEqDdIlETeASpAkdD deird CLCA_BOVIN : 30- 61: dpaaa FlaqqESEIAGiEnDEAfAiLdGGaPGsQphG eppgi CLCA_HUMAN : 35- 66: dpaaa FlaqqESEIAGiEnDEAfAiLdGGaPGpQphG eppgg CLCA_RAT : 35- 66: dpaaa FlaqqESEIAGiEnDEAfAiLdGGaPGpQahG eppgg CLCB_BOVIN : 27- 58: dpaaa FlaqqESEIAGiEnDEGfGaPaGSqGGlAqpG pasga CLCB_HUMAN : 27- 58: dpaaa FlaqqESEIAGiEnDEGfGaPaGShAApAqpG ptsga CLCB_RAT : 27- 58: dpaaa FlaqqESEIAGiEnDSGfGaPaASqVAsAqpG lasgg K 11: 58.1987 7( 7) D-[DGS]-x-[AD]-[AI]-I-[AGS]-[EGQ]-x-D-R-x(0,2)-L-x(1,2)-E-[IP]-x(4)-K-x-[NR]-[AE]-[EK]-[AQ] Occurences: 7(7) CLC1_YEAST : 204- 230: qlinq DDaDIIGGrDRskLk-EIllrlKgNAKA pga CLCA_BOVIN : 87- 112: sngpt DSyAAISQvDR--LqsEPesirKwREEQ terle CLCA_HUMAN : 92- 117: sngpt DSyAAISQvDR--LqsEPesirKwREEQ merle CLCA_RAT : 92- 117: sngpt DSyAAISEvDR--LqsEPesirKwREEQ terle CLCB_BOVIN : 84- 109: angpa DGyAAIAQaDR--LtqEPesirKwREEQ rkrlq CLCB_HUMAN : 85- 110: angpa DGyAAIAQaDR--LtqEPesirKwREEQ rkrlq CLCB_RAT : 85- 110: angpa DGyAAIAQaDR--LtqEPesirKwREEQ kkrlq L 12: 58.1026 7( 7) E-x(0,1)-E-x-[ALP]-G-x-E-x(1,3)-E-x(2)-[AD]-x-L-x-[DGT]-x-[AN]-[PS]-x-[APS]-x(3)-[CDG]-[EK]-x(2)-[DGS]-x(2)-[DER]-[AQS]-[FV] Occurences: 7(7) CLC1_YEAST : 31- 67: dflkr EaEiLGdEfktEqdDiLeTeASpAkddDEirDfeEQF pdins CLCA_BOVIN : 35- 70: flaqq EsEiAGiEnd-EafAiLdGgAPgSqphGEppGipDAV dgvtn CLCA_HUMAN : 40- 75: flaqq EsEiAGiEnd-EafAiLdGgAPgPqphGEppGgpDAV dgvmn CLCA_RAT : 40- 75: flaqq EsEiAGiEnd-EafAiLdGgAPgPqahGEppGgpDAV dgvmn CLCB_BOVIN : 184- 217: vkesk E-EtPGtEw--EkvAqLcDfNPkSskqCKdvSrlRSV lmslk CLCB_HUMAN : 185- 218: vkesk E-EtPGtEw--EkvAqLcDfNPkSskqCKdvSrlRSV lmslk CLCB_RAT : 185- 218: vkesk E-EtPGtEw--EkvAqLcDfNPkSskqCKdvSrlRSV lmslk M 13: 58.0757 7( 7) N-x(2,3)-S-S-[DK]-Q-x(3,5)-V-S-[RS]-x-[NR]-[DS]-[NV]-[GL]-x-[AS]-x-[DK]-[DQ]-x-[PS]-x(2)-[EHR] Occurences: 7(7) CLC1_YEAST : 74- 104: dinsa NgavSSDQngsatVSSgNDNGeAdDDfStfE ganqs CLCA_BOVIN : 216- 243: rlcdf Npk-SSKQakd--VSRmRSVLiSlKQaPlvH CLCA_HUMAN : 221- 248: rlcdf Npk-SSKQakd--VSRmRSVLiSlKQaPlvH CLCA_RAT : 221- 248: rlcdf Npk-SSKQakd--VSRmRSVLiSlKQaPlvH CLCB_BOVIN : 201- 228: qlcdf Npk-SSKQckd--VSRlRSVLmSlKQtPlsR CLCB_HUMAN : 202- 229: qlcdf Npk-SSKQckd--VSRlRSVLmSlKQtPlsR CLCB_RAT : 202- 229: qlcdf Npk-SSKQckd--VSRlRSVLmSlKQtPlsR N 14: 48.4736 7( 7) E-x-[EQ]-[DKR]-x-A-x(3,5)-D-F-x(2,3)-S-x(4)-K-[DE]-x-[QS]-x(2)-[DR]-[AS]-[AV]-x(2)-[AS] Occurences: 7(7) CLC1_YEAST : 145- 176: eelkk ElQDeAikhidDFyd-SynkkKEqQleDAAkeA eaflk CLCA_BOVIN : 205- 235: sspgt EwERvArlc--DFnpkSskqaKDvSrmRSVliS lkqap CLCA_HUMAN : 210- 240: sspgt EwERvArlc--DFnpkSskqaKDvSrmRSVliS lkqap CLCA_RAT : 210- 240: sspgt EwERvArlc--DFnpkSskqaKDvSrmRSVliS lkqap CLCB_BOVIN : 190- 220: etpgt EwEKvAqlc--DFnpkSskqcKDvSrlRSVlmS lkqtp CLCB_HUMAN : 191- 221: etpgt EwEKvAqlc--DFnpkSskqcKDvSrlRSVlmS lkqtp CLCB_RAT : 191- 221: etpgt EwEKvAqlc--DFnpkSskqcKDvSrlRSVlmS lkqtp O 15: 44.7293 7( 7) A-[AQ]-x-E-[AS]-E-x(0,1)-A-x(4,5)-D-[ES]-x-F-[AG]-x(2)-[ADN]-[AGT]-[GST] Occurences: 7(7) CLC1_YEAST : 172- 193: qqled AAkEAE-AflkkrDEfFGqdNTT wdral CLCA_BOVIN : 32- 53: aaafl AQqESEiAgien-DEaFAilDGG apgsq CLCA_HUMAN : 37- 58: aaafl AQqESEiAgien-DEaFAilDGG apgpq CLCA_RAT : 37- 58: aaafl AQqESEiAgien-DEaFAilDGG apgpq CLCB_BOVIN : 29- 50: aaafl AQqESEiAgien-DEgFGapAGS qggla CLCB_HUMAN : 29- 50: aaafl AQqESEiAgien-DEgFGapAGS haapa CLCB_RAT : 29- 50: aaafl AQqESEiAgien-DSgFGapAAS qvasa P 16: 43.0565 7( 7) V-x-[ER]-x-R-S-x(0,1)-V-[LV]-x-[QS]-x-K-Q-x(2)-[AL]-[SV]-[EHR] Occurences: 7(7) CLC1_YEAST : 113- 131: qstes VkEdRSeVVdQwKQrrAVE ihekd CLCA_BOVIN : 226- 243: kqakd VsRmRS-VLiSlKQapLVH CLCA_HUMAN : 231- 248: kqakd VsRmRS-VLiSlKQapLVH CLCA_RAT : 231- 248: kqakd VsRmRS-VLiSlKQapLVH CLCB_BOVIN : 211- 228: kqckd VsRlRS-VLmSlKQtpLSR CLCB_HUMAN : 212- 229: kqckd VsRlRS-VLmSlKQtpLSR CLCB_RAT : 212- 229: kqckd VsRlRS-VLmSlKQtpLSR Q 17: 38.8799 7( 7) S-x(2,4)-R-S-x(0,1)-V-[LV]-x-[QS]-x-K-Q-x(2)-[AL]-[SV]-[EHR] Occurences: 7(7) CLC1_YEAST : 112- 131: nqste SvkedRSeVVdQwKQrrAVE ihekd CLCA_BOVIN : 227- 243: qakdv Srm--RS-VLiSlKQapLVH CLCA_HUMAN : 232- 248: qakdv Srm--RS-VLiSlKQapLVH CLCA_RAT : 232- 248: qakdv Srm--RS-VLiSlKQapLVH CLCB_BOVIN : 212- 228: qckdv Srl--RS-VLmSlKQtpLSR CLCB_HUMAN : 213- 229: qckdv Srl--RS-VLmSlKQtpLSR CLCB_RAT : 213- 229: qckdv Srl--RS-VLmSlKQtpLSR R 18: 37.9513 7( 7) D-[DGS]-x-[AD]-[AI]-I-[AGS]-[EGQ]-x-D-R-x(0,2)-L-x(1,2)-E Occurences: 7(7) CLC1_YEAST : 204- 219: qlinq DDaDIIGGrDRskLk-E illrl CLCA_BOVIN : 87- 101: sngpt DSyAAISQvDR--LqsE pesir CLCA_HUMAN : 92- 106: sngpt DSyAAISQvDR--LqsE pesir CLCA_RAT : 92- 106: sngpt DSyAAISEvDR--LqsE pesir CLCB_BOVIN : 84- 98: angpa DGyAAIAQaDR--LtqE pesir CLCB_HUMAN : 85- 99: angpa DGyAAIAQaDR--LtqE pesir CLCB_RAT : 85- 99: angpa DGyAAIAQaDR--LtqE pesir S 19: 36.1310 7( 7) D-x(0,1)-A-x(3,5)-Q-[DP]-x-A-D-x-I-G-x(2)-[ADT]-[NRS] Occurences: 7(7) CLC1_YEAST : 195- 214: dnttw DrAlqlinQDdADiIGgrDR sklke CLCA_BOVIN : 160- 177: nnrva DeAfyk--QPfADvIGyvTN inhpc CLCA_HUMAN : 165- 182: nnrva DeAfyk--QPfADvIGyvTN inhpc CLCA_RAT : 165- 182: snrva DeAfyk--QPfADvIGyvTN inhpc CLCB_BOVIN : 157- 174: nnria DkAfyq--QPdADiIGyvAS eeafv CLCB_HUMAN : 158- 175: nnria DkAfyq--QPdADiIGyvAS eeafv CLCB_RAT : 158- 175: nnria DkAfyq--QPdADtIGyvAS eeafv T 20: 32.4832 7( 7) D-x(2,4)-R-x-R-S-x-L-x(2,3)-L-x-[QR]-x(2)-[GL]-[NSV] Occurences: 7(7) CLC1_YEAST : 207- 227: nqdda DiiggRdRSkLkeiLlRlkGN akapg CLCA_BOVIN : 225- 242: skqak Dvs--RmRSvLis-LkQapLV h CLCA_HUMAN : 230- 247: skqak Dvs--RmRSvLis-LkQapLV h CLCA_RAT : 230- 247: skqak Dvs--RmRSvLis-LkQapLV h CLCB_BOVIN : 210- 227: skqck Dvs--RlRSvLms-LkQtpLS r CLCB_HUMAN : 211- 228: skqck Dvs--RlRSvLms-LkQtpLS r CLCB_RAT : 211- 228: skqck Dvs--RlRSvLms-LkQtpLS r Number of patterns evaluated by Pratt:8596 Total running time: 3 seconds