------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file CLATHRIN_LIGHT_CHN_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CLATHRIN_LIGHT_CHN_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CLCA_BOVIN 243 CLCA_HUMAN 248 CLCA_RAT 248 CLCB_BOVIN 228 CLCB_HUMAN 229 CLCB_RAT 229 Pratt run started at Thu Feb 6 19:07:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 158.4619 6( 6) A-F-V-x(4)-E-x(2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P-L 2: 158.4619 6( 6) E-A-F-V-x(4)-E-x(2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P 3: 158.4619 6( 6) E-E-A-F-V-x(4)-E-x(2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q 4: 158.4619 6( 6) A-x-E-E-A-F-V-x(4)-E-x(2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K 5: 154.2919 6( 6) F-V-x(4)-E-x(2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P-L 6: 150.1218 6( 6) V-x(4)-E-x(2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P-L 7: 145.9518 6( 6) E-x(2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P-L 8: 145.4518 9( 6) E-x(1,2)-P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P-L 9: 141.7817 6( 6) P-G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P-L 10: 140.7817 6( 6) D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A-x-K-x-L-x-E-W-x(2)-R-Q 11: 140.7817 6( 6) Y-A-A-I-x(3)-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A-x-K-x-L 12: 140.7817 6( 6) D-x-Y-A-A-I-x(3)-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A-x-K 13: 140.7817 6( 6) P-x-D-x-Y-A-A-I-x(3)-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A 14: 140.7817 6( 6) N-G-P-x-D-x-Y-A-A-I-x(3)-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E 15: 140.7817 6( 6) E-x-N-G-P-x-D-x-Y-A-A-I-x(3)-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W 16: 137.6117 6( 6) G-T-E-W-E-x-V-A-x-L-C-D-F-N-P-K-S-S-K-Q-x-K-D-V-S-R-x-R-S-V-L-x-S-L-K-Q-x-P-L 17: 137.1117 6( 6) Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A-x-K-x-L-x-E-W-x(2)-R-Q-x-E-Q 18: 136.6117 6( 6) L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A-x-K-x-L-x-E-W-x(2)-R-Q-x-E 19: 136.6117 6( 6) R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A-x-K-x-L-x-E-W-x(2)-R-Q 20: 136.6117 6( 6) I-x(3)-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x(2)-R-L-x(2)-L-D-A-x-S-x(3)-E-x-E-W-x-E-K-A-x-K-x-L-x-E-W Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 190.4386 6( 6) E-E-A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT] B 2: 190.4386 6( 6) A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L C 3: 190.4386 6( 6) E-A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P D 4: 190.4198 6( 6) A-[AS]-E-E-A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K E 5: 189.4396 6( 6) F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV] F 6: 188.4465 6( 6) V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] G 7: 179.3737 6( 6) N-G-P-[AT]-D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E H 8: 179.3737 6( 6) P-[AT]-D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A I 9: 179.3047 6( 6) E-[AS]-N-G-P-[AT]-D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W J 10: 178.4746 6( 6) E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] K 11: 176.1757 6( 6) D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K L 12: 176.1658 6( 6) Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L M 13: 175.1663 6( 6) I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W N 14: 173.0721 6( 6) D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q O 15: 172.5997 6( 6) Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q-[DS]-E-Q P 16: 172.0997 6( 6) L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q-[DS]-E Q 17: 171.6086 9( 6) E-x(1,2)-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] R 18: 168.9020 6( 6) R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q S 19: 167.9386 6( 6) P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] T 20: 163.7686 6( 6) G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 190.4386 6( 6) E-E-A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT] Occurences: 6(6) CLCA_BOVIN : 190- 239: leqaa EEAFVnDiEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA plvh CLCA_HUMAN : 195- 244: leqaa EEAFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA plvh CLCA_RAT : 195- 244: leqaa EEAFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA plvh CLCB_BOVIN : 175- 224: gyvas EEAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQT plsr CLCB_HUMAN : 176- 225: gyvas EEAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQT plsr CLCB_RAT : 176- 225: gyvas EEAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQT plsr B 2: 190.4386 6( 6) A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L Occurences: 6(6) CLCA_BOVIN : 192- 241: qaaee AFVnDiEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL vh CLCA_HUMAN : 197- 246: qaaee AFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL vh CLCA_RAT : 197- 246: qaaee AFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL vh CLCB_BOVIN : 177- 226: vasee AFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL sr CLCB_HUMAN : 178- 227: vasee AFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL sr CLCB_RAT : 178- 227: vasee AFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL sr C 3: 190.4386 6( 6) E-A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P Occurences: 6(6) CLCA_BOVIN : 191- 240: eqaae EAFVnDiEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP lvh CLCA_HUMAN : 196- 245: eqaae EAFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP lvh CLCA_RAT : 196- 245: eqaae EAFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP lvh CLCB_BOVIN : 176- 225: yvase EAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTP lsr CLCB_HUMAN : 177- 226: yvase EAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTP lsr CLCB_RAT : 177- 226: yvase EAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTP lsr D 4: 190.4198 6( 6) A-[AS]-E-E-A-F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K Occurences: 6(6) CLCA_BOVIN : 188- 237: ysleq AAEEAFVnDiEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLK qaplv CLCA_HUMAN : 193- 242: ysleq AAEEAFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLK qaplv CLCA_RAT : 193- 242: ysleq AAEEAFVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLK qaplv CLCB_BOVIN : 173- 222: iigyv ASEEAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLK qtpls CLCB_HUMAN : 174- 223: iigyv ASEEAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLK qtpls CLCB_RAT : 174- 223: tigyv ASEEAFVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLK qtpls E 5: 189.4396 6( 6) F-V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV] Occurences: 6(6) CLCA_BOVIN : 193- 242: aaeea FVnDiEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLV h CLCA_HUMAN : 198- 247: aaeea FVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLV h CLCA_RAT : 198- 247: aaeea FVnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLV h CLCB_BOVIN : 178- 227: aseea FVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLS r CLCB_HUMAN : 179- 228: aseea FVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLS r CLCB_RAT : 179- 228: aseea FVkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLS r F 6: 188.4465 6( 6) V-x-[DE]-x-[DEK]-E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] Occurences: 6(6) CLCA_BOVIN : 194- 243: aeeaf VnDiEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_HUMAN : 199- 248: aeeaf VnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_RAT : 199- 248: aeeaf VnDiDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCB_BOVIN : 179- 228: seeaf VkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_HUMAN : 180- 229: seeaf VkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_RAT : 180- 229: seeaf VkEsKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR G 7: 179.3737 6( 6) N-G-P-[AT]-D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E Occurences: 6(6) CLCA_BOVIN : 83- 132: yyqes NGPTDSYAAISQVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKE kaike CLCA_HUMAN : 88- 137: yyqes NGPTDSYAAISQVDRL-QsEPESIRKWREEQmERLEALDANSRkqEAEWKE kaike CLCA_RAT : 88- 137: yyqes NGPTDSYAAISEVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKE kavke CLCB_BOVIN : 80- 129: vfqea NGPADGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWRE kakkd CLCB_HUMAN : 81- 130: vfqea NGPADGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWRE kakkd CLCB_RAT : 81- 130: vfqea NGPADGYAAIAQADRLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWRE kakkd H 8: 179.3737 6( 6) P-[AT]-D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A Occurences: 6(6) CLCA_BOVIN : 85- 134: qesng PTDSYAAISQVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKA ikeld CLCA_HUMAN : 90- 139: qesng PTDSYAAISQVDRL-QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKA ikele CLCA_RAT : 90- 139: qesng PTDSYAAISEVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKA vkele CLCB_BOVIN : 82- 131: qeang PADGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWREKA kkdle CLCB_HUMAN : 83- 132: qeang PADGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWREKA kkdle CLCB_RAT : 83- 132: qeang PADGYAAIAQADRLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWREKA kkdle I 9: 179.3047 6( 6) E-[AS]-N-G-P-[AT]-D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W Occurences: 6(6) CLCA_BOVIN : 81- 130: gdyyq ESNGPTDSYAAISQVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEW kekai CLCA_HUMAN : 86- 135: geyyq ESNGPTDSYAAISQVDRL-QsEPESIRKWREEQmERLEALDANSRkqEAEW kekai CLCA_RAT : 86- 135: geyyq ESNGPTDSYAAISEVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEW kekav CLCB_BOVIN : 78- 127: gdvfq EANGPADGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEW rekak CLCB_HUMAN : 79- 128: gdvfq EANGPADGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEW rekak CLCB_RAT : 79- 128: gdvfq EANGPADGYAAIAQADRLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEW rekak J 10: 178.4746 6( 6) E-[ES]-[ST]-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] Occurences: 6(6) CLCA_BOVIN : 199- 243: vndie ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_HUMAN : 204- 248: vndid ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_RAT : 204- 248: vndid ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCB_BOVIN : 184- 228: vkesk EETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_HUMAN : 185- 229: vkesk EETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_RAT : 185- 229: vkesk EETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR K 11: 176.1757 6( 6) D-[GS]-Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K Occurences: 6(6) CLCA_BOVIN : 87- 136: sngpt DSYAAISQVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAiK eldew CLCA_HUMAN : 92- 141: sngpt DSYAAISQVDRL-QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKAiK eleew CLCA_RAT : 92- 141: sngpt DSYAAISEVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAvK eleew CLCB_BOVIN : 84- 133: angpa DGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWREKAkK dleew CLCB_HUMAN : 85- 134: angpa DGYAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWREKAkK dleew CLCB_RAT : 85- 134: angpa DGYAAIAQADRLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWREKAkK dleew L 12: 176.1658 6( 6) Y-A-A-I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L Occurences: 6(6) CLCA_BOVIN : 89- 138: gptds YAAISQVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAiKEL dewya CLCA_HUMAN : 94- 143: gptds YAAISQVDRL-QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKAiKEL eewya CLCA_RAT : 94- 143: gptds YAAISEVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAvKEL eewya CLCB_BOVIN : 86- 135: gpadg YAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWREKAkKDL eewnq CLCB_HUMAN : 87- 136: gpadg YAAIAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWREKAkKDL eewnq CLCB_RAT : 87- 136: gpadg YAAIAQADRLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWREKAkKDL eewnq M 13: 175.1663 6( 6) I-[AS]-[EQ]-[AV]-D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W Occurences: 6(6) CLCA_BOVIN : 92- 141: dsyaa ISQVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAiKELDEW yarqd CLCA_HUMAN : 97- 146: dsyaa ISQVDRL-QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKAiKELEEW yarqd CLCA_RAT : 97- 146: dsyaa ISEVDRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAvKELEEW yarqd CLCB_BOVIN : 89- 138: dgyaa IAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWREKAkKDLEEW nqrqs CLCB_HUMAN : 90- 139: dgyaa IAQADRLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWREKAkKDLEEW nqrqs CLCB_RAT : 90- 139: dgyaa IAQADRLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWREKAkKDLEEW nqrqs N 14: 173.0721 6( 6) D-R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q Occurences: 6(6) CLCA_BOVIN : 96- 145: aisqv DRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAiKELDEWyARQ deqlq CLCA_HUMAN : 101- 150: aisqv DRL-QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKAiKELEEWyARQ deqlq CLCA_RAT : 101- 150: aisev DRL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAvKELEEWyARQ deqlq CLCB_BOVIN : 93- 142: aiaqa DRLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWREKAkKDLEEWnQRQ seqve CLCB_HUMAN : 94- 143: aiaqa DRLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWREKAkKDLEEWnQRQ seqve CLCB_RAT : 94- 143: aiaqa DRLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWREKAkKDLEEWnQRQ seqve O 15: 172.5997 6( 6) Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q-[DS]-E-Q Occurences: 6(6) CLCA_BOVIN : 99- 148: qvdrl QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAiKELDEWyARQDEQ lqktk CLCA_HUMAN : 104- 153: qvdrl QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKAiKELEEWyARQDEQ lqktk CLCA_RAT : 104- 153: evdrl QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAvKELEEWyARQDEQ lqktk CLCB_BOVIN : 97- 145: adrlt Q-EPESIRKWREEQrKRLQELDAASKvmEQEWREKAkKDLEEWnQRQSEQ veknk CLCB_HUMAN : 98- 146: adrlt Q-EPESIRKWREEQrKRLQELDAASKvtEQEWREKAkKDLEEWnQRQSEQ veknk CLCB_RAT : 98- 146: adrlt Q-EPESIRKWREEQkKRLQELDAASKvtEQEWREKAkKDLEEWnQRQSEQ veknk P 16: 172.0997 6( 6) L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q-[DS]-E Occurences: 6(6) CLCA_BOVIN : 98- 147: sqvdr L-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAiKELDEWyARQDE qlqkt CLCA_HUMAN : 103- 152: sqvdr L-QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKAiKELEEWyARQDE qlqkt CLCA_RAT : 103- 152: sevdr L-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAvKELEEWyARQDE qlqkt CLCB_BOVIN : 95- 144: aqadr LtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWREKAkKDLEEWnQRQSE qvekn CLCB_HUMAN : 96- 145: aqadr LtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWREKAkKDLEEWnQRQSE qvekn CLCB_RAT : 96- 145: aqadr LtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWREKAkKDLEEWnQRQSE qvekn Q 17: 171.6086 9( 6) E-x(1,2)-P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] Occurences: 9(6) CLCA_BOVIN : 199- 243: vndie EssPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_HUMAN : 204- 248: vndid EssPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_RAT : 204- 248: vndid EssPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCB_BOVIN : 184- 228: vkesk EetPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_BOVIN : 185- 228: keske Et-PGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_HUMAN : 185- 229: vkesk EetPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_HUMAN : 186- 229: keske Et-PGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_RAT : 185- 229: vkesk EetPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_RAT : 186- 229: keske Et-PGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR R 18: 168.9020 6( 6) R-L-x(0,1)-Q-x(0,1)-E-P-E-S-I-R-K-W-R-E-E-Q-x-[EK]-R-L-[EQ]-[AE]-L-D-A-[AN]-S-[KR]-x(2)-E-[AQ]-E-W-[KR]-E-K-A-x-K-[DE]-L-[DE]-E-W-x-[AQ]-R-Q Occurences: 6(6) CLCA_BOVIN : 97- 145: isqvd RL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAiKELDEWyARQ deqlq CLCA_HUMAN : 102- 150: isqvd RL-QsEPESIRKWREEQmERLEALDANSRkqEAEWKEKAiKELEEWyARQ deqlq CLCA_RAT : 102- 150: isevd RL-QsEPESIRKWREEQtERLEALDANSRkqEAEWKEKAvKELEEWyARQ deqlq CLCB_BOVIN : 94- 142: iaqad RLtQ-EPESIRKWREEQrKRLQELDAASKvmEQEWREKAkKDLEEWnQRQ seqve CLCB_HUMAN : 95- 143: iaqad RLtQ-EPESIRKWREEQrKRLQELDAASKvtEQEWREKAkKDLEEWnQRQ seqve CLCB_RAT : 95- 143: iaqad RLtQ-EPESIRKWREEQkKRLQELDAASKvtEQEWREKAkKDLEEWnQRQ seqve S 19: 167.9386 6( 6) P-G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] Occurences: 6(6) CLCA_BOVIN : 202- 243: ieess PGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_HUMAN : 207- 248: idess PGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_RAT : 207- 248: idess PGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCB_BOVIN : 187- 228: skeet PGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_HUMAN : 188- 229: skeet PGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_RAT : 188- 229: skeet PGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR T 20: 163.7686 6( 6) G-T-E-W-E-[KR]-V-A-[QR]-L-C-D-F-N-P-K-S-S-K-Q-[AC]-K-D-V-S-R-[LM]-R-S-V-L-[IM]-S-L-K-Q-[AT]-P-L-[SV]-[HR] Occurences: 6(6) CLCA_BOVIN : 203- 243: eessp GTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_HUMAN : 208- 248: dessp GTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCA_RAT : 208- 248: dessp GTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH CLCB_BOVIN : 188- 228: keetp GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_HUMAN : 189- 229: keetp GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR CLCB_RAT : 189- 229: keetp GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR Number of patterns evaluated by Pratt:49315 Total running time: 6 seconds