------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file CKS_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename CKS_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CKS1_HUMAN 79 CKS1_PATVU 76 CKS1_SCHPO 113 CKS1_YEAST 150 CKS2_HUMAN 79 Pratt run started at Thu Feb 6 19:07:39 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 83.4010 5( 5) E-x-E-W-R-x(2)-G-x(2)-Q-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-x-R 2: 82.4010 5( 5) E-x-E-W-R-x(2)-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-x-R 3: 81.9010 5( 5) L-x(4,5)-E-x(0,2)-W-R-x(2)-G-x(2)-Q-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-x-R 4: 78.2310 5( 5) E-W-R-x(2)-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-x-R 5: 74.0609 5( 5) W-R-x(2)-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-x-R 6: 69.8909 5( 5) R-x(2)-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-x-R 7: 65.7208 5( 5) G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-x-R 8: 62.5508 5( 5) I-x-Y-S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 9: 61.5508 5( 5) I-x(0,1)-Y-x(0,1)-S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 10: 61.5508 5( 5) Q-x(2,4)-Y-S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 11: 58.3807 5( 5) Y-S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 12: 57.8807 8( 5) Y-x(0,1)-S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 13: 56.3807 5( 5) Q-S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-x-R 14: 54.2107 5( 5) S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 15: 52.2107 5( 5) S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-x-R 16: 50.0406 5( 5) Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 17: 48.0406 5( 5) G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-x-R 18: 45.8706 5( 5) D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P 19: 43.8706 5( 5) W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-x-R 20: 41.7005 5( 5) E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 130.8561 5( 5) I-[HY]-Y-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] B 2: 124.0218 5( 5) I-x(0,1)-Y-x(0,1)-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES] C 3: 124.0218 5( 5) Q-x(2,4)-Y-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES] D 4: 123.5136 5( 5) Y-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] E 5: 123.0136 8( 5) Y-x(0,1)-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] F 6: 119.3435 5( 5) S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] G 7: 108.7541 5( 5) Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] H 8: 104.5841 5( 5) D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] I 9: 98.5455 5( 5) E-x-E-W-R-x-[IL]-G-[IV]-[QT]-Q-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] J 10: 97.0455 5( 5) L-x(4,5)-E-x(0,2)-W-R-x-[IL]-G-[IV]-[QT]-Q-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] K 11: 94.0589 5( 5) E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] L 12: 93.3359 5( 5) E-[ADES]-E-W-R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] M 13: 86.9486 5( 5) E-W-R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] N 14: 82.7786 5( 5) W-R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] O 15: 78.6085 5( 5) R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] P 16: 71.1519 5( 5) G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Q 17: 61.8118 5( 5) Q-S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-[KR]-R-x(2)-[DNPT] R 18: 57.8807 8( 5) Y-x(0,1)-S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P S 19: 57.6417 5( 5) S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-[KR]-R-x(2)-[DNPT] T 20: 56.3807 5( 5) Q-S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-x-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 130.8561 5( 5) I-[HY]-Y-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] Occurences: 5(5) CKS1_HUMAN : 6- 55: mshkq IYYSDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_PATVU : 6- 55: msarq IYYSDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_SCHPO : 25- 74: pfidq IHYSPRYaDDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEEwrgL gitqs CKS1_YEAST : 28- 77: efqds IHYSPRYsDDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDEwrgL gitqs CKS2_HUMAN : 6- 55: mahkq IYYSDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih B 2: 124.0218 5( 5) I-x(0,1)-Y-x(0,1)-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES] Occurences: 5(5) CKS1_HUMAN : 6- 51: mshkq IyY-SDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQS qgwvh CKS1_HUMAN : 6- 51: mshkq I-YySDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQS qgwvh CKS1_PATVU : 6- 51: msarq IyY-SDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQS hgwih CKS1_PATVU : 6- 51: msarq I-YySDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQS hgwih CKS1_SCHPO : 25- 70: pfidq IhY-SPRYaDDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEE wrglg CKS1_YEAST : 28- 73: efqds IhY-SPRYsDDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDE wrglg CKS2_HUMAN : 6- 51: mahkq IyY-SDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQS lgwvh CKS2_HUMAN : 6- 51: mahkq I-YySDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQS lgwvh C 3: 124.0218 5( 5) Q-x(2,4)-Y-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES] Occurences: 5(5) CKS1_HUMAN : 5- 51: mshk Qiy--YSDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQS qgwvh CKS1_PATVU : 5- 51: msar Qiy--YSDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQS hgwih CKS1_SCHPO : 24- 70: epfid Qih--YSPRYaDDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEE wrglg CKS1_YEAST : 25- 73: rvlef QdsihYSPRYsDDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDE wrglg CKS2_HUMAN : 5- 51: mahk Qiy--YSDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQS lgwvh D 4: 123.5136 5( 5) Y-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] Occurences: 5(5) CKS1_HUMAN : 8- 55: hkqiy YSDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_PATVU : 8- 55: arqiy YSDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_SCHPO : 27- 74: idqih YSPRYaDDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEEwrgL gitqs CKS1_YEAST : 30- 77: qdsih YSPRYsDDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDEwrgL gitqs CKS2_HUMAN : 8- 55: hkqiy YSDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih E 5: 123.0136 8( 5) Y-x(0,1)-S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] Occurences: 8(5) CKS1_HUMAN : 7- 55: shkqi YySDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_HUMAN : 8- 55: hkqiy Y-SDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_PATVU : 7- 55: sarqi YySDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_PATVU : 8- 55: arqiy Y-SDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_SCHPO : 27- 74: idqih Y-SPRYaDDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEEwrgL gitqs CKS1_YEAST : 30- 77: qdsih Y-SPRYsDDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDEwrgL gitqs CKS2_HUMAN : 7- 55: ahkqi YySDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih CKS2_HUMAN : 8- 55: hkqiy Y-SDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih F 6: 119.3435 5( 5) S-[DP]-[KR]-Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] Occurences: 5(5) CKS1_HUMAN : 9- 55: kqiyy SDKYdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_PATVU : 9- 55: rqiyy SDKYfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_SCHPO : 28- 74: dqihy SPRYaDDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEEwrgL gitqs CKS1_YEAST : 31- 77: dsihy SPRYsDDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDEwrgL gitqs CKS2_HUMAN : 9- 55: kqiyy SDKYfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih G 7: 108.7541 5( 5) Y-x-D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] Occurences: 5(5) CKS1_HUMAN : 12- 55: yysdk YdDEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_PATVU : 12- 55: yysdk YfDEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_SCHPO : 31- 74: hyspr YaDDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEEwrgL gitqs CKS1_YEAST : 34- 77: hyspr YsDDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDEwrgL gitqs CKS2_HUMAN : 12- 55: yysdk YfDEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih H 8: 104.5841 5( 5) D-[DE]-x-[FY]-E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] Occurences: 5(5) CKS1_HUMAN : 14- 55: sdkyd DEeFEYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_PATVU : 14- 55: sdkyf DEdFEYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_SCHPO : 33- 74: sprya DDeYEYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEEwrgL gitqs CKS1_YEAST : 36- 77: sprys DDnYEYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDEwrgL gitqs CKS2_HUMAN : 14- 55: sdkyf DEhYEYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih I 9: 98.5455 5( 5) E-x-E-W-R-x-[IL]-G-[IV]-[QT]-Q-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 40- 74: thlms EsEWRnLGVQQSqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_PATVU : 40- 74: nhlms EaEWRsIGVQQShGWihYmkHePEPHILLFRRkvT gq CKS1_SCHPO : 68- 102: lrilq EeEWRgLGITQSlGWemYevHvPEPHILLFKRekD yqmkf CKS1_YEAST : 71- 105: lrilt EdEWRgLGITQSlGWehYecHaPEPHILLFKRplN yeael CKS2_HUMAN : 40- 74: thlms EeEWRrLGVQQSlGWvhYmiHePEPHILLFRRplP kdqqk J 10: 97.0455 5( 5) L-x(4,5)-E-x(0,2)-W-R-x-[IL]-G-[IV]-[QT]-Q-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 37- 74: vpkth Lmses-E--WRnLGVQQSqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_PATVU : 37- 74: vpknh Lmsea-E--WRsIGVQQShGWihYmkHePEPHILLFRRkvT gq CKS1_SCHPO : 63- 102: petgt LrilqeEe-WRgLGITQSlGWemYevHvPEPHILLFKRekD yqmkf CKS1_SCHPO : 63- 102: petgt Lrilq-EeeWRgLGITQSlGWemYevHvPEPHILLFKRekD yqmkf CKS1_YEAST : 66- 105: sevgt Lrilt-EdeWRgLGITQSlGWehYecHaPEPHILLFKRplN yeael CKS2_HUMAN : 37- 74: vpkth Lmsee-E--WRrLGVQQSlGWvhYmiHePEPHILLFRRplP kdqqk K 11: 94.0589 5( 5) E-Y-R-H-V-M-L-P-[KR]-[ADE]-[ILM]-x-K-x-[IV]-P-x-[DNT]-[HY]-[FL]-x-[PS]-E-x-[EG]-x(2)-[NRS]-[IL]-[GL]-x-[EQ]-[DEQ]-[ES]-x(3)-[ILV] Occurences: 5(5) CKS1_HUMAN : 18- 55: ddeef EYRHVMLPKDIaKlVPkTHLmSEsEwrNLGvQQSqgwV hymih CKS1_PATVU : 18- 55: fdedf EYRHVMLPKDIaKmVPkNHLmSEaEwrSIGvQQShgwI hymkh CKS1_SCHPO : 37- 74: addey EYRHVMLPKAMlKaIPtDYFnPEtGtlRILqEEEwrgL gitqs CKS1_YEAST : 40- 77: sddny EYRHVMLPKAMlKvIPsDYFnSEvGtlRILtEDEwrgL gitqs CKS2_HUMAN : 18- 55: fdehy EYRHVMLPRELsKqVPkTHLmSEeEwrRLGvQQSlgwV hymih L 12: 93.3359 5( 5) E-[ADES]-E-W-R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 40- 74: thlms ESEWRnLGvqQ-SqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_HUMAN : 40- 74: thlms ESEWRnLGv-QqSqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_PATVU : 40- 74: nhlms EAEWRsIGvqQ-ShGWihYmkHePEPHILLFRRkvT gq CKS1_PATVU : 40- 74: nhlms EAEWRsIGv-QqShGWihYmkHePEPHILLFRRkvT gq CKS1_SCHPO : 68- 102: lrilq EEEWRgLGitQ-SlGWemYevHvPEPHILLFKRekD yqmkf CKS1_YEAST : 71- 105: lrilt EDEWRgLGitQ-SlGWehYecHaPEPHILLFKRplN yeael CKS2_HUMAN : 40- 74: thlms EEEWRrLGvqQ-SlGWvhYmiHePEPHILLFRRplP kdqqk CKS2_HUMAN : 40- 74: thlms EEEWRrLGv-QqSlGWvhYmiHePEPHILLFRRplP kdqqk M 13: 86.9486 5( 5) E-W-R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 42- 74: lmses EWRnLGvqQ-SqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_HUMAN : 42- 74: lmses EWRnLGv-QqSqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_PATVU : 42- 74: lmsea EWRsIGvqQ-ShGWihYmkHePEPHILLFRRkvT gq CKS1_PATVU : 42- 74: lmsea EWRsIGv-QqShGWihYmkHePEPHILLFRRkvT gq CKS1_SCHPO : 70- 102: ilqee EWRgLGitQ-SlGWemYevHvPEPHILLFKRekD yqmkf CKS1_YEAST : 73- 105: ilted EWRgLGitQ-SlGWehYecHaPEPHILLFKRplN yeael CKS2_HUMAN : 42- 74: lmsee EWRrLGvqQ-SlGWvhYmiHePEPHILLFRRplP kdqqk CKS2_HUMAN : 42- 74: lmsee EWRrLGv-QqSlGWvhYmiHePEPHILLFRRplP kdqqk N 14: 82.7786 5( 5) W-R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 43- 74: msese WRnLGvqQ-SqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_HUMAN : 43- 74: msese WRnLGv-QqSqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_PATVU : 43- 74: mseae WRsIGvqQ-ShGWihYmkHePEPHILLFRRkvT gq CKS1_PATVU : 43- 74: mseae WRsIGv-QqShGWihYmkHePEPHILLFRRkvT gq CKS1_SCHPO : 71- 102: lqeee WRgLGitQ-SlGWemYevHvPEPHILLFKRekD yqmkf CKS1_YEAST : 74- 105: ltede WRgLGitQ-SlGWehYecHaPEPHILLFKRplN yeael CKS2_HUMAN : 43- 74: mseee WRrLGvqQ-SlGWvhYmiHePEPHILLFRRplP kdqqk CKS2_HUMAN : 43- 74: mseee WRrLGv-QqSlGWvhYmiHePEPHILLFRRplP kdqqk O 15: 78.6085 5( 5) R-x-[IL]-G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 44- 74: sesew RnLGvqQ-SqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_HUMAN : 44- 74: sesew RnLGv-QqSqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_PATVU : 44- 74: seaew RsIGvqQ-ShGWihYmkHePEPHILLFRRkvT gq CKS1_PATVU : 44- 74: seaew RsIGv-QqShGWihYmkHePEPHILLFRRkvT gq CKS1_SCHPO : 72- 102: qeeew RgLGitQ-SlGWemYevHvPEPHILLFKRekD yqmkf CKS1_YEAST : 75- 105: tedew RgLGitQ-SlGWehYecHaPEPHILLFKRplN yeael CKS2_HUMAN : 44- 74: seeew RrLGvqQ-SlGWvhYmiHePEPHILLFRRplP kdqqk CKS2_HUMAN : 44- 74: seeew RrLGv-QqSlGWvhYmiHePEPHILLFRRplP kdqqk P 16: 71.1519 5( 5) G-x(1,2)-Q-x(0,1)-S-x-G-W-x(2)-Y-x(2)-H-x-P-E-P-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 47- 74: ewrnl GvqQ-SqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_HUMAN : 47- 74: ewrnl Gv-QqSqGWvhYmiHePEPHILLFRRplP kkpkk CKS1_PATVU : 47- 74: ewrsi GvqQ-ShGWihYmkHePEPHILLFRRkvT gq CKS1_PATVU : 47- 74: ewrsi Gv-QqShGWihYmkHePEPHILLFRRkvT gq CKS1_SCHPO : 75- 102: ewrgl GitQ-SlGWemYevHvPEPHILLFKRekD yqmkf CKS1_YEAST : 78- 105: ewrgl GitQ-SlGWehYecHaPEPHILLFKRplN yeael CKS2_HUMAN : 47- 74: ewrrl GvqQ-SlGWvhYmiHePEPHILLFRRplP kdqqk CKS2_HUMAN : 47- 74: ewrrl Gv-QqSlGWvhYmiHePEPHILLFRRplP kdqqk Q 17: 61.8118 5( 5) Q-S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 50- 74: nlgvq QSqGWvhYmiHepEP--HILLFRRplP kkpkk CKS1_HUMAN : 50- 74: nlgvq QSqGWvhYmiH--EPepHILLFRRplP kkpkk CKS1_PATVU : 50- 74: sigvq QShGWihYmkHepEP--HILLFRRkvT gq CKS1_PATVU : 50- 74: sigvq QShGWihYmkH--EPepHILLFRRkvT gq CKS1_SCHPO : 78- 102: glgit QSlGWemYevHvpEP--HILLFKRekD yqmkf CKS1_YEAST : 81- 105: glgit QSlGWehYecHapEP--HILLFKRplN yeael CKS2_HUMAN : 50- 74: rlgvq QSlGWvhYmiHepEP--HILLFRRplP kdqqk CKS2_HUMAN : 50- 74: rlgvq QSlGWvhYmiH--EPepHILLFRRplP kdqqk R 18: 57.8807 8( 5) Y-x(0,1)-S-x(2)-Y-x-D-x(3)-E-Y-R-H-V-M-L-P-x(4)-K-x(2)-P Occurences: 8(5) CKS1_HUMAN : 7- 33: shkqi YySdkYdDeefEYRHVMLPkdiaKlvP kthlm CKS1_HUMAN : 8- 33: hkqiy Y-SdkYdDeefEYRHVMLPkdiaKlvP kthlm CKS1_PATVU : 7- 33: sarqi YySdkYfDedfEYRHVMLPkdiaKmvP knhlm CKS1_PATVU : 8- 33: arqiy Y-SdkYfDedfEYRHVMLPkdiaKmvP knhlm CKS1_SCHPO : 27- 52: idqih Y-SprYaDdeyEYRHVMLPkamlKaiP tdyfn CKS1_YEAST : 30- 55: qdsih Y-SprYsDdnyEYRHVMLPkamlKviP sdyfn CKS2_HUMAN : 7- 33: ahkqi YySdkYfDehyEYRHVMLPrelsKqvP kthlm CKS2_HUMAN : 8- 33: hkqiy Y-SdkYfDehyEYRHVMLPrelsKqvP kthlm S 19: 57.6417 5( 5) S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-[KR]-R-x(2)-[DNPT] Occurences: 5(5) CKS1_HUMAN : 51- 74: lgvqq SqGWvhYmiHepEP--HILLFRRplP kkpkk CKS1_HUMAN : 51- 74: lgvqq SqGWvhYmiH--EPepHILLFRRplP kkpkk CKS1_PATVU : 51- 74: igvqq ShGWihYmkHepEP--HILLFRRkvT gq CKS1_PATVU : 51- 74: igvqq ShGWihYmkH--EPepHILLFRRkvT gq CKS1_SCHPO : 79- 102: lgitq SlGWemYevHvpEP--HILLFKRekD yqmkf CKS1_YEAST : 82- 105: lgitq SlGWehYecHapEP--HILLFKRplN yeael CKS2_HUMAN : 51- 74: lgvqq SlGWvhYmiHepEP--HILLFRRplP kdqqk CKS2_HUMAN : 51- 74: lgvqq SlGWvhYmiH--EPepHILLFRRplP kdqqk T 20: 56.3807 5( 5) Q-S-x-G-W-x(2)-Y-x(2)-H-x(0,2)-E-P-x(0,2)-H-I-L-L-F-x-R Occurences: 5(5) CKS1_HUMAN : 50- 71: nlgvq QSqGWvhYmiHepEP--HILLFrR plpkk CKS1_HUMAN : 50- 71: nlgvq QSqGWvhYmiH--EPepHILLFrR plpkk CKS1_PATVU : 50- 71: sigvq QShGWihYmkHepEP--HILLFrR kvtgq CKS1_PATVU : 50- 71: sigvq QShGWihYmkH--EPepHILLFrR kvtgq CKS1_SCHPO : 78- 99: glgit QSlGWemYevHvpEP--HILLFkR ekdyq CKS1_YEAST : 81- 102: glgit QSlGWehYecHapEP--HILLFkR plnye CKS2_HUMAN : 50- 71: rlgvq QSlGWvhYmiHepEP--HILLFrR plpkd CKS2_HUMAN : 50- 71: rlgvq QSlGWvhYmiH--EPepHILLFrR plpkd Number of patterns evaluated by Pratt:2041 Total running time: 1 seconds